Query 027287
Match_columns 225
No_of_seqs 146 out of 1192
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:41:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 2E-54 4.4E-59 361.9 21.1 178 20-197 1-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 4.1E-44 8.9E-49 305.6 20.4 184 16-200 11-198 (205)
3 TIGR00725 conserved hypothetic 100.0 1.9E-41 4.1E-46 278.9 19.2 157 19-194 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 1.7E-38 3.7E-43 254.0 15.3 131 64-194 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.7 6.1E-15 1.3E-19 127.3 17.2 155 20-193 45-219 (220)
6 PF02481 DNA_processg_A: DNA r 99.4 1.1E-11 2.4E-16 106.4 12.7 144 18-171 43-206 (212)
7 PRK10736 hypothetical protein; 99.3 9.6E-11 2.1E-15 108.3 17.1 159 19-196 107-285 (374)
8 COG0758 Smf Predicted Rossmann 99.1 1.8E-09 4E-14 99.0 15.8 160 20-198 112-290 (350)
9 PF12694 MoCo_carrier: Putativ 96.9 0.0092 2E-07 48.5 9.6 93 54-153 1-98 (145)
10 KOG3614 Ca2+/Mg2+-permeable ca 95.2 0.24 5.1E-06 52.5 11.8 153 20-176 119-326 (1381)
11 PF06908 DUF1273: Protein of u 94.9 1.1 2.3E-05 37.7 13.1 129 19-153 1-168 (177)
12 PF05014 Nuc_deoxyrib_tr: Nucl 94.9 0.08 1.7E-06 40.5 5.8 46 103-154 49-98 (113)
13 PF13528 Glyco_trans_1_3: Glyc 94.0 1.2 2.5E-05 39.2 12.0 124 50-196 192-316 (318)
14 TIGR01133 murG undecaprenyldip 93.8 3.3 7.1E-05 36.6 14.7 73 111-199 246-320 (348)
15 PF11071 DUF2872: Protein of u 92.8 3.3 7E-05 33.4 11.4 74 106-195 63-137 (141)
16 PF10686 DUF2493: Protein of u 92.7 1.3 2.8E-05 31.7 8.3 61 23-85 6-67 (71)
17 cd03784 GT1_Gtf_like This fami 92.6 2.3 5E-05 38.7 12.0 72 111-199 300-371 (401)
18 PRK10565 putative carbohydrate 91.3 0.88 1.9E-05 44.1 8.0 127 50-195 254-384 (508)
19 TIGR03646 YtoQ_fam YtoQ family 91.3 6.8 0.00015 31.7 11.6 74 106-195 66-140 (144)
20 PF06258 Mito_fiss_Elm1: Mitoc 91.1 11 0.00025 34.2 14.6 77 112-197 225-308 (311)
21 TIGR01426 MGT glycosyltransfer 90.7 6.1 0.00013 36.0 12.7 70 112-199 288-358 (392)
22 PRK13660 hypothetical protein; 90.2 7.9 0.00017 32.7 11.8 108 41-152 33-167 (182)
23 COG3660 Predicted nucleoside-d 89.8 12 0.00026 33.9 13.1 58 112-178 241-299 (329)
24 PRK12446 undecaprenyldiphospho 89.7 13 0.00028 34.0 13.9 73 111-198 248-323 (352)
25 COG0707 MurG UDP-N-acetylgluco 88.4 21 0.00045 33.1 15.4 80 103-199 240-323 (357)
26 PLN02605 monogalactosyldiacylg 87.7 12 0.00026 34.1 12.3 72 108-199 275-346 (382)
27 PRK00025 lpxB lipid-A-disaccha 87.6 5.8 0.00013 35.7 10.0 32 110-152 256-287 (380)
28 cd03785 GT1_MurG MurG is an N- 87.3 20 0.00043 31.6 15.2 77 107-199 244-323 (350)
29 COG2185 Sbm Methylmalonyl-CoA 86.5 2.7 5.9E-05 34.2 6.5 43 38-81 27-69 (143)
30 TIGR00215 lpxB lipid-A-disacch 85.2 23 0.0005 32.7 12.9 76 112-200 264-347 (385)
31 TIGR03590 PseG pseudaminic aci 84.0 15 0.00032 32.4 10.6 37 106-153 232-268 (279)
32 TIGR00661 MJ1255 conserved hyp 83.7 31 0.00068 30.7 13.9 105 50-172 188-293 (321)
33 PF04101 Glyco_tran_28_C: Glyc 83.5 1.1 2.3E-05 36.0 2.9 34 110-153 67-100 (167)
