Query 027283
Match_columns 225
No_of_seqs 109 out of 1146
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 99.9 2.5E-25 8.6E-30 188.8 15.5 150 41-225 3-155 (265)
2 2o3h_A DNA-(apurinic or apyrim 99.9 4.5E-23 1.5E-27 176.2 20.3 154 36-224 23-180 (285)
3 2j63_A AP-endonuclease; base e 99.9 1.1E-23 3.6E-28 194.7 17.1 161 39-225 147-359 (467)
4 1hd7_A DNA-(apurinic or apyrim 99.9 2.4E-23 8.2E-28 182.1 18.1 152 38-224 58-213 (318)
5 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 5.3E-23 1.8E-27 172.5 17.6 147 42-225 2-150 (257)
6 2jc4_A Exodeoxyribonuclease II 99.9 2.1E-22 7.1E-27 168.3 19.1 148 42-225 1-150 (256)
7 2jc5_A Exodeoxyribonuclease; h 99.9 1.1E-22 3.8E-27 170.3 16.0 148 42-224 2-152 (259)
8 1vyb_A ORF2 contains A reverse 99.9 8.1E-22 2.8E-26 162.8 16.9 141 38-225 4-149 (238)
9 1ako_A Exonuclease III; AP-end 99.9 1.1E-21 3.6E-26 165.1 14.7 149 42-225 1-155 (268)
10 2ei9_A Non-LTR retrotransposon 99.9 4.7E-21 1.6E-25 162.3 14.1 125 41-225 7-131 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 99.8 7.9E-20 2.7E-24 153.3 17.0 138 38-225 16-158 (245)
12 4gew_A 5'-tyrosyl-DNA phosphod 99.8 3.8E-20 1.3E-24 165.6 14.6 154 33-225 111-275 (362)
13 4fva_A 5'-tyrosyl-DNA phosphod 99.8 1.8E-19 6E-24 149.5 14.6 150 37-224 9-168 (256)
14 4f1h_A Tyrosyl-DNA phosphodies 99.8 1.6E-18 5.5E-23 141.4 11.3 146 40-224 2-155 (250)
15 4gz1_A Tyrosyl-DNA phosphodies 99.8 1.4E-18 4.7E-23 143.9 9.6 151 37-225 5-162 (256)
16 3teb_A Endonuclease/exonucleas 99.7 1.2E-16 3.9E-21 134.0 14.1 169 40-225 2-180 (266)
17 3l1w_A Uncharacterized protein 99.7 1.8E-16 6.1E-21 133.0 11.9 147 42-224 1-169 (257)
18 1zwx_A SMCL, sphingomyelinase- 99.7 8.1E-16 2.8E-20 131.8 12.9 162 39-225 8-199 (301)
19 2ddr_A Sphingomyelin phosphodi 99.6 1.7E-15 5.9E-20 129.9 12.2 164 39-225 7-199 (306)
20 3g6s_A Putative endonuclease/e 99.6 2.6E-15 9E-20 126.6 13.1 150 40-224 2-175 (267)
21 3i41_A Beta-hemolysin; beta to 99.6 3.1E-15 1.1E-19 130.7 12.1 164 36-225 24-218 (317)
22 3mpr_A Putative endonuclease/e 99.5 3.6E-14 1.2E-18 122.4 12.0 152 39-225 4-182 (298)
23 1sr4_B CDT B, cytolethal diste 99.5 2.6E-13 8.9E-18 116.2 15.2 162 40-224 3-180 (261)
24 2f1n_A CDT B, cytolethal diste 99.5 5.3E-13 1.8E-17 113.7 14.1 160 39-225 13-189 (262)
25 3ngq_A CCR4-NOT transcription 99.4 7.8E-13 2.7E-17 119.8 11.9 44 39-82 29-86 (398)
26 2a40_B Deoxyribonuclease-1; WA 99.4 1.5E-11 5E-16 103.9 15.7 154 42-224 1-171 (260)
27 4b8c_D Glucose-repressible alc 99.0 9.3E-11 3.2E-15 113.3 1.5 44 39-82 392-449 (727)
28 1i9z_A Synaptojanin, phosphati 98.9 1.1E-08 3.9E-13 90.9 13.5 162 39-224 24-210 (347)
29 2imq_X Salivary nitrophorin; f 98.8 1.6E-09 5.5E-14 93.4 2.6 153 40-224 7-174 (282)
30 3mtc_A Type II inositol-1,4,5- 98.8 7.2E-08 2.5E-12 84.5 12.3 159 41-224 9-193 (313)
31 2xsw_A 72 kDa inositol polypho 98.7 3.4E-08 1.2E-12 88.1 9.9 150 38-224 24-207 (357)
32 4a9c_A Phosphatidylinositol-3, 98.2 3.3E-06 1.1E-10 74.0 9.0 151 40-224 8-194 (316)
33 3p8k_A Hydrolase, carbon-nitro 59.1 6.4 0.00022 32.8 3.2 52 33-84 12-66 (281)
34 3hkx_A Amidase; alpha-beta-BET 43.1 13 0.00046 30.8 2.7 48 36-83 15-65 (283)
35 1f89_A 32.5 kDa protein YLR351 28.2 28 0.00096 28.6 2.3 45 38-83 7-57 (291)
36 3ivz_A Nitrilase; alpha-beta s 26.2 40 0.0014 27.2 2.8 24 61-84 21-47 (262)
37 2e11_A Hydrolase; dimethylarse 23.1 56 0.0019 26.3 3.2 44 41-84 3-48 (266)
38 4f4h_A Glutamine dependent NAD 22.6 48 0.0016 30.6 2.9 46 38-83 3-51 (565)
39 1uf5_A N-carbamyl-D-amino acid 21.8 44 0.0015 27.5 2.3 22 62-83 26-50 (303)
40 2uxy_A Aliphatic amidase; nitr 20.6 48 0.0016 28.2 2.3 45 40-84 11-64 (341)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.93 E-value=2.5e-25 Score=188.78 Aligned_cols=150 Identities=27% Similarity=0.534 Sum_probs=116.7
Q ss_pred CcEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCC
Q 027283 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120 (225)
Q Consensus 41 ~lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 120 (225)
+|||+||||+|++...++ .+.++|++.+|||||||||+.....+. ..+. ..
T Consensus 3 ~l~i~s~Nv~g~~~~~~~---~l~~~i~~~~~DIv~LQEt~~~~~~~~------------------------~~~~--~~ 53 (265)
T 3g91_A 3 VLKIISWNVNGLRAVHRK---GFLKWFMEEKPDILCLQEIKAAPEQLP------------------------RKLR--HV 53 (265)
T ss_dssp EEEEEEEECSCHHHHHHH---THHHHHHHHCCSEEEEECCCSCGGGSC------------------------HHHH--CC
T ss_pred ccEEEEEEcCCchhhhhh---hHHHHHHhcCCCEEEEEeccccccccC------------------------hhhh--cc
Confidence 699999999999887753 589999999999999999987664321 0111 13
Q ss_pred CCceEEEEcC-CCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccccHHHHHH
Q 027283 121 KNYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 199 (225)
Q Consensus 121 ~gy~~~~~~~-~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~~~r~~ 199 (225)
.||..++... .++++||||++|.+ +..+..++. ....+.+||++.+++..+.|+|+|+|++... ..++.+|..
T Consensus 54 ~gy~~~~~~~~~~~~~Gvail~k~~--~~~~~~~~~--~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~~--~~~~~~r~~ 127 (265)
T 3g91_A 54 EGYRSFFTPAERKGYSGVAMYTKVP--PSSLREGFG--VERFDTEGRIQIADFDDFLLYNIYFPNGAMS--EERLKYKLE 127 (265)
T ss_dssp TTCEEEEECBSSTTSCCEEEEESSC--CSEEECCCS--CHHHHSBSCEEEEECSSCEEEEEECCCCTTC--HHHHHHHHH
T ss_pred cCCcEEEccCCCCCcCEEEEEEecC--hHHhccCCC--CcccCCcCCEEEEEeCCEEEEEEEecCCCCC--chhHHHHHH
Confidence 6998877654 35578999999996 344444443 1234578999999999999999999998863 367778999
Q ss_pred HHHHHHHHHHhc--CCCCEEEEeccCCC
Q 027283 200 WDKRIQEFVLQC--SGKPLIWCGDLNVR 225 (225)
Q Consensus 200 ~~~~L~~~l~~~--~~~p~Il~GDFN~~ 225 (225)
|++.|.+++.+. .+.|+|+|||||++
T Consensus 128 ~~~~l~~~~~~~~~~~~~~ii~GDfN~~ 155 (265)
T 3g91_A 128 FYDAFLEDVNRERDSGRNVIICGDFNTA 155 (265)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECccccC
Confidence 999999998875 36899999999964
No 2
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.91 E-value=4.5e-23 Score=176.17 Aligned_cols=154 Identities=34% Similarity=0.681 Sum_probs=112.6
Q ss_pred cCCCCCcEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhh
Q 027283 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (225)
Q Consensus 36 ~~~~~~lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 115 (225)
......|||+||||+|++...++ .+.++|++++|||||||||+.....+. .. +
T Consensus 23 ~~~~~~l~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------~~------------------l 75 (285)
T 2o3h_A 23 SGKPATLKIASWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLP------AE------------------L 75 (285)
T ss_dssp TSCBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCTTSCC------GG------------------G
T ss_pred CCCccceEEEEEecccChhhhhh---hHHHHHHhcCCCEEEEEEeecchhhcc------HH------------------H
Confidence 44566899999999998876543 389999999999999999987654321 01 1
Q ss_pred CCCCCCCc-eEEEEc-C-CCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccc
Q 027283 116 SSPPFKNY-QIWWSL-A-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEEN 192 (225)
Q Consensus 116 ~~~~~~gy-~~~~~~-~-~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~ 192 (225)
. ...|| +.++.. . ..|+.|+||++|++ ++.+...++ ....+.++|++.+.+..+.|+|+|+|+.... ..
T Consensus 76 ~--~~~gy~~~~~~~~~~~~g~~Gvailsr~~--~~~~~~~~~--~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~--~~ 147 (285)
T 2o3h_A 76 Q--ELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIG--DEEHDQEGRVIVAEFDSFVLVTAYVPNAGRG--LV 147 (285)
T ss_dssp G--GCGGGCEEEEECBC--CCSCCEEEEESSC--CSEEEESCS--CGGGSSBCCEEEEECSSCEEEEEECCCCCGG--GT
T ss_pred H--hccCCcEEEEecccCCcccceEEEEEccC--hHHeeeccC--CcccCCCCcEEEEEeCCEEEEEEEcCCCCCc--ch
Confidence 1 13688 666654 2 34557999999997 344444433 1234568899988888999999999987653 24
Q ss_pred cHHHHHHHHHHHHHHHHhc-CCCCEEEEeccCC
Q 027283 193 SFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNV 224 (225)
Q Consensus 193 ~~~~r~~~~~~L~~~l~~~-~~~p~Il~GDFN~ 224 (225)
++++|..|++.|.+++++. ...|+|+|||||+
T Consensus 148 ~~~~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~ 180 (285)
T 2o3h_A 148 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNV 180 (285)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCEEEEEECSC
T ss_pred hHHHHHHHHHHHHHHHHhhccCCCEEEEEECCC
Confidence 5667888989898888764 4589999999996
No 3
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.91 E-value=1.1e-23 Score=194.72 Aligned_cols=161 Identities=25% Similarity=0.406 Sum_probs=112.8
Q ss_pred CCCcEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCC
Q 027283 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (225)
Q Consensus 39 ~~~lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 118 (225)
...|||+||||+|++...++..+.+.++|++++|||||||||+.....++ . ...|.
