RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027284
(225 letters)
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 411 bits (1059), Expect = e-147
Identities = 109/224 (48%), Positives = 150/224 (66%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP + S+ERR +LR GAEV L A+G +G V ++I+ PN + QF N I
Sbjct: 102 MPESMSLERRCLLRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALI 161
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
H ETTGPEIW + VD FIAG+GTGGT+TG R LK+ + ++ +EP+ES VL+GG
Sbjct: 162 HEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGG 221
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
+PG H IQGIG G +P VLD +++DEV+ V+ ++AIET+ L +G+ G S GA A
Sbjct: 222 KPGPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYA 281
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPI 224
A+++A+RPE GK IV + PS GERYLST L+ S+R EV ++P+
Sbjct: 282 ALKIAERPEMEGKTIVTVIPSFGERYLSTTLYRSVRDEVSSLPV 325
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 409 bits (1053), Expect = e-146
Identities = 151/225 (67%), Positives = 188/225 (83%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP++ S ERRIIL A G E+ L DPA G +G + K EEIL +TPNGY+L QFENPANP+I
Sbjct: 97 MPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKI 156
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HYETTGPEIW +GGK+D F++GIGTGGT+TGAG++LKE+N N+K+YG+EP ESA+L+GG
Sbjct: 157 HYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGG 216
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
+PG H IQGIGAG IP VL+V ++DEV+ VSS+E+I+ ++ LALKEGLLVGISSGAAAAA
Sbjct: 217 KPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAA 276
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 225
AI++A+RPENAGKL V IFPS GERYLST LF++ R E E M +
Sbjct: 277 AIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFE 321
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 409 bits (1054), Expect = e-145
Identities = 157/225 (69%), Positives = 189/225 (84%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP++ S+ERR++L+A GAE+ L DPA G G V+K EEIL TP+ Y+L QF+NPANP+I
Sbjct: 205 MPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKI 264
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HYETTGPEIW+D+ GKVD F+AGIGTGGT+TG GRF+KEKNP +V G+EP+ES +L+GG
Sbjct: 265 HYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGG 324
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
+PG H IQGIGAG IP LD ++DEVI +SSEEAIET+K LALKEGL+VGISSGAAAAA
Sbjct: 325 KPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAA 384
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 225
AI+VAKRPENAGKLI V+FPS GERYLST LF+SIR EVE M +
Sbjct: 385 AIKVAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQPE 429
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 394 bits (1016), Expect = e-140
Identities = 119/216 (55%), Positives = 155/216 (71%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP T S+ERR++LRA GAE+ L A G G + K EE+ ++ QFENPANP I
Sbjct: 97 MPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAI 156
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
H TT E+W D+ GKVD +AG+GTGGT+TG + +KE+ P+ + +EP+ S VL+GG
Sbjct: 157 HRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGG 216
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
Q G H IQGIGAG +PPVLD ++DE+ITV +E+A+ ++ LA +EGLLVGISSGAA A
Sbjct: 217 QKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVA 276
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIR 216
A++VA+RPENAGKLIVV+ P GERYLST LF +
Sbjct: 277 ALQVARRPENAGKLIVVVLPDFGERYLSTPLFADVA 312
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 380 bits (978), Expect = e-135
Identities = 120/224 (53%), Positives = 153/224 (68%), Gaps = 8/224 (3%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGQFENPANPE 59
MP T S+ER+ +L LG + L + A G +G + K EEI+ P+ Y+ L QFENPANP+
Sbjct: 92 MPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQ 151
Query: 60 IHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLK-EKNPNIKVYGIEPSESAVLN 118
IH ETTGPEIW D+ GKVD +AG+GTGG++TG R +K + I +EP ES V++
Sbjct: 152 IHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVIS 211
Query: 119 GG------QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGI 172
+PG H IQGIGAG IP LD++++D V TV S+ A+ T++ L +EG+L GI
Sbjct: 212 QTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGI 271
Query: 173 SSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIR 216
SSGAA AAA R+AK PE A KLIVVI PSA ERYLSTALFE I
Sbjct: 272 SSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTALFEGIE 315
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 380 bits (979), Expect = e-134