34 COG1597 LCB5 Sphingosine kinas 79.3 3.6 7.9E-05 37.1 5.0 46 39-85 46-92 (301)
35 KOG4022 Dihydropteridine reduc 74.8 17 0.00037 30.9 7.4 71 49-126 2-83 (236)
36 TIGR03575 selen_PSTK_euk L-ser 74.6 18 0.00039 33.4 8.3 49 145-196 125-174 (340)
37 TIGR00196 yjeF_cterm yjeF C-te 74.6 19 0.0004 31.5 8.1 42 110-155 87-128 (272)
38 COG1832 Predicted CoA-binding 73.7 4.9 0.00011 32.6 3.8 37 16-57 13-49 (140)
39 PRK13609 diacylglycerol glucos 72.9 18 0.00039 32.7 7.8 76 104-199 262-337 (380)
40 PRK09267 flavodoxin FldA; Vali 72.1 41 0.00089 27.0 9.1 26 20-48 2-27 (169)
41 COG1819 Glycosyl transferases, 70.9 29 0.00063 32.6 8.9 128 47-198 234-366 (406)
42 PRK05749 3-deoxy-D-manno-octul 69.7 92 0.002 28.6 15.9 82 98-199 303-387 (425)
43 PRK13608 diacylglycerol glucos 68.5 14 0.0003 34.0 6.2 74 105-198 263-336 (391)
44 PRK08105 flavodoxin; Provision 68.1 7.1 0.00015 31.4 3.7 34 19-55 1-34 (149)
45 PRK13337 putative lipid kinase 67.9 13 0.00029 33.0 5.8 43 41-84 47-91 (304)
46 PRK00861 putative lipid kinase 67.8 11 0.00025 33.3 5.3 42 41-84 47-89 (300)
47 KOG2968 Predicted esterase of 67.4 3.9 8.5E-05 42.4 2.4 48 41-90 829-887 (1158)
48 PF00781 DAGK_cat: Diacylglyce 66.7 9.9 0.00021 29.3 4.1 43 42-85 44-91 (130)
49 PRK09004 FMN-binding protein M 66.5 7.1 0.00015 31.3 3.4 34 19-55 1-34 (146)
50 PRK11914 diacylglycerol kinase 65.4 99 0.0021 27.4 10.9 18 119-136 67-84 (306)
51 PRK13055 putative lipid kinase 64.8 15 0.00033 33.3 5.6 43 41-84 49-93 (334)
52 COG3613 Nucleoside 2-deoxyribo 64.1 61 0.0013 27.3 8.5 53 106-164 59-119 (172)
53 cd01171 YXKO-related B.subtili 63.8 28 0.0006 29.9 6.8 41 112-156 74-114 (254)
54 PRK04539 ppnK inorganic polyph 63.7 38 0.00082 30.6 7.8 61 16-81 2-98 (296)
55 COG1057 NadD Nicotinic acid mo 63.3 10 0.00023 32.3 3.9 41 18-58 1-42 (197)
56 smart00046 DAGKc Diacylglycero 63.0 9.5 0.00021 29.5 3.4 40 119-161 52-93 (124)
57 PRK00696 sucC succinyl-CoA syn 62.8 1.3E+02 0.0028 27.8 14.1 71 116-197 311-384 (388)
58 PRK00726 murG undecaprenyldiph 61.1 1.2E+02 0.0026 26.9 15.0 79 104-199 241-323 (357)
59 COG0549 ArcC Carbamate kinase 61.0 21 0.00045 32.6 5.5 28 97-124 207-234 (312)
60 PRK02645 ppnK inorganic polyph 60.7 16 0.00034 33.1 4.8 106 18-171 2-116 (305)
61 PRK07313 phosphopantothenoylcy 60.1 38 0.00082 28.3 6.8 88 112-199 74-179 (182)
62 PF13607 Succ_CoA_lig: Succiny 59.9 61 0.0013 25.9 7.6 83 51-154 3-90 (138)
63 COG3573 Predicted oxidoreducta 59.9 22 0.00048 33.5 5.7 83 52-142 141-244 (552)
64 PRK14569 D-alanyl-alanine synt 59.9 24 0.00051 31.4 5.8 38 19-56 3-40 (296)
65 TIGR00060 L18_bact ribosomal p 59.3 26 0.00057 27.4 5.2 40 37-76 65-112 (114)
66 COG0240 GpsA Glycerol-3-phosph 59.2 1.5E+02 0.0033 27.4 11.6 43 19-70 1-43 (329)
67 PRK11914 diacylglycerol kinase 58.5 21 0.00045 31.7 5.2 44 39-84 52-96 (306)
68 cd06259 YdcF-like YdcF-like. Y 58.4 52 0.0011 25.6 7.0 11 117-127 1-11 (150)
69 PRK03378 ppnK inorganic polyph 57.8 62 0.0013 29.1 8.1 62 16-81 2-93 (292)