T Consensus 147 ~~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~-------~---------------~~~la-- 202 (467)
T 2j63_A 147 SRMYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEAD-------A---------------NATLG-- 202 (467)
T ss_dssp TTEEEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHH-------H---------------HHTSS--
T ss_pred CCCeEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccc-------h---------------HHHHh--
Confidence 45699999999999877654335799999999999999999997653211 0 01131
Q ss_pred CCCCceEEEEcC--CCCcceEEEEEccCCCc--c--eEEecCCccc---------------ccCCCCCCEEEEEe-----
Q 027283 119 PFKNYQIWWSLA--DSKYAGTALLVKKCFQP--K--KVSFSLEKTA---------------LKYEPDGRVILAEF----- 172 (225)
Q Consensus 119 ~~~gy~~~~~~~--~~g~~GvAIlsr~~i~p--~--~~~~~~~~~~---------------~~~~~~gr~l~~~~----- 172 (225)
...||+++|... ..+++|||||+|+++.+ + .+..++.... ...+.++|+|.+++
T Consensus 203 ~~~GY~~~~~~~~~~~g~~GVAIlsR~pi~~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~ 282 (467)
T 2j63_A 203 VVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPD 282 (467)
T ss_dssp CCTTEEEEEECCSSSTTSCCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCC
T ss_pred hcCCceEEEecccCCCCcceEEEEEeCCccccccceeeeeccccccccccccccccccccccccCCCCcEEEEEEEeCCc
Confidence 236898777642 45678999999997521 1 1233332000 13467899999888
Q ss_pred -----CCEEEEEEEccCCCCCCccccHHHHH-HHHHHHHHHHHhc--------------------CCCCEEEEeccCCC
Q 027283 173 -----ETFYLLNTYAPNNGWKEEENSFQRRR-KWDKRIQEFVLQC--------------------SGKPLIWCGDLNVR 225 (225)
Q Consensus 173 -----~~~~v~~vY~P~~~~~~~~~~~~~r~-~~~~~L~~~l~~~--------------------~~~p~Il~GDFN~~ 225 (225)
..|+|+|+|+|+.+.. .+++.+|. .|++.|.++++++ ...|+|||||||++
T Consensus 283 ~~~~~~~~~vinvYlP~~~~~--~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~ 359 (467)
T 2j63_A 283 SASSSSRIALVNTYVANSGMG--LTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVA 359 (467)
T ss_dssp C----CCEEEEEEECCCCCTT--STTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCC
T ss_pred ccccCceEEEEEEECCCCCcc--hHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCC
Confidence 5699999999998753 24666676 3557777776643 25799999999963
No 4
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.91 E-value=2.4e-23 Score=182.07 Aligned_cols=152 Identities=34% Similarity=0.678 Sum_probs=107.7
Q ss_pred CCCCcEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCC
Q 027283 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (225)
Q Consensus 38 ~~~~lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 117 (225)
....|||+||||+|++...++ .+.++|.+++|||||||||+.....+. ..+.
T Consensus 58 ~~~~lrv~t~Nv~g~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------------------------~~l~- 109 (318)
T 1hd7_A 58 KPATLKICSWNVDGLRAWIKK---KGLDWVKEEAPDILCLQETKCSENKLP------------------------AELQ- 109 (318)
T ss_dssp CBCCEEEEEEECSSHHHHHHT---THHHHHHHHCCSEEEEECCCCCC---------------------------------
T ss_pred CCCceEEEEEecCcchhhhhh---hHHHHHHhhCCCEEEEEEccCchhhcc------------------------HHHH-
Confidence 456799999999998876543 489999999999999999987653221 0111
Q ss_pred CCCCCc-eEEEEc-C-CCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccccH
Q 027283 118 PPFKNY-QIWWSL-A-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSF 194 (225)
Q Consensus 118 ~~~~gy-~~~~~~-~-~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~ 194 (225)
...|| +.++.. . ..|+.|+||++|++ +..+.++++ ....+.++|++.+.+..++|+|+|+|+.... ..++
T Consensus 110 -~~~gy~~~~~~~~~~~~g~~Gvailsr~~--~~~~~~~~~--~~~~~~~~r~l~~~~~~~~v~~vh~p~~~~~--~~~~ 182 (318)
T 1hd7_A 110 -ELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIG--DEEHDQEGRVIVAEFDSFVLVTAYVPNAGRG--LVRL 182 (318)
T ss_dssp ----CCCEEEEECC-----CCCEEEEESSC--CSEEEESCS--CGGGSSSSCEEEEECSSCEEEEEECCCCCGG--GTTH
T ss_pred -hcCCCceEEEecCCCCCccceEEEEEcCC--ceeEEecCC--CcccCCCCcEEEEEcCCEEEEEEEcCCCCCc--cccH
Confidence 13688 666654 2 33567999999997 344444443 1234568999999999999999999987653 2456
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCEEEEeccCC
Q 027283 195 QRRRKWDKRIQEFVLQC-SGKPLIWCGDLNV 224 (225)
Q Consensus 195 ~~r~~~~~~L~~~l~~~-~~~p~Il~GDFN~ 224 (225)
++|..|++.|.+++++. ...|+|+|||||+
T Consensus 183 ~~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~ 213 (318)
T 1hd7_A 183 EYRQRWDEAFRKFLKGLASRKPLVLCGDLNV 213 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCEEEEEECSC
T ss_pred HHHHHHHHHHHHHHHhcccCCCEEEEeeCCC
Confidence 67888989888888764 2479999999996
No 5
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.90 E-value=5.3e-23 Score=172.52 Aligned_cols=147 Identities=24% Similarity=0.425 Sum_probs=107.4
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCCC
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (225)
|||+||||+|++.+. +.+.++|++++|||||||||+.....+. . ..+ ...
T Consensus 2 lrv~t~Nv~g~~~~~----~~i~~~i~~~~~Dii~lQE~~~~~~~~~-------~----------------~~~---~~~ 51 (257)
T 2voa_A 2 LKIATFNVNSIRSRL----HIVIPWLKENKPDILCMQETKVENRKFP-------E----------------ADF---HRI 51 (257)
T ss_dssp EEEEEEECSCGGGTH----HHHHHHHHHHCCSEEEEECCCCCGGGCC-------H----------------HHH---HTT
T ss_pred eEEEEEecCChHHHH----HHHHHHHhhcCCCEEEEEEeecchhhcC-------H----------------HHh---hhC
Confidence 899999999987654 5799999999999999999986543221 0 011 126
Q ss_pred CceEEEEcCCCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccccHHHHHHHH
Q 027283 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (225)
Q Consensus 122 gy~~~~~~~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~~~r~~~~ 201 (225)
||+.++.. ..++.|+||++|+++. .+...++. ...+ ++|++.++++.+.|+|+|+|+.... +..++++|.+|+
T Consensus 52 gy~~~~~~-~~~~~G~ailsr~~~~--~~~~~~~~--~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~-~~~~~~~r~~~~ 124 (257)
T 2voa_A 52 GYHVVFSG-SKGRNGVAIASLEEPE--DVSFGLDS--EPKD-EDRLIRAKIAGIDVINTYVPQGFKI-DSEKYQYKLQWL 124 (257)
T ss_dssp TCEEEEEE-ETTEEEEEEEESSCCE--EEEESCSS--SSCC-GGGEEEEEETTEEEEEEECCCCSCT-TSHHHHHHHHHH
T ss_pred CCcEEEcC-CCCccEEEEEEccChH--HheecCCC--Cccc-cCcEEEEEECCEEEEEEEeCCCCCC-CcHHHHHHHHHH
Confidence 89877653 4456799999999642 23334431 1234 7899999999999999999987642 124556677888
Q ss_pred HHHHHHHHhc--CCCCEEEEeccCCC
Q 027283 202 KRIQEFVLQC--SGKPLIWCGDLNVR 225 (225)
Q Consensus 202 ~~L~~~l~~~--~~~p~Il~GDFN~~ 225 (225)
+.|.+++++. .+.|+|+|||||+.
T Consensus 125 ~~l~~~~~~~~~~~~p~Il~GDFN~~ 150 (257)
T 2voa_A 125 ERLYHYLQKTVDFRSFAVWCGDMNVA 150 (257)
T ss_dssp HHHHHHHHHHCCTTSCEEEEEECSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeeCCCC
Confidence 9998888764 56899999999963
No 6
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.90 E-value=2.1e-22 Score=168.34 Aligned_cols=148 Identities=30% Similarity=0.529 Sum_probs=109.0
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCCC
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (225)
|||+||||+|++.+. +.+.++|++++|||||||||+.....+. . ..+ ...
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~DIv~LQE~~~~~~~~~------~-----------------~~~---~~~ 50 (256)
T 2jc4_A 1 MKITTWNVNSLNVRL----PQVQNLLADNPPDILVLQELKLDQDKFP------A-----------------AAL---QMM 50 (256)
T ss_dssp CEEEEEECSCHHHHH----HHHHHHHHSSCCSEEEEECCCSCGGGSC------H-----------------HHH---HTT
T ss_pred CEEEEEEcCCcHHHH----HHHHHHHHhcCCCEEEEEeeccchhcCC------H-----------------hHH---hhc
Confidence 799999999987665 5799999999999999999987653211 0 112 126
Q ss_pred CceEEEEcCCCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccccHHHHHHHH
Q 027283 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201 (225)
Q Consensus 122 gy~~~~~~~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~~~r~~~~ 201 (225)
||..++.. ..+..|+||++|+++. .+...++. ...+.++|++.++++.+.|+|+|+|+..... ..++..|..|+
T Consensus 51 gy~~~~~~-~~~~~G~ailsr~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-~~~~~~r~~~~ 124 (256)
T 2jc4_A 51 GWHCVWSG-QKTYNGVAIVSRSVPQ--DVHFGLPA--LPDDPQRRVIAATVSGVRVINVYCVNGEALD-SPKFKYKEQWF 124 (256)
T ss_dssp TCEEEEEC-CSSSCCEEEEESSCCE--EEEESCTT--STTCCSCCEEEEEETTEEEEEEECCCCCSTT-SHHHHHHHHHH
T ss_pred CCeEEECC-CCcceEEEEEECCChH--HheecCCC--CccCCcCcEEEEEeCCEEEEEEEecCCCCCC-cHhHHHHHHHH
Confidence 89877653 4456799999999642 23334442 1234678999999999999999999876521 23556677888
Q ss_pred HHHHHHHHhc--CCCCEEEEeccCCC
Q 027283 202 KRIQEFVLQC--SGKPLIWCGDLNVR 225 (225)
Q Consensus 202 ~~L~~~l~~~--~~~p~Il~GDFN~~ 225 (225)
+.|.+++++. ...|+|+|||||+.
T Consensus 125 ~~l~~~~~~~~~~~~~~il~GDFN~~ 150 (256)
T 2jc4_A 125 AALTEFVRDEMTRHGKLVLLGDFNIA 150 (256)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEECCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeECCCC
Confidence 8888888764 57899999999973
No 7
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.90 E-value=1.1e-22 Score=170.29 Aligned_cols=148 Identities=20% Similarity=0.397 Sum_probs=108.2
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCCC
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (225)
|||+||||+|++...++ .+.++|++++|||||||||+.....+. ..+. ...
T Consensus 2 l~v~t~Ni~~~~~~~~~---~i~~~i~~~~~DIi~LQE~~~~~~~~~------------------------~~l~--~~~ 52 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKK---GFYEYIAASGADIVCVQELKAQEADLS------------------------ADMK--NPH 52 (259)
T ss_dssp EEEEEEECSSHHHHHHT---THHHHHHHTTCSEEEEECCCCCGGGCC------------------------HHHH--SGG
T ss_pred cEEEEEeeccHHHHHHh---HHHHHHHhcCCCEEEEEEecchhhccC------------------------hhhc--ccc
Confidence 89999999998776543 499999999999999999986543221 0110 125
Q ss_pred CceEEEEc-CCCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccccHHHHHHH
Q 027283 122 NYQIWWSL-ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (225)
Q Consensus 122 gy~~~~~~-~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~~~r~~~ 200 (225)
||..++.. ...+..|+||++|+++ ..+..+++. ...+.++|++.+++..+.|+|+|+|+.... ..+..+|..|
T Consensus 53 gy~~~~~~~~~~~~~G~ailsr~~~--~~~~~~~~~--~~~~~~~r~~~~~~~~~~v~~~h~~~~~~~--~~r~~~~~~~ 126 (259)
T 2jc5_A 53 GMHGHWHCAEKRGYSGVAVYSKRKP--DNVQIGMGI--EEFDREGRFVRCDFGRLSVISLYLPSGSSA--EERQQVKYRF 126 (259)
T ss_dssp GCEEEEECCSSTTCCCEEEEESSCC--SEEEESCSC--HHHHTTCCEEEEEETTEEEEEEECCCCTTC--HHHHHHHHHH
T ss_pred CCeEEEeccCCCCcceEEEEEecCc--eeEEeCCCC--CccCCCCeEEEEEcCCEEEEEEeccCCCCC--cHHHHHHHHH
Confidence 89877664 2345679999999974 233333431 123467899999999999999999988752 2455556688
Q ss_pred HHHHHHHHHhc--CCCCEEEEeccCC
Q 027283 201 DKRIQEFVLQC--SGKPLIWCGDLNV 224 (225)
Q Consensus 201 ~~~L~~~l~~~--~~~p~Il~GDFN~ 224 (225)
++.|.+++++. .+.|+|+|||||+
T Consensus 127 ~~~l~~~~~~~~~~~~~~Il~GDFN~ 152 (259)
T 2jc5_A 127 LDAFYPMLEAMKNEGRDIVVCGDWNI 152 (259)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeCCC
Confidence 88888888764 4789999999997
No 8
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.88 E-value=8.1e-22 Score=162.76 Aligned_cols=141 Identities=25% Similarity=0.357 Sum_probs=99.9
Q ss_pred CCCCcEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCC
Q 027283 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (225)
Q Consensus 38 ~~~~lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 117 (225)
..+.|||+||||+|++...++ +.+.++|++++|||+|||||+.....+ ..+
T Consensus 4 ~~~~lri~t~Nv~g~~~~~~~--~~~~~~i~~~~~DIv~LQE~~~~~~~~-------------------------~~l-- 54 (238)
T 1vyb_A 4 SNSHITILTLNINGLNSAIKR--HRLASWIKSQDPSVCCIQETHLTCRDT-------------------------HRL-- 54 (238)
T ss_dssp CCCCEEEEEEECSCCCSHHHH--HHHHHHHHHHCCSEEEEECCCCCTTSG-------------------------GGC--
T ss_pred CCCcceEEEEecccCCchhhH--HHHHHHHHHcCCCEEEEecccCCCCCc-------------------------hhH--
Confidence 456799999999999876654 689999999999999999998654321 112
Q ss_pred CCCCCceEE-EEcCCCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEe----CCEEEEEEEccCCCCCCccc
Q 027283 118 PPFKNYQIW-WSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEEN 192 (225)
Q Consensus 118 ~~~~gy~~~-~~~~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~----~~~~v~~vY~P~~~~~~~~~ 192 (225)
...||..+ +..+..+.+|+||++|+++ +..+.. . ..+.++|++.+++ ..+.|+|+|+|+...
