Query 027283
Match_columns 225
No_of_seqs 109 out of 1146
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 9.9E-33 2.1E-37 236.4 16.8 150 42-225 1-152 (261)
2 PRK13911 exodeoxyribonuclease 100.0 1E-30 2.2E-35 225.0 18.3 146 42-225 1-148 (250)
3 PRK11756 exonuclease III; Prov 99.9 1.7E-24 3.7E-29 187.3 18.3 149 42-225 1-155 (268)
4 TIGR00195 exoDNase_III exodeox 99.9 4.7E-24 1E-28 183.1 18.5 148 42-225 1-150 (254)
5 TIGR00633 xth exodeoxyribonucl 99.9 1.3E-22 2.9E-27 173.0 17.9 150 42-225 1-153 (255)
6 PRK05421 hypothetical protein; 99.7 5.4E-16 1.2E-20 134.4 14.3 151 32-224 34-193 (263)
7 PF03372 Exo_endo_phos: Endonu 99.5 5.5E-13 1.2E-17 110.1 12.9 147 45-224 1-167 (249)
8 PRK15251 cytolethal distending 99.5 2.4E-12 5.1E-17 111.4 17.0 168 39-224 22-195 (271)
9 TIGR03395 sphingomy sphingomye 99.5 1.3E-12 2.7E-17 114.7 14.8 158 42-224 1-188 (283)
10 COG3568 ElsH Metal-dependent h 99.3 3.2E-11 7E-16 103.7 11.9 151 42-224 10-175 (259)
11 KOG2756 Predicted Mg2+-depende 99.3 9.8E-11 2.1E-15 100.3 12.9 151 38-224 96-254 (349)
12 PLN03144 Carbon catabolite rep 99.3 2.2E-10 4.8E-15 109.2 16.2 157 38-224 251-466 (606)
13 PTZ00297 pantothenate kinase; 99.2 2.7E-10 5.9E-15 117.9 15.7 164 38-224 7-206 (1452)
14 KOG2338 Transcriptional effect 99.2 6.8E-10 1.5E-14 102.0 14.9 156 40-225 115-304 (495)
15 smart00476 DNaseIc deoxyribonu 99.1 3.4E-09 7.4E-14 92.6 15.9 156 40-225 16-188 (276)
16 KOG3873 Sphingomyelinase famil 99.0 1.7E-09 3.7E-14 96.0 7.9 162 38-224 5-181 (422)
17 smart00128 IPPc Inositol polyp 98.8 2.2E-07 4.7E-12 82.6 14.2 162 41-224 4-192 (310)
18 KOG1294 Apurinic/apyrimidinic 98.7 3.1E-08 6.7E-13 88.5 7.6 151 42-225 64-224 (335)
19 COG3021 Uncharacterized protei 98.3 2E-06 4.4E-11 75.7 7.5 154 25-224 75-233 (309)
20 PF14529 Exo_endo_phos_2: Endo 98.1 6.9E-06 1.5E-10 61.6 5.1 41 175-224 1-41 (119)
21 KOG0566 Inositol-1,4,5-triphos 97.4 0.0043 9.3E-08 61.6 13.8 160 39-224 536-725 (1080)
22 COG5239 CCR4 mRNA deadenylase, 96.9 0.0028 6E-08 56.9 6.5 44 41-84 30-86 (378)
23 KOG0620 Glucose-repressible al 94.6 0.038 8.2E-07 50.3 4.0 77 41-144 19-116 (361)
24 COG2374 Predicted extracellula 93.0 9.1 0.0002 38.0 16.9 47 37-83 459-527 (798)
25 PLN03191 Type I inositol-1,4,5 86.2 2.9 6.3E-05 40.5 7.4 55 167-224 412-480 (621)
26 PTZ00312 inositol-1,4,5-tripho 81.5 3.6 7.9E-05 36.6 5.5 51 174-224 81-139 (356)
27 PLN03191 Type I inositol-1,4,5 60.1 8.3 0.00018 37.5 3.0 37 42-81 110-149 (621)
28 COG5411 Phosphatidylinositol 5 47.5 29 0.00062 32.6 4.2 46 174-224 166-217 (460)
29 PF09949 DUF2183: Uncharacteri 35.9 47 0.001 24.5 3.2 23 196-221 50-72 (100)
30 cd07587 ML_beta-AS mammalian-l 35.6 55 0.0012 29.7 4.2 54 30-83 52-115 (363)
31 PLN02504 nitrilase 32.1 90 0.002 28.1 5.0 60 14-83 5-69 (346)
32 TIGR02855 spore_yabG sporulati 26.6 47 0.001 29.2 2.1 23 57-79 139-161 (283)
33 PLN02798 nitrilase 24.9 84 0.0018 27.1 3.4 40 40-80 9-51 (286)
34 PF05582 Peptidase_U57: YabG p 24.8 50 0.0011 29.2 1.9 22 58-79 141-162 (287)
35 PRK13286 amiE acylamide amidoh 24.6 1E+02 0.0022 27.8 3.9 47 37-83 8-63 (345)
36 cd07578 nitrilase_1_R1 First n 23.1 99 0.0021 26.0 3.5 16 68-83 30-45 (258)
37 KOG1387 Glycosyltransferase [C 22.8 1E+02 0.0022 28.5 3.5 42 176-225 47-89 (465)
38 PRK10438 C-N hydrolase family 22.3 1.2E+02 0.0025 25.8 3.7 23 61-83 23-46 (256)
39 KOG1294 Apurinic/apyrimidinic 20.2 1.6E+02 0.0035 26.6 4.3 53 162-218 10-64 (335)
40 KOG0808 Carbon-nitrogen hydrol 20.1 82 0.0018 27.7 2.3 22 61-82 103-124 (387)
41 PLN00202 beta-ureidopropionase 20.0 1E+02 0.0022 28.5 3.1 17 67-83 122-138 (405)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.9e-33 Score=236.42 Aligned_cols=150 Identities=29% Similarity=0.536 Sum_probs=126.7
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCCC
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (225)
|||+||||||++++.+ .+.+|+.+++|||+|||||+.....+|.. .+ ...
T Consensus 1 mkI~SwNVNgiRar~~----~~~~~l~~~~pDVlclQEtK~~~~~fp~~-----------------------~~---~~~ 50 (261)
T COG0708 1 MKIASWNVNGLRARLK----KLLDWLEEEQPDVLCLQETKAQDEQFPRE-----------------------EL---EAL 50 (261)
T ss_pred CeeEEEehhhHHHHHH----HHHHHHHHhCCCEEEEEecccCcccCCHh-----------------------HH---hhC
Confidence 7999999999999984 59999999999999999999999888631 12 237
Q ss_pred CceEEEEcCCCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccccHHHHHHHH
Q 027283 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (225)
Q Consensus 122 gy~~~~~~~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~~~r~~~~ 201 (225)
||+.++..+.+|++||||+||.+ |.++..+++. .+..+.+||+|.++++.++|+|+|+|+++.. +.+++.+|.+|+
T Consensus 51 GY~~~~~~gqKgysGVailsr~~--~~~v~~g~~~-~~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~-~~~k~~yKl~f~ 126 (261)
T COG0708 51 GYHHVFNHGQKGYSGVAILSKKP--PDDVRRGFPG-EEEDDEEGRVIEAEFDGFRVINLYFPNGSSI-GLEKFDYKLRFL 126 (261)
T ss_pred CceEEEecCcCCcceEEEEEccC--chhhhcCCCC-CccccccCcEEEEEECCEEEEEEEcCCCCCC-CCcchHHHHHHH
Confidence 99666666778899999999986 5567778773 1345678999999999999999999999972 236899999999
Q ss_pred HHHHHHHHhc--CCCCEEEEeccCCC
Q 027283 202 KRIQEFVLQC--SGKPLIWCGDLNVR 225 (225)
Q Consensus 202 ~~L~~~l~~~--~~~p~Il~GDFN~~ 225 (225)
+.|..+++++ .+.|+|+|||||+|
T Consensus 127 ~~l~~~l~~l~~~~~~~vl~GD~NIa 152 (261)
T COG0708 127 DALRNYLEELLKKGKPVVLCGDFNIA 152 (261)
T ss_pred HHHHHHHHHHhhcCCCEEEecccccC
Confidence 9999999875 56899999999986
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.97 E-value=1e-30 Score=225.04 Aligned_cols=146 Identities=35% Similarity=0.684 Sum_probs=121.9
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCCC
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (225)
|||+||||||++++.++ .+.+||.+++|||+|||||+.....+. + ...
T Consensus 1 mki~swNVNgir~~~~~---~~~~~l~~~~~DIiclQEtK~~~~~~~--------------------------~---~~~ 48 (250)
T PRK13911 1 MKLISWNVNGLRACMTK---GFMDFFNSVDADVFCIQESKMQQEQNT--------------------------F---EFK 48 (250)
T ss_pred CEEEEEEeCChhHhhhh---hHHHHHHhcCCCEEEEEeecccccccc--------------------------c---ccC
Confidence 79999999999988753 689999999999999999999875421 1 237
Q ss_pred CceEEEEcC-CCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccccHHHHHHH
Q 027283 122 NYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (225)
Q Consensus 122 gy~~~~~~~-~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~~~r~~~ 200 (225)
||+.++..+ .+|++||||++|.+ |..+.++++ ....+.+||+|.++++.++|+|+|+|+++.. .+++++|.+|
T Consensus 49 gY~~~~~~~~~kgy~GVAi~~k~~--~~~v~~~~~--~~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~~--~~r~~~K~~~ 122 (250)
T PRK13911 49 GYFDFWNCAIKKGYSGVVTFTKKE--PLSVSYGIN--IEEHDKEGRVITCEFESFYLVNVYTPNSQQA--LSRLSYRMSW 122 (250)
T ss_pred CceEEEEecccCccceEEEEEcCC--chheEEcCC--CCcccccCCEEEEEECCEEEEEEEecCCCCC--CcchHHHHHH
Confidence 998777543 56799999999986 666777775 2346789999999999999999999998864 3689999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEeccCCC
Q 027283 201 DKRIQEFVLQC-SGKPLIWCGDLNVR 225 (225)
Q Consensus 201 ~~~L~~~l~~~-~~~p~Il~GDFN~~ 225 (225)
++.|.++++++ .+.++|+|||||+|
T Consensus 123 ~~~~~~~l~~l~~~~~~Ii~GD~Nva 148 (250)
T PRK13911 123 EVEFKKFLKALELKKPVIVCGDLNVA 148 (250)
T ss_pred HHHHHHHHHhcccCCCEEEEccccCC
Confidence 99999999875 45699999999986
No 3
>PRK11756 exonuclease III; Provisional
Probab=99.93 E-value=1.7e-24 Score=187.30 Aligned_cols=149 Identities=25% Similarity=0.425 Sum_probs=109.8
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCCC
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (225)
|||+||||+|++.+. ..+.++|++++|||||||||+.....++. ..+ ...