70 COG0300 DltE Short-chain dehyd 56.7 1.2E+02 0.0026 27.1 9.6 59 19-85 6-64 (265)
71 PRK05723 flavodoxin; Provision 56.6 13 0.00029 30.0 3.3 33 20-55 1-33 (151)
72 PRK06703 flavodoxin; Provision 55.9 98 0.0021 24.3 12.5 32 20-54 2-33 (151)
73 COG0796 MurI Glutamate racemas 55.5 1.6E+02 0.0034 26.5 16.4 155 33-200 49-222 (269)
74 COG0716 FldA Flavodoxins [Ener 55.2 19 0.00042 28.6 4.1 34 19-55 1-34 (151)
75 PRK02155 ppnK NAD(+)/NADH kina 55.2 79 0.0017 28.4 8.4 61 17-81 3-93 (291)
76 TIGR00640 acid_CoA_mut_C methy 55.1 54 0.0012 25.9 6.6 43 38-81 17-59 (132)
77 PRK13059 putative lipid kinase 55.0 32 0.00068 30.6 5.8 33 115-151 56-88 (295)
78 PF00861 Ribosomal_L18p: Ribos 55.0 46 0.00099 25.9 6.0 41 37-77 70-118 (119)
79 PRK06703 flavodoxin; Provision 54.9 57 0.0012 25.6 6.8 14 67-80 105-118 (151)
80 PF01256 Carb_kinase: Carbohyd 54.5 1.5E+02 0.0032 25.9 9.8 126 54-197 2-134 (242)
81 COG0063 Predicted sugar kinase 54.4 1.7E+02 0.0036 26.4 13.0 131 49-195 31-168 (284)
82 PRK06973 nicotinic acid mononu 54.0 22 0.00048 31.2 4.5 36 14-49 16-51 (243)
83 PF00781 DAGK_cat: Diacylglyce 53.7 22 0.00048 27.3 4.1 39 112-152 48-89 (130)
84 cd04193 UDPGlcNAc_PPase UDPGlc 53.2 97 0.0021 28.3 8.7 78 108-196 6-93 (323)
85 PF05159 Capsule_synth: Capsul 53.1 14 0.00031 32.1 3.2 38 110-159 194-231 (269)
86 cd03820 GT1_amsD_like This fam 52.6 85 0.0018 26.2 7.9 73 107-199 244-318 (348)
87 cd00411 Asparaginase Asparagin 52.5 36 0.00079 31.0 5.8 36 115-153 78-113 (323)
88 PF01820 Dala_Dala_lig_N: D-al 52.2 19 0.00042 27.7 3.5 36 20-55 1-36 (117)
89 TIGR00519 asnASE_I L-asparagin 51.9 36 0.00079 31.2 5.8 49 114-165 76-129 (336)
90 PLN02586 probable cinnamyl alc 51.9 1.8E+02 0.0038 26.3 10.3 83 51-136 185-268 (360)
91 COG1010 CobJ Precorrin-3B meth 51.8 1.7E+02 0.0038 25.9 11.2 108 43-154 64-196 (249)
92 PRK12359 flavodoxin FldB; Prov 51.7 77 0.0017 26.3 7.2 38 18-55 78-116 (172)
93 TIGR03702 lip_kinase_YegS lipi 51.4 30 0.00065 30.6 5.0 43 41-84 42-88 (293)
94 cd07025 Peptidase_S66 LD-Carbo 50.4 1.3E+02 0.0027 26.7 8.9 58 106-170 48-110 (282)
95 PRK12361 hypothetical protein; 49.6 33 0.00071 33.3 5.4 43 40-84 286-329 (547)
96 cd03786 GT1_UDP-GlcNAc_2-Epime 49.1 1.9E+02 0.004 25.5 16.3 69 107-200 269-337 (363)
97 PRK06756 flavodoxin; Provision 48.2 32 0.00069 27.0 4.2 32 20-54 2-33 (148)
98 PRK13054 lipid kinase; Reviewe 48.2 37 0.0008 30.2 5.1 43 41-84 46-92 (300)
99 PRK13057 putative lipid kinase 48.1 46 0.001 29.3 5.7 32 115-152 50-81 (287)
100 PRK06029 3-octaprenyl-4-hydrox 47.6 39 0.00084 28.5 4.8 81 115-196 78-168 (185)
101 TIGR01501 MthylAspMutase methy 47.3 1.5E+02 0.0032 23.7 12.2 41 40-81 18-58 (134)
102 PLN02958 diacylglycerol kinase 47.1 41 0.00089 32.4 5.5 44 40-84 157-207 (481)
103 PRK05333 NAD-dependent deacety 46.8 54 0.0012 29.2 5.9 75 106-202 205-281 (285)
104 cd07062 Peptidase_S66_mccF_lik 46.4 1.8E+02 0.0039 26.1 9.3 92 21-148 2-98 (308)
105 cd06353 PBP1_BmpA_Med_like Per 46.3 1.1E+02 0.0024 26.5 7.7 54 21-82 154-207 (258)