T Consensus 55 -~~~~y~~~~~~~~~~~~~Gvail~r~~~-~~~~~~-~-----~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~----- 121 (238)
T 1vyb_A 55 -KIKGWRKIYQANGKQKKAGVAILVSDKT-DFKPTK-I-----KRDKEGHYIMVKGSIQQEELTILNIYAPNTGA----- 121 (238)
T ss_dssp -CCTTCCEEEEECCSSSSCCEEEEECTTC-CCEEEE-E-----EECTTSSEEEEEEEETTEEEEEEEEECCSSSH-----
T ss_pred -hhCCCCeEEEccCCCCCceEEEEEeCCC-Cccccc-e-----eEcCCCcEEEEEEEeCCCcEEEEEEecCCCCc-----
Confidence 13578653 3433345679999999964 232221 1 1345788887765 269999999998753
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Q 027283 193 SFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVR 225 (225)
Q Consensus 193 ~~~~r~~~~~~L~~~l~~~~~~p~Il~GDFN~~ 225 (225)
.+|++++.+.+.+..+.|+|+|||||+.
T Consensus 122 -----~~~~~~l~~~l~~~~~~~~Il~GDFN~~ 149 (238)
T 1vyb_A 122 -----PRFIKQVLSDLQRDLDSHTLIMGDFNTP 149 (238)
T ss_dssp -----HHHHHHHHHHTTTTCCTTEEEEEECSSC
T ss_pred -----HHHHHHHHHHHHhccCCCEEEEccCCCC
Confidence 1356667666665456899999999973
No 9
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.87 E-value=1.1e-21 Score=165.09 Aligned_cols=149 Identities=23% Similarity=0.394 Sum_probs=105.1
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCCC
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPFK 121 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 121 (225)
|||+||||+|++.+. ..+.++|++++|||||||||+.....+. . ..+ ...
T Consensus 1 lrv~t~Nv~~~~~~~----~~i~~~i~~~~~Dii~LQE~~~~~~~~~------~-----------------~~l---~~~ 50 (268)
T 1ako_A 1 MKFVSFNINGLRARP----HQLEAIVEKHQPDVIGLQETKVHDDMFP------L-----------------EEV---AKL 50 (268)
T ss_dssp CEEEEEECSCGGGCH----HHHHHHHHHHCCSEEEEECCCCCGGGCC------H-----------------HHH---HHT
T ss_pred CEEEEEehhHHHHHH----HHHHHHHHHcCCCEEEEEeccCChhhCC------H-----------------hHh---ccC
Confidence 799999999986543 6799999999999999999986543211 0 011 115
Q ss_pred CceEEEEcCCCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeC----CEEEEEEEccCCCCCCccccHHHH
Q 027283 122 NYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRR 197 (225)
Q Consensus 122 gy~~~~~~~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~----~~~v~~vY~P~~~~~~~~~~~~~r 197 (225)
||..++.. ..+..|+||++|+++ ..+...++. ...+..++++.+.+. .+.|+|+|+|+........++..|
T Consensus 51 gy~~~~~~-~~~~~G~ailsr~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r 125 (268)
T 1ako_A 51 GYNVFYHG-QKGHYGVALLTKETP--IAVRRGFPG--DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAK 125 (268)
T ss_dssp TCEEEEEE-ETTEEEEEEEESSCC--SEEEESSTT--CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHH
T ss_pred CCcEEEeC-CCCcceEEEEEecCc--ceeeeCCCC--cccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHH
Confidence 88877653 445689999999973 334444431 111235677777662 699999999987643222345568
Q ss_pred HHHHHHHHHHHHhc--CCCCEEEEeccCCC
Q 027283 198 RKWDKRIQEFVLQC--SGKPLIWCGDLNVR 225 (225)
Q Consensus 198 ~~~~~~L~~~l~~~--~~~p~Il~GDFN~~ 225 (225)
..|++.|.+++++. .+.|+|+|||||+.
T Consensus 126 ~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~ 155 (268)
T 1ako_A 126 AQFYQNLQNYLETELKRDNPVLIMGDMNIS 155 (268)
T ss_dssp HHHHHHHHHHHHHHCCTTSCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhhhCCCCEEEEeECCCC
Confidence 88999999988763 56899999999973
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.86 E-value=4.7e-21 Score=162.29 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=90.8
Q ss_pred CcEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCCC
Q 027283 41 PLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF 120 (225)
Q Consensus 41 ~lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 120 (225)
.|||+||||||++.+. +.+.+++++++|||+|||||+..
T Consensus 7 ~mki~s~Nvn~~r~~~----~~l~~~l~~~~~DIl~LQEt~~~------------------------------------- 45 (240)
T 2ei9_A 7 RLRIGQINLGGAEDAT----RELPSIARDLGLDIVLVQEQYSM------------------------------------- 45 (240)
T ss_dssp EEEEEEEECTTCHHHH----HTHHHHHHHHTCSEEEEESCCTT-------------------------------------
T ss_pred cceEEEEecCccHHHH----HHHHHHHHHcCCCEEEeecceEc-------------------------------------
Confidence 4999999999999876 45999999999999999999620
Q ss_pred CCceEEEEcCCCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCCCCCccccHHHHHHH
Q 027283 121 KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 200 (225)
Q Consensus 121 ~gy~~~~~~~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~~~~~~~~~~~r~~~ 200 (225)
.||+ |.. .+++||||+++.+..|..+...+ .+..++++.+++..++|+|+|+|++... .++..|
T Consensus 46 ~gy~--~~~--~~~~gvail~~~~~~~~~~~~~~------~~~~~~~i~i~~~~i~i~svY~P~~~~~------~~~~~~ 109 (240)
T 2ei9_A 46 VGFL--AQC--GAHPKAGVYIRNRVLPCAVLHHL------SSTHITVVHIGGWDLYMVSAYFQYSDPI------DPYLHR 109 (240)
T ss_dssp SSSE--ECC--SSSCSEEEEESSTTSCEEECGGG------CCSSEEEEEETTTTEEEEEEECCTTSCS------HHHHHH
T ss_pred CCce--Eec--cCCCCEEEEEecCCcceeeeccc------CCCCEEEEEEeeccEEEEEEEcCCCCch------hHHHHH
Confidence 3676 332 24689999999853343321111 1234556666667899999999998752 346677
Q ss_pred HHHHHHHHHhcCCCCEEEEeccCCC
Q 027283 201 DKRIQEFVLQCSGKPLIWCGDLNVR 225 (225)
Q Consensus 201 ~~~L~~~l~~~~~~p~Il~GDFN~~ 225 (225)
++.|...+ .+.++|+|||||++
T Consensus 110 l~~l~~~~---~~~~~Ii~GDfN~~ 131 (240)
T 2ei9_A 110 LGNILDRL---RGARVVICADTNAH 131 (240)
T ss_dssp HHHHHHHT---TTSCEEEEEECCCC
T ss_pred HHHHHHhc---CCCcEEEEEecccc
Confidence 77765443 34799999999984
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.84 E-value=7.9e-20 Score=153.29 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=89.7
Q ss_pred CCCCcEEEEEeCCcchhhhhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCC
Q 027283 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSS 117 (225)
Q Consensus 38 ~~~~lkIitwNv~g~~~~~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 117 (225)
....|||+||||+|.+... +.+.++|++++|||||||||+...... +.
T Consensus 16 ~~~~lri~s~Nv~~~~~~~----~~l~~~i~~~~~DIv~lQE~~~~~~~~---------------------------~~- 63 (245)
T 1wdu_A 16 NGPPYRVLQANLQRKKLAT----AELAIEAATRKAAIALIQEPYVGGAKS---------------------------MK- 63 (245)
T ss_dssp --CCEEEEEEECTTCHHHH----HHHHHHHHHHTCSEEEEESCCC---------------------------------C-
T ss_pred cCcceeeeeeeccccHHHH----HHHHHHHhhcCCCEEEEEcccccCCcc---------------------------cc-
Confidence 4567999999999987654 579999999999999999998754321 10
Q ss_pred CCCCCceEEEEcC-CCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEE--Ee--CCEEEEEEEccCCCCCCccc
Q 027283 118 PPFKNYQIWWSLA-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILA--EF--ETFYLLNTYAPNNGWKEEEN 192 (225)
Q Consensus 118 ~~~~gy~~~~~~~-~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~--~~--~~~~v~~vY~P~~~~~~~~~ 192 (225)
...||.+++... ..+.+|+||++++. ++.+. .++ ..... .++.+ .. ..++|+|+|+|+...
T Consensus 64 -~~~gy~~~~~~~~~~~~~GvaIl~~~~--~~~~~-~~~----~~~~~-~~~~~~i~~~~~~~~v~~vy~p~~~~----- 129 (245)
T 1wdu_A 64 -GFRGVRVFQSTAQGDGTVKAAIAVFDH--DLDVI-QYP----QLTTN-NIVVVGIRTRAWEITLVSYYFEPDKP----- 129 (245)
T ss_dssp -CCSSCEEEECCCCTTCCCCEEEEECCS--SCEEE-ECT----TTCCS-SEEEEEEECSSCEEEEEEEECCTTSC-----
T ss_pred -CCCcceEeccccccCCCCCeEEEEECC--CcceE-Eec----ccccC-CEEEEEEEcCCCcEEEEEEEeCCCCC-----
Confidence 125887665432 23467999999653 22221 222 11122 23333 33 269999999998763
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Q 027283 193 SFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVR 225 (225)
Q Consensus 193 ~~~~r~~~~~~L~~~l~~~~~~p~Il~GDFN~~ 225 (225)
...|++.|..+++.....|+|+|||||+.
T Consensus 130 ----~~~~~~~l~~~~~~~~~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 130 ----IESYLEQIKRVERKMGPKRLIFGGDANAK 158 (245)
T ss_dssp ----SHHHHHHHHHHHHTTCSSSEEEEEECCCC
T ss_pred ----HHHHHHHHHHHHHHhCCCcEEEEeccccC
Confidence 12456667776665556799999999974
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.83 E-value=3.8e-20 Score=165.59 Aligned_cols=154 Identities=24% Similarity=0.290 Sum_probs=94.6
Q ss_pred ccccCCCCCcEEEEEeCCcchhhhh-cChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHH
Q 027283 33 SEENSKKDPLKFVTWNANSLLLRVK-NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (225)
Q Consensus 33 ~~~~~~~~~lkIitwNv~g~~~~~~-~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (225)
+.+.++...|||+||||+|+..... .+...|.++|++++||||||||+..... ..
T Consensus 111 ~~~~~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~---------~~--------------- 166 (362)
T 4gew_A 111 TAEDLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDL---------AP--------------- 166 (362)
T ss_dssp --CTTTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTC---------HH---------------
T ss_pred CCCCCCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHh---------HH---------------
Confidence 3345566789999999999853321 1116799999999999999999953321 11
Q ss_pred HHhhCCCCCCCceEEEEcCCCCcceEEEEEccCCCcceEE-ecCCcccccCCCCCC-EEEEE--eC--CEEEEEEEccCC
Q 027283 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEKTALKYEPDGR-VILAE--FE--TFYLLNTYAPNN 185 (225)
Q Consensus 112 ~~~l~~~~~~gy~~~~~~~~~g~~GvAIlsr~~i~p~~~~-~~~~~~~~~~~~~gr-~l~~~--~~--~~~v~~vY~P~~ 185 (225)
+..+ ..+|.+++. +..+.+|+||++|+++...... ...+ ....++ ++.+. ++ .+.|+|+|+++.
T Consensus 167 l~~~----~~~y~~~~~-~~~~~~G~aIlsk~~i~~~~~~~~~~~-----~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~ 236 (362)
T 4gew_A 167 IDKL----QSLYKIYYS-NKGCQYYTAILVSKMFDVEKHDVIHFQ-----NSGMYRTLQILEGSIGGLKVFLLNTHLEST 236 (362)
T ss_dssp HHGG----GGTEEEEES-STTSSSEEEEEEETTEEEEEEEEEECT-----TCSSCCEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHHh----cCCceEEeC-CCCCCceEEEEEeccCccccccccCCC-----CCcccceEEEEEEEECCEEEEEEEecCCcc
Confidence 1222 246766554 4455689999999864221111 1111 112233 33333 33 599999999876
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHh----cCCCCEEEEeccCCC
Q 027283 186 GWKEEENSFQRRRKWDKRIQEFVLQ----CSGKPLIWCGDLNVR 225 (225)
Q Consensus 186 ~~~~~~~~~~~r~~~~~~L~~~l~~----~~~~p~Il~GDFN~~ 225 (225)
... ...|..++..+.+++.. ..+.|+|+|||||..