Identities = 96/225 (42%), Positives = 142/225 (63%), Gaps = 3/225 (1%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY-ILGQFENPANPE 59
MPST S+ER++I++A GAE+ L + G G +++ +++ P Y + QF NP N
Sbjct: 108 MPSTMSVERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTA 167
Query: 60 IHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNG 119
H+ T EIW D+ G+VD ++ +GT GTV G LKEK IK+ +EP ESAVL G
Sbjct: 168 AHH-YTANEIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEG 226
Query: 120 GQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAA 179
G H IQGIGAG IP + +DE+I + +++A + ++ + +G++ G+SSGAA
Sbjct: 227 KAKGPHGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAIL 286
Query: 180 AAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPI 224
A ++ A++PEN GK IV+I PS GERYLST L++ I+ E + I
Sbjct: 287 AGLKEAEKPENEGKTIVIIVPSCGERYLSTDLYK-IKDEGTKIQI 330
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 373 bits (961), Expect = e-132
Identities = 95/213 (44%), Positives = 136/213 (63%), Gaps = 2/213 (0%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP+ S ER+ +L+A GAE+ L DP ++ + ++ QF+NPAN
Sbjct: 92 MPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKE-ELGAFMPDQFKNPANVRA 150
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HYETTGPE++ G++DAF+ G GTGGT+TG GR+LKE+ P++KV +EP+ S VL+GG
Sbjct: 151 HYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGG 210
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
+ G+H QG+G G IP LD+++LD VI V E+A ++ LA +EGL +G+SSG A
Sbjct: 211 KMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWA 270
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFE 213
A++VA R GK + I P G +YLST L+
Sbjct: 271 ALQVA-RELGPGKRVACISPDGGWKYLSTPLYA 302
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 361 bits (929), Expect = e-127
Identities = 114/213 (53%), Positives = 152/213 (71%), Gaps = 2/213 (0%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP T S+ERR +LRA GAE+ L A G G + K EE++ R ++ QF+N ANPEI
Sbjct: 95 MPDTMSLERRNLLRAYGAELVLTPGAQGMRGAIAKAEELV-REHGYFMPQQFKNEANPEI 153
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
H TTG EI G ++DAF+AG+GTGGT+TGAG+ L+E PNIK+Y +EP++S VL+GG
Sbjct: 154 HRLTTGKEIVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGG 213
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
+PG H IQGIGAG +P +LD ++ D VITV++EEA ++ A +EG+L GISSGAA A
Sbjct: 214 KPGPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHA 273
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFE 213
A++VAK GK ++ I PS GERYLST L++
Sbjct: 274 ALKVAKE-LGKGKKVLAIIPSNGERYLSTPLYQ 305
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 348 bits (896), Expect = e-122
Identities = 108/210 (51%), Positives = 143/210 (68%), Gaps = 3/210 (1%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP T S+ERR +L+ LGAE+ L +G +G V+K EI R ++L QFENP N
Sbjct: 95 MPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEIS-RETGAHMLNQFENPYNVYS 153
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVLNG 119
H TTGPEI ++DAF+AG+GTGGT++G GR LK +K+ +EP++S VL+G
Sbjct: 154 HQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSG 213
Query: 120 GQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAA 179
GQPGKH IQGIGAG +P +LD +++DEVITV EEA E ++ LA KEGLLVGISSGA A
Sbjct: 214 GQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVA 273
Query: 180 AAIRVAKRPENAGKLIVVIFPSAGERYLST 209
AA++VA++ + +V + P ERYLS
Sbjct: 274 AALKVAQKLGPDAR-VVTVAPDHAERYLSI 302
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 329 bits (845), Expect = e-114
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 10/224 (4%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP S+ERR +L GA++ + G V +E+ P+ +L Q+ NPAN +
Sbjct: 103 MPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDS 162
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HY TGPE+ D ++ F+AG+GT GT+ G GRFL+E N+K+ EP
Sbjct: 163 HYCGTGPELLADLP-EITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG------ 215
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
G + ++ + G +P + D +L +V + +A+ ++ L EG+ GIS+GA A
Sbjct: 216 -EGVYALRNMDEGFVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHA 274
Query: 181 AIRVAKRPENAGK--LIVVIFPSAGERYLSTALFESIRHEVENM 222
A+ V AG+ I ++ AG +YLST + + E
Sbjct: 275 ALGVGAGALAAGERADIALVVADAGWKYLSTGAYAGSLDDAETA 318
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 322 bits (828), Expect = e-112
Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 10/213 (4%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP S ERR +RA GAE+ L G EG E+ NR G +L QF NP NP
Sbjct: 91 MPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGE-GKLLDQFNNPDNPYA 149