106 cd07227 Pat_Fungal_NTE1 Fungal 46.2 17 0.00037 32.4 2.6 30 42-73 1-30 (269)
107 cd00587 HCP_like The HCP famil 46.0 47 0.001 29.7 5.3 41 17-59 92-132 (258)
108 cd03795 GT1_like_4 This family 45.9 1.3E+02 0.0029 25.8 8.2 74 106-199 254-331 (357)
109 PRK09880 L-idonate 5-dehydroge 45.9 1.7E+02 0.0037 26.0 9.1 29 51-81 171-200 (343)
110 CHL00200 trpA tryptophan synth 45.9 1.1E+02 0.0023 27.2 7.6 43 124-171 72-119 (263)
111 COG1063 Tdh Threonine dehydrog 45.9 85 0.0018 28.6 7.2 83 51-136 170-259 (350)
112 CHL00139 rpl18 ribosomal prote 45.5 51 0.0011 25.5 4.8 39 38-76 61-107 (109)
113 PRK14077 pnk inorganic polypho 45.2 91 0.002 28.0 7.1 58 18-81 9-94 (287)
114 smart00046 DAGKc Diacylglycero 45.1 49 0.0011 25.5 4.8 32 53-85 52-87 (124)
115 cd04180 UGPase_euk_like Eukary 44.8 71 0.0015 28.2 6.3 69 118-198 2-76 (266)
116 PRK09922 UDP-D-galactose:(gluc 44.6 1.4E+02 0.0029 26.7 8.3 76 107-201 249-325 (359)
117 TIGR00421 ubiX_pad polyprenyl 44.3 51 0.0011 27.5 5.1 80 115-196 75-165 (181)
118 PF12965 DUF3854: Domain of un 44.1 1.2E+02 0.0027 23.9 7.0 51 18-69 67-124 (130)
119 PRK09355 hydroxyethylthiazole 44.0 1E+02 0.0023 26.9 7.2 41 112-156 51-94 (263)
120 PF13614 AAA_31: AAA domain; P 43.9 52 0.0011 25.5 4.9 33 20-55 1-33 (157)
121 PRK13337 putative lipid kinase 43.7 1.5E+02 0.0031 26.4 8.2 32 116-151 58-89 (304)
122 PRK14572 D-alanyl-alanine synt 43.5 48 0.001 30.2 5.2 39 19-57 1-39 (347)
123 TIGR01182 eda Entner-Doudoroff 43.4 1.2E+02 0.0026 26.0 7.3 108 18-136 7-118 (204)
124 cd07225 Pat_PNPLA6_PNPLA7 Pata 43.3 27 0.00057 31.6 3.4 31 41-73 5-35 (306)
125 TIGR02113 coaC_strep phosphopa 43.2 43 0.00093 27.9 4.4 84 114-197 75-176 (177)
126 PRK00861 putative lipid kinase 43.1 64 0.0014 28.5 5.8 30 116-151 58-87 (300)
127 PRK13057 putative lipid kinase 42.7 54 0.0012 28.9 5.2 43 40-84 40-82 (287)
128 PRK02649 ppnK inorganic polyph 42.7 1.3E+02 0.0028 27.3 7.8 31 19-52 1-31 (305)
129 PRK13937 phosphoheptose isomer 42.6 74 0.0016 26.3 5.8 31 33-63 21-51 (188)
130 COG0593 DnaA ATPase involved i 42.6 1.2E+02 0.0025 29.0 7.7 103 38-151 96-214 (408)
131 TIGR03702 lip_kinase_YegS lipi 42.4 1.7E+02 0.0036 25.8 8.4 32 119-152 55-87 (293)
132 TIGR01007 eps_fam capsular exo 42.3 68 0.0015 26.4 5.6 39 14-55 12-50 (204)
133 KOG3974 Predicted sugar kinase 42.2 1.8E+02 0.004 26.4 8.3 47 108-157 94-143 (306)
134 COG2081 Predicted flavoprotein 42.2 27 0.00057 33.2 3.3 27 53-81 6-32 (408)
135 PRK09250 fructose-bisphosphate 41.9 3E+02 0.0064 25.7 10.7 112 22-135 165-300 (348)
136 PF09152 DUF1937: Domain of un 41.8 39 0.00084 26.6 3.6 39 107-151 71-114 (116)
137 PF01320 Colicin_Pyocin: Colic 41.7 21 0.00045 26.6 2.0 48 151-202 27-79 (85)
138 PF12831 FAD_oxidored: FAD dep 41.6 29 0.00062 32.6 3.5 30 53-84 2-31 (428)
139 PRK09271 flavodoxin; Provision 41.3 38 0.00082 27.2 3.8 31 21-54 2-32 (160)
140 PF00534 Glycos_transf_1: Glyc 41.3 1.5E+02 0.0033 22.9 7.2 73 106-199 83-157 (172)
141 PF02608 Bmp: Basic membrane p 41.3 82 0.0018 28.1 6.2 56 21-82 163-220 (306)