T Consensus 237 ~~~-----~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 237 REH-----RPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLR 275 (362)
T ss_dssp GGG-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCC
T ss_pred ccc-----hhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCC
Confidence 542 23355555555554443 256899999999963
No 13
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.82 E-value=1.8e-19 Score=149.51 Aligned_cols=150 Identities=21% Similarity=0.220 Sum_probs=89.2
Q ss_pred CCCCCcEEEEEeCCcchhhh-hcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhh
Q 027283 37 SKKDPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (225)
Q Consensus 37 ~~~~~lkIitwNv~g~~~~~-~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 115 (225)
.++++|||+||||+|+.... +.+...+.++|++++||||||||+..... ..+ ..+
T Consensus 9 ~~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~---------~~l---------------~~~ 64 (256)
T 4fva_A 9 LKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDL---------API---------------DKL 64 (256)
T ss_dssp CTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTC---------HHH---------------HGG
T ss_pred CCCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChhHh---------HHH---------------HHh
Confidence 34678999999999875322 11126799999999999999999964321 111 222
Q ss_pred CCCCCCCceEEEEcCCCCcceEEEEEccCCCcceEE-ecCCcccccCCCCCCEEEEE--eC--CEEEEEEEccCCCCCCc
Q 027283 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEKTALKYEPDGRVILAE--FE--TFYLLNTYAPNNGWKEE 190 (225)
Q Consensus 116 ~~~~~~gy~~~~~~~~~g~~GvAIlsr~~i~p~~~~-~~~~~~~~~~~~~gr~l~~~--~~--~~~v~~vY~P~~~~~~~ 190 (225)
.+|..++.....+..|++|++++++...... ..++. ......++.+. +. .+.|+|+|++.....
T Consensus 65 -----~~~~~~~~~~~~~~~g~~il~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~-- 133 (256)
T 4fva_A 65 -----QSLYKIYYSNKGCQYYTAILVSKMFDVEKHDVIHFQN----SGMYRTLQILEGSIGGLKVFLLNTHLESTREH-- 133 (256)
T ss_dssp -----GGTEEEEESSTTSSSEEEEEEETTCEEEEEEEEECTT----CSSCCEEEEEEEEETTEEEEEEEEECCCSGGG--
T ss_pred -----cCCceEeecCCCCCcceEEEEeecccceecccccCCC----CcccceeEEEEEEeCCeEEEEEEecCCCCCcc--
Confidence 2333344434555679999999875322211 12221 11122233333 33 599999999876542
Q ss_pred cccHHHHHHHHHHHHHHHH----hcCCCCEEEEeccCC
Q 027283 191 ENSFQRRRKWDKRIQEFVL----QCSGKPLIWCGDLNV 224 (225)
Q Consensus 191 ~~~~~~r~~~~~~L~~~l~----~~~~~p~Il~GDFN~ 224 (225)
...+..++..+.+.+. ...+.|+|+|||||+
T Consensus 134 ---~~~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~ 168 (256)
T 4fva_A 134 ---RPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNL 168 (256)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCC
T ss_pred ---hHHHHHHHHHHHHHhhhhhhccCCCcEEEeccCCC
Confidence 1123333444433332 236789999999996
No 14
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.77 E-value=1.6e-18 Score=141.38 Aligned_cols=146 Identities=18% Similarity=0.275 Sum_probs=89.1
Q ss_pred CCcEEEEEeCCcchhhh-hcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCC
Q 027283 40 DPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (225)
Q Consensus 40 ~~lkIitwNv~g~~~~~-~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 118 (225)
.+|||+||||+|+.... +.+...+.++|++++||||||||+.... + ......
T Consensus 2 ~~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~------------~-----------~~l~~~---- 54 (250)
T 4f1h_A 2 SKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAY------------V-----------QYLKKR---- 54 (250)
T ss_dssp CCEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHH------------H-----------HHHHHH----
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH------------H-----------HHHHHh----
Confidence 57999999999875321 1111679999999999999999995311 1 000111
Q ss_pred CCCCceEEEEcCCCCcceEEEEEccCCCcceEE-ecCCcccccCCCCCC-EEEEEe--C--CEEEEEEEccCCCCCCccc
Q 027283 119 PFKNYQIWWSLADSKYAGTALLVKKCFQPKKVS-FSLEKTALKYEPDGR-VILAEF--E--TFYLLNTYAPNNGWKEEEN 192 (225)
Q Consensus 119 ~~~gy~~~~~~~~~g~~GvAIlsr~~i~p~~~~-~~~~~~~~~~~~~gr-~l~~~~--~--~~~v~~vY~P~~~~~~~~~ 192 (225)
.++..++.....+.+|.+++++..+...... +..+ ....++ ++.+.+ . .+.++++|++....
T Consensus 55 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~----- 122 (250)
T 4f1h_A 55 --AVSYLFFEGSDDGYFTGIMLRKSRVKFLESEIICFP-----TTQMMRNLLIAQVTFSGQKLYLMTSHLESCKN----- 122 (250)
T ss_dssp --CTTEEEEESCSSSSEEEEEEETTTCEEEEEEEEECT-----TCSSCCEEEEEEEEETTEEEEEEECBCCCSGG-----
T ss_pred --ccCceeecccccccCceeEEeeccccceeccccccc-----CccccceEEEEEEecCCcEEEEeccccccccc-----
Confidence 2333344434445567777777654222221 1222 122333 333333 3 58899999976653
Q ss_pred cHHHHHHHHHHHHHHHHhc-CCCCEEEEeccCC
Q 027283 193 SFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNV 224 (225)
Q Consensus 193 ~~~~r~~~~~~L~~~l~~~-~~~p~Il~GDFN~ 224 (225)
....+..++..+.+++++. ...|+|+|||||+
T Consensus 123 ~~~~r~~q~~~~~~~l~~~~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 123 QSQERTKQLRVVLQKIKEAPEDAIVIFAGDTNL 155 (250)
T ss_dssp GHHHHHHHHHHHHHHHHHSCTTEEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCC
Confidence 2234667788888888764 4569999999996
No 15
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.76 E-value=1.4e-18 Score=143.85 Aligned_cols=151 Identities=21% Similarity=0.216 Sum_probs=87.7
Q ss_pred CCCCCcEEEEEeCCcchhhh-hcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhh
Q 027283 37 SKKDPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRAL 115 (225)
Q Consensus 37 ~~~~~lkIitwNv~g~~~~~-~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 115 (225)
....+|||+||||+|+.... +.+...+.++|++++||||||||+... ++ .. +...
T Consensus 5 ~~~~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~------------~~-----------~~-l~~~ 60 (256)
T 4gz1_A 5 EDSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPP------------YC-----------AY-LKKR 60 (256)
T ss_dssp GGGGEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHH------------HH-----------HH-HHHH
T ss_pred CCCCcEEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCHH------------HH-----------HH-HHhh
Confidence 34568999999999875432 111267999999999999999998521 11 00 1111
Q ss_pred CCCCCCCceEEEEcCCCCcceEEEEEccCCCcceEEecCCcccccCCCCCC-EEEEEe--C--CEEEEEEEccCCCCCCc
Q 027283 116 SSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF--E--TFYLLNTYAPNNGWKEE 190 (225)
Q Consensus 116 ~~~~~~gy~~~~~~~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr-~l~~~~--~--~~~v~~vY~P~~~~~~~ 190 (225)
..+|.... .... ..|.+++++++..+. ....... ......++ ++.+.+ . .+.|+|+|++....
T Consensus 61 ----~~~~~~~~-~~~~-~~~~~~l~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~--- 128 (256)
T 4gz1_A 61 ----AASYTIIT-GNEE-GYFTAILLKKGRVKF-KSQEIIP--FPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTRE--- 128 (256)
T ss_dssp ----CTTEEEEE-SCSS-SSEEEEEEETTTEEE-EEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGG---
T ss_pred ----ccccceee-cccc-CCceEEEEEeccccc-eeccccc--CCcccccceEEEEEEEeCCEEEEEEeeccccccc---
Confidence 13444333 2233 345666666542111 1111110 01112223 333333 3 59999999987653
Q ss_pred cccHHHHHHHHHHHHHHHHhc-CCCCEEEEeccCCC
Q 027283 191 ENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVR 225 (225)
Q Consensus 191 ~~~~~~r~~~~~~L~~~l~~~-~~~p~Il~GDFN~~ 225 (225)
....+..++..+.+.+++. .+.|+|+|||||+.
T Consensus 129 --~~~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 129 --HSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLR 162 (256)
T ss_dssp --GHHHHHHHHHHHHHHHHHSCTTSEEEEEEECCCC
T ss_pred --chhhhhHHHHHHhhhhhhccCcceEEEeCccCCC
Confidence 2234566777777888764 56799999999963
No 16
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.71 E-value=1.2e-16 Score=134.01 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=92.8
Q ss_pred CCcEEEEEeCCcchhhh-hcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCC
Q 027283 40 DPLKFVTWNANSLLLRV-KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSP 118 (225)
Q Consensus 40 ~~lkIitwNv~g~~~~~-~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 118 (225)
+.|||+||||+++.... +.....+.++|++++||||||||+......... ...+..|. ......+.|...
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~----~~~~~~d~-----~~~~~~~~l~~~ 72 (266)
T 3teb_A 2 NAMKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKII----FDDIREEN-----YAWVLLETLQKY 72 (266)
T ss_dssp -CEEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEE----ETTEETTC-----HHHHHHHHHTTT
T ss_pred CceEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEcccccccccc----cccccccc-----HHHHHHHHHHHh
Confidence 57999999998764321 112267899999999999999999754321000 00001110 000001334311
Q ss_pred CCCCceEEEEc---C-CCCcceEEEEEccCCCcceEEecCCcccccCCCC-CCEEEEEe--C--CEEEEEEEccCCCCCC
Q 027283 119 PFKNYQIWWSL---A-DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPD-GRVILAEF--E--TFYLLNTYAPNNGWKE 189 (225)
Q Consensus 119 ~~~gy~~~~~~---~-~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~-gr~l~~~~--~--~~~v~~vY~P~~~~~~ 189 (225)
...+|..+|.. + ..+..|+||++|.++... ..+.++........+ .+++.+.+ . .+.|+|+|++......
T Consensus 73 ~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~ 151 (266)
T 3teb_A 73 TDTDYYLHWSNSHIGFGKYNEGVAVITRHKIKAE-DEFYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCET 151 (266)
T ss_dssp CCSCCEEEEEEEEECSTTEEEEEEEEESSCCSEE-EEEECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTT
T ss_pred CCCCeEEEEeccccCccccCCeEEEEECceecCc-eeEEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCCh
Confidence 11258766432 2 233569999999974211 123333111111122 33445554 2 6999999998764321
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Q 027283 190 EENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVR 225 (225)
Q Consensus 190 ~~~~~~~r~~~~~~L~~~l~~~~~~p~Il~GDFN~~ 225 (225)
. .|..+++.|.+++.. ..|+|+|||||+.
T Consensus 152 ~-----~r~~q~~~l~~~~~~--~~~~il~GDfN~~ 180 (266)
T 3teb_A 152 E-----DMGKNIQTILNRTQN--SNLKILMGDFNTD 180 (266)
T ss_dssp C-----CHHHHHHHHHTSSCS--CCEEEEEEECCCC
T ss_pred H-----HHHHHHHHHHHHHhc--CCcEEEEeECCCC
Confidence 1 245666666655543 6799999999973
No 17
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.68 E-value=1.8e-16 Score=132.96 Aligned_cols=147 Identities=19% Similarity=0.185 Sum_probs=90.0
Q ss_pred cEEEEEeCCcchhhhh-----cChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhC
Q 027283 42 LKFVTWNANSLLLRVK-----NNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (225)
Q Consensus 42 lkIitwNv~g~~~~~~-----~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 116 (225)
|||+||||++.....+ .+...+.++|+.++||||||||+..... .. +...