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HY TTGPEIW +GG++ F++ +GT GT+TG RF++E++ + + G++P E + + G
Sbjct: 150 HYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPG- 208
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
I+ +P + + +++DEV+ + +A T + LA++EG+ G+SSG A A
Sbjct: 209 ------IRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAG 262
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFE 213
A+RVA N ++V I G+RYLST +F
Sbjct: 263 ALRVAA--ANPDAVVVAIICDRGDRYLSTGVFG 293
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 314 bits (806), Expect = e-107
Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 12/215 (5%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
+P +++ R LGA+V + A + + + ++ + QF N AN E
Sbjct: 175 LPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMK-DSKNEGFVHVNQFYNDANFEA 233
Query: 61 HYETTGPEIWND---SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL 117
H T EI+ G + +GT G ++ A +L+ +P+I+ ++P++ +
Sbjct: 234 HMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSI 293
Query: 118 NGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAA 177
G I+ + G++ + + + V+ EEA+E +A +GL++G S GAA
Sbjct: 294 PG-------IRRVETGMLWI-NMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAA 345
Query: 178 AAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALF 212
A + A + VV+ P G +YLS
Sbjct: 346 VKALAKKAAEGDLEPGDYVVVVPDTGFKYLSLVQN 380
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 313 bits (803), Expect = e-105
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 9/221 (4%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGQFENPAN 57
MP S E+ LR LGA++ + EG + +++ TPN +L Q+ N N
Sbjct: 143 MPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGN 202
Query: 58 PEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV- 116
P HY+ T EI KVD + GT GT++G GR +KE+ P+ ++ G++P S +
Sbjct: 203 PLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILA 262
Query: 117 ----LNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGI 172
LN + ++GIG P V D ++D + + S+ L +EGLL G
Sbjct: 263 RPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGG 322
Query: 173 SSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFE 213
SSG A AA+ A++ G+ VVI P Y++ + +
Sbjct: 323 SSGGAMHAALEHARK-LKKGQRCVVILPDGIRNYMTKFVSD 362
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 308 bits (790), Expect = e-104
Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 9/221 (4%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGQFENPAN 57
MP S E+ +LRALGAE+ F E V + N PN +IL Q+ N +N
Sbjct: 191 MPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASN 250
Query: 58 PEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV- 116
P HY+TT EI GK+D +A +GTGGT+TG R LKEK P ++ G++P S +
Sbjct: 251 PLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILA 310
Query: 117 ----LNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGI 172
LN + + ++GIG IP VLD ++D+ + EEA +++L +EGLL G
Sbjct: 311 EPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGG 370
Query: 173 SSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFE 213
S+G+ A A++ A+ + G+ VVI P + Y++ L +
Sbjct: 371 SAGSTVAVAVKAAQELQ-EGQRCVVILPDSVRNYMTKFLSD 410
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 63.3 bits (155), Expect = 4e-12
Identities = 43/209 (20%), Positives = 85/209 (40%), Gaps = 40/209 (19%)
Query: 14 RALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH-YE--------- 63
+A GA + +P+ E + + T I+ +H +
Sbjct: 119 QAYGASIVYCEPS--DESRENVAKRVTEET--EGIM----------VHPNQEPAVIAGQG 164
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNG 119
T E+ N VDA + +G GG + G +K P++KVY EPS +
Sbjct: 165 TIALEVLNQVPL-VDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLK 223
Query: 120 GQPGKHLIQ------GIGA--GVIP-PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLV 170
G+ +L G+ + G+ P++ ++D++ TV+ +E ++L+ + LL+
Sbjct: 224 GKLMPNLYPPETIADGVKSSIGLNTWPIIR-DLVDDIFTVTEDEIKCATQLVWERMKLLI 282
Query: 171 GISSGAAAAAAIRVAKRPENA-GKLIVVI 198
++G AA + + + K I ++
Sbjct: 283 EPTAGVGVAAVLSQHFQTVSPEVKNICIV 311
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 60.6 bits (148), Expect = 3e-11
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 44/210 (20%)
Query: 14 RALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH-YE--------- 63
+ G +V + D + K +EI R G + I Y+
Sbjct: 117 KGYGGQVIMYDRY--KDDREKMAKEISERE--GLTI----------IPPYDHPHVLAGQG 162
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNG 119
T E++ + G +DA +G GG ++G+ + PN +VYG+EP
Sbjct: 163 TAAKELFEEVGP-LDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRK 221