142 cd03808 GT1_cap1E_like This fa 41.0 1.1E+02 0.0025 25.5 6.9 70 110-198 258-327 (359)
143 PRK01966 ddl D-alanyl-alanine 40.7 52 0.0011 29.7 4.9 37 19-55 3-39 (333)
144 PRK14568 vanB D-alanine--D-lac 40.7 52 0.0011 29.8 4.9 37 19-55 3-39 (343)
145 PRK02261 methylaspartate mutas 40.7 1.8E+02 0.004 23.0 13.7 40 41-81 21-60 (137)
146 COG1597 LCB5 Sphingosine kinas 40.6 74 0.0016 28.6 5.9 29 118-151 60-89 (301)
147 cd02072 Glm_B12_BD B12 binding 40.5 1.8E+02 0.004 23.0 9.8 40 41-81 17-56 (128)
148 KOG2683 Sirtuin 4 and related 40.5 34 0.00073 30.6 3.5 41 111-154 242-282 (305)
149 cd00432 Ribosomal_L18_L5e Ribo 40.1 61 0.0013 24.3 4.5 38 38-75 57-102 (103)
150 PTZ00032 60S ribosomal protein 39.9 53 0.0011 28.4 4.4 40 37-76 162-209 (211)
151 TIGR00147 lipid kinase, YegS/R 39.5 76 0.0017 27.8 5.7 31 53-84 60-91 (293)
152 PF00106 adh_short: short chai 39.3 45 0.00097 25.8 3.8 30 52-82 2-31 (167)
153 PRK08862 short chain dehydroge 39.0 1.7E+02 0.0037 24.5 7.6 54 20-81 6-59 (227)
154 PRK13054 lipid kinase; Reviewe 38.7 2E+02 0.0043 25.4 8.3 35 115-151 56-90 (300)
155 PF14359 DUF4406: Domain of un 38.6 69 0.0015 23.8 4.5 30 107-136 51-83 (92)
156 PF12146 Hydrolase_4: Putative 38.5 61 0.0013 23.1 4.1 34 19-56 15-48 (79)
157 PRK05568 flavodoxin; Provision 38.4 60 0.0013 25.0 4.4 31 20-53 2-32 (142)
158 PHA03392 egt ecdysteroid UDP-g 38.4 3.8E+02 0.0082 25.9 12.4 142 12-172 257-408 (507)
159 PF07429 Glyco_transf_56: 4-al 38.4 1.5E+02 0.0032 27.8 7.5 116 19-162 183-306 (360)
160 PF09314 DUF1972: Domain of un 38.0 67 0.0015 27.1 4.8 37 19-55 1-38 (185)
161 cd03825 GT1_wcfI_like This fam 38.0 1.9E+02 0.0041 24.9 8.0 71 108-199 257-329 (365)
162 COG3199 Predicted inorganic po 37.9 3.3E+02 0.0072 25.5 9.6 79 52-151 51-129 (355)
163 COG2515 Acd 1-aminocyclopropan 37.9 1.1E+02 0.0023 28.3 6.3 46 114-162 179-224 (323)
164 PRK01231 ppnK inorganic polyph 37.8 1.9E+02 0.0041 26.0 8.0 31 18-51 3-33 (295)
165 TIGR02153 gatD_arch glutamyl-t 37.7 85 0.0018 29.7 6.0 48 116-165 140-192 (404)
166 PRK01372 ddl D-alanine--D-alan 37.7 55 0.0012 28.7 4.5 38 20-57 5-42 (304)
167 cd03799 GT1_amsK_like This is 37.6 1.5E+02 0.0033 25.3 7.3 74 107-199 247-326 (355)
168 CHL00162 thiG thiamin biosynth 37.5 3.1E+02 0.0067 24.7 10.5 103 18-137 106-209 (267)
169 PRK06635 aspartate kinase; Rev 37.4 99 0.0021 28.6 6.4 34 25-59 8-43 (404)
170 PRK08887 nicotinic acid mononu 37.2 43 0.00092 27.6 3.5 24 19-42 1-24 (174)
171 PRK02645 ppnK inorganic polyph 37.2 2E+02 0.0043 26.0 8.1 29 51-81 59-87 (305)
172 PRK05579 bifunctional phosphop 37.2 1.8E+02 0.004 27.3 8.1 44 38-81 172-234 (399)
173 PRK14046 malate--CoA ligase su 37.2 3.5E+02 0.0077 25.3 14.2 115 56-197 262-384 (392)
174 COG3967 DltE Short-chain dehyd 37.1 44 0.00095 29.4 3.6 27 53-80 8-34 (245)
175 cd01408 SIRT1 SIRT1: Eukaryoti 36.8 78 0.0017 27.4 5.2 70 106-194 166-235 (235)
176 COG2984 ABC-type uncharacteriz 36.7 2.2E+02 0.0049 26.2 8.3 73 5-80 145-217 (322)