T Consensus 1 mri~T~Nv~g~~~~~----~~i~~~i~~~~pDIi~LQE~~~~~~~~~~-----------------------~~~---~~~ 50 (268)
T PRK11756 1 MKFVSFNINGLRARP----HQLEAIIEKHQPDVIGLQETKVHDEMFPL-----------------------EEV---EAL 50 (268)
T ss_pred CEEEEEEcCCHHHHH----HHHHHHHHhcCCCEEEEEecccccccCCH-----------------------HHH---Hhc
Confidence 799999999987665 57999999999999999999876543210 011 126
Q ss_pred CceEEEEcCCCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeC----CEEEEEEEccCCCCCCccccHHHH
Q 027283 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRR 197 (225)
Q Consensus 122 gy~~~~~~~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~----~~~v~~vY~P~~~~~~~~~~~~~r 197 (225)
||..++. +..+++||||+||.++ ..+...++. ...+.++|++.+.+. .++|+|+|+|++....+..+++.|
T Consensus 51 gy~~~~~-~~~~~~GvailSr~p~--~~~~~~~~~--~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r 125 (268)
T PRK11756 51 GYHVFYH-GQKGHYGVALLSKQTP--IAVRKGFPT--DDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAK 125 (268)
T ss_pred CCEEEEe-CCCCCCEEEEEECCCh--HHeEECCCC--ccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHH
Confidence 8977765 4566889999999973 334444432 123457899988773 599999999987653223455678
Q ss_pred HHHHHHHHHHHHhc--CCCCEEEEeccCCC
Q 027283 198 RKWDKRIQEFVLQC--SGKPLIWCGDLNVR 225 (225)
Q Consensus 198 ~~~~~~L~~~l~~~--~~~p~Il~GDFN~~ 225 (225)
.+|++.|.+++.+. .+.|+|+|||||++
T Consensus 126 ~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~ 155 (268)
T PRK11756 126 RQFYQDLQNYLETELSPDNPLLIMGDMNIS 155 (268)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeecccC
Confidence 88999999998763 46799999999985
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.92 E-value=4.7e-24 Score=183.13 Aligned_cols=148 Identities=26% Similarity=0.557 Sum_probs=112.8
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCCC
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (225)
|||+||||+|++... ..+.++|..++|||||||||+.....+. . .+. ...
T Consensus 1 mri~t~Ni~g~~~~~----~~~~~~l~~~~~DIi~LQE~~~~~~~~~------~------------------~~~--~~~ 50 (254)
T TIGR00195 1 MKIISWNVNGLRARL----HKGLAWLKENQPDVLCLQETKVQDEQFP------L------------------EPF--HKE 50 (254)
T ss_pred CEEEEEEcCcHHHhH----HHHHHHHHhcCCCEEEEEecccchhhCC------H------------------HHh--hcC
Confidence 799999999988665 3589999999999999999987643221 0 110 136
Q ss_pred CceEEEEcCCCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccccHHHHHHHH
Q 027283 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (225)
Q Consensus 122 gy~~~~~~~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~~~r~~~~ 201 (225)
||..++... .+++||||++|.+ |+.+...++ ...++.++|++.+++.++.++|+|+|+++.. ..+++..|.+|+
T Consensus 51 g~~~~~~~~-~g~~Gvailsr~~--~~~~~~~~~--~~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~-~~~~~~~r~~~~ 124 (254)
T TIGR00195 51 GYHVFFSGQ-KGYSGVAIFSKEE--PLSVRRGFG--VEEEDAEGRIIMAEFDSFLVINGYFPNGSRD-DSEKLPYKLQWL 124 (254)
T ss_pred CcEEEEecC-CCcceEEEEEcCC--cceEEECCC--CcccccCCCEEEEEECCEEEEEEEccCCCCC-CCccHHHHHHHH
Confidence 888777644 5678999999964 555554443 1235678999999999999999999996543 235677899999
Q ss_pred HHHHHHHHhc--CCCCEEEEeccCCC
Q 027283 202 KRIQEFVLQC--SGKPLIWCGDLNVR 225 (225)
Q Consensus 202 ~~L~~~l~~~--~~~p~Il~GDFN~~ 225 (225)
+.|.+++.+. .+.|+|+|||||.+
T Consensus 125 ~~l~~~~~~~~~~~~pvIi~GDfN~~ 150 (254)
T TIGR00195 125 EALQNYLEKLVDKDKPVLICGDMNIA 150 (254)
T ss_pred HHHHHHHHHHHhcCCcEEEEeecccC
Confidence 9999999874 35799999999974
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=1.3e-22 Score=173.03 Aligned_cols=150 Identities=29% Similarity=0.542 Sum_probs=108.3
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCCC
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (225)
|||+||||+|++...++ .+.++|.+++|||||||||+.....+. ..+. ...
T Consensus 1 lri~t~Nv~g~~~~~~~---~~~~~l~~~~~DIv~LQE~~~~~~~~~------------------------~~~~--~~~ 51 (255)
T TIGR00633 1 MKIISWNVNGLRARLHK---LFLDWLKEEQPDVLCLQETKVADEQFP------------------------AELF--EEL 51 (255)
T ss_pred CEEEEEecccHHHHhhc---cHHHHHHhcCCCEEEEEeccCchhhCC------------------------HhHh--ccC
Confidence 79999999999876643 239999999999999999987643221 0010 136
Q ss_pred CceEEEEcCC-CCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccccHHHHHHH
Q 027283 122 NYQIWWSLAD-SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (225)
Q Consensus 122 gy~~~~~~~~-~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~~~r~~~ 200 (225)
||..++.... .+.+|+||++|.++. .+..+++. ...+.++|.+.+.+++++|+++|+|+++... .++...|..+
T Consensus 52 g~~~~~~~~~~~~~~G~ailsr~~~~--~~~~~~~~--~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~-~~~~~~r~~~ 126 (255)
T TIGR00633 52 GYHVFFHGAKSKGYSGVAILSKVEPL--DVRYGFGG--EEHDEEGRVITAEFDGFTVVNVYVPNGGSRG-LERLEYKLQF 126 (255)
T ss_pred CceEEEeecccCCcceEEEEEcCCcc--eEEECCCC--CcccCCCcEEEEEECCEEEEEEEccCCCCCC-chhHHHHHHH
Confidence 8877665433 367899999998642 33333331 3455688999888889999999999877421 2456678889
Q ss_pred HHHHHHHHHhc--CCCCEEEEeccCCC
Q 027283 201 DKRIQEFVLQC--SGKPLIWCGDLNVR 225 (225)
Q Consensus 201 ~~~L~~~l~~~--~~~p~Il~GDFN~~ 225 (225)
++.+.+.+.+. .+.|+|+|||||++
T Consensus 127 ~~~l~~~~~~~~~~~~~~Il~GDFN~~ 153 (255)
T TIGR00633 127 WDALFQYYEKELDAGKPVIICGDMNVA 153 (255)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeecccC
Confidence 98888776542 46799999999974
No 6
>PRK05421 hypothetical protein; Provisional
Probab=99.69 E-value=5.4e-16 Score=134.36 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=88.7
Q ss_pred CccccCCCCCcEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHH
Q 027283 32 SSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (225)
Q Consensus 32 ~~~~~~~~~~lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (225)
..+.-...+.|||+||||++...... ....+.+ ..+||||||||+...... ..+
T Consensus 34 ~~~~~~~~~~lri~t~NI~~~~~~~~---~~~l~~l-~~~~DiI~LQEv~~~~~~--------~~~-------------- 87 (263)
T PRK05421 34 PGEPLSTEERLRLLVWNIYKQQRAGW---LSVLKNL-GKDADLVLLQEAQTTPEL--------VQF-------------- 87 (263)
T ss_pred cccccCcCCceeEEEEEccccccccH---HHHHHHh-ccCCCEEEEEecccCcch--------HHH--------------
Confidence 33344445789999999998875422 2344455 899999999999754321 000
Q ss_pred HHhhCCCCCCCceEEE--EcC-CCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEE-EEE--e-C--CEEEEEEEc
Q 027283 112 MRALSSPPFKNYQIWW--SLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVI-LAE--F-E--TFYLLNTYA 182 (225)
Q Consensus 112 ~~~l~~~~~~gy~~~~--~~~-~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l-~~~--~-~--~~~v~~vY~ 182 (225)
+ ...||...+ ... ..+.+|+||+||.++. .+ ..+.. .......+|.+ .++ + + .+.|+|+|+
T Consensus 88 ---~---~~~~~~~~~~~~~~~~~~~~GvaiLSR~pi~--~~-~~~~~-~~~~~~~~r~~l~a~~~~~~g~~l~v~ntHl 157 (263)
T PRK05421 88 ---A---TANYLAADQAPAFVLPQHPSGVMTLSKAHPV--YC-CPLRE-REPWLRLPKSALITEYPLPNGRTLLVVNIHA 157 (263)
T ss_pred ---h---hcccchHHhccccccCCCccceeEeeecccc--ee-eccCC-CCccccCcceeEEEEEEeCCCCEEEEEEECc
Confidence 0 012332211 211 3457899999999742 22 11221 01111123433 333 3 2 489999999
Q ss_pred cCCCCCCccccHHHHHHHHHHHHHHHHhcCCCCEEEEeccCC
Q 027283 183 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNV 224 (225)
Q Consensus 183 P~~~~~~~~~~~~~r~~~~~~L~~~l~~~~~~p~Il~GDFN~ 224 (225)
.+.+.. ...+..+++.|.+++... ..|+|+|||||+
T Consensus 158 ~~~~~~-----~~~r~~q~~~l~~~~~~~-~~p~Il~GDFN~ 193 (263)
T PRK05421 158 INFSLG-----VDVYSKQLEPIGDQIAHH-SGPVILAGDFNT 193 (263)
T ss_pred cccCcC-----hHHHHHHHHHHHHHHHhC-CCCEEEEccccc
