BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027287
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 334 bits (856), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 167/204 (81%), Positives = 185/204 (90%)
Query: 15 NQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDG 74
+SKF RICVFCGSS GKKS+Y+DAA++LG ELV+RNIDLVYGGGS+GL GL+SQAV+DG
Sbjct: 9 QKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLVSQAVHDG 68
Query: 75 GRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLE 134
GRHVIG+IPKTL PRE+TGETVGEV+ VAD HQRKAE AKHSDAFIALPGGYGTLEELLE
Sbjct: 69 GRHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLE 128
Query: 135 VITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKM 194
VITWAQLGIHDKPVGLLNVDGYYNSLL+FIDKAVEEGFISP AR IIVSAP AKEL+ K+
Sbjct: 129 VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKL 188
Query: 195 EEYFPQHERVASKLSWENEQFGLN 218
EEY P HERVA+KL WE E+ G +
Sbjct: 189 EEYAPCHERVATKLCWEXERIGYS 212
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|1YDH|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|2Q4D|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
pdb|2Q4D|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
Length = 216
Score = 241 bits (616), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/206 (66%), Positives = 160/206 (77%)
Query: 14 NNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYD 73
N +S+F +ICVFCGS +G + + DAAIELG ELV R IDLVYGGGSVGL GLIS+ VY+
Sbjct: 4 NQRSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLXGLISRRVYE 63
Query: 74 GGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELL 133
GG HV+G+IPK L P EI+GETVG+V+ VAD H+RKA A+ ++AFIALPGGYGT EELL
Sbjct: 64 GGLHVLGIIPKALXPIEISGETVGDVRVVADXHERKAAXAQEAEAFIALPGGYGTXEELL 123
Query: 134 EVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNK 193
E ITW+QLGIH K VGLLNVDGYYN+LL D VEEGFI P AR+I+VSAP AKEL K
Sbjct: 124 EXITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELXEK 183
Query: 194 MEEYFPQHERVASKLSWENEQFGLNP 219
EEY P H VAS SW+ E+ G P
Sbjct: 184 XEEYTPSHXHVASHESWKVEELGDYP 209
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|B Chain B, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|C Chain C, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|D Chain D, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|E Chain E, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|F Chain F, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|G Chain G, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|H Chain H, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
Length = 191
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 109/183 (59%), Gaps = 1/183 (0%)
Query: 22 ICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81
ICVF GS+ G YK A ELG + I LVYGG VGL G I+ A+ + G IGV
Sbjct: 4 ICVFAGSNPGGNEAYKRKAAELGVYXAEQGIGLVYGGSRVGLXGTIADAIXENGGTAIGV 63
Query: 82 IPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQL 141
P L E+ + + E+ V H+RKA+ ++ +D FI+ PGG+GT EEL EV+ WAQ+
Sbjct: 64 XPSGLFSGEVVHQNLTELIEVNGXHERKAKXSELADGFISXPGGFGTYEELFEVLCWAQI 123
Query: 142 GIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEY-FPQ 200
GIH KP+GL NV+GY+ + +++EGF + + +I S+ EL+ + + Y +P
Sbjct: 124 GIHQKPIGLYNVNGYFEPXXKXVKYSIQEGFSNESHLKLIHSSSRPDELIEQXQNYSYPI 183
Query: 201 HER 203
E+
Sbjct: 184 LEK 186
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
pdb|3QUA|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
Length = 199
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 99/179 (55%), Gaps = 1/179 (0%)
Query: 14 NNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYD 73
Q + +CV+C S + AA E+G + AR LV GGG+V MG ++QA
Sbjct: 17 EGQDRQWAVCVYCASGPTHPELLELAA-EVGSSIAARGWTLVSGGGNVSAMGAVAQAARA 75
Query: 74 GGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELL 133
G H +GVIPK L+ RE+ E+ M +RK EM SDAFIALPGG GTLEE
Sbjct: 76 KGGHTVGVIPKALVHRELADVDAAELIVTDTMRERKREMEHRSDAFIALPGGIGTLEEFF 135
Query: 134 EVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMN 192
E T LG+HDKP+ LL+ G+Y+ LLT++ V G++S A +V N + +
Sbjct: 136 EAWTAGYLGMHDKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDNVEAALE 194
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|C Chain C, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|D Chain D, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|E Chain E, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|F Chain F, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|G Chain G, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|H Chain H, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
Length = 189
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%)
Query: 54 LVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMA 113