177 KOG0832 Mitochondrial/chloropl 36.7 1E+02 0.0022 27.3 5.8 46 34-79 91-136 (251)
178 cd03804 GT1_wbaZ_like This fam 36.7 2.1E+02 0.0046 25.0 8.2 73 106-199 252-325 (351)
179 PRK04885 ppnK inorganic polyph 36.6 2E+02 0.0044 25.5 7.9 55 21-81 2-67 (265)
180 TIGR01753 flav_short flavodoxi 36.5 1.6E+02 0.0035 22.2 6.5 7 74-80 109-115 (140)
181 PF13380 CoA_binding_2: CoA bi 36.4 66 0.0014 24.6 4.3 31 20-55 1-31 (116)
182 PF10087 DUF2325: Uncharacteri 36.4 1.2E+02 0.0027 22.1 5.6 91 54-166 3-95 (97)
183 PRK09461 ansA cytoplasmic aspa 36.3 96 0.0021 28.4 6.0 51 114-166 80-135 (335)
184 PRK03372 ppnK inorganic polyph 36.3 2.2E+02 0.0047 25.9 8.2 21 61-81 82-102 (306)
185 PRK14571 D-alanyl-alanine synt 36.3 74 0.0016 28.0 5.1 35 21-55 2-36 (299)
186 PRK00208 thiG thiazole synthas 36.3 3.1E+02 0.0068 24.4 12.9 103 18-137 92-195 (250)
187 cd03822 GT1_ecORF704_like This 36.3 1.3E+02 0.0028 25.7 6.6 70 107-199 259-333 (366)
188 PRK06756 flavodoxin; Provision 36.2 1.6E+02 0.0035 22.9 6.6 14 67-80 106-119 (148)
189 PRK13055 putative lipid kinase 36.1 1.1E+02 0.0024 27.6 6.4 32 116-151 60-91 (334)
190 KOG3349 Predicted glycosyltran 36.0 72 0.0016 26.6 4.5 137 19-197 3-144 (170)
191 PRK00358 pyrH uridylate kinase 35.8 56 0.0012 27.8 4.1 35 25-60 7-50 (231)
192 cd03801 GT1_YqgM_like This fam 35.8 1.5E+02 0.0032 24.8 6.7 68 109-198 269-339 (374)
193 PRK08210 aspartate kinase I; R 35.5 67 0.0015 29.8 4.9 39 21-60 3-45 (403)
194 TIGR01205 D_ala_D_alaTIGR D-al 35.4 51 0.0011 29.0 3.9 39 21-59 1-39 (315)
195 PRK04183 glutamyl-tRNA(Gln) am 35.3 1E+02 0.0022 29.4 6.1 47 116-165 153-204 (419)
196 cd04728 ThiG Thiazole synthase 35.2 3.2E+02 0.007 24.3 12.7 102 19-137 93-195 (248)
197 KOG1718 Dual specificity phosp 35.2 33 0.00071 29.1 2.4 50 115-168 94-156 (198)
198 TIGR01752 flav_long flavodoxin 35.0 1.4E+02 0.003 24.0 6.2 20 36-55 96-115 (167)
199 PRK03708 ppnK inorganic polyph 34.8 85 0.0019 28.0 5.3 35 20-57 1-35 (277)
200 PLN02945 nicotinamide-nucleoti 34.8 1E+02 0.0022 26.7 5.6 39 17-55 19-57 (236)
201 cd03819 GT1_WavL_like This fam 34.2 2E+02 0.0043 24.8 7.5 68 109-197 257-327 (355)
202 PF03853 YjeF_N: YjeF-related 34.1 34 0.00073 28.0 2.4 60 16-80 22-86 (169)
203 TIGR01754 flav_RNR ribonucleot 34.1 58 0.0012 25.4 3.7 31 21-54 2-32 (140)
204 cd02201 FtsZ_type1 FtsZ is a G 34.1 2.6E+02 0.0056 25.0 8.3 73 43-123 78-154 (304)
205 PF04016 DUF364: Domain of unk 33.9 59 0.0013 26.1 3.7 73 106-196 53-130 (147)
206 COG0252 AnsB L-asparaginase/ar 33.8 71 0.0015 29.7 4.7 35 116-153 101-135 (351)
207 TIGR00521 coaBC_dfp phosphopan 33.8 2.5E+02 0.0055 26.4 8.4 45 38-82 168-232 (390)
208 TIGR02075 pyrH_bact uridylate 33.6 58 0.0013 27.9 3.9 48 107-158 112-165 (233)
209 PF10727 Rossmann-like: Rossma 33.5 59 0.0013 25.6 3.6 31 16-55 7-37 (127)
210 PRK08979 acetolactate synthase 33.5 2.6E+02 0.0057 27.2 8.9 81 40-128 196-285 (572)
211 PRK05867 short chain dehydroge 33.2 2.2E+02 0.0048 23.7 7.4 33 19-59 9-41 (253)