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~---------~~---------------l~~~- 55 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQV---------RD---------------LKAY- 55 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHH---------HH---------------HHHH-
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHH---------HH---------------HHhc-
Confidence 7999999998764321 1126799999999999999999973210 01 1111
Q ss_pred CCCCCCceEEEEcCC--CCcceEEEEEccC-CCcceE-EecCCcccccC-----CCCCCEE-EEEe------CCEEEEEE
Q 027283 117 SPPFKNYQIWWSLAD--SKYAGTALLVKKC-FQPKKV-SFSLEKTALKY-----EPDGRVI-LAEF------ETFYLLNT 180 (225)
Q Consensus 117 ~~~~~gy~~~~~~~~--~g~~GvAIlsr~~-i~p~~~-~~~~~~~~~~~-----~~~gr~l-~~~~------~~~~v~~v 180 (225)
.||.++..... .+..|+||++|+. +..+.. .+.++...... ....|.+ .+.+ ..+.|+|+
T Consensus 56 ----l~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~~ 131 (257)
T 3l1w_A 56 ----TTFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINV 131 (257)
T ss_dssp ----SSSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEE
T ss_pred ----CCCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccccccccceeEEEEEEEcCCCCEEEEEEe
Confidence 48876654332 3456999999965 212221 12222100000 1235544 2333 25999999
Q ss_pred EccCCCCCCccccHHHHHHHHHHHHHHHHh-cCCCCEEEEeccCC
Q 027283 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNV 224 (225)
Q Consensus 181 Y~P~~~~~~~~~~~~~r~~~~~~L~~~l~~-~~~~p~Il~GDFN~ 224 (225)
|++..+. ..|..++..|.+++++ ....|+|+|||||+
T Consensus 132 Hl~~~~~-------~~r~~q~~~l~~~i~~~~~~~pvil~GDfN~ 169 (257)
T 3l1w_A 132 HLDHISA-------HARLAGMTVILEELHDKIAQYPTLLMGDFNA 169 (257)
T ss_dssp ECCSSCH-------HHHHHHHHHHHHHTHHHHHHSCEEEEEECCC
T ss_pred CCCCCCH-------HHHHHHHHHHHHHHHHHcCCCCEEEEeeCCC
Confidence 9976542 2467777788887762 32239999999997
No 18
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.66 E-value=8.1e-16 Score=131.80 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=90.3
Q ss_pred CCCcEEEEEeCCcchhhh------hcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHH
Q 027283 39 KDPLKFVTWNANSLLLRV------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112 (225)
Q Consensus 39 ~~~lkIitwNv~g~~~~~------~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (225)
...|||+||||+++.... ....+.+...+...+||||||||+...... ..+ .
T Consensus 8 ~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~--------~~l--------------~ 65 (301)
T 1zwx_A 8 PGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSAS--------HRL--------------L 65 (301)
T ss_dssp CCSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHH--------HHH--------------H
T ss_pred CCceEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHH--------HHH--------------H
Confidence 347999999999863211 000134555567889999999999743210 001 1
Q ss_pred HhhCCCCCCCceEEEEc---------------CCCCcceEEEEEccCCCcceEEecCCcccccCCCCCC-EEEEEe--C-
Q 027283 113 RALSSPPFKNYQIWWSL---------------ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF--E- 173 (225)
Q Consensus 113 ~~l~~~~~~gy~~~~~~---------------~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr-~l~~~~--~- 173 (225)
..|. ...+|.+.+.. ...+..|+||+||.++... ....++..........| ++.+.+ +
T Consensus 66 ~~l~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~ailSr~pi~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~g 142 (301)
T 1zwx_A 66 NNLR--EMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEK-SQHIFQRGGGADRLSNKGFAYVKIMKNG 142 (301)
T ss_dssp HHTT--TTCCEECCCTTSCSTTCSEEEC-----CCBCCCCEEEESSCEEEE-EEEECSCCCGGGGGBCCEEEEEEEEETT
T ss_pred HHHh--hcCCccccccCCccccccccccccccccccCCCEEEEecCCcccc-eEEEecCCCCcccccCCCeEEEEEEECC
Confidence 1221 11222211110 0123579999999964211 11223210000011233 454554 2
Q ss_pred -CEEEEEEEccCCCCCCc-cccHHHHHHHHHHHHHHHHhc---CCCCEEEEeccCCC
Q 027283 174 -TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVR 225 (225)
Q Consensus 174 -~~~v~~vY~P~~~~~~~-~~~~~~r~~~~~~L~~~l~~~---~~~p~Il~GDFN~~ 225 (225)
.++|+|+|+++...... ......|..+++.|.+++++. .+.|+|+|||||+.
T Consensus 143 ~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~ 199 (301)
T 1zwx_A 143 KPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVN 199 (301)
T ss_dssp EEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCC
T ss_pred EEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCC
Confidence 59999999987643100 023456788888899988763 35799999999973
No 19
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.63 E-value=1.7e-15 Score=129.86 Aligned_cols=164 Identities=18% Similarity=0.170 Sum_probs=89.5
Q ss_pred CCCcEEEEEeCCcchhhh------hcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHH
Q 027283 39 KDPLKFVTWNANSLLLRV------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILM 112 (225)
Q Consensus 39 ~~~lkIitwNv~g~~~~~------~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (225)
...|||+||||++.+... ....+.+..++...+||||||||+...... ..+ .
T Consensus 7 ~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~--------~~l--------------~ 64 (306)
T 2ddr_A 7 NDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSAS--------DRL--------------L 64 (306)
T ss_dssp CCEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHH--------HHH--------------H
T ss_pred CCEEEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHH--------HHH--------------H
Confidence 457999999999874210 000144555677889999999999643210 001 1
Q ss_pred HhhCC-----------CCCCCceEEEEc---CCCCcceEEEEEccCCCcceEEecCCcccccCCCCCC-EEEEEe--C--
Q 027283 113 RALSS-----------PPFKNYQIWWSL---ADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGR-VILAEF--E-- 173 (225)
Q Consensus 113 ~~l~~-----------~~~~gy~~~~~~---~~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr-~l~~~~--~-- 173 (225)
..|.. ....||...+.. ...+.+|+||+||.++... ....++........+.| ++.+.+ +
T Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ailSr~pi~~~-~~~~~~~~~~~~~~~~r~~~~~~i~~~g~ 143 (306)
T 2ddr_A 65 GNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEK-IQYVFAKGCGPDNLSNKGFVYTKIKKNDR 143 (306)
T ss_dssp HHHTTTCCEECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEE-EEEECSCCC----CCCCEEEEEEEEETTE
T ss_pred HHHhhhCCceeeccCcccccccccccccccccCccCCeEEEEECCCcccc-cEEEcCCCCCcchhcCCCeEEEEEEeCCE
Confidence 11210 000133322211 1234579999999964211 11223210000012344 444444 3
Q ss_pred CEEEEEEEccCCCCCCc-cccHHHHHHHHHHHHHHHHhc---CCCCEEEEeccCCC
Q 027283 174 TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVR 225 (225)
Q Consensus 174 ~~~v~~vY~P~~~~~~~-~~~~~~r~~~~~~L~~~l~~~---~~~p~Il~GDFN~~ 225 (225)
.+.|+|+|+++...... ......|..+++.|.+++++. .+.|+|+|||||+.
T Consensus 144 ~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~ 199 (306)
T 2ddr_A 144 FVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVN 199 (306)
T ss_dssp EEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCC
T ss_pred EEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCC
Confidence 59999999987642100 013456788888898888763 35799999999974
No 20
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.63 E-value=2.6e-15 Score=126.63 Aligned_cols=150 Identities=21% Similarity=0.217 Sum_probs=90.7
Q ss_pred CCcEEEEEeCCcchhhh-----hcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHh
Q 027283 40 DPLKFVTWNANSLLLRV-----KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (225)
Q Consensus 40 ~~lkIitwNv~g~~~~~-----~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (225)
.+|||+||||++..... +.+...+.++|++.+||||||||+..... ..+ ...
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~---------~~l--------------~~~ 58 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQF---------QDL--------------RAG 58 (267)
T ss_dssp EEEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHH---------HHH--------------HHH
T ss_pred CcEEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHH---------HHH--------------HHh
Confidence 47999999999875421 12237899999999999999999973210 011 122
Q ss_pred hCCCCCCCceEEEEcCCC---CcceEEEEEccCCCcc-eE-EecCCccccc-----C-CCCCCE-EEEEe------CCEE
Q 027283 115 LSSPPFKNYQIWWSLADS---KYAGTALLVKKCFQPK-KV-SFSLEKTALK-----Y-EPDGRV-ILAEF------ETFY 176 (225)
Q Consensus 115 l~~~~~~gy~~~~~~~~~---g~~GvAIlsr~~i~p~-~~-~~~~~~~~~~-----~-~~~gr~-l~~~~------~~~~ 176 (225)
| .||.++...... +..|+||++|..--|+ .. .+.++..... + ....|. +.+.+ ..+.
T Consensus 59 l-----~~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~ 133 (267)
T 3g6s_A 59 L-----PEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFM 133 (267)
T ss_dssp C-----TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEE
T ss_pred c-----cCCcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEcCCCCEEE
Confidence 2 578765433221 2235999966441122 21 1223210000 0 023453 33333 2599
Q ss_pred EEEEEccCCCCCCccccHHHHHHHHHHHHHHHHhc-CCCCEEEEeccCC
Q 027283 177 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNV 224 (225)
Q Consensus 177 v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~~-~~~p~Il~GDFN~ 224 (225)
|+|+|++..+. ..|..+.+.|.+++++. .+.|+|+|||||+
T Consensus 134 v~~~Hl~~~~~-------~~R~~q~~~l~~~l~~~~~~~pvIl~GDfN~ 175 (267)
T 3g6s_A 134 AVNTHFDHVGE-------EARRQSALLIIRKIKEIVGERPAVVTGDFNV 175 (267)
T ss_dssp EEEEECCSSCH-------HHHHHHHHHHHHHHHHHTTTSCEEEEEECSS
T ss_pred EEEeCCCCCCH-------HHHHHHHHHHHHHHHHhcCCCCEEEEeECCC
Confidence 99999976542 34667777888888764 3689999999997
No 21
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.61 E-value=3.1e-15 Score=130.70 Aligned_cols=164 Identities=17% Similarity=0.159 Sum_probs=91.0
Q ss_pred cCCCCCcEEEEEeCCcchhh------hhcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHH
Q 027283 36 NSKKDPLKFVTWNANSLLLR------VKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKL 109 (225)
Q Consensus 36 ~~~~~~lkIitwNv~g~~~~------~~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 109 (225)
......|||+||||+++... ...+...+...+...+||||||||+...... ..+
T Consensus 24 ~~~~~~lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~--------~~l------------ 83 (317)
T 3i41_A 24 KKDDTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGAS--------DKL------------ 83 (317)
T ss_dssp ----CCCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHH--------HHH------------
T ss_pred CCCCCceEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHH--------HHH------------
Confidence 34567899999999986321 1110144566666789999999999643210 011
Q ss_pred HHHHhhCCCCCCCceEEEEcCC-C--------------CcceEEEEEccCCCcceEEecCCcccccCC-CCCC-EEEEEe
Q 027283 110 ILMRALSSPPFKNYQIWWSLAD-S--------------KYAGTALLVKKCFQPKKVSFSLEKTALKYE-PDGR-VILAEF 172 (225)
Q Consensus 110 ~~~~~l~~~~~~gy~~~~~~~~-~--------------g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~-~~gr-~l~~~~ 172 (225)
++.|. ...+|.+.+.... . ...|++|+||.|+.... ...++.. ...+ ...| ++.+.+
T Consensus 84 --~~~L~--~~~py~~~~~g~~~~~~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~~-~~~~~~~-~~~d~~~~r~~~~~~i 157 (317)
T 3i41_A 84 --LSNVK--KEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKI-QHVFKSG-CGFDNDSNKGFVYTKI 157 (317)
T ss_dssp --HHHTT--TTCCEECCCTTSCSTTCSEEEESCCSSCSBCCCCEEEESSCEEEEE-EEECSCC-CSSGGGBCCEEEEEEE
T ss_pred --HHHHH--HhCCcccccCCccccCccCcccccccccccCCccEEEeCCCCccce-eEECCCC-CCcccccCcceEEEEE
Confidence 12332 1123332111110 0 01599999999742211 1223210 0011 1233 333433
Q ss_pred --C--CEEEEEEEccCCCCCCc-cccHHHHHHHHHHHHHHHHhc---CCCCEEEEeccCCC
Q 027283 173 --E--TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVR 225 (225)
Q Consensus 173 --~--~~~v~~vY~P~~~~~~~-~~~~~~r~~~~~~L~~~l~~~---~~~p~Il~GDFN~~ 225 (225)
. .+.|+|+|++....... ......|..+++.|.++++.. .+.|+|+|||||+.