Query: 120 GQPGKH----------LIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLL 169
G Q +G + + +D+++TVS EE I+ K A + ++
Sbjct: 222 GSIVHIDTPKTIADGAQTQHLGNYTFSIIKE--KVDDILTVSDEELIDCLKFYAARMKIV 279
Query: 170 V-GISSGAAAAAAIRVAKRPENAGKLIVVI 198
V +G + AA R K ++ ++I
Sbjct: 280 VEP--TGCLSFAAARAMKEKLKNKRIGIII 307
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 61.0 bits (148), Expect = 3e-11
Identities = 44/217 (20%), Positives = 76/217 (35%), Gaps = 32/217 (14%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
M + ++ LR+ G V + + V++G + PN + + EN +
Sbjct: 190 MSADARAWKKAKLRSHGVTVVEYE--QDYGVAVEEGRKAAQSDPNCFFI-DDENSRTLFL 246
Query: 61 HYETTGPEI---WNDSGGKVDAF-----IAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEP 111
Y G + + G VDA G GG G LK ++ + EP
Sbjct: 247 GYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEP 306
Query: 112 SESAV----LNGGQPGKHLIQGIG--------------AGVIP-PVLDVAMLDEVITVSS 152
+ S ++ G + +Q IG A ++ +LD T+S
Sbjct: 307 THSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAME-RLLDGFYTLSD 365
Query: 153 EEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE 189
+ + LA +EG+ + S+ A A RV
Sbjct: 366 QTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVS 402
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 59.8 bits (146), Expect = 7e-11
Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 47/213 (22%)
Query: 14 RALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH-YE--------- 63
RA GAEV + + + T GY L IH ++
Sbjct: 108 RAYGAEVVDRGVT--AKNREEVARALQEET--GYAL----------IHPFDDPLVIAGQG 153
Query: 64 TTGPEIWN---DSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV---- 116
T G E+ G A +A +G GG + G +K +P V G+EP +
Sbjct: 154 TAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRS 213
Query: 117 LNGGQPGKHLIQ------GIGA---GVIP-PVLDVAMLDEVITVSSEEAIETSKLLALKE 166
L G+ + G+ G P+L +D ++TVS E +E +LL +
Sbjct: 214 LEAGRILRLEAPPRTRADGVRTLSLGERTFPILR-ERVDGILTVSEEALLEAERLLFTRT 272
Query: 167 GLLV-GISSGAAAAAAIRVAKRPENAGKLIVVI 198
+V +GA AA+ + + + ++
Sbjct: 273 KQVVEP--TGALPLAAVL--EHGARLPQTLALL 301
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 58.7 bits (143), Expect = 1e-10
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 17/149 (11%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNG 119
T G EI D VD I IG GG + G +K NP IKV G++
Sbjct: 177 TIGLEIMEDLY-DVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYT 235
Query: 120 GQP----GKHLI-QGI---GAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLV- 170
G+ + G G + + ++D+++ VS +E + L + ++
Sbjct: 236 GEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVITE 295
Query: 171 GISSGAAAAAAIRVAKRPEN-AGKLIVVI 198
G +GA A AA+ K + + V I
Sbjct: 296 G--AGALACAALLSGKLDSHIQNRKTVSI 322
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 57.2 bits (139), Expect = 6e-10
Identities = 33/160 (20%), Positives = 48/160 (30%), Gaps = 39/160 (24%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL-----N 118
T E+ +D +G GG G +K+ P IKV +E +SA L
Sbjct: 168 TLALELLQQDA-HLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDA 226
Query: 119 G-----------------GQPGKH---LIQGIGAGVIPPVLDVAMLDEVITVSSEEAIET 158
G + G L Q LD++ITV S+
Sbjct: 227 GHPVDLPRVGLFAEGVAVKRIGDETFRLCQ-------------EYLDDIITVDSDAICAA 273
Query: 159 SKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVI 198
K L + S A A + G+ + I
Sbjct: 274 MKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 313
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 57.1 bits (138), Expect = 7e-10
Identities = 36/223 (16%), Positives = 64/223 (28%), Gaps = 34/223 (15%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQ-FENPANPE 59
MP + ER + LGAE + D ++ V+ + + +G+ + Q +
Sbjct: 142 MPKGSAQERVDAILNLGAECIVTDMN--YDDTVRLTMQHAQQ--HGWEVVQDTAWEGYTK 197
Query: 60 IH------YETTGPEIW---NDSGGKVDAFIAGIGTGGTVTGAGRFLKE--KNPNIKVYG 108
I Y T E + G + G G G +L + N+
Sbjct: 198 IPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSII 257
Query: 109 IEPSESAV----LNGGQPGKHLIQ------GIG---AGVIP-PVLDVAMLDEVITVSSEE 154
+EP ++ G G+ + +L + I+
Sbjct: 258 VEPDKADCIYRSGVKGDIVNVGGDMATIMAGLACGEPNPLGWEILR-NCATQFISCQDSV 316
Query: 155 AIETSKLLALKEGLLVGIS---SGAAAAAAIRVAKRPENAGKL 194
A ++L G I SGA + L
Sbjct: 317 AALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSL 359
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 55.0 bits (133), Expect = 4e-09
Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 16/146 (10%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKE-KNPNIKVYGIEPSESAVLNGGQP 122
+ E+ K A +G GG + G + L+E ++ V +E + +
Sbjct: 183 SIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATT 242