212 cd04254 AAK_UMPK-PyrH-Ec UMP k 33.1 66 0.0014 27.5 4.2 36 25-60 7-50 (231)
213 KOG4175 Tryptophan synthase al 33.0 95 0.0021 27.2 4.9 34 128-164 78-111 (268)
214 PRK14138 NAD-dependent deacety 32.9 1.1E+02 0.0024 26.6 5.6 71 106-198 169-241 (244)
215 cd05009 SIS_GlmS_GlmD_2 SIS (S 32.7 2.2E+02 0.0049 21.7 8.5 91 40-153 3-97 (153)
216 PRK06935 2-deoxy-D-gluconate 3 32.7 2.6E+02 0.0057 23.4 7.8 33 18-58 14-46 (258)
217 TIGR00642 mmCoA_mut_beta methy 32.7 75 0.0016 31.8 4.9 52 11-66 538-589 (619)
218 PRK02649 ppnK inorganic polyph 32.6 1E+02 0.0022 28.0 5.4 53 114-172 67-126 (305)
219 PRK08085 gluconate 5-dehydroge 32.6 2.4E+02 0.0052 23.5 7.5 33 19-59 9-41 (254)
220 PRK09536 btuD corrinoid ABC tr 32.4 96 0.0021 29.2 5.4 71 64-134 279-357 (402)
221 PRK00625 shikimate kinase; Pro 32.4 1.6E+02 0.0035 24.1 6.2 85 36-122 59-149 (173)
222 cd04949 GT1_gtfA_like This fam 32.0 1.5E+02 0.0033 26.1 6.5 69 112-200 275-345 (372)
223 PRK08105 flavodoxin; Provision 31.9 1.1E+02 0.0025 24.3 5.1 40 40-80 68-120 (149)
224 PLN00141 Tic62-NAD(P)-related 31.5 84 0.0018 26.6 4.5 38 12-57 10-47 (251)
225 COG0394 Wzb Protein-tyrosine-p 31.4 1.6E+02 0.0034 23.5 5.8 36 19-58 2-37 (139)
226 PLN02275 transferase, transfer 31.4 3.7E+02 0.008 24.2 9.0 71 106-197 297-370 (371)
227 PTZ00075 Adenosylhomocysteinas 31.2 2.5E+02 0.0053 27.4 8.0 87 54-158 258-345 (476)
228 PRK05476 S-adenosyl-L-homocyst 31.2 1.5E+02 0.0033 28.3 6.5 87 52-156 214-301 (425)
229 cd04951 GT1_WbdM_like This fam 31.1 1.2E+02 0.0026 26.1 5.6 68 110-198 257-324 (360)
230 PF02729 OTCace_N: Aspartate/o 31.1 1.3E+02 0.0028 24.0 5.3 75 68-162 58-132 (142)
231 PF04230 PS_pyruv_trans: Polys 31.0 69 0.0015 26.3 3.9 41 114-154 62-108 (286)
232 TIGR02329 propionate_PrpR prop 31.0 5.2E+02 0.011 25.3 11.2 146 10-161 88-279 (526)
233 PRK13059 putative lipid kinase 30.9 1E+02 0.0022 27.3 5.1 38 46-84 51-90 (295)
234 PRK09124 pyruvate dehydrogenas 30.8 5.1E+02 0.011 25.2 12.3 80 40-127 191-277 (574)
235 PF14947 HTH_45: Winged helix- 30.7 68 0.0015 22.7 3.2 40 157-197 33-72 (77)
236 PRK06443 chorismate mutase; Va 30.5 86 0.0019 26.5 4.2 44 36-83 92-135 (177)
237 PF13692 Glyco_trans_1_4: Glyc 30.3 2.2E+02 0.0049 20.9 6.4 70 108-198 63-133 (135)
238 PRK07308 flavodoxin; Validated 30.3 1.9E+02 0.0042 22.4 6.2 18 63-80 101-118 (146)
239 PF03492 Methyltransf_7: SAM d 30.2 53 0.0012 30.1 3.2 43 155-197 198-243 (334)
240 COG0126 Pgk 3-phosphoglycerate 30.2 1.6E+02 0.0034 28.0 6.3 150 5-169 175-339 (395)
241 TIGR00936 ahcY adenosylhomocys 30.2 1.6E+02 0.0035 27.9 6.5 70 52-131 197-266 (406)
242 PRK07308 flavodoxin; Validated 30.2 70 0.0015 25.0 3.6 29 21-52 3-31 (146)
243 cd03132 GATase1_catalase Type 30.1 1.6E+02 0.0034 22.7 5.6 36 117-153 64-103 (142)
244 PRK08264 short chain dehydroge 29.9 3.1E+02 0.0067 22.4 7.9 11 115-125 73-83 (238)
245 PLN03050 pyridoxine (pyridoxam 29.8 92 0.002 27.3 4.5 31 20-55 61-91 (246)
246 cd03818 GT1_ExpC_like This fam 29.8 2.3E+02 0.0049 25.6 7.3 72 107-199 292-365 (396)