T Consensus 158 ~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~ 218 (317)
T 3i41_A 158 EKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVN 218 (317)
T ss_dssp EETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCC
T ss_pred EECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCC
Confidence 3 59999999987543100 123456888899999999873 46799999999973
No 22
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=3.6e-14 Score=122.37 Aligned_cols=152 Identities=21% Similarity=0.207 Sum_probs=89.3
Q ss_pred CCCcEEEEEeCCcchhhh-------hcChhHHHHHHhhcCCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHH
Q 027283 39 KDPLKFVTWNANSLLLRV-------KNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (225)
Q Consensus 39 ~~~lkIitwNv~g~~~~~-------~~~~~~l~~~i~~~~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (225)
..+|||+||||+...... +.+...+.++|.+.+||||||||+... ++ ++ +
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~------------~~-~~----------l 60 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLH------------QL-KD----------M 60 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHH------------HH-HH----------H
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHH------------HH-HH----------H
Confidence 457999999998654321 111268999999999999999999631 11 00 1
Q ss_pred HHhhCCCCCCCceEEEEcCCC---CcceEEEEEccCCCcc-eE-EecCCcccccCC-----CCCCEE-EEEe------CC
Q 027283 112 MRALSSPPFKNYQIWWSLADS---KYAGTALLVKKCFQPK-KV-SFSLEKTALKYE-----PDGRVI-LAEF------ET 174 (225)
Q Consensus 112 ~~~l~~~~~~gy~~~~~~~~~---g~~GvAIlsr~~i~p~-~~-~~~~~~~~~~~~-----~~gr~l-~~~~------~~ 174 (225)
...| .+|.++...... ...|+||++|..--|+ .. .+.++....... ...|.+ .+.+ ..
T Consensus 61 ~~~l-----~~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~~ 135 (298)
T 3mpr_A 61 KEAL-----PGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFE 135 (298)
T ss_dssp HHHS-----TTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCE
T ss_pred HHhC-----CCCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEEEcCCCCE
Confidence 1222 467655432221 1235999954431122 22 122221000000 123533 3333 25
Q ss_pred EEEEEEEccCCCCCCccccHHHHHHHHHHHHHHHHhc---CCCCEEEEeccCCC
Q 027283 175 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVR 225 (225)
Q Consensus 175 ~~v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~~---~~~p~Il~GDFN~~ 225 (225)
+.|+|+|++..+. ..|..+...|.+++++. .+.|+|+|||||+.
T Consensus 136 ~~v~~~Hl~~~~~-------~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~ 182 (298)
T 3mpr_A 136 FLFFNLHMDHIGK-------KARVESAFLVQEKMKELGRGKNLPAILTGDFNVD 182 (298)
T ss_dssp EEEEEEECCSSCH-------HHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSC
T ss_pred EEEEEecCCCCCH-------HHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Confidence 9999999975432 34677778888888764 36799999999973
No 23
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.52 E-value=2.6e-13 Score=116.15 Aligned_cols=162 Identities=13% Similarity=0.152 Sum_probs=90.1
Q ss_pred CCcEEEEEeCCcchhhhhcCh-hHHHHHHhh-cCCcEEEEeeeeCCCCC-CCC-CCccc--ccccchhhhhHHHHHHHHH
Q 027283 40 DPLKFVTWNANSLLLRVKNNW-PEFSNFITT-FDPDVIALQEVRMPAAG-SKD-APKNH--QELKDDTKASREEKLILMR 113 (225)
Q Consensus 40 ~~lkIitwNv~g~~~~~~~~~-~~l~~~i~~-~~pDIv~LQEt~~~~~~-~~~-~~~~~--~~l~~~~~~~~~~~~~~~~ 113 (225)
..+||+|||++|........| ..+.++|+. .+|||++|||+..-... ... ...++ ..+.+- .|
T Consensus 3 ~~~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~------~w----- 71 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEY------TW----- 71 (261)
T ss_dssp GGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEE------EE-----
T ss_pred cccEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhh------hh-----
Confidence 368999999998532110112 368999999 78999999999753321 000 00000 000000 00
Q ss_pred hhCCCCCCCceE-EEEcC--CCCcceEEEEEccCCCcceEEecCCccccc-CCCCCCEEEEEeCCEEEEEEEccCCCCCC
Q 027283 114 ALSSPPFKNYQI-WWSLA--DSKYAGTALLVKKCFQPKKVSFSLEKTALK-YEPDGRVILAEFETFYLLNTYAPNNGWKE 189 (225)
Q Consensus 114 ~l~~~~~~gy~~-~~~~~--~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~-~~~~gr~l~~~~~~~~v~~vY~P~~~~~~ 189 (225)
.|.....+|+.+ ++... ..+..|+||+||.++ +..+.++. .. ......++.+.++++.++++|+...+..
T Consensus 72 ~lg~~~r~~~~yiy~~~~d~~~g~~g~AIlSR~~~---~~v~~l~~--~~~~~~~R~~l~i~i~g~~f~s~Hl~~~~~~- 145 (261)
T 1sr4_B 72 NLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQA---DEAFIVHS--DSSVLQSRPAVGIRIGTDVFFTVHALATGGS- 145 (261)
T ss_dssp ESSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCC---SEEEEECC--CCCSSCCCCEEEEEETTEEEEEEECCTTTTT-
T ss_pred hcccccCCCceEEEEEeecCCCCccceEEEEccch---hceEEcCC--CCCCCcCcceEEEEECCeEEEEeCCCCCCCc-
Confidence 000000123333 33322 234669999999853 22233331 11 0123346777888899999999876532
Q ss_pred ccccHHHHHHHHHHHHHHHHhc---CC---CCEEEEeccCC
Q 027283 190 EENSFQRRRKWDKRIQEFVLQC---SG---KPLIWCGDLNV 224 (225)
Q Consensus 190 ~~~~~~~r~~~~~~L~~~l~~~---~~---~p~Il~GDFN~ 224 (225)
++......|.++++.. .. .|+|++||||.
T Consensus 146 ------ea~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~ 180 (261)
T 1sr4_B 146 ------DAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNR 180 (261)
T ss_dssp ------THHHHHHHHHHHHHC---CGGGGGCEEEEEEECSS
T ss_pred ------hHHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCC
Confidence 1344566677777553 34 69999999996
No 24
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.48 E-value=5.3e-13 Score=113.65 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=95.4
Q ss_pred CCCcEEEEEeCCcchhhhhcCh-hHHHHHHhhcC-CcEEEEeeeeCCCC-----CCCC-CCc-ccccccchhhhhHHHHH
Q 027283 39 KDPLKFVTWNANSLLLRVKNNW-PEFSNFITTFD-PDVIALQEVRMPAA-----GSKD-APK-NHQELKDDTKASREEKL 109 (225)
Q Consensus 39 ~~~lkIitwNv~g~~~~~~~~~-~~l~~~i~~~~-pDIv~LQEt~~~~~-----~~~~-~~~-~~~~l~~~~~~~~~~~~ 109 (225)
...+||+|||++|........| ..+.++|...+ +|||+|||+-.-+. .... ..+ +..++.
T Consensus 13 ~~~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~----------- 81 (262)
T 2f1n_A 13 LTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELI----------- 81 (262)
T ss_dssp GGGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEE-----------
T ss_pred cceeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHH-----------
Confidence 3478999999998653211101 36888999888 99999999974421 0000 000 011110
Q ss_pred HHHHhhCCCCCCCceEEE-EcC--CCCcceEEEEEccCCCcceEEecCCcccccCCCCCCEEEEEeCCEEEEEEEccCCC
Q 027283 110 ILMRALSSPPFKNYQIWW-SLA--DSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYAPNNG 186 (225)
Q Consensus 110 ~~~~~l~~~~~~gy~~~~-~~~--~~g~~GvAIlsr~~i~p~~~~~~~~~~~~~~~~~gr~l~~~~~~~~v~~vY~P~~~ 186 (225)
..+.....+++.+++ ... ..+..|+||+||.++. + .+-++. .. .....++.+.++.+.++++|+-..+
T Consensus 82 ---w~lGt~srp~~~yiY~~~~D~~~~r~nlAIlSr~~ad--e-v~vLp~--~~-~~~Rp~lgiri~~~~ff~tHa~a~~ 152 (262)
T 2f1n_A 82 ---WNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRAD--E-VFVLSP--VR-QGGRPLLGIRIGNDAFFTAHAIAMR 152 (262)
T ss_dssp ---EECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCS--E-EEEECC--SS-TTCCCEEEEEETTEEEEEEECCSSS
T ss_pred ---HHhCCCCCCceEEEEEeeccCCCCceeeEEEEccccc--c-eEECCC--CC-CCCCceEEEEECCEEEEEEEecCCC
Confidence 001000113354433 322 2357799999999643 2 233442 11 2245577888999999999986553
Q ss_pred CCCccccHHHHHHHHHHHHHHHHhcCC-----CCEEEEeccCCC
Q 027283 187 WKEEENSFQRRRKWDKRIQEFVLQCSG-----KPLIWCGDLNVR 225 (225)
Q Consensus 187 ~~~~~~~~~~r~~~~~~L~~~l~~~~~-----~p~Il~GDFN~~ 225 (225)
.. .+..+...+.+++..... .|||++||||..
T Consensus 153 g~-------da~a~v~~I~~~~~~~~~~~~~~~pwii~GDFNr~ 189 (262)
T 2f1n_A 153 NN-------DAPALVEEVYNFFRDSRDPVHQALNWMILGDFNRE 189 (262)
T ss_dssp SC-------SHHHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSC
T ss_pred Cc-------cHHHHHHHHHHHHhcCcccccCCCcEEEEecCCCC
Confidence 32 144567788888876434 599999999974
No 25
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.43 E-value=7.8e-13 Score=119.78 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=33.1
Q ss_pred CCCcEEEEEeCCcchh--------------hhhcChhHHHHHHhhcCCcEEEEeeeeC
Q 027283 39 KDPLKFVTWNANSLLL--------------RVKNNWPEFSNFITTFDPDVIALQEVRM 82 (225)
Q Consensus 39 ~~~lkIitwNv~g~~~--------------~~~~~~~~l~~~i~~~~pDIv~LQEt~~ 82 (225)
...+||+||||..-.- .+..+...+.++|..++||||||||+..
T Consensus 29 ~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~ 86 (398)
T 3ngq_A 29 SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVET 86 (398)
T ss_dssp CEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEH
T ss_pred CCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccH
Confidence 4579999999985210 1111127899999999999999999975
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.37 E-value=1.5e-11 Score=103.92 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=78.3
Q ss_pred cEEEEEeCCcchhhhhcChhHHHHHHhhc--CCcEEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhCCCC
Q 027283 42 LKFVTWNANSLLLRVKNNWPEFSNFITTF--DPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119 (225)
Q Consensus 42 lkIitwNv~g~~~~~~~~~~~l~~~i~~~--~pDIv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 119 (225)
|||+||||+.+.....+. ..+.+.|.+. +||||||||+...... .+ .+ ..+.|....
T Consensus 1 lrv~s~NI~~~g~~~~~~-~~~~~~i~~~~~~~DIv~LQEv~~~~~~---------~~-~~----------l~~~L~~~~ 59 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMSN-ATLASYIVRIVRRYDIVLIQEVRDSHLV---------AV-GK----------LLDYLNQDD 59 (260)
T ss_dssp CEEEEEEEEEESHHHHHS-HHHHHHHHHHHTTCSEEEEEEECCTTSH---------HH-HH----------HHHHHTSSS
T ss_pred CEEEEEehhhhCCCccch-HHHHHHHHHHhccCCEEEEEEEEcCchh---------HH-HH----------HHHHHHhcc
Confidence 699999999753221111 3455555553 8999999999754210 11 01 123342111
Q ss_pred CCCceEEEEcCCC---CcceEEEEEccCC-CcceEEecCCcc-----cccCCCCCCEEEEEe-----CCEEEEEEEccCC
Q 027283 120 FKNYQIWWSLADS---KYAGTALLVKKCF-QPKKVSFSLEKT-----ALKYEPDGRVILAEF-----ETFYLLNTYAPNN 185 (225)
Q Consensus 120 ~~gy~~~~~~~~~---g~~GvAIlsr~~i-~p~~~~~~~~~~-----~~~~~~~gr~l~~~~-----~~~~v~~vY~P~~ 185 (225)
..+|.++...... +.-++|+++|.+. .+.. .+.++.. ...+....+++.... ..++|+++|++..
T Consensus 60 ~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~-~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~ 138 (260)
T 2a40_B 60 PNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLD-TYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPS 138 (260)
T ss_dssp TTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEE-EEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGG
T ss_pred CCCcEEEEcccCCCCCCcEEEEEEEcCceeEecC-ceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCCC
Confidence 2358766543211 2236999999872 2211 1222210 001122233333332 2599999999754
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHh-cCCCCEEEEeccCC
Q 027283 186 GWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNV 224 (225)
Q Consensus 186 ~~~~~~~~~~~r~~~~~~L~~~l~~-~~~~p~Il~GDFN~ 224 (225)
+. . ...+.+..+.+.+.+ ....|+|+|||||.
T Consensus 139 ~~------~-~q~~~l~~~~~~~~~~~~~~~vil~GDfN~ 171 (260)
T 2a40_B 139 DA------V-AEINSLYDVYLDVQQKWHLNDVMLMGDFNA 171 (260)
T ss_dssp GH------H-HHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_pred Cc------H-HHHHHHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 32 1 112222222222222 24679999999997
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.97 E-value=9.3e-11 Score=113.27 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=22.7
Q ss_pred CCCcEEEEEeCCcch---h-----------hhhcChhHHHHHHhhcCCcEEEEeeeeC
Q 027283 39 KDPLKFVTWNANSLL---L-----------RVKNNWPEFSNFITTFDPDVIALQEVRM 82 (225)
Q Consensus 39 ~~~lkIitwNv~g~~---~-----------~~~~~~~~l~~~i~~~~pDIv~LQEt~~ 82 (225)
...+++++||+.... . .+..+...+.+.|..++||||||||+..