Query: 123 GKHLIQ---------GIGAGVIPPV-LDVAM--LDEVITVSSEEAIETSKLLALKEGLLV 170
L+ +G + L + +S +EA+ + E +LV
Sbjct: 243 AGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILV 302
Query: 171 GISSGAAAAAAIR--VAKRPENAGKL 194
+ AA AA+ V ++ + G L
Sbjct: 303 E-PACGAALAAVYSHVIQKLQLEGNL 327
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 52.6 bits (127), Expect = 2e-08
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 15/148 (10%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNG 119
T G EI + A +G GG + G F K+ PN K+ G+EP +A L+
Sbjct: 197 TIGTEINRQLK-DIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHE 255
Query: 120 GQPGKHLIQGI---GAGVIPP---VLDVA--MLDEVITVSSEEAIETSKLLALKEGLLVG 171
G K G V ++D ++ V+++ K + + ++
Sbjct: 256 GHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYDEGRNILE 315
Query: 172 ISSGAAAAAAIRV-AKRPENAGKLIVVI 198
+SGA A A + + + IV I
Sbjct: 316 -TSGAVAIAGAAAYCEFYKIKNENIVAI 342
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 52.2 bits (126), Expect = 2e-08
Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 20/155 (12%)
Query: 64 TTGPEIWNDSGGKVDA-FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP 122
+ E+ A +A G G L+ ++ + +E + N
Sbjct: 143 SLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAIT 202
Query: 123 GKHLIQ---------GIGAGVIPPV-LDVA--MLDEVITVSSEEAIETSKLLALKEGLLV 170
L+ +GA + L+ V EA+ + L E +LV
Sbjct: 203 AGKLVTLPDITSVAKSLGAKTVAARALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLV 262
Query: 171 GISSGAAAAAA-------IRVAKRPENAGKLIVVI 198
+ GAA AA ++ + +VVI
Sbjct: 263 EPACGAALAAIYSGLLRRLQAEGCLPPSLTSVVVI 297
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 48.8 bits (117), Expect = 4e-07
Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 27/204 (13%)
Query: 14 RALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDS 73
GA++ D F+ ++ ++ P ++ NP E +T EI +
Sbjct: 129 VMHGAKIIQIDG--NFDDCLELARKMAADFPTISLVNSV-NPVRIE-GQKTAAFEIVDVL 184
Query: 74 GGKVDAFIAGIGTGGTVTGAGRFLKE--------KNPNIKVYGIEPSESAVLNGGQPGKH 125
G D +G G +T + E K P ++ G + + +A L G+P H
Sbjct: 185 GTAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEPVSH 242
Query: 126 ---LIQGIGAGVIPPVLDVAMLD-------EVITVSSEEAIETSKLLALKEGLLVGISSG 175
+ I G P + ++ + S EE + L+A EG+ V +S
Sbjct: 243 PETIATAIRIGS--PASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASA 300
Query: 176 AAAAAAIRVAKRPE-NAGKLIVVI 198
A+ A ++ G +V
Sbjct: 301 ASIAGLLKAIDDGWVARGSTVVCT 324
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 46.5 bits (111), Expect = 2e-06
Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 21/155 (13%)
Query: 62 YETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKE--------KNPNIKVYGIEPSE 113
+T E+ ++ G +G G +T K + P ++ G + +
Sbjct: 164 QKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLP--RMLGFQAAG 221
Query: 114 SAVLNGGQPGKH---LIQGIGAGVIPPVLD--VAMLDE----VITVSSEEAIETSKLLAL 164
+A L G+P + L I G P V +E + V+ EE + + LA
Sbjct: 222 AAPLVLGRPVERPETLATAIRIGN-PASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAR 280
Query: 165 KEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVI 198
+EG+ +S AA A ++ + +V+
Sbjct: 281 EEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLT 315
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 45.7 bits (109), Expect = 4e-06
Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 26/203 (12%)
Query: 14 RALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDS 73
GA+V F+ + +I + NP E +T EI +
Sbjct: 123 MIYGAKVLAIQG--TFDDALNIVRKIGEN--FPVEIVNSVNPYRIE-GQKTAAFEICDTL 177
Query: 74 GGKVDAFIAGIGTGGTVTGAGRFLKE--------KNPNIKVYGIEPSESAVLNGGQPGKH 125
G D +G G +T + K K P ++ G + +A + G P K+
Sbjct: 178 GEAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKN 235
Query: 126 ---LIQGIGAGVIPPVLD--VAMLDE----VITVSSEEAIETSKLLALKEGLLVGISSGA 176
+ I G P + E + VS E + KL+A EG+ +S A
Sbjct: 236 PQTIATAIKIGN-PYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAA 294
Query: 177 AAAAAIRVAKRPE-NAGKLIVVI 198
+ A I++ + G+++
Sbjct: 295 SVAGLIKLVREGFFKGGEVVTCT 317
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 4e-06
Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 53/191 (27%)
Query: 1 MPSTYSIERRI--ILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFEN--- 54
S R+ L + E+ + FV EE+L N +++ +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMV--------QKFV---EEVLR--INYKFLMSPIKTEQR 103
Query: 55 -PANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113
P+ Y ++ND F V+ +LK + + + P++
Sbjct: 104 QPSMMTRMYIEQRDRLYND----NQVF-----AKYNVSRLQPYLKLRQ---ALLELRPAK 151
Query: 114 SAVLNGGQPGKHLIQGIGAGVIPPVLDVA--------MLDEV--ITVSSEEAIETSKLLA 163