Confidence 754321 123566777788887664 569999999996
No 7
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.49 E-value=5.5e-13 Score=110.07 Aligned_cols=147 Identities=25% Similarity=0.390 Sum_probs=73.9
Q ss_pred EEEeCCcchhhh--hcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCCCC
Q 027283 45 VTWNANSLLLRV--KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFKN 122 (225)
Q Consensus 45 itwNv~g~~~~~--~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~g 122 (225)
+||||++...+. .+....+.++|..++||||||||+...... ..+ ...+. ...+
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~--------~~~--------------~~~~~--~~~~ 56 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELDPDIIALQEVRNDDLS--------ELL--------------EEQLR--GYLG 56 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT-SEEEEEEEESHHHH--------HHH--------------HHHHH--TCTT
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcCCCEEEEecchhhhhh--------hhh--------------hhhcc--cccc
Confidence 699999943221 011146999999999999999999854210 000 11221 1234
Q ss_pred c-eEEEEcCCC----CcceEEEEEccCCCcceEEecCCcccccCCCCCCEEE-----------EE--eCCEEEEEEEccC
Q 027283 123 Y-QIWWSLADS----KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVIL-----------AE--FETFYLLNTYAPN 184 (225)
Q Consensus 123 y-~~~~~~~~~----g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~-----------~~--~~~~~v~~vY~P~ 184 (225)
+ ...+..... +..|++|++|.++.... ...+. .....+..+. +. ...+.|+++|+|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~H~~~ 131 (249)
T PF03372_consen 57 YYGSFWPGNSPPSDAGGYGVAILSRSPIFSSV-SYVFS----LFSKPGIRIFRRSSKSKGIVPVSINGKPITVVNVHLPS 131 (249)
T ss_dssp HEEEEEETSSSTTCSSSEEEEEEESSCCCEEE-EEEEE----EESSSTTCEEEEEEEEEEEEEEEEETEEEEEEEEETTS
T ss_pred cccceeccccccccccCceEEEEEcccccccc-ccccc----cccccccccccccccccccccccccceEEEeeeccccc
Confidence 2 333332221 24699999999752211 11111 0011111111 00 1257899999987
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHhcCCCCEEEEeccCC
Q 027283 185 NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNV 224 (225)
Q Consensus 185 ~~~~~~~~~~~~r~~~~~~L~~~l~~~~~~p~Il~GDFN~ 224 (225)
... .+.....++++.+..........|+|||||||+
T Consensus 132 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~ 167 (249)
T PF03372_consen 132 SND----ERQEQWRELLARIQKIYADNPNEPVIVMGDFNS 167 (249)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHTSSCCEEEEEEE-SS
T ss_pred cch----hhhhhhhhhhhhhhhcccccccceEEEEeeccc
Confidence 442 111112233444433333222347999999996
No 8
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.48 E-value=2.4e-12 Score=111.45 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=98.1
Q ss_pred CCCcEEEEEeCCcchhhhhcChh-HHHHHHhhc-CCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhC
Q 027283 39 KDPLKFVTWNANSLLLRVKNNWP-EFSNFITTF-DPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (225)
Q Consensus 39 ~~~lkIitwNv~g~~~~~~~~~~-~l~~~i~~~-~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 116 (225)
-.+.++.|||++|........|. .+..++... ++||+++||+-..+.......+..+...- .-+-.|+.. .+.
T Consensus 22 ~~~~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~--~~~v~ey~w---~l~ 96 (271)
T PRK15251 22 LEDYKVATWNLQGSSASTESKWNVNVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGV--GIPIDEYTW---NLG 96 (271)
T ss_pred cccceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCEEEEEecCCCcccccccccccccccc--ccCcccEEE---Ecc
Confidence 45789999999998544333343 688888865 69999999996544320000000000000 000000100 011
Q ss_pred CCCCCCceEEEEcC---CCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCcccc
Q 027283 117 SPPFKNYQIWWSLA---DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS 193 (225)
Q Consensus 117 ~~~~~gy~~~~~~~---~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~ 193 (225)
....+|+.+++..+ ..|..|+||+||.+ +.++ +.++. .......++.++++.+.++++|+...+..
T Consensus 97 ~~srpgm~YiY~~aiD~~ggr~glAIlSr~~--a~~~-~~l~~---p~~~~Rpilgi~i~~~~ffstH~~a~~~~----- 165 (271)
T PRK15251 97 TRSRPNQVYIYYSRVDVGANRVNLAIVSRRR--ADEV-IVLRP---PTVASRPIIGIRIGNDVFFSIHALANGGT----- 165 (271)
T ss_pred CccCCCceEEEEecccCCCCceeEEEEeccc--ccce-EEecC---CCCcccceEEEEecCeEEEEeeecCCCCc-----
Confidence 11224555444332 24577999999996 3332 33331 12234557788888899999999877432
Q ss_pred HHHHHHHHHHHHHHHH-hcCCCCEEEEeccCC
Q 027283 194 FQRRRKWDKRIQEFVL-QCSGKPLIWCGDLNV 224 (225)
Q Consensus 194 ~~~r~~~~~~L~~~l~-~~~~~p~Il~GDFN~ 224 (225)
.+...++.+.+++. .....||++|||||.
T Consensus 166 --da~aiV~~I~~~f~~~~~~~pw~I~GDFNr 195 (271)
T PRK15251 166 --DAGAIVRAVHNFFRPNMRHINWMIAGDFNR 195 (271)
T ss_pred --cHHHHHHHHHHHHhhccCCCCEEEeccCCC
Confidence 25677788888876 434469999999995
No 9
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.47 E-value=1.3e-12 Score=114.65 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=85.9
Q ss_pred cEEEEEeCCcchhh------hhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhh
Q 027283 42 LKFVTWNANSLLLR------VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (225)
Q Consensus 42 lkIitwNv~g~~~~------~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 115 (225)
|||+||||+.+... ..++.+.+...+...+||||||||+...... ..+ ++.|
T Consensus 1 lkVmtyNv~~l~~~~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~--------~~l--------------~~~L 58 (283)
T TIGR03395 1 IKILSHNVYMLSTNLYPNWGQMERADLIASADYIKNQDVVILNEAFDTSAS--------KRL--------------LDNL 58 (283)
T ss_pred CeEEEEEeeeecccccCCccHhHHHHHHHHhhcccCCCEEEEecccchHHH--------HHH--------------HHHH
Confidence 68999999753211 1111156666677789999999999643210 011 1112
Q ss_pred CCCCCCCceEEEE---------------cCCCCcceEEEEEccCCCcceEEecCCccc-ccCCCCCCEEEEEeC----CE
Q 027283 116 SSPPFKNYQIWWS---------------LADSKYAGTALLVKKCFQPKKVSFSLEKTA-LKYEPDGRVILAEFE----TF 175 (225)
Q Consensus 116 ~~~~~~gy~~~~~---------------~~~~g~~GvAIlsr~~i~p~~~~~~~~~~~-~~~~~~gr~l~~~~~----~~ 175 (225)
. ...+|...+. ......+|++||||+||.... .+.++... ........++.+++. .+
T Consensus 59 ~--~~yp~~~~~~g~~~~g~~~~~g~~~~~~~~~~G~~iLSr~Pi~~~~-~~~f~~~~~~d~~~~kg~l~a~i~~~g~~~ 135 (283)
T TIGR03395 59 R--EEYPYQTDVIGRSKKGWDKTLGNYSSSALEDGGVAIVSKWPIEEKI-QYIFNKGCGADNLSNKGFAYVKINKNGKKF 135 (283)
T ss_pred H--hhCCceEeecccccccchhccccccccCccCCEEEEEECCCccccE-EEEccCCCCCccccCCceEEEEEecCCeEE
Confidence 1 0012222111 011235699999999863321 12222100 001012234555542 58
Q ss_pred EEEEEEccCCCCCCc-cccHHHHHHHHHHHHHHHHhc---CCCCEEEEeccCC
Q 027283 176 YLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNV 224 (225)
Q Consensus 176 ~v~~vY~P~~~~~~~-~~~~~~r~~~~~~L~~~l~~~---~~~p~Il~GDFN~ 224 (225)
.|+++|+........ ......|..+++.|.+++... .+.|+|++||||+
T Consensus 136 ~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~ 188 (283)
T TIGR03395 136 HVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNV 188 (283)
T ss_pred EEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCC
Confidence 999999965432100 011346888899999998652 2568999999997
No 10
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.29 E-value=3.2e-11 Score=103.73 Aligned_cols=151 Identities=23% Similarity=0.298 Sum_probs=85.0
Q ss_pred cEEEEEeCCcchhh--hhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCC
Q 027283 42 LKFVTWNANSLLLR--VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (225)
Q Consensus 42 lkIitwNv~g~~~~--~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 119 (225)
++|+|||++-.... .+-..+.+.+.+.+..+||+||||+.......+. .+ .+. .....+.