T Consensus 392 ~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~ 449 (727)
T 4b8c_D 392 KRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVES 449 (727)
T ss_dssp ----------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCH
T ss_pred ccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCH
Confidence 446899999998511 0 1111126789999999999999999964
No 28
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=98.93 E-value=1.1e-08 Score=90.86 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=85.0
Q ss_pred CCCcEEEEEeCCcchhhhhcChhHHHHHHhh---cCCcE--EEEeeee-CCCCCCCCCCcccccccchhhhhHHHHHHHH
Q 027283 39 KDPLKFVTWNANSLLLRVKNNWPEFSNFITT---FDPDV--IALQEVR-MPAAGSKDAPKNHQELKDDTKASREEKLILM 112 (225)
Q Consensus 39 ~~~lkIitwNv~g~~~~~~~~~~~l~~~i~~---~~pDI--v~LQEt~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (225)
.-.+.|+||||+|... . ..|.+||.. ..||| |+|||+- .....+-. .|....+.+...+.
T Consensus 24 ~~~i~v~TwNv~g~~~--~---~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~---------~~~~~~~~w~~~i~ 89 (347)
T 1i9z_A 24 NVKIFVASYNLNGCSA--T---TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVIS---------ADPAKRREWESCVK 89 (347)
T ss_dssp EEEEEEEEEECTTCCC--C---SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----C---------CCHHHHHHHHHHHH
T ss_pred CcEEEEEeEecCCCCC--c---hhHHHHhccccCCCCCEEEEEeEEeecCchhhhcc---------cCchhHHHHHHHHH
Confidence 3468899999998764 1 348889884 68999 8999984 33321100 00000001111122
Q ss_pred HhhCCC--CCCCceEEEEcCCCCcceEEEEEccCCCcc--eEE-----ecCCcccccCCCCCCEEE--EEeC--CEEEEE
Q 027283 113 RALSSP--PFKNYQIWWSLADSKYAGTALLVKKCFQPK--KVS-----FSLEKTALKYEPDGRVIL--AEFE--TFYLLN 179 (225)
Q Consensus 113 ~~l~~~--~~~gy~~~~~~~~~g~~GvAIlsr~~i~p~--~~~-----~~~~~~~~~~~~~gr~l~--~~~~--~~~v~~ 179 (225)
..|... ...+|..+... .-+.-+++|++|.++.+. .+. .++.+ .....| .+. +.+. .++++|
T Consensus 90 ~~L~~~~~~~~~Y~~v~s~-~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g---~~gnKG-av~vr~~~~~~~l~fvn 164 (347)
T 1i9z_A 90 RLLNGKCTSGPGYVQLRSG-QLVGTALMIFCKESCLPSIKNVEGTVKKTGLGG---VSGNKG-AVAIRFDYEDTGLCFIT 164 (347)
T ss_dssp HHHHHTCCSSCCEEEEEEE-EETTEEEEEEEEGGGGGGEEEEEEEEEECCCC-------CCE-EEEEEEEETTEEEEEEE
T ss_pred HHHhhcccCCCceeEEEEe-eccceEEEEEEehHhhhhccceeeeeEeccCCC---ccCCCc-eEEEEEEECCeEEEEEE
Confidence 333100 11356554432 122347888899986432 121 22221 011112 333 3443 599999
Q ss_pred EEccCCCCCCccccHHHHHHHHHHHHHHHHh------cCCCCEEEEeccCC
Q 027283 180 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------CSGKPLIWCGDLNV 224 (225)
Q Consensus 180 vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~------~~~~p~Il~GDFN~ 224 (225)
+|+..+.. ..+.|...++.+.+.+.- ....++|++||||.
T Consensus 165 ~HLaa~~~-----~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNy 210 (347)
T 1i9z_A 165 SHLAAGYT-----NYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNY 210 (347)
T ss_dssp EECCCCSS-----CHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCC
T ss_pred ecCCCCCc-----cHHHHHHHHHHHHHhhccCcccccccCccEEEeccccc
Confidence 99987764 233455666666554421 13468999999994
No 29
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=98.79 E-value=1.6e-09 Score=93.44 Aligned_cols=153 Identities=17% Similarity=0.221 Sum_probs=75.7
Q ss_pred CCcEEEEEeCCcchhhhhcChhHHHHHHh---hcCCcE--EEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHh
Q 027283 40 DPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDV--IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRA 114 (225)
Q Consensus 40 ~~lkIitwNv~g~~~~~~~~~~~l~~~i~---~~~pDI--v~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (225)
-.|+|+||||++.... +.+.+|+. ..+||| |+|||+....... .+...+.++ +.+.
T Consensus 7 ~~i~V~T~Nv~~~~~~-----~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~----~~~~~w~~~----------l~~~ 67 (282)
T 2imq_X 7 LSVHTVSWNSGHERAP-----TNLEELLGLNSGETPDVIAVAVQGFGFQTDKP----QQGPACVKN----------FQSL 67 (282)
T ss_dssp EEEEEEEEEEETCCCC-----SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTT----CCHHHHHHH----------HHHH
T ss_pred cEEEEEEEeCCCCcCc-----hhHHHHhcccccCCCCEEEEEeeeeccccccc----hhhHHHHHH----------HHHh
Confidence 4699999999875432 23556665 688996 5999997543210 001112111 1233
Q ss_pred hCCCCCCCceEEEEcCCCCcceEEE--EEccCCCcc-e-EE-ecCCcccccCCCCCCEEEEE--eC--CEEEEEEEccCC
Q 027283 115 LSSPPFKNYQIWWSLADSKYAGTAL--LVKKCFQPK-K-VS-FSLEKTALKYEPDGRVILAE--FE--TFYLLNTYAPNN 185 (225)
Q Consensus 115 l~~~~~~gy~~~~~~~~~g~~GvAI--lsr~~i~p~-~-~~-~~~~~~~~~~~~~gr~l~~~--~~--~~~v~~vY~P~~ 185 (225)
|. ..+|..+... ..+..|.++ ++|.++.+. . .. .++.+ .....| .+.+. +. .++++|+|+...
T Consensus 68 L~---~~~Y~~v~~~-~~~~~G~~l~vf~k~~~~~~i~~~~~~~~~g---~~g~kG-av~~r~~~~~~~~~fvn~HL~~~ 139 (282)
T 2imq_X 68 LT---SKGYTKLKNT-ITETMGLTVYCLEKHLDQNTLKNETIIVTVD---DQKKSG-GIVTSFTIYNKRFSFTTSRMSDE 139 (282)
T ss_dssp HH---HTTEEEEEEE-ECSSEEEEEEEEGGGCCTTTCCCEEEEEECS---TTSCSE-EEEEEEEETTEEEEEEEEECCTT
T ss_pred cC---CCceEEEEec-cCceeEEEEEEEEccccCccceeeeeccccc---cccCCc-eEEEEEEECCEEEEEEEECCCCC
Confidence 31 1356554331 123345444 457764221 1 11 11211 111112 33333 33 599999999876
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHhc-CCCCEEEEeccCC
Q 027283 186 GWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNV 224 (225)
Q Consensus 186 ~~~~~~~~~~~r~~~~~~L~~~l~~~-~~~p~Il~GDFN~ 224 (225)
..... .|...++.|.+.+... ...++|++||||.
T Consensus 140 ~~~~~-----~R~~~~~~I~~~~~~~~~~~~vi~~GDfN~ 174 (282)
T 2imq_X 140 DVTST-----NTKYAYDTRLDYSKKDDPSDFLFWIGDLNV 174 (282)
T ss_dssp CCCTT-----SSSSSCCGGGCTTSSSSCCSEEEEEEECSC
T ss_pred CchHH-----HHHHHHHHHHHhhhccCccceEEEeccccc
Confidence 43211 1122233333333222 4568999999995
No 30
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.76 E-value=7.2e-08 Score=84.47 Aligned_cols=159 Identities=19% Similarity=0.220 Sum_probs=84.6
Q ss_pred CcEEEEEeCCcchhhhhcChhHHHHHHhh--cCCc--EEEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHHHHhhC
Q 027283 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT--FDPD--VIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALS 116 (225)
Q Consensus 41 ~lkIitwNv~g~~~~~~~~~~~l~~~i~~--~~pD--Iv~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 116 (225)
.+.|+||||+|.... +.|.+||.. ..|| +|+|||+......+ +..+......+.+.+.+.|.
T Consensus 9 ~i~v~TwNvng~~~~-----~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~---------~~~~~~~~~~W~~~i~~~L~ 74 (313)
T 3mtc_A 9 RFFAGTYNVNGQSPK-----ECLRLWLSNGIQAPDVYCVGFQELDLSKEAF---------FFHDTPKEEEWFKAVSEGLH 74 (313)
T ss_dssp EEEEEEEECTTCCCC-----SCTHHHHSSSCCCCSEEEEEEECSCCSHHHH---------TTCCCHHHHHHHHHHHHHSC
T ss_pred EEEEEEEEcCCccCc-----hhHHHHhcccCCCCCeEEEEEEecccchhhh---------cccCcchHHHHHHHHHHhcC
Confidence 467889999998642 458889885 6799 79999996543211 00000001112223335552
Q ss_pred CCCCCCceEEEEcCCCCcceEEEEEccCCCcc--e-----EEecCCcccccCCCCC-CEEEEEeC--CEEEEEEEccCCC
Q 027283 117 SPPFKNYQIWWSLADSKYAGTALLVKKCFQPK--K-----VSFSLEKTALKYEPDG-RVILAEFE--TFYLLNTYAPNNG 186 (225)
Q Consensus 117 ~~~~~gy~~~~~~~~~g~~GvAIlsr~~i~p~--~-----~~~~~~~~~~~~~~~g-r~l~~~~~--~~~v~~vY~P~~~ 186 (225)
....|..+.+..-.| --+.|++|..+.+. + +..|+.+ ...-.| -.+.+.+. .++++|+|++++.