+ +++G + G G + LDV M ++ + + + + ET +L
Sbjct: 152 NVLIDG-------VLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPET--VLE 200
Query: 164 LKEGLLVGISS 174
+ + LL I
Sbjct: 201 MLQKLLYQIDP 211
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 44.5 bits (105), Expect = 1e-05
Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 13/175 (7%)
Query: 37 EEILNRTPNGYILGQ-FENPANPEIHY---ETTGPEIWNDSGGKVDAFIAGIGTGGTVTG 92
E + Y + + + + + G K D + TG T G
Sbjct: 146 ESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAG 205
Query: 93 AGRFLKEKNPNIKVYGIEPSESAVLNGGQPGK---HLIQGIGAGVIPPVLDVAMLDEVI- 148
+V G++ S Q + + +G DV + +
Sbjct: 206 MVVGFAADGRADRVIGVDASAKPAQTREQITRIARQTAEKVGLERDIMRADVVLDERFAG 265
Query: 149 ---TVSSEEAIETSKLLALKEGLLVG-ISSGAAAAAAIRVAKRPE-NAGKLIVVI 198
+ +E +E +L A EG+L + G + I + + E G ++
Sbjct: 266 PEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYA 320
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 8e-04
Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 45/143 (31%)
Query: 93 AGRFLKEKNPNIKVYGI--------EPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAML 144
A K+ YG P + GG+ GK + + A + ++D +
Sbjct: 1649 ADNHFKDT------YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 145 DEVITVSSEEAIETSKLLALK--EGLL-------VGISSGAAAAAAIRVAK----RPEN- 190
E I +E E S + +GLL ++ AA K P +
Sbjct: 1703 TEKIF---KEINEHSTSYTFRSEKGLLSATQFTQPALT--LMEKAAFEDLKSKGLIPADA 1757
Query: 191 --AGKLIVVIFPSAGERYLSTAL 211
AG S GE Y AL
Sbjct: 1758 TFAGH-------SLGE-Y--AAL 1770
Score = 35.8 bits (82), Expect = 0.011
Identities = 39/253 (15%), Positives = 69/253 (27%), Gaps = 78/253 (30%)
Query: 1 MPSTY--SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANP 58
+ ++ ++ + E+ + F + +L+ T QF PA
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS----EKGLLSAT-------QFTQPA-- 1735
Query: 59 EIHYETTGPEIWND--SGGKV--DAFIAG--IG-------TGG---------TVTGAGRF 96
+ + D S G + DA AG +G V G
Sbjct: 1736 -LT--LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT 1792
Query: 97 LKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAI 156
++ P E N G + I G + L V+ +
Sbjct: 1793 MQVAVPR--------DELGRSNYG------MIAINPGRVAASFSQEALQYVVERVGK--- 1835
Query: 157 ETSKLLAL----KEGLLVGISSGAAAA--AAIRVAKRPENAGKLIVVIFPSAGERYLSTA 210
T L+ + E +++G A V + I +I
Sbjct: 1836 RTGWLVEIVNYNVENQQY-VAAGDLRALDTVTNVLN--FIKLQKIDII-----------E 1881
Query: 211 LFESIRHE-VENM 222
L +S+ E VE
Sbjct: 1882 LQKSLSLEEVEGH 1894
Score = 33.1 bits (75), Expect = 0.075
Identities = 59/314 (18%), Positives = 89/314 (28%), Gaps = 131/314 (41%)
Query: 2 PSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENP--ANPE 59
P+T E ++ + LG Y++ V + +++LN L +FEN +
Sbjct: 54 PTT-PAE--LVGKFLG---YVSSLVE--PSKVGQFDQVLN-----LCLTEFENCYLEGND 100
Query: 60 IHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVY----------GI 109
IH A A + T L + IK Y
Sbjct: 101 IH-----------------ALAAKLLQENDTT-----LVKTKELIKNYITARIMAKRPFD 138
Query: 110 EPSESAVLN-------------GGQPG--------------------KHLIQGIGA---- 132
+ S SA+ GGQ G LI+
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQ-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 133 ---------GVIPPVLDV-AMLDEVITVSSEEA-------------------IETSKLLA 163
V L++ L+ ++ + T+KLL
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 164 LKEGLLVGISSGAA-------AAAAIRVAKRPE----NAGKLIVVIFPSAGER----YLS 208
G L GA A AI E + K I V+F G R Y +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-FIGVRCYEAYPN 316
Query: 209 TALFESIRHE-VEN 221
T+L SI + +EN
Sbjct: 317 TSLPPSILEDSLEN 330
Score = 28.5 bits (63), Expect = 2.4
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 119 GGQPG-----KHLIQGIGAGVIPP-VLDVAMLDEV 147
GG G G G VI LD+ D+
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 35.9 bits (83), Expect = 0.007
Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 29/163 (17%)
Query: 62 YETTGPEIWNDSGGKV-DAFIAGIGTGGTVTGAGRFLK--------EKNPNIKVYGIEPS 112
+T EI +V D I G G + + K ++ P ++ + +
Sbjct: 271 QKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIP--RMVCAQAA 328
Query: 113 ESA-VLNGGQPGKHLIQGIGAG-------VIP-PVLDVAMLD-------EVITVSSEEAI 156
+ + + G + + A I PV + V + EE +
Sbjct: 329 NANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELM 388
Query: 157 ETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVI 198
+ G+ + +G A A ++ + VV+
Sbjct: 389 DAMAQAD-STGMFICPHTGVALTALFKLRNQGVIAPTDRTVVV 430
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 35.2 bits (82), Expect = 0.013
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 44/157 (28%)
Query: 78 DAFIAGIGTGGTVTGA-GRFLKEKNPNIKVYGIEPS--------ESAVLNGGQPG----- 123