T Consensus 10 ~~v~TyNih~~~~~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~------~~-~~~------~~~~~~~----- 71 (259)
T COG3568 10 FKVLTYNIHKGFGAFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRD------GL-LDL------PHLLGRL----- 71 (259)
T ss_pred eEEEEEEEEEccCccCceecHHHHHHHHHhhccCeeeeeccccccccccc------cc-chh------HHHHHHh-----
Confidence 89999999844332 2223478999999999999999999864431111 11 000 0000111
Q ss_pred CCCceEEEEc------CCCCcceEEEEEccCCCcceE-EecCCcccccCCCCCC-EEEEEe-----CCEEEEEEEccCCC
Q 027283 120 FKNYQIWWSL------ADSKYAGTALLVKKCFQPKKV-SFSLEKTALKYEPDGR-VILAEF-----ETFYLLNTYAPNNG 186 (225)
Q Consensus 120 ~~gy~~~~~~------~~~g~~GvAIlsr~~i~p~~~-~~~~~~~~~~~~~~gr-~l~~~~-----~~~~v~~vY~P~~~ 186 (225)
.+.++.|.. ...+..|++|+|+.++. .+ ...++. ....+.| ++.+++ ..+.|+|+|+--..
T Consensus 72 -~~~~~~~~~~~~~a~~~~~~~GnaiLS~~pi~--~v~~~~lp~---~~~~~~Rgal~a~~~~~~g~~l~V~~~HL~l~~ 145 (259)
T COG3568 72 -GLAPYWWSGAAFGAVYGEGQHGNAILSRLPIR--DVENLALPD---PTGLEPRGALLAEIELPGGKPLRVINAHLGLSE 145 (259)
T ss_pred -cCCccccchhhhhhhcccceeeeEEEecCccc--chhhccCCC---CCCCCCceeEEEEEEcCCCCEEEEEEEeccccH
Confidence 122222221 12357799999988641 11 123331 0123445 334433 26999999994211
Q ss_pred CCCccccHHHHHHHHHHHHHHHHhcCCCCEEEEeccCC
Q 027283 187 WKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNV 224 (225)
Q Consensus 187 ~~~~~~~~~~r~~~~~~L~~~l~~~~~~p~Il~GDFN~ 224 (225)
+.|.+++..|.+.+.-...+|+|+|||||.
T Consensus 146 --------~~R~~Q~~~L~~~~~l~~~~p~vl~GDFN~ 175 (259)
T COG3568 146 --------ESRLRQAAALLALAGLPALNPTVLMGDFNN 175 (259)
T ss_pred --------HHHHHHHHHHHhhccCcccCceEEEccCCC
Confidence 246677777766322223459999999994
No 11
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.26 E-value=9.8e-11 Score=100.32 Aligned_cols=151 Identities=21% Similarity=0.316 Sum_probs=90.2
Q ss_pred CCCCcEEEEEeCCcchhh--hhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhh
Q 027283 38 KKDPLKFVTWNANSLLLR--VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (225)
Q Consensus 38 ~~~~lkIitwNv~g~~~~--~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 115 (225)
...-+.+++||+.|+... ..|. .++.++|+.++||||||||+....-+ .++.+
T Consensus 96 ~g~~~S~~~WnidgLdln~l~~RM-rAv~H~i~l~sPdiiflQEV~p~~y~------------------------~~~K~ 150 (349)
T KOG2756|consen 96 QGSMFSLITWNIDGLDLNNLSERM-RAVCHYLALYSPDVIFLQEVIPPYYS------------------------YLKKR 150 (349)
T ss_pred cccEEEEEEeeccccccchHHHHH-HHHHHHHHhcCCCEEEEeecCchhhH------------------------HHHHh
Confidence 345578999999997543 1111 58999999999999999999754321 12333
Q ss_pred CCCCCCCceEEEEcCCCCcceEEEEEccCCCcceE-EecCCcccccCCCCCC---EEEEEeC--CEEEEEEEccCCCCCC
Q 027283 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV-SFSLEKTALKYEPDGR---VILAEFE--TFYLLNTYAPNNGWKE 189 (225)
Q Consensus 116 ~~~~~~gy~~~~~~~~~g~~GvAIlsr~~i~p~~~-~~~~~~~~~~~~~~gr---~l~~~~~--~~~v~~vY~P~~~~~~ 189 (225)
. .-|.++.. ...++.|.+++....+..... ...+++ ...+| ++.+.++ .+.+.+.|+-....+.
T Consensus 151 ~----s~y~i~~~-~~~~~~~~~~l~~s~~~Vks~~~i~F~N-----S~M~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h~ 220 (349)
T KOG2756|consen 151 S----SNYEIITG-HEEGYFTAIMLKKSRVKVKSQEIIPFPN-----SKMMRNLLIVEVNVSGNKLCLMTSHLESTRGHA 220 (349)
T ss_pred h----hheeEEEe-ccceeeeeeeeehhhcCccccceeccCc-----chhhheeEEEEEeecCceEEEEeccccCCCCCC
Confidence 1 33444433 344577888887665432221 122332 23445 3344554 4778888885554432
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCEEEEeccCC
Q 027283 190 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNV 224 (225)
Q Consensus 190 ~~~~~~~r~~~~~~L~~~l~~~~~~p~Il~GDFN~ 224 (225)
. ++.+.=..-++++++.++++++..+|++||+|-
T Consensus 221 P-~r~~qF~~~~~k~~EaIe~lPnA~ViFGGD~Nl 254 (349)
T KOG2756|consen 221 P-ERMNQFKMVLKKMQEAIESLPNATVIFGGDTNL 254 (349)
T ss_pred h-HHHHHHHHHHHHHHHHHHhCCCceEEEcCcccc
Confidence 1 111111122356667777778889999999995
No 12
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.25 E-value=2.2e-10 Score=109.23 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=86.4
Q ss_pred CCCCcEEEEEeCCcch--------------hhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhh
Q 027283 38 KKDPLKFVTWNANSLL--------------LRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKA 103 (225)
Q Consensus 38 ~~~~lkIitwNv~g~~--------------~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~ 103 (225)
....+||+||||..-. ..+..++..|.+.|..++||||||||+....- .++
T Consensus 251 ~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~---------~d~------ 315 (606)
T PLN03144 251 SAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHF---------EEF------ 315 (606)
T ss_pred CCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHH---------HHH------
Confidence 4568999999998421 01111127899999999999999999953221 010
Q ss_pred hHHHHHHHHHhhCCCCCCCceEEEEcCC--------CCcceEEEEEccC-CCcceE-EecCCcc-c---cc------C-C
Q 027283 104 SREEKLILMRALSSPPFKNYQIWWSLAD--------SKYAGTALLVKKC-FQPKKV-SFSLEKT-A---LK------Y-E 162 (225)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~gy~~~~~~~~--------~g~~GvAIlsr~~-i~p~~~-~~~~~~~-~---~~------~-~ 162 (225)
+ ...|. ..||..++.... .+..|+|||+|+. |..++. .+.+... . +. . +
T Consensus 316 ----~---~p~L~---~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~ 385 (606)
T PLN03144 316 ----F---APELD---KHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKA 385 (606)
T ss_pred ----H---Hhhhh---hcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchh
Confidence 0 12232 258876654321 1245999999887 433221 1111100 0 00 0 0
Q ss_pred CCCC--------EEEEEeC-------------CEEEEEEEccCCCCCCccccHHHHHHHHHHHHHHHHhc---CCCCEEE
Q 027283 163 PDGR--------VILAEFE-------------TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIW 218 (225)
Q Consensus 163 ~~gr--------~l~~~~~-------------~~~v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~~---~~~p~Il 218 (225)
.-.| ++.++.. .|.|+|+|+...... -..|..+...|.+.+++. .+.|+|+
T Consensus 386 ~l~Rl~kdNVAliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~-----~dvRl~Q~~~Ll~~l~~~~~~~~~PvIl 460 (606)
T PLN03144 386 ALNRLLKDNVALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQEL-----KDVKLWQVHTLLKGLEKIAASADIPMLV 460 (606)
T ss_pred hhhhhccCcEEEEEEEEEecccccccCCCCccEEEEEEeeeccCCcc-----chhHHHHHHHHHHHHHHHhhcCCCceEE
Confidence 0112 1122221 278999998433221 113556666666666553 3679999
Q ss_pred EeccCC
Q 027283 219 CGDLNV 224 (225)
Q Consensus 219 ~GDFN~ 224 (225)
|||||+
T Consensus 461 cGDFNS 466 (606)
T PLN03144 461 CGDFNS 466 (606)
T ss_pred eccCCC
Confidence 999997
No 13
>PTZ00297 pantothenate kinase; Provisional
Probab=99.21 E-value=2.7e-10 Score=117.91 Aligned_cols=164 Identities=15% Similarity=0.162 Sum_probs=87.9
Q ss_pred CCCCcEEEEEeCCcchhhh-hcChhHHHHHHhhc-CCcEEEEeeeeCCCCC-CCCCCcccccccchhhhhHHHHHHH-HH
Q 027283 38 KKDPLKFVTWNANSLLLRV-KNNWPEFSNFITTF-DPDVIALQEVRMPAAG-SKDAPKNHQELKDDTKASREEKLIL-MR 113 (225)
Q Consensus 38 ~~~~lkIitwNv~g~~~~~-~~~~~~l~~~i~~~-~pDIv~LQEt~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~-~~ 113 (225)
...++||+|||++.+.... ....+.+..+|... +||||||||+-..... ++.. .+. ..|-. .+
T Consensus 7 ~~~~l~VlTyNv~~~~~~~~~~~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~----~~~---------~~~~~~~~ 73 (1452)
T PTZ00297 7 GCAQARVLSYNFNILPRGCGGFQHERIETFLASVDAYDVVLLQEVYAASVLPYFLQ----KQL---------CFQKMLVD 73 (1452)
T ss_pred CCCceEEEEEEccccCCCcccccHHHHHHHHHhccCCCEEEEeccccccccccccc----ccc---------hhhHHHHH
Confidence 3457999999998542111 11127899999984 7899999999764311 1100 110 00100 12
Q ss_pred hhCCCCCCCceEEEEc--C---C------CCcceEEEEEccCCCcceEEecCCcccccCCCCCC-EEEE--EeC------
Q 027283 114 ALSSPPFKNYQIWWSL--A---D------SKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILA--EFE------ 173 (225)
Q Consensus 114 ~l~~~~~~gy~~~~~~--~---~------~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr-~l~~--~~~------ 173 (225)
.+. ..||..+... + . -..+|+||+||+||.... .+.++..........| ++.+ +++
T Consensus 74 ~l~---~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AILSR~PI~~~~-~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~ 149 (1452)
T PTZ00297 74 ELK---ARGFHHYVISKQPSYLTMLRYNVCSDNGLIIASRFPIWQRG-SYTFRNHERGEQSVRRGCLFAEVEVPLAEGGS 149 (1452)
T ss_pred HHH---hcCCceeEeecCccccccccCccccCCEEEEEECCChhhce-eeecCcccccccccccceEEEEEEccccCCCC
Confidence 221 1476443321 1 0 146799999999863221 2333310000001223 3333 332
Q ss_pred -CEEEEEEEccCCCCCCccccHHHHHHHHHHHHHHHHh-----------cCCCCEEEEeccCC
Q 027283 174 -TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-----------CSGKPLIWCGDLNV 224 (225)
Q Consensus 174 -~~~v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~-----------~~~~p~Il~GDFN~ 224 (225)
.+.++++|+-..... ..|..+.+++.++++. ....|+|++||||+
T Consensus 150 ~~v~v~~tHL~~~~~~------~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~ 206 (1452)
T PTZ00297 150 QRIVFFNVHLRQEDSL------PSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNI 206 (1452)
T ss_pred ceEEEEEeCCCCCCCc------chHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCC
Confidence 499999999654331 1244556666666553 13469999999994
No 14
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.18 E-value=6.8e-10 Score=102.04 Aligned_cols=156 Identities=22% Similarity=0.210 Sum_probs=89.6
Q ss_pred CCcEEEEEeCCcchh----------------hhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhh
Q 027283 40 DPLKFVTWNANSLLL----------------RVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKA 103 (225)
Q Consensus 40 ~~lkIitwNv~g~~~----------------~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~ 103 (225)
-.++|+||||-.... .+.++...|...+...+|||+||||+......