LV+GGG V MG +S A G +GVIPK L+ RE+ E+ M +RK M
Sbjct: 47 LVWGGGHVSAMGAVSSAARAHGGWTVGVIPKMLVHRELADHDADELVVTETMWERKQVME 106
Query: 114 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFI 173
++AFI LPGG GTL+ELL+V T LG+HDK + +L+ G+++ L ++ + + G++
Sbjct: 107 DRANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYV 166
Query: 174 SPNARHIIVSAPNAKELMN 192
S A ++ N + +
Sbjct: 167 SRTAMERLIVVDNLDDALQ 185
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 108 RKAEMAKHSDAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLTFIDK 166
RK +++ F+ LPGG+GTL+EL EV+ Q +H PV LL+ GY+ L+ ++
Sbjct: 124 RKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLD-RGYWEGLVRWLAF 182
Query: 167 AVEEGFISPNARHIIVSAPNAKELMNKME 195
++ + P + +E++ ++
Sbjct: 183 LRDQKAVGPEDLQLFRLTDEPEEVVQALK 211
>pdb|1RCU|A Chain A, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|B Chain B, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|C Chain C, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|D Chain D, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
Length = 195
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 16/106 (15%)
Query: 34 STYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITG 93
S +D +ELG+ L A+ LV+ GG G+ L+SQ V + G V+G++P
Sbjct: 41 SELRDICLELGRTL-AKKGYLVFNGGRDGVXELVSQGVREAGGTVVGILPD--------- 90
Query: 94 ETVGE------VKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELL 133
E G VK D R + +++D +++ G GT E+L
Sbjct: 91 EEAGNPYLSVAVKTGLDFQXRSFVLLRNADVVVSIGGEIGTAIEIL 136
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 55/141 (39%), Gaps = 4/141 (2%)
Query: 22 ICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81
+ VF S + + G+ L L GG G L ++ V G V+GV
Sbjct: 4 LAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGXEAL-ARGVKAKGGLVVGV 62
Query: 82 IPKTLMP-REITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQ 140
P R V P A + QR + ++ALPGG GTL EL V+ W
Sbjct: 63 TAPAFFPERRGPNPFVDLELPAATLPQRIGRLLDLGAGYLALPGGVGTLAEL--VLAWNL 120
Query: 141 LGIHDKPVGLLNVDGYYNSLL 161
L + L VD Y+ LL
Sbjct: 121 LYLRRGVGRPLAVDPYWLGLL 141
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|B Chain B, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|C Chain C, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|D Chain D, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|3GH1|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|C Chain C, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|D Chain D, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
Length = 462
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 22/147 (14%)
Query: 42 ELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRH------VIGVIPKTLMPREITGET 95
E+G EL R +++ G G G A + +G+ +++ E
Sbjct: 168 EVGHELGLRELNICTGCGPGAXEGPXKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPNPI 227
Query: 96 VGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKP-------- 147
V E+ D+ +R + + I PGG GT EELL + LGI P
Sbjct: 228 VNELVIXPDIEKRLEAFVRXAHGIIIFPGGPGTAEELLYI-----LGIXXHPENADQPXP 282
Query: 148 ---VGLLNVDGYYNSLLTFIDKAVEEG 171
G + Y+ SL FI + E
Sbjct: 283 IVLTGPKQSEAYFRSLDKFITDTLGEA 309
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 139 AQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP---NAKELMN--K 193
AQ D P G L VD S F DK EG I A+ +++SAP AK ++
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 194 MEEYFPQHERVASKLS 209
EY P V S S
Sbjct: 150 QHEYSPASHHVVSNAS 165
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 139 AQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP---NAKELMN--K 193
AQ D P G L VD S F DK EG I A+ +++SAP AK ++
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 194 MEEYFPQHERVASKLS 209
EY P V S S
Sbjct: 150 QHEYSPASHHVVSNAS 165
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 139 AQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP---NAKELMNKM- 194
AQ D P G L V+ S F KA EG + AR +++SAP AK L+ +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 195 -EEYFPQHERVASKLS 209
EY P V S S
Sbjct: 150 HHEYNPSEHHVVSNAS 165
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 139 AQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP---NAKELMNKM- 194
AQ D P G L V+ S F KA EG + AR +++SAP AK L+ +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 195 -EEYFPQHERVASKLS 209
EY P V S S
Sbjct: 150 HHEYNPSEHHVVSNAS 165
>pdb|3BQ9|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
pdb|3BQ9|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
Length = 460
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 42 ELGKELVARNIDLVYGGGSVGLMGLISQAV-------YDGGRHVIGVIPKTLMPREITGE 94
++G + R +++ G G + G + A +GGR+ +G+ ++ E
Sbjct: 166 DVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRY-LGLTEPGIIAAEPPNP 224