DA IA +G G G F+ + ++ + G+EP A L G+ G
Sbjct: 224 DAVIACVGGGSNAIGMFADFIND--TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGM 281
Query: 124 -KHLIQ----------GIGAGVIPPVLDV-------AMLDEV-----ITVSSEEAIETSK 160
++Q I AG LD A L+ + ++++ +EA+E K
Sbjct: 282 KAPMMQTADGQIEESYSISAG-----LDFPSVGPQHAYLNSIGRADYVSITDDEALEAFK 336
Query: 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 197
L EG++ + S A A A+++ + +L+VV
Sbjct: 337 TLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVV 373
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 34.5 bits (80), Expect = 0.023
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 35/157 (22%)
Query: 74 GGKVDAFIAGIGTGGTVTGA-GRFLKEKNPNIKVYGIE--------PSESAVLNGGQPG- 123
G DA IA +G G G F K+ G+E +A + G+ G
Sbjct: 243 GRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGV 302
Query: 124 -----KHLIQGIGAGVIPPVLDV-AMLD-----------------EVITVSSEEAIETSK 160
+L+ G I P V A LD E +V+ EEA+E K
Sbjct: 303 LHGSYMYLLYD-HDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALEGFK 361
Query: 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 197
LLA EG++ + S A A A +V + +++V+
Sbjct: 362 LLARLEGIIPALESAHAIAYAAKVVPE-MDKDQVVVI 397
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 34.1 bits (78), Expect = 0.023
Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 28/131 (21%)
Query: 92 GAGRFLKE-KNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPV----LDVAMLDE 146
G G FL+ K I+ G++ +E + + ++++ + + LD M+
Sbjct: 51 GRGEFLELCKEEGIESIGVDINEDMI-KFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISH 109
Query: 147 VITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERY 206
+ E ++ +L L + + IV+ P+ Y
Sbjct: 110 FV-----EHLDPERLFEL-----------------LSLCYSKMKYSSYIVIESPNPTSLY 147
Query: 207 LSTALFESIRH 217
+ H
Sbjct: 148 SLINFYIDPTH 158
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open
twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis
saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Length = 341
Score = 33.9 bits (77), Expect = 0.031
Identities = 25/143 (17%), Positives = 42/143 (29%), Gaps = 17/143 (11%)
Query: 68 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLI 127
+ G K D + TG T G + + V I + K
Sbjct: 184 NQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAI-----DASFTSEKTKEQT 238
Query: 128 QGI------GAGVIPPVLDVAMLDEVIT----VSSEEAIETSKLLALKEGLLV-GISSGA 176
I GV D + V +E IE + A +EG+L + G
Sbjct: 239 LRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGK 298
Query: 177 AAAAAIR-VAKRPENAGKLIVVI 198
+ I + + G ++ +
Sbjct: 299 SMQGLIALIKEDYFKPGANVLYV 321
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 32.9 bits (76), Expect = 0.059
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 37/153 (24%)
Query: 78 DAFIAGIGTGGTVTGA-GRFLKEKNPNIKVYGIEPS--------ESAVLNGGQPG----- 123
D +A +G G G F+ + +K+ G+E SA LN GQ G
Sbjct: 220 DVIVACVGGGSNAMGIFYPFVND--KKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGM 277
Query: 124 -KHLIQGIGAGVIPPVLDV-AMLD-----------------EVITVSSEEAIETSKLLAL 164
+ +Q G I P + LD E +TV+ EEA++ L+
Sbjct: 278 LSYFLQD-EEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSR 336
Query: 165 KEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 197
EG++ + S A A A+++AK + ++I+V
Sbjct: 337 TEGIIPALESAHAVAYAMKLAKEM-SRDEIIIV 368
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 32.2 bits (74), Expect = 0.12
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 37/157 (23%)
Query: 74 GGKVDAFIAGIGTGGTVTGA-GRFLKEKNPNIKVYGIEPS--------ESAVLNGGQPG- 123
G DA +A +G G G FL + P +++ G E + +A G PG
Sbjct: 247 GRLPDAVVACVGGGSNAIGIFHAFLDD--PGVRLVGFEAAGDGVETGRHAATFTAGSPGA 304
Query: 124 -----KHLIQGIGAGVIPPVLDV-AMLD-----------------EVITVSSEEAIETSK 160
+L+Q G + A LD + ++ EA++
Sbjct: 305 FHGSFSYLLQD-EDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFG 363
Query: 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 197
LL EG++ I S A A A+++ G +IVV
Sbjct: 364 LLCRMEGIIPAIESAHAVAGALKLGVE-LGRGAVIVV 399
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 30.9 bits (70), Expect = 0.26
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 84 IGTGGTVTGAGRFLKE-KNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVL--- 139
IG G K +V GIE A + H++ G + P
Sbjct: 39 IGCSS-----GALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQ 93
Query: 140 -DVAMLDEVI 148
D + +V+
Sbjct: 94 FDCVIFGDVL 103
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 28.7 bits (64), Expect = 1.2
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 92 GAGRFLKE-KNPNIKVYGIEPSESAV 116
G F + + +E SE A+
Sbjct: 52 FKGDFTSRLQEHFNDITCVEASEEAI 77