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~----------------- 177 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYP----------------- 177 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhccCChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhH-----------------
Confidence 689999999964321 01112267889999999999999999865431
Q ss_pred hHHHHHHHHHhhCCCCCCCceEEEEcCC-CCcceEEEEEccC-CCcce---EEecCCc-ccccCCCCCCEEEEEe----C
Q 027283 104 SREEKLILMRALSSPPFKNYQIWWSLAD-SKYAGTALLVKKC-FQPKK---VSFSLEK-TALKYEPDGRVILAEF----E 173 (225)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~gy~~~~~~~~-~g~~GvAIlsr~~-i~p~~---~~~~~~~-~~~~~~~~gr~l~~~~----~ 173 (225)
+.++. .+ ...||..++.... .+.+||||+++.. |.-+. +.|.... ...-.+--+.+|.+.+ +
T Consensus 178 --~~~~~---~~---~~lGy~~~~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~ 249 (495)
T KOG2338|consen 178 --EFWQP---LL---GKLGYTGFFKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDE 249 (495)
T ss_pred --HHHHH---HH---hhcCceEEEEeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCc
Confidence 12221 22 2368987665443 4568999999875 22111 1111110 0000111233444444 1
Q ss_pred ---CEEEEEEEccCCCCCCccccHHHHHHHHHHHHHHHHhc-----CCCCEEEEeccCCC
Q 027283 174 ---TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-----SGKPLIWCGDLNVR 225 (225)
Q Consensus 174 ---~~~v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~~-----~~~p~Il~GDFN~~ 225 (225)
++.|.|+|+=..... -..|..+...|.+.+++. ...|+++|||||..
T Consensus 250 ~sq~ilVanTHLl~np~~-----~~vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~ 304 (495)
T KOG2338|consen 250 SSQGILVANTHLLFNPSR-----SDVRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTE 304 (495)
T ss_pred ccCceEEEeeeeeecCcc-----cchhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCC
Confidence 688999886322111 013555555555555542 25699999999974
No 15
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.12 E-value=3.4e-09 Score=92.63 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=80.1
Q ss_pred CCcEEEEEeCCcchhhhhcCh----hHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhh
Q 027283 40 DPLKFVTWNANSLLLRVKNNW----PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (225)
Q Consensus 40 ~~lkIitwNv~g~~~~~~~~~----~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 115 (225)
..|+|+||||+.+... +..+ +.+.++|+ ++||+++||+...... .+. ..+..|
T Consensus 16 ~~l~I~SfNIr~fgd~-k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~---------~l~-----------~ll~~L 72 (276)
T smart00476 16 ASLRICAFNIQSFGDS-KMSNATLMSIIVKILS--RYDIALVQEVRDSDLS---------AVP-----------KLMDQL 72 (276)
T ss_pred CcEEEEEEECcccCCc-cccHHHHHHHHHHHhc--cCCEEEEEEeecchhH---------HHH-----------HHHHHH
Confidence 4699999999965422 2222 34555554 8999999999865421 110 011222
Q ss_pred CCCCCCCceEEEEcCCCC--cc-eEEEEEccCC-CcceEEecCCcc----cccCCCCCCEEEEEe-----CCEEEEEEEc
Q 027283 116 SSPPFKNYQIWWSLADSK--YA-GTALLVKKCF-QPKKVSFSLEKT----ALKYEPDGRVILAEF-----ETFYLLNTYA 182 (225)
Q Consensus 116 ~~~~~~gy~~~~~~~~~g--~~-GvAIlsr~~i-~p~~~~~~~~~~----~~~~~~~gr~l~~~~-----~~~~v~~vY~ 182 (225)
......+|.++.+....+ ++ -.|+++|..- .++. .+.++.. ...+..+.-++.... ..|.++++|.
T Consensus 73 n~~~~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~-~~~f~d~~~~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H~ 151 (276)
T smart00476 73 NSDSPNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLD-SYLYDDGCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHT 151 (276)
T ss_pred hhcCCCCceEEecCCCCCCCCCEEEEEEEecceEEEcc-cceecCCCCCccccccccceEEEEEeCCCCCccEEEEEecC
Confidence 111123687665432211 12 4889998862 2211 1222210 011223333333332 2599999998
Q ss_pred cCCCCCCccccHHHHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Q 027283 183 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVR 225 (225)
Q Consensus 183 P~~~~~~~~~~~~~r~~~~~~L~~~l~~~~~~p~Il~GDFN~~ 225 (225)
-+.... ++-...++-+.+..++....|+|++||||+.
T Consensus 152 ~p~~~~------~e~~aL~~v~~~~~~~~~~~~villGDFNa~ 188 (276)
T smart00476 152 TPEAAV------AEIDALYDVYLDVRQKWGTEDVIFMGDFNAG 188 (276)
T ss_pred ChHHHH------HHHHHHHHHHHHHHHhhccCCEEEEccCCCC
Confidence 654321 1111112223333333357899999999973
No 16
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=98.97 E-value=1.7e-09 Score=96.00 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=93.2
Q ss_pred CCCCcEEEEEeCCcchh--hhhc-ChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHh
Q 027283 38 KKDPLKFVTWNANSLLL--RVKN-NWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (225)
Q Consensus 38 ~~~~lkIitwNv~g~~~--~~~~-~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (225)
..-.+||+|.|++|+.- ..+. +-..+.+++.+...||+.|||+|...+ + ++..+.
T Consensus 5 ~a~~lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD-~---------------------~~L~~~ 62 (422)
T KOG3873|consen 5 LALELRILTLNIWGIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQED-F---------------------EYLQSG 62 (422)
T ss_pred hhheeeeeEeeccccccccchhHHHHHHHhHHHhhcccchhhHHHHHHHHH-H---------------------HHHHHh
Confidence 45679999999999742 1111 115678889999999999999986542 1 221122
Q ss_pred hCCCCCCCceEEEEcCCCCcceEEEEEccCCCcce-EEecCCccc---ccCC-CCCCEEEE---EeCC--EEEEEEEccC
Q 027283 115 LSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKK-VSFSLEKTA---LKYE-PDGRVILA---EFET--FYLLNTYAPN 184 (225)
Q Consensus 115 l~~~~~~gy~~~~~~~~~g~~GvAIlsr~~i~p~~-~~~~~~~~~---~~~~-~~gr~l~~---~~~~--~~v~~vY~P~ 184 (225)
.. ....|..++..+-- ..|++++||+||.-.. -.|.+++.+ .--| ..|+.|.+ .+++ +.+.|+|++.
T Consensus 63 ~s--s~yPysh~FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntHLHA 139 (422)
T KOG3873|consen 63 CS--SVYPYSHYFHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTHLHA 139 (422)
T ss_pred cc--ccCchHHhhhcccc-cCceEEeecCchhhhhhhccccCCccceeeeccccccceeEEEEEeeCCEEeeeeehhccc
Confidence 21 11345444443333 4799999999863211 124443311 1111 33555532 2344 4455554443
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHhc--CCCCEEEEeccCC
Q 027283 185 NGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNV 224 (225)
Q Consensus 185 ~~~~~~~~~~~~r~~~~~~L~~~l~~~--~~~p~Il~GDFN~ 224 (225)
.....++.=..+|..+...+.++++.. .+.-+|++||||+
T Consensus 140 eY~rq~D~YL~HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~ 181 (422)
T KOG3873|consen 140 EYDRQNDEYLCHRVAQAWDLAQFIRATRQNADVVILAGDLNM 181 (422)
T ss_pred cccccCchhhhHHHHHHHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 322212334456777777777777653 5678999999997
No 17
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.76 E-value=2.2e-07 Score=82.62 Aligned_cols=162 Identities=18% Similarity=0.187 Sum_probs=87.1
Q ss_pred CcEEEEEeCCcchhhhhcChhHHHHHHhh-------cCCcE--EEEeeee-CCCCCCCCCCcccccccchhhhhHHHHHH
Q 027283 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT-------FDPDV--IALQEVR-MPAAGSKDAPKNHQELKDDTKASREEKLI 110 (225)
Q Consensus 41 ~lkIitwNv~g~~~~~~~~~~~l~~~i~~-------~~pDI--v~LQEt~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 110 (225)
.+.++||||+|...... ..+..++.. ..||| |.|||+- ........ .+....+.+...