Query: 95 TVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVI 136
V E+ + D+ +R + + + PGG GT EELL ++
Sbjct: 225 IVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLL 266
>pdb|3OFM|A Chain A, Structure Of A Human Ck2alpha Prime, The Paralog Isoform
Of The Catalytic Subunit Of Protein Kinase Ck2 From Homo
Sapiens
Length = 350
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 151 LNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKLSW 210
+++D ++N +L + E FI RH++ +P A +L++K+ Y Q +R+ +K +
Sbjct: 264 IDLDPHFNDILGQHSRKRWENFIHSENRHLV--SPEALDLLDKLLRYDHQ-QRLTAKEAM 320
Query: 211 ENEQF 215
E+ F
Sbjct: 321 EHPYF 325
>pdb|3E3B|X Chain X, Crystal Structure Of Catalytic Subunit Of Human Protein
Kinase Ck2alpha Prime With A Potent Indazole-Derivative
Inhibitor
Length = 339
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 151 LNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKLSW 210
+++D ++N +L + E FI RH++ +P A +L++K+ Y Q +R+ +K +
Sbjct: 269 IDLDPHFNDILGQHSRKRWENFIHSENRHLV--SPEALDLLDKLLRYDHQ-QRLTAKEAM 325
Query: 211 ENEQF 215
E+ F
Sbjct: 326 EHPYF 330
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase
Length = 247
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 152 NVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKLS-W 210
N DG Y + D++ E I+ I+ A N EL++ M+EY+P +E S W
Sbjct: 57 NCDGTYQE---YCDESREYSNITS-----ILEAQNRTELLSYMKEYWPDYEGADEDESFW 108
Query: 211 ENE 213
E+E
Sbjct: 109 EHE 111
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases
As Antitumorigenic Agents
Length = 237
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 152 NVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKLS-W 210
N DG Y + D++ E I+ I+ A N EL++ M+EY+P +E S W
Sbjct: 57 NCDGTYQE---YCDESREYSNITS-----ILEAQNRTELLSYMKEYWPDYEGADEDESFW 108
Query: 211 ENE 213
E+E
Sbjct: 109 EHE 111
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 139 AQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP---NAKELMNKME 195
AQ D P G L V+ S F K+ EG + AR +++SAP AK + +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVN 149
Query: 196 E--YFPQHERVASKLS 209
Y P+ + V S S
Sbjct: 150 HNNYNPREQHVVSNAS 165
>pdb|2IZ5|A Chain A, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|B Chain B, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|C Chain C, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|D Chain D, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ6|A Chain A, Structure Of The Chlamydomonas Rheinhardtii Moco Carrier
Protein
pdb|2IZ6|B Chain B, Structure Of The Chlamydomonas Rheinhardtii Moco Carrier
Protein
pdb|2IZ7|A Chain A, Structure Of Moco Carrier Protein From Chlamydomonas
Reinhardtii
pdb|2IZ7|B Chain B, Structure Of Moco Carrier Protein From Chlamydomonas
Reinhardtii
Length = 176
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 25/145 (17%)
Query: 31 GKKSTYKDAAI---ELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLM 87
GK T ++ + ELGK++ L+ GG S+G+M + + G IGV+P
Sbjct: 22 GKADTAENQLVMANELGKQIATHGWILLTGGRSLGVMHEAMKGAKEAGGTTIGVLP---- 77
Query: 88 PREITGETVGEVKPVADM-------HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQ 140
G E+ D+ R A S+ +A+ G GT E+ +
Sbjct: 78 -----GPDTSEISDAVDIPIVTGLGSARDNINALSSNVLVAVGMGPGTAAEVALALK--- 129
Query: 141 LGIHDKPVGLLNVDGYYNSLLTFID 165
KPV LL T +D
Sbjct: 130 ---AKKPVVLLGTQPEAEKFFTSLD 151
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 106 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFID 165
H R A H D I + G ++ T+ + + P G NVD +S F +
Sbjct: 59 HGRYAGEVSHDDKHIIVDGK--------KIATYQERDPANLPWGSSNVDIAIDSTGVFKE 110
Query: 166 KAVEEGFISPNARHIIVSAPNAKELMNKM---EEYFPQHERVASKLS 209
+ I A+ ++++AP++ M M EE + ++ S S
Sbjct: 111 LDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNAS 157
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
Length = 332
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 106 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFID 165
H R A H D I + G ++ T+ + + P G NVD +S F +
Sbjct: 51 HGRYAGEVSHDDKHIIVDGK--------KIATYQERDPANLPWGSSNVDIAIDSTGVFKE 102
Query: 166 KAVEEGFISPNARHIIVSAPNAKELMNKM---EEYFPQHERVASKLS 209
+ I A+ ++++AP++ M M EE + ++ S S
Sbjct: 103 LDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNAS 149
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 67 ISQAVYDGGRHVIGVIPK-TLMPREITGETV--GEVKPVADMHQRKAEMAKHSDAFIALP 123
ISQ R IGV+P+ T++ + + + G V D + A+ A DA +A P
Sbjct: 118 ISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP 177
Query: 124 GGYGT 128
GY T
Sbjct: 178 EGYRT 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,879,825
Number of Sequences: 62578
Number of extensions: 295028
Number of successful extensions: 796
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 35
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)