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 28.2 bits (63), Expect = 2.1
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 68 EIWNDSGGKVDAFIAG-----IGTGGTVTGA-GRFLKEKNPNIKVYGIEPSES 114
+ + S +G G TG FL EK P ++ SE
Sbjct: 30 DFYGVSVSIASVDTENPDILDLGAG---TGLLSAFLMEKYPEATFTLVDMSEK 79
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 28.1 bits (62), Expect = 2.2
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 91 TGAGRFLKE---KNPNIKVYGIEPSESAVLN 118
TG G+ + +NP+ V ++ +S +
Sbjct: 36 TGDGKHPYKVARQNPSRLVVALDADKSRMEK 66
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 28.1 bits (63), Expect = 2.9
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 94 GRFLKE-KNPNIKVYGIEPSES 114
G L+ + ++ G EPS
Sbjct: 119 GIMLRTIQEAGVRHLGFEPSSG 140
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 28.0 bits (61), Expect = 3.2
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 20/107 (18%)
Query: 8 ERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 67
E RI L P+V + F + N ++ E
Sbjct: 94 EDRIHFDGLKGAA--RTPSVVTDLFDPETNPNANGY-------------LDKLAQELGRK 138
Query: 68 EIWNDSGGKVDAFIAGIGTGGTVTGAG-----RFLKEKNPNIKVYGI 109
+ VD F+ +G GG V + ++E+ V +
Sbjct: 139 FTNEEGEVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSML 185
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring,
membrane rotor, sodium transporter, H ION transport,
hydrolase, transmembrane; HET: LHG UMQ; 2.1A
{Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Length = 156
Score = 26.8 bits (59), Expect = 3.8
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 167 GLLVGISSGAAAAAAIR-VAKRPENAGKLIVV-IFPSA 202
GL GI+ G AAA I+ +AK+PE+A K I+
Sbjct: 103 GLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVET 140
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport,
glutaric acidemia type II; HET: FAD AMP; 2.60A
{Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Length = 307
Score = 26.7 bits (60), Expect = 5.7
Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 27/159 (16%)
Query: 74 GGKVDAFIAGIGTGG------TVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLI 127
G V AG + G + L ++ EP+ + ++ H+
Sbjct: 28 LGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAEDALYGHRLAEPTAALIVGLAGDYSHIA 87
Query: 128 QG---IGAGVIPPV---LDVAMLDEVITVSSEE----------AIETSKLLALKEGLLVG 171
V+P V LDV +L +V + + AI+ K K+ +
Sbjct: 88 APATTDAKNVMPRVAALLDVMVLSDVSAILDADTFERPIYAGNAIQVVKSKDAKKVFTIR 147
Query: 172 ISS----GAAAAAAIRVAKRPENAGKLIVVIFP-SAGER 205
+S G A + + G V + +R
Sbjct: 148 TASFDAAGEGGTAPVTETAAAADPGLSSWVADEVAESDR 186
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis
complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Length = 157
Score = 26.5 bits (58), Expect = 6.2
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 95 RFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLI 127
R + KN + + + E+ V N G L+
Sbjct: 61 RIVGNKNFHEVMLALTVLETCVKNCGHRFHVLV 93
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 26.7 bits (59), Expect = 6.6
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 79 AFIAGIGTGGTV----TGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQG 129
+ + G G GRF G+EPSE + G +++G
Sbjct: 40 QAVKCLLPEGRGVEIGVGTGRFAVPLK---IKIGVEPSERMAEIARKRGVFVLKG 91
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 26.5 bits (59), Expect = 7.6
Identities = 10/38 (26%), Positives = 10/38 (26%), Gaps = 8/38 (21%)
Query: 84 IGTGGTVTGAGRFLKE---KNPNIKVYGIEPSESAVLN 118
IG G G L P GIE V
Sbjct: 41 IGFGM-----GASLVAMAKDRPEQDFLGIEVHSPGVGA 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 8.3
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 13/38 (34%)
Query: 97 LKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGV 134
LK+ ++K+Y +SA P L I A +
Sbjct: 22 LKKLQASLKLY--AD-DSA------PA--L--AIKATM 46
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin
binding, STAM2, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2l0t_B
Length = 163
Score = 25.7 bits (56), Expect = 9.4
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 95 RFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLI 127
+ + K P++ + + + V N G+ +
Sbjct: 59 KRVNHKVPHVALQALTLLGACVANCGKIFHLEV 91
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Length = 326
Score = 26.0 bits (58), Expect = 9.6
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 169 LVGISSGAAAAAAI 182
L+G+S+GA
Sbjct: 90 LLGVSNGAGVGLIA 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.137 0.387
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,781,627
Number of extensions: 253855
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 82
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.0 bits)