T Consensus 4 ~v~v~TwNv~~~~~~p~---~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~---------~~~~~~~~W~~~ 71 (310)
T smart00128 4 KVLVGTWNVGGLKADPK---VDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLE---------TIAGKERLWSKL 71 (310)
T ss_pred EEEEEEEECCCccCCCh---hhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhh---------ccchhHHHHHHH
Confidence 46788999999641111 467777765 67999 6699993 22211100 000001111222
Q ss_pred HHHhhCCCCCCCceEEEEcCCCCcceEEEEEccCCCcc--e-----EEecCCcccccCCCCCCEEEEEeCC--EEEEEEE
Q 027283 111 LMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK--K-----VSFSLEKTALKYEPDGRVILAEFET--FYLLNTY 181 (225)
Q Consensus 111 ~~~~l~~~~~~gy~~~~~~~~~g~~GvAIlsr~~i~p~--~-----~~~~~~~~~~~~~~~gr~l~~~~~~--~~v~~vY 181 (225)
+...|. ....|...... .-+.-++.|++|..+.+. . +..++.. ...+..+..+.+.+.+ +.++++|
T Consensus 72 i~~~l~--~~~~Y~~v~~~-~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~--~~~nKG~v~i~~~~~~~~~~fv~~H 146 (310)
T smart00128 72 IESSLN--GDGQYNVLAKV-RLVGILVLVFVKANHLVYIKDVETFTVKTGMGG--LWGNKGAVAVRFKLSDTSFCFVNSH 146 (310)
T ss_pred HHHhcC--CCCceEEEeee-eecceEEEEEEehhhcCccceeEeeeeeccccc--eeecCceEEEEEEEcCcEEEEEeec
Confidence 223331 11456554432 223346778888775221 1 1223321 1124455566666654 9999999
Q ss_pred ccCCCCCCccccHHHHHHHHHHHHHHHHh--------cCCCCEEEEeccCC
Q 027283 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQ--------CSGKPLIWCGDLNV 224 (225)
Q Consensus 182 ~P~~~~~~~~~~~~~r~~~~~~L~~~l~~--------~~~~p~Il~GDFN~ 224 (225)
++++.. ..+.|...+..+.+.+.- .....+|++||||-
T Consensus 147 L~a~~~-----~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNy 192 (310)
T smart00128 147 LAAGAS-----NVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNF 192 (310)
T ss_pred cccccc-----hhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcce
Confidence 998764 234566666666544421 12578999999995
No 18
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=98.72 E-value=3.1e-08 Score=88.52 Aligned_cols=151 Identities=33% Similarity=0.444 Sum_probs=109.2
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCCC
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (225)
+.|..|||.+++...+. .-..++....+|++|+|||+..-...+. . . +...
T Consensus 64 ~~i~~~~i~~~~~~~~~---~~~~~~~~~l~d~~~~~~t~~~i~~~~~------~------------------~--~~~~ 114 (335)
T KOG1294|consen 64 LNICPWDIAGLEACEKF---SGDPEISSELRDLQCLLETKCTIDSGPC------S------------------H--PTEK 114 (335)
T ss_pred eecCchhhhhhhhhhcc---ccchhccccchhhhhhhhccceeccCcc------e------------------e--cccC
Confidence 57888999998877654 3566777889999999999986433221 0 0 0236
Q ss_pred Cc-eEEEEcCCC--CcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccccHHHH-
Q 027283 122 NY-QIWWSLADS--KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR- 197 (225)
Q Consensus 122 gy-~~~~~~~~~--g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~~~r- 197 (225)
|| +.+|..+.+ ++.|++.+++.. |..+.+++....+.+++.|++|.+++..+.+++.|.|+..... ...+++
T Consensus 115 ~~~~~~~~~~~~~~~y~~~~~~~~~~--p~~v~~~~~~~~s~h~~~g~~i~~e~e~~~l~~~y~p~~~~~~--~~~~~~~ 190 (335)
T KOG1294|consen 115 GYTHSLLSCASKKDGYSGEIDYSKFK--PLKVHYGFGAMGSDHRPVGRVIIAEFEIFILINTYVPNIGGGL--VNLVYRI 190 (335)
T ss_pred CcccceeecccccCCccceeeeeecc--cceeeecccccCCccCccceEEEEeecceeeccccCccccccc--chhhhhh
Confidence 77 556665433 577898888874 7777777763235688999999999999999999999987653 444455
Q ss_pred -HHHHHHHHHHHHhcC-----CCCEEEEeccCCC
Q 027283 198 -RKWDKRIQEFVLQCS-----GKPLIWCGDLNVR 225 (225)
Q Consensus 198 -~~~~~~L~~~l~~~~-----~~p~Il~GDFN~~ 225 (225)
..|-..+...+.+.. ..+++.+||.|++
T Consensus 191 ~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs 224 (335)
T KOG1294|consen 191 LDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVS 224 (335)
T ss_pred hhhhHHHHHHHhhhccccccccCcceeccccccc
Confidence 566667777776642 2479999999974
No 19
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.30 E-value=2e-06 Score=75.71 Aligned_cols=154 Identities=16% Similarity=0.083 Sum_probs=88.8
Q ss_pred CCCccccCccccCCCCCcEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhh
Q 027283 25 DGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKAS 104 (225)
Q Consensus 25 ~~~~~~~~~~~~~~~~~lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~ 104 (225)
-|+.....+- ....+++++.|++.-+... ..+...+...++|++.+||+..-....
T Consensus 75 ~g~~~~~~~~---~~~~~~~l~~N~r~~n~~~----~k~Lsl~~~~~~D~v~~~E~~~~~~~~----------------- 130 (309)
T COG3021 75 AGEPLLAYQA---DQRLLWNLQKNVRFDNASV----AKLLSLIQQLDADAVTTPEGVQLWTAK----------------- 130 (309)
T ss_pred cCcccccccc---cchhhhhhhhhccccCcCH----HHHHHHHhhhCcchhhhHHHHHHhHhH-----------------
Confidence 3454444433 6677899999987655444 467788888889999999996432211
Q ss_pred HHHHHHHHHhhCCCCCCCceEEEEcCCC-CcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEe--C--CEEEEE
Q 027283 105 REEKLILMRALSSPPFKNYQIWWSLADS-KYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF--E--TFYLLN 179 (225)
Q Consensus 105 ~~~~~~~~~~l~~~~~~gy~~~~~~~~~-g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~--~--~~~v~~ 179 (225)
. ..++ ..|..+..+.+. +..|+++++|.+ ++-....-+ -...+.++.+.+.. + .+.+++
T Consensus 131 ---~----~~l~----~~yP~~~~~~~~~~~~~~a~~sr~~--~~~~~~~e~---~~~~pk~~~~t~~~~~~g~~l~v~~ 194 (309)
T COG3021 131 ---V----GALA----AQYPAFILCQHPTGVFTLAILSRRP--CCPLTEAEP---WLRLPKSALATAYPLPDGTELTVVA 194 (309)
T ss_pred ---H----HHHH----HhCCceeecCCCCCeeeeeeccccc--cccccccCc---cccCCccceeEEEEcCCCCEEEEEe
Confidence 0 1121 234333332322 556899999885 111111111 01234555555443 2 477888
Q ss_pred EEccCCCCCCccccHHHHHHHHHHHHHHHHhcCCCCEEEEeccCC
Q 027283 180 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNV 224 (225)
Q Consensus 180 vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~~~~~p~Il~GDFN~ 224 (225)
+|.-+.... ...+| .++.+|.+.+.. .+.|+|++||||+
T Consensus 195 lh~~~~~~~----~~~~~-~ql~~l~~~i~~-~~gpvIlaGDfNa 233 (309)
T COG3021 195 LHAVNFPVG----TDPQR-AQLLELGDQIAG-HSGPVILAGDFNA 233 (309)
T ss_pred eccccccCC----ccHHH-HHHHHHHHHHHc-CCCCeEEeecCCC
Confidence 887644332 22234 555566666654 3589999999997
No 20
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=98.06 E-value=6.9e-06 Score=61.56 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=28.4
Q ss_pred EEEEEEEccCCCCCCccccHHHHHHHHHHHHHHHHhcCCCCEEEEeccCC
Q 027283 175 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNV 224 (225)
Q Consensus 175 ~~v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~~~~~p~Il~GDFN~ 224 (225)
++|+++|+|+... +..+++.|.+++......++|++||||+
T Consensus 1 i~i~~vY~pp~~~---------~~~~~~~l~~~~~~~~~~~~Ii~GDFN~ 41 (119)
T PF14529_consen 1 ITIISVYAPPSSE---------REEFFDQLRQLLKNLPPAPIIIGGDFNA 41 (119)
T ss_dssp EEEEEEE--TTS----------CHHHHHHHHHHHHCCTTSSEEEEEE---
T ss_pred CEEEEEECCCCcc---------HHHHHHHHHHHHHhCCCCCEEEEeECCC
Confidence 5799999999872 3577888888887754449999999996
No 21
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0043 Score=61.63 Aligned_cols=160 Identities=16% Similarity=0.226 Sum_probs=79.2
Q ss_pred CCCcEEEEEeCCcchhhhhcChhHHHHHHhhc-------CCcEE--EEeee-eCCCCCCCCCCcccccccchhhhhHHHH
Q 027283 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTF-------DPDVI--ALQEV-RMPAAGSKDAPKNHQELKDDTKASREEK 108 (225)
Q Consensus 39 ~~~lkIitwNv~g~~~~~~~~~~~l~~~i~~~-------~pDIv--~LQEt-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 108 (225)
.-.+-+.|||||| ++...+ +.|.+||--. -+||+ .+||+ .+.+..+ +.+|.--. .-|
T Consensus 536 ~i~IfvgTfNvNG-~s~~~k--~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~i---------v~As~tk~-~~W 602 (1080)
T KOG0566|consen 536 DISIFVGTFNVNG-RSAAFK--DDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNI---------VSASTTKR-RFW 602 (1080)
T ss_pred ceEEEEEeeeccC-ccccch--hhHHhhccccccCCcCCcCcEEEEeehhhhhcCccce---------eccChHHH-HHH
Confidence 3345667999999 333333 5778886433 37765 57997 3333322 11111000 111
Q ss_pred H-HHHHhhCCCCCCCceEEEEcCCCCcceEEEE--EccCCCcc--e-----EEecCCcccccCCCCCCEEEEEe--C--C
Q 027283 109 L-ILMRALSSPPFKNYQIWWSLADSKYAGTALL--VKKCFQPK--K-----VSFSLEKTALKYEPDGRVILAEF--E--T 174 (225)
Q Consensus 109 ~-~~~~~l~~~~~~gy~~~~~~~~~g~~GvAIl--sr~~i~p~--~-----~~~~~~~~~~~~~~~gr~l~~~~--~--~ 174 (225)
. -+...| +.....|-.+++ ..-.||.++ +|..-.|. + +..|+++ +....-.|.+.+ . +