T Consensus 75 --~~~~Y~~v~s~~lvG-l~l~Vfvr~~~~~~i~~v~~~~v~tG~~g---~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~ 148 (313)
T 3mtc_A 75 --PDAKYAKVKLIRLVG-IMLLLYVKQEHAAYISEVEAETVGTGIMG---RMGNKGGVAIRFQFHNTSICVVNSHLAAHI 148 (313)
T ss_dssp --TTSCEEEEEEEEETT-EEEEEEEEGGGGGGEEEEEEEEEECSGGG---TSTTSEEEEEEEEETTEEEEEEEEECCCSG
T ss_pred --CCCCEEEEEEechhh-hhhhhhhhhhhhhhcceeEeeeecccccc---cccCCceEEEEEEECCcEEEEEeeccCCCc
Confidence 223576654422111 23556778765332 1 1223221 111122 23344444 5899999998775
Q ss_pred CCCccccHHHHHHHHHHHHHHHHhc------------CCCCEEEEeccCC
Q 027283 187 WKEEENSFQRRRKWDKRIQEFVLQC------------SGKPLIWCGDLNV 224 (225)
Q Consensus 187 ~~~~~~~~~~r~~~~~~L~~~l~~~------------~~~p~Il~GDFN~ 224 (225)
. ..+.|..-+..+.+.+.-. ....++++||||-
T Consensus 149 ~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNy 193 (313)
T 3mtc_A 149 E-----EYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNY 193 (313)
T ss_dssp G-----GHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCC
T ss_pred h-----HHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccc
Confidence 4 3445555555555444210 1234999999995
No 31
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.74 E-value=3.4e-08 Score=88.07 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=83.2
Q ss_pred CCCCcEEEEEeCCcchhhhhcChhHHHHHHh----hcCCcE--EEEeeeeCCCCCCCCCCcccccccchhhhhHHHHHHH
Q 027283 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFIT----TFDPDV--IALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLIL 111 (225)
Q Consensus 38 ~~~~lkIitwNv~g~~~~~~~~~~~l~~~i~----~~~pDI--v~LQEt~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (225)
..-.+.|+||||+|..... ..|.+|+. ...||| |+|||+.... ..|. ..+
T Consensus 24 ~~l~i~v~TwNv~g~~~~~----~~L~~~l~~~~~~~~pDI~viGlQEi~~~~----------~~W~----------~~l 79 (357)
T 2xsw_A 24 RNVALFVATWNMQGQKELP----PSLDEFLLPAEADYAQDLYVIGVQEGCSDR----------REWE----------TRL 79 (357)
T ss_dssp CEEEEEEEEEECTTCSSCC----SCCHHHHSCTTCCSCCSEEEEEEESCCSCH----------HHHH----------HHH
T ss_pred CCceEEEEEEecCCCCCCc----ccHHHHhccccccCCCCEEEEEeeeccchH----------HHHH----------HHH
Confidence 3456889999999864322 34566664 357996 8899986321 1221 112
Q ss_pred HHhhCCCCCCCceEEEEcCCCCcceEEEEEccCCCcc----eE---EecCCcccccCCCCC-CEEEEEeC--CEEEEEEE
Q 027283 112 MRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK----KV---SFSLEKTALKYEPDG-RVILAEFE--TFYLLNTY 181 (225)
Q Consensus 112 ~~~l~~~~~~gy~~~~~~~~~g~~GvAIlsr~~i~p~----~~---~~~~~~~~~~~~~~g-r~l~~~~~--~~~v~~vY 181 (225)
.+.|. .+|..+... .-+.-+++|++|.++.+. .+ ..++.+ .....| -.+.+.+. .++++|+|
T Consensus 80 ~~~L~----~~Y~~v~s~-~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g---~~gNKGav~vr~~~~~t~~~Fvn~H 151 (357)
T 2xsw_A 80 QETLG----PHYVLLSSA-AHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVS---QIKTKGALGISFTFFGTSFLFITSH 151 (357)
T ss_dssp HHHHC----TTEEEEEEE-EETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEE---TTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHhC----Ccccchhhh-hhhhEEEEEEEchHHhhcCceeEeccccccccc---ccccccEEEEEEEECCeEEEEEEEc
Confidence 24451 466554432 223357899999875331 11 111111 000111 12333443 58999999
Q ss_pred ccCCCCCCccccHHHHHHHHHHHHHHHHh------------------cCCCCEEEEeccCC
Q 027283 182 APNNGWKEEENSFQRRRKWDKRIQEFVLQ------------------CSGKPLIWCGDLNV 224 (225)
Q Consensus 182 ~P~~~~~~~~~~~~~r~~~~~~L~~~l~~------------------~~~~p~Il~GDFN~ 224 (225)
+..+.. ..+.|...+..+.+.+.- ....++|++||||-
T Consensus 152 Laa~~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNy 207 (357)
T 2xsw_A 152 FTSGDG-----KVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNF 207 (357)
T ss_dssp CCCSTT-----CHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCC
T ss_pred cCCCCc-----hHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCc
Confidence 988764 234566666666554421 01368999999995
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.25 E-value=3.3e-06 Score=74.02 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=78.6
Q ss_pred CCcEEEEEeCCcchhhhhcChhHHHHHHhh-------------cCCcEE--EEeeeeCCCCCCCCCCcccccccchhhhh
Q 027283 40 DPLKFVTWNANSLLLRVKNNWPEFSNFITT-------------FDPDVI--ALQEVRMPAAGSKDAPKNHQELKDDTKAS 104 (225)
Q Consensus 40 ~~lkIitwNv~g~~~~~~~~~~~l~~~i~~-------------~~pDIv--~LQEt~~~~~~~~~~~~~~~~l~~~~~~~ 104 (225)
-.+.|.||||+|...+ +.|.+||.. ..|||+ .|||..... ..|.+.+
T Consensus 8 i~i~vgTwNv~g~~p~-----~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~----------~~W~~~i--- 69 (316)
T 4a9c_A 8 ISVFIGTWNMGSVPPP-----KNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGD----------REWLDLL--- 69 (316)
T ss_dssp EEEEEEEEECTTSCCC-----SCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCH----------HHHHHHH---
T ss_pred EEEEEEEeEcCCcCCC-----cchhHhhcccccccCcccccccCCCcEEEEeccccccch----------hHHHHHH---
Confidence 3577889999986432 357788752 347887 899973211 2232222
Q ss_pred HHHHHHHHHhhCCCCCCCceEEEEcCCCCcceEEEEEccCCCcc--eE-----EecCCcccccCCCCCC-EEEEEeC--C
Q 027283 105 REEKLILMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPK--KV-----SFSLEKTALKYEPDGR-VILAEFE--T 174 (225)
Q Consensus 105 ~~~~~~~~~~l~~~~~~gy~~~~~~~~~g~~GvAIlsr~~i~p~--~~-----~~~~~~~~~~~~~~gr-~l~~~~~--~ 174 (225)
.+.|.......|..+.... -+.-+++|++|..+.+. .+ ..++.+ ...-.|- .+.+.+. .
T Consensus 70 -------~~~L~~~~~~~Y~~v~s~~-L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g---~~GNKGaV~ir~~~~~ts 138 (316)
T 4a9c_A 70 -------RGGLKELTDLDYRPIAMQS-LWNIKVAVLVKPEHENRISHVSTSSVKTGIAN---TLGNKGAVGVSFMFNGTS 138 (316)
T ss_dssp -------HHHHHHHHSCCCEEEEEEE-ETTEEEEEEECGGGGGGEEEEEEEEEEEC---------CEEEEEEEEEETTEE
T ss_pred -------HHHhccccCCCEEEEEeee-ehheeeeeEEeHHHhhhCcccccceeeeeeeE---ecCCCceEEEEEEECCcE
Confidence 1222100113576554321 12346888889875332 11 123321 0111221 3344444 5
Q ss_pred EEEEEEEccCCCCCCccccHHHHHHHHHHHHHHHHh----c-------CCCCEEEEeccCC
Q 027283 175 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----C-------SGKPLIWCGDLNV 224 (225)
Q Consensus 175 ~~v~~vY~P~~~~~~~~~~~~~r~~~~~~L~~~l~~----~-------~~~p~Il~GDFN~ 224 (225)
++++|.|+.++.. ..++|-.-+..+.+.+.- . ....++++||||-
T Consensus 139 ~~FVn~HLaAg~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNy 194 (316)
T 4a9c_A 139 FGFVNCHLTSGNE-----KTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNY 194 (316)
T ss_dssp EEEEEEECCCSTT-----CHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCC
T ss_pred EEEEEeccccCch-----HHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccC
Confidence 9999999987664 344555555555443310 0 1134899999995
No 33
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=59.06 E-value=6.4 Score=32.77 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=29.3
Q ss_pred ccccCCCCCcEEEEEeCCcchhhhhcChhHHHHHHh---hcCCcEEEEeeeeCCC
Q 027283 33 SEENSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDVIALQEVRMPA 84 (225)
Q Consensus 33 ~~~~~~~~~lkIitwNv~g~~~~~~~~~~~l~~~i~---~~~pDIv~LQEt~~~~ 84 (225)
+.+.+....|||....++-.......+.+.+.+++. ..++|+|+|+|+....
T Consensus 12 ~~~~~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~g 66 (281)
T 3p8k_A 12 SGLVPRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNG 66 (281)
T ss_dssp --CCCTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTT
T ss_pred ccccccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCC
Confidence 344455566888776555321111111134555554 4589999999997653
No 34
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=43.10 E-value=13 Score=30.77 Aligned_cols=48 Identities=6% Similarity=-0.004 Sum_probs=27.2
Q ss_pred cCCCCCcEEEEEeCCcchhhhhcChhHHHHHHh---hcCCcEEEEeeeeCC
Q 027283 36 NSKKDPLKFVTWNANSLLLRVKNNWPEFSNFIT---TFDPDVIALQEVRMP 83 (225)
Q Consensus 36 ~~~~~~lkIitwNv~g~~~~~~~~~~~l~~~i~---~~~pDIv~LQEt~~~ 83 (225)
......|||....++-.......+.+.+.+++. ..++|+|+|+|+...
T Consensus 15 ~~~~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~ 65 (283)
T 3hkx_A 15 VIRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGF 65 (283)
T ss_dssp CCTTEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGG
T ss_pred eecCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccc
Confidence 344456777766554322111111134444444 468999999999765
No 35
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=28.21 E-value=28 Score=28.61 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=25.4
Q ss_pred CCCCcEEEEEeCC-cchhhhhcChhHHHHHH-----hhcCCcEEEEeeeeCC
Q 027283 38 KKDPLKFVTWNAN-SLLLRVKNNWPEFSNFI-----TTFDPDVIALQEVRMP 83 (225)
Q Consensus 38 ~~~~lkIitwNv~-g~~~~~~~~~~~l~~~i-----~~~~pDIv~LQEt~~~ 83 (225)
++..|||.....+ ..... ..+.+.+.+++ ...++|+|+++|+...
T Consensus 7 m~~~~~va~vQ~~~~~~d~-~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~ 57 (291)
T 1f89_A 7 LSQKIKVALVQLSGSSPDK-MANLQRAATFIERAMKEQPDTKLVVLPECFNS 57 (291)
T ss_dssp BSSCEEEEEEECCCCCSCH-HHHHHHHHHHHHHHHHHCTTEEEEECCTTTTS
T ss_pred ccccceEEEEeccCCcCCH-HHHHHHHHHHHHHHhhccCCCeEEEcCCCccc
Confidence 3446787766655 22111 11113344444 4457999999999763
No 36
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=26.17 E-value=40 Score=27.24 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=17.3
Q ss_pred hHHHHHH---hhcCCcEEEEeeeeCCC
Q 027283 61 PEFSNFI---TTFDPDVIALQEVRMPA 84 (225)
Q Consensus 61 ~~l~~~i---~~~~pDIv~LQEt~~~~ 84 (225)
+.+.+++ ...++|+|+|+|+....
T Consensus 21 ~~~~~~i~~A~~~gadlvvfPE~~~~g 47 (262)
T 3ivz_A 21 SKAEKLIKEASKQGAQLVVLPELFDTG 47 (262)
T ss_dssp HHHHHHHHHHHHTTCSEEECCTTTTTC
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCcccC
Confidence 3455555 45789999999987653
No 37
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=23.14 E-value=56 Score=26.33 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=24.8
Q ss_pred CcEEEEEeCCcchhhhhcChhHHHHHHhh--cCCcEEEEeeeeCCC
Q 027283 41 PLKFVTWNANSLLLRVKNNWPEFSNFITT--FDPDVIALQEVRMPA 84 (225)
Q Consensus 41 ~lkIitwNv~g~~~~~~~~~~~l~~~i~~--~~pDIv~LQEt~~~~ 84 (225)
+|||....++-.......+.+.+.+++.+ .++|+|+++|+....
T Consensus 3 ~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a~~gadlvv~PE~~~~g 48 (266)
T 2e11_A 3 DLRISLVQGSTRWHDPAGNRDYYGALLEPLAGQSDLVILPETFTSG 48 (266)
T ss_dssp CEEEEEEECCCCTTCHHHHHHHHHHHHGGGTTTCSEEECCTTTTTC
T ss_pred ccEEEEEeCCCCcCCHHHHHHHHHHHHHHhcCCCCEEECCCCcccc
Confidence 36766655542211111111455666654 579999999987653
No 38
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=22.65 E-value=48 Score=30.60 Aligned_cols=46 Identities=7% Similarity=-0.016 Sum_probs=25.1
Q ss_pred CCCCcEEEEEeCCcchhhhhcChhHHHHHH---hhcCCcEEEEeeeeCC
Q 027283 38 KKDPLKFVTWNANSLLLRVKNNWPEFSNFI---TTFDPDVIALQEVRMP 83 (225)
Q Consensus 38 ~~~~lkIitwNv~g~~~~~~~~~~~l~~~i---~~~~pDIv~LQEt~~~ 83 (225)
.++.|||..--++..-.....+.+.+.+++ ++.++|+|+|+|....
T Consensus 3 ~sMkmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~lt 51 (565)
T 4f4h_A 3 GSMKTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALS 51 (565)
T ss_dssp ---CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTT
T ss_pred CCcceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCccc
Confidence 455688876555532211111113444444 4678999999997654
No 39
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=21.80 E-value=44 Score=27.48 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=15.9
Q ss_pred HHHHHHh---hcCCcEEEEeeeeCC
Q 027283 62 EFSNFIT---TFDPDVIALQEVRMP 83 (225)
Q Consensus 62 ~l~~~i~---~~~pDIv~LQEt~~~ 83 (225)
.+.+++. ..++|+|+++|+...
T Consensus 26 ~~~~~i~~a~~~gadlvv~PE~~~~ 50 (303)
T 1uf5_A 26 RLLDMLTKAASRGANFIVFPELALT 50 (303)
T ss_dssp HHHHHHHHHHHTTCSEEECCTTTTS
T ss_pred HHHHHHHHHHhcCCCEEEecccccc
Confidence 4444443 468999999998765
No 40
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=20.58 E-value=48 Score=28.22 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=25.1
Q ss_pred CCcEEEEEeCC--cc--hhhhhcChhHHHHHHhh-----cCCcEEEEeeeeCCC
Q 027283 40 DPLKFVTWNAN--SL--LLRVKNNWPEFSNFITT-----FDPDVIALQEVRMPA 84 (225)
Q Consensus 40 ~~lkIitwNv~--g~--~~~~~~~~~~l~~~i~~-----~~pDIv~LQEt~~~~ 84 (225)
..|||....++ .. ......+.+.+.+++.+ ..+|+|+|+|+....
T Consensus 11 ~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G 64 (341)
T 2uxy_A 11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQG 64 (341)
T ss_dssp TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTB
T ss_pred CccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccc
Confidence 45777766554 11 11111111345555543 479999999987653
Done!