T Consensus 603 ee~i~~~L-n~~~~kYvlL~s---~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG----~tgNKGAVAIrf~~~~Ts 674 (1080)
T KOG0566|consen 603 EEKILKTL-NRYKNKYVLLRS---EQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGG----ATGNKGAVAIRFVYHATS 674 (1080)
T ss_pred HHHHHHHh-cCCCCceEEEeh---hhhheeeEEEEEcccccchhhhcccceeeccccc----ccCCCceEEEEEEecccc
Confidence 1 112333 221345655554 223476665 45432121 1 1234432 112222444443 3 6
Q ss_pred EEEEEEEccCCCCCCccccHHHHHHHHHHHHHHHHh-----c-CCCCEEEEeccCC
Q 027283 175 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-----C-SGKPLIWCGDLNV 224 (225)
Q Consensus 175 ~~v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~-----~-~~~p~Il~GDFN~ 224 (225)
|++++-|+.++.+. .++|..-+..+.+-|.= . +-..++||||||-
T Consensus 675 fCFv~SHlAAG~sn-----v~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNY 725 (1080)
T KOG0566|consen 675 FCFVCSHLAAGQSN-----VEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNY 725 (1080)
T ss_pred EEEEecccccccch-----HhhhhhhHHHHHHhccccCCccccCCceEEEecccce
Confidence 99999999887764 23344444444443321 1 3467999999994
No 22
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=96.87 E-value=0.0028 Score=56.95 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=32.7
Q ss_pred CcEEEEEeCCcchhh-------------hhcChhHHHHHHhhcCCcEEEEeeeeCCC
Q 027283 41 PLKFVTWNANSLLLR-------------VKNNWPEFSNFITTFDPDVIALQEVRMPA 84 (225)
Q Consensus 41 ~lkIitwNv~g~~~~-------------~~~~~~~l~~~i~~~~pDIv~LQEt~~~~ 84 (225)
.++|+|+|+-...-. +..+...|.+.+..+++||+||||+....
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~ 86 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADILCLQEVDAED 86 (378)
T ss_pred eeEEEehhhhhhhhccccccCCchhhhhhHHHHHHHHHHHhccCCceeeeehhhhhH
Confidence 899999999753211 11112678888999999999999997653
No 23
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=94.63 E-value=0.038 Score=50.29 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=48.3
Q ss_pred CcEEEEEeCCcchhhh--------------hcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHH
Q 027283 41 PLKFVTWNANSLLLRV--------------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASRE 106 (225)
Q Consensus 41 ~lkIitwNv~g~~~~~--------------~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (225)
.++|.|||+....-.. ..+...+.+.+...+||++||||+. ...++..
T Consensus 19 ~~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev~-~~~~~~~----------------- 80 (361)
T KOG0620|consen 19 TFTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEVD-RYHDFFS----------------- 80 (361)
T ss_pred eEEeechhhhhhhhcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeecchhh-HHHHHcc-----------------
Confidence 8999999997653211 1112567777778899999999992 1111110
Q ss_pred HHHHHHHhhCCCCCCCceEEEEc-------CCCCcceEEEEEccC
Q 027283 107 EKLILMRALSSPPFKNYQIWWSL-------ADSKYAGTALLVKKC 144 (225)
Q Consensus 107 ~~~~~~~~l~~~~~~gy~~~~~~-------~~~g~~GvAIlsr~~ 144 (225)
..+ ...||...|.. ..++-.|+||+.|.+
T Consensus 81 ------p~l---~~~gY~g~~~~k~~~~~~~~~~~dGcaiffk~s 116 (361)
T KOG0620|consen 81 ------PEL---EASGYSGIFIEKTRMGEVELEKIDGCAIFFKPS 116 (361)
T ss_pred ------chh---hhcCCcceeecccccchhhcccCceeeeeecch
Confidence 011 12489877764 133467999998876
No 24
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=93.03 E-value=9.1 Score=38.05 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=34.3
Q ss_pred CCCCCcEEEEEeCCcchh----------------------hhhcChhHHHHHHhhcCCcEEEEeeeeCC
Q 027283 37 SKKDPLKFVTWNANSLLL----------------------RVKNNWPEFSNFITTFDPDVIALQEVRMP 83 (225)
Q Consensus 37 ~~~~~lkIitwNv~g~~~----------------------~~~~~~~~l~~~i~~~~pDIv~LQEt~~~ 83 (225)
-....|||.++||...-. ...+++.++...|...++||+.|-|....
T Consensus 459 ~v~G~LkiasfNVlNyf~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~ 527 (798)
T COG2374 459 DVGGSLKIASFNVLNYFNKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENN 527 (798)
T ss_pred ccCceeeeeeeehhhhhccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeecc
Confidence 356679999999953211 01122478888899999999999999765
No 25
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=86.16 E-value=2.9 Score=40.55 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=30.8
Q ss_pred EEEEEeC--CEEEEEEEccCCCCCCccccHHHHHHHHHHHHHHHH--h----------cCCCCEEEEeccCC
Q 027283 167 VILAEFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--Q----------CSGKPLIWCGDLNV 224 (225)
Q Consensus 167 ~l~~~~~--~~~v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~--~----------~~~~p~Il~GDFN~ 224 (225)
.|.+.+. .|++||+|+.++... ...+.|..-+..+...+. . .....+|++||||-
T Consensus 412 aIr~~l~~Ts~cFVn~HLAAg~~~---~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNY 480 (621)
T PLN03191 412 SISMSLFQSRLCFVCSHLTSGHKD---GAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNY 480 (621)
T ss_pred EEEEEEcCcEEEEEEecccccccc---chHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCccc
Confidence 3344443 699999999876532 122234333333432221 0 02357999999994
No 26
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=81.55 E-value=3.6 Score=36.60 Aligned_cols=51 Identities=20% Similarity=0.105 Sum_probs=28.1
Q ss_pred CEEEEEEEccCCCCCCc------cccHHHHHHHHHHHHHHHHhc--CCCCEEEEeccCC
Q 027283 174 TFYLLNTYAPNNGWKEE------ENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNV 224 (225)
Q Consensus 174 ~~~v~~vY~P~~~~~~~------~~~~~~r~~~~~~L~~~l~~~--~~~p~Il~GDFN~ 224 (225)
.|.++|+|+-++.+... ......|.+-+......+... ...++++.||||-
T Consensus 81 ~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNy 139 (356)
T PTZ00312 81 VVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNV 139 (356)
T ss_pred EEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEecccee
Confidence 47899999866554321 001122333333332222222 5689999999995
No 27
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=60.14 E-value=8.3 Score=37.50 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=25.8
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhcC-CcEE--EEeeee
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFD-PDVI--ALQEVR 81 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~~-pDIv--~LQEt~ 81 (225)
+-|.||||+|...... -.+.+|+...+ +||+ .|||+-
T Consensus 110 v~v~TWNV~g~~p~~~---l~l~~wl~~~~p~DiyviG~QE~v 149 (621)
T PLN03191 110 VTIGTWNVAGRLPSED---LEIEDWLSTEEPADIYIIGFQEVV 149 (621)
T ss_pred EEEEEeecCCCCCccc---CCHHHhccCCCCCCEEEEeeEEec
Confidence 4577999999755432 35788887655 4765 579985
No 28
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=47.46 E-value=29 Score=32.55 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=29.9
Q ss_pred CEEEEEEEccCCCCCCccccHHHHHHHHHHHHHHHHhc------CCCCEEEEeccCC
Q 027283 174 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC------SGKPLIWCGDLNV 224 (225)
Q Consensus 174 ~~~v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~~------~~~p~Il~GDFN~ 224 (225)
++.+++.|+-.+-. +.++|..-++.+..-+.-. ....++++||||-
T Consensus 166 ~~cFv~shlaag~~-----N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNy 217 (460)
T COG5411 166 SFCFVNSHLAAGVN-----NIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNY 217 (460)
T ss_pred CcEEEecchhcccc-----cHHHHHHHHHHHHHheecCCCceecccceEEEecccCc
Confidence 68889998866654 4445555555555444311 3456999999994
No 29
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=35.87 E-value=47 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEec
Q 027283 196 RRRKWDKRIQEFVLQCSGKPLIWCGD 221 (225)
Q Consensus 196 ~r~~~~~~L~~~l~~~~~~p~Il~GD 221 (225)
+|...++.+ ++..+..++|++||
T Consensus 50 ~K~~~i~~i---~~~fP~~kfiLIGD 72 (100)
T PF09949_consen 50 HKRDNIERI---LRDFPERKFILIGD 72 (100)
T ss_pred HHHHHHHHH---HHHCCCCcEEEEee
Confidence 466555544 45557889999999
No 30
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=35.61 E-value=55 Score=29.72 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=30.0
Q ss_pred ccCccccCCCCCcEEEEEeCCcch-------hhhhcChhHHHHHH---hhcCCcEEEEeeeeCC
Q 027283 30 ETSSEENSKKDPLKFVTWNANSLL-------LRVKNNWPEFSNFI---TTFDPDVIALQEVRMP 83 (225)
Q Consensus 30 ~~~~~~~~~~~~lkIitwNv~g~~-------~~~~~~~~~l~~~i---~~~~pDIv~LQEt~~~ 83 (225)
+.++|.......|||...-+.... .....+.+.+..+| ...++|+|||+|+...
T Consensus 52 ~~~~~~~~~~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~ 115 (363)
T cd07587 52 EAAPEQTRPPRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTM 115 (363)
T ss_pred CCChhhcCCCceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccC
Confidence 445566556667887765543110 00111113344444 4568999999998764
No 31
>PLN02504 nitrilase
Probab=32.13 E-value=90 Score=28.07 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=32.0
Q ss_pred ccCCCCCCCCCCCCccccCccccCCCCCcEE--EEEeCCcchhhhhcChhHHHHHHh---hcCCcEEEEeeeeCC
Q 027283 14 AKKPALSPSKKDGETTETSSEENSKKDPLKF--VTWNANSLLLRVKNNWPEFSNFIT---TFDPDVIALQEVRMP 83 (225)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkI--itwNv~g~~~~~~~~~~~l~~~i~---~~~pDIv~LQEt~~~ 83 (225)
|.-||..|.-.-|...+. ..||| +.+++.-..... +...+.++|. ...+|+|+|+|+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~--------~~~kiAlvQ~~~~~~d~~~--nl~~~~~li~eAa~~gadLIVfPE~~lt 69 (346)
T PLN02504 5 ADMPAVEPEVDMGADASS--------STVRATVVQASTVFYDTPA--TLDKAERLIAEAAAYGSQLVVFPEAFIG 69 (346)
T ss_pred CCCccccCCccccccccC--------CceEEEEEEcCcccCCHHH--HHHHHHHHHHHHHHCCCeEEEeCccccc
Confidence 455666665554443222 24664 455543222111 1134445544 567999999998654
No 32
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=26.60 E-value=47 Score=29.24 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=19.6
Q ss_pred hcChhHHHHHHhhcCCcEEEEee
Q 027283 57 KNNWPEFSNFITTFDPDVIALQE 79 (225)
Q Consensus 57 ~~~~~~l~~~i~~~~pDIv~LQE 79 (225)
+.+++.+.+++.+++|||+.|+=
T Consensus 139 ~eqp~~i~~Ll~~~~PDIlViTG 161 (283)
T TIGR02855 139 KEMPEKVLDLIEEVRPDILVITG 161 (283)
T ss_pred hhchHHHHHHHHHhCCCEEEEeC
Confidence 34468899999999999999974
No 33
>PLN02798 nitrilase
Probab=24.87 E-value=84 Score=27.09 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCcchhhhhcChhHHHHHH---hhcCCcEEEEeee
Q 027283 40 DPLKFVTWNANSLLLRVKNNWPEFSNFI---TTFDPDVIALQEV 80 (225)
Q Consensus 40 ~~lkIitwNv~g~~~~~~~~~~~l~~~i---~~~~pDIv~LQEt 80 (225)
..|||....+.... ....+...+.+++ ...++|||+++|+
T Consensus 9 ~~~ria~~Q~~~~~-d~~~N~~~~~~~i~~A~~~gadlvvfPE~ 51 (286)
T PLN02798 9 SSVRVAVAQMTSTN-DLAANFATCSRLAKEAAAAGAKLLFLPEC 51 (286)
T ss_pred CccEEEEEEccCCC-CHHHHHHHHHHHHHHHHHCCCCEEEcCCC
Confidence 45777765554321 1111113344444 4568999999997
No 34
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=24.75 E-value=50 Score=29.20 Aligned_cols=22 Identities=9% Similarity=0.401 Sum_probs=19.1
Q ss_pred cChhHHHHHHhhcCCcEEEEee
Q 027283 58 NNWPEFSNFITTFDPDVIALQE 79 (225)
Q Consensus 58 ~~~~~l~~~i~~~~pDIv~LQE 79 (225)
.+++.+.+++.+++|||+.|+=
T Consensus 141 eqp~~i~~Ll~~~~PDIlViTG 162 (287)
T PF05582_consen 141 EQPEKIYRLLEEYRPDILVITG 162 (287)
T ss_pred HhhHHHHHHHHHcCCCEEEEeC
Confidence 3457899999999999999974
No 35
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=24.58 E-value=1e+02 Score=27.84 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEeCC--cch--hhhhcChhHHHHHHhh-----cCCcEEEEeeeeCC
Q 027283 37 SKKDPLKFVTWNAN--SLL--LRVKNNWPEFSNFITT-----FDPDVIALQEVRMP 83 (225)
Q Consensus 37 ~~~~~lkIitwNv~--g~~--~~~~~~~~~l~~~i~~-----~~pDIv~LQEt~~~ 83 (225)
++...|+|...+.+ .+. .....+...+.+++.. ..+|+|+++|....
T Consensus 8 ~~~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~ 63 (345)
T PRK13286 8 SSNDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTH 63 (345)
T ss_pred CCCCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccc
Confidence 44556776665554 221 1122222455666543 35999999998654
No 36
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=23.14 E-value=99 Score=26.01 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=12.9
Q ss_pred hhcCCcEEEEeeeeCC
Q 027283 68 TTFDPDVIALQEVRMP 83 (225)
Q Consensus 68 ~~~~pDIv~LQEt~~~ 83 (225)
.+..+|+|+++|+...
T Consensus 30 ~~~gadlivfPE~~l~ 45 (258)
T cd07578 30 ARAGARLIVTPEMATT 45 (258)
T ss_pred HhCCCCEEEccccccc
Confidence 3567999999998764
No 37
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=22.79 E-value=1e+02 Score=28.46 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=24.4
Q ss_pred EEEEEEccCCCCCCccccHHHHHHHHHHHHHHHHhc-CCCCEEEEeccCCC
Q 027283 176 YLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVR 225 (225)
Q Consensus 176 ~v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~~-~~~p~Il~GDFN~~ 225 (225)
-++.-|.-.++.+ + | ..|.+++...++. ...-+|..||||++
T Consensus 47 gfFHPYCNAGGGG-E------r-VLW~Avr~~q~k~~n~~~viYsGD~n~t 89 (465)
T KOG1387|consen 47 GFFHPYCNAGGGG-E------R-VLWKAVRITQRKFPNNVIVIYSGDFNVT 89 (465)
T ss_pred EEecccccCCCCc-c------e-ehhHHHHHHHHhCCCceEEEEeCCCCCC
Confidence 3455566555543 1 2 2344555554444 44578999999974
No 38
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=22.31 E-value=1.2e+02 Score=25.78 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=16.4
Q ss_pred hHHHHHHhh-cCCcEEEEeeeeCC
Q 027283 61 PEFSNFITT-FDPDVIALQEVRMP 83 (225)
Q Consensus 61 ~~l~~~i~~-~~pDIv~LQEt~~~ 83 (225)
+.+.+++.+ ..+|+|+|+|+...
T Consensus 23 ~~~~~~i~~a~gadLivfPE~~~~ 46 (256)
T PRK10438 23 RHFDRQLEGITGRDVIVLPEMFTT 46 (256)
T ss_pred HHHHHHHHhccCCCEEEeCCcccC
Confidence 345555554 57999999998654
No 39
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=20.23 E-value=1.6e+02 Score=26.63 Aligned_cols=53 Identities=26% Similarity=0.471 Sum_probs=36.6
Q ss_pred CCCCCEEEEEeCCEEEEEEEccCCCCCCccccHHHHHHHHHHHHHHHHhc--CCCCEEE
Q 027283 162 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIW 218 (225)
Q Consensus 162 ~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~~--~~~p~Il 218 (225)
+.+|+.+..+...+.+++||.|...... ...+..|+.-|....+.+ .+.+.++
T Consensus 10 ~~~~~~~~~~k~~~~~~~v~~~~~~~e~----~~~~~~~~~~l~~r~~~~~~~g~~~~~ 64 (335)
T KOG1294|consen 10 DSEGRCVIVDKEMFVLINVYCPRNSPEI----SKRRLRFAKVLHYRVEKLLKQGNRKVL 64 (335)
T ss_pred hccCCeeeeecccccccceeccccCCcc----hhhhhhhhhHHHHHHHHHHHhCCeeEe
Confidence 4688888888877999999999877642 122567777676666654 3455554
No 40
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=20.08 E-value=82 Score=27.73 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=16.8
Q ss_pred hHHHHHHhhcCCcEEEEeeeeC
Q 027283 61 PEFSNFITTFDPDVIALQEVRM 82 (225)
Q Consensus 61 ~~l~~~i~~~~pDIv~LQEt~~ 82 (225)
..+.+........|+||||.|-
T Consensus 103 kaiieaaa~agvniiclqeawt 124 (387)
T KOG0808|consen 103 KAIIEAAAVAGVNIICLQEAWT 124 (387)
T ss_pred HHHHHHHHhcCccEEEeehhhc
Confidence 4555556677999999999874
No 41
>PLN00202 beta-ureidopropionase
Probab=20.04 E-value=1e+02 Score=28.50 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=13.3
Q ss_pred HhhcCCcEEEEeeeeCC
Q 027283 67 ITTFDPDVIALQEVRMP 83 (225)
Q Consensus 67 i~~~~pDIv~LQEt~~~ 83 (225)
....++|+|||+|++..
T Consensus 122 Aa~~gadLVvfPE~~~~ 138 (405)
T PLN00202 122 AGAAGVNILCLQEAWTM 138 (405)
T ss_pred HHHCCCCEEEecchhcc
Confidence 34568999999998653
Done!