247 PRK10494 hypothetical protein; 29.7 1.2E+02 0.0026 26.7 5.3 11 116-126 79-89 (259)
248 COG0112 GlyA Glycine/serine hy 29.7 61 0.0013 30.8 3.5 42 38-79 291-342 (413)
249 PRK13146 hisH imidazole glycer 29.6 1.5E+02 0.0032 25.0 5.7 17 65-81 67-83 (209)
250 cd03807 GT1_WbnK_like This fam 29.3 1.8E+02 0.0038 24.5 6.2 65 111-199 264-331 (365)
251 KOG1201 Hydroxysteroid 17-beta 29.3 69 0.0015 29.2 3.7 28 50-78 38-65 (300)
252 PRK14077 pnk inorganic polypho 29.2 1.4E+02 0.003 26.9 5.6 51 115-171 64-121 (287)
253 PRK14573 bifunctional D-alanyl 29.0 1.1E+02 0.0024 31.3 5.6 38 18-55 450-487 (809)
254 PLN02271 serine hydroxymethylt 29.0 66 0.0014 32.0 3.8 42 38-79 442-493 (586)
255 cd04260 AAK_AKi-DapG-BS AAK_AK 29.0 70 0.0015 27.6 3.6 25 25-49 6-30 (244)
256 PRK15454 ethanol dehydrogenase 28.9 1.5E+02 0.0032 27.7 6.0 13 114-126 105-117 (395)
257 TIGR03088 stp2 sugar transfera 28.9 2.5E+02 0.0054 24.8 7.4 68 111-199 268-337 (374)
258 COG0163 UbiX 3-polyprenyl-4-hy 28.8 1.3E+02 0.0027 25.8 5.0 80 116-196 81-170 (191)
259 PRK02797 4-alpha-L-fucosyltran 28.8 3.5E+02 0.0075 25.0 8.1 115 20-162 145-267 (322)
260 cd00578 L-fuc_L-ara-isomerases 28.8 5E+02 0.011 24.4 13.1 93 20-154 1-97 (452)
261 cd06313 PBP1_ABC_sugar_binding 28.8 2.5E+02 0.0055 23.7 7.1 38 111-153 51-88 (272)
262 cd03814 GT1_like_2 This family 28.7 1.6E+02 0.0034 25.1 5.8 70 109-199 260-331 (364)
263 PF00258 Flavodoxin_1: Flavodo 28.6 72 0.0016 24.5 3.4 40 15-56 83-123 (143)
264 PRK13402 gamma-glutamyl kinase 28.5 97 0.0021 28.9 4.7 41 18-59 4-53 (368)
265 PRK11840 bifunctional sulfur c 28.4 4.8E+02 0.01 24.1 12.4 102 18-137 166-269 (326)
266 KOG2467 Glycine/serine hydroxy 28.4 68 0.0015 30.5 3.6 36 39-74 329-374 (477)
267 PRK14075 pnk inorganic polypho 28.4 2.2E+02 0.0047 25.0 6.7 52 20-81 1-68 (256)
268 COG0703 AroK Shikimate kinase 28.4 1.5E+02 0.0033 24.8 5.4 82 43-126 65-155 (172)
269 KOG1584 Sulfotransferase [Gene 28.3 1.2E+02 0.0026 27.6 5.1 57 124-199 152-214 (297)
270 PRK09004 FMN-binding protein M 28.2 1.6E+02 0.0034 23.4 5.3 9 72-80 110-118 (146)
271 COG0148 Eno Enolase [Carbohydr 28.2 2.3E+02 0.0049 27.1 6.9 69 107-176 319-387 (423)
272 COG0062 Uncharacterized conser 28.0 1.1E+02 0.0023 26.4 4.5 40 114-154 118-160 (203)
273 cd08185 Fe-ADH1 Iron-containin 27.9 3E+02 0.0066 25.2 7.9 13 114-126 82-94 (380)
274 PF03205 MobB: Molybdopterin g 27.7 1.6E+02 0.0034 23.3 5.2 32 20-55 1-32 (140)
275 COG2022 ThiG Uncharacterized e 27.6 4.5E+02 0.0097 23.5 10.0 115 17-153 98-212 (262)
276 PRK07890 short chain dehydroge 27.6 3E+02 0.0064 22.8 7.2 56 18-81 4-59 (258)
277 PRK03170 dihydrodipicolinate s 27.5 3.6E+02 0.0079 23.6 8.1 68 18-86 35-107 (292)
278 TIGR03449 mycothiol_MshA UDP-N 27.5 3E+02 0.0065 24.7 7.7 73 106-199 293-367 (405)
279 PRK13111 trpA tryptophan synth 27.3 1.7E+02 0.0038 25.8 5.9 42 128-172 72-118 (258)
280 PRK08277 D-mannonate oxidoredu 27.2 2.9E+02 0.0064 23.4 7.2 33 19-59 10-42 (278)
281 PLN02591 tryptophan synthase 27.1 1.6E+02 0.0034 26.0 5.6 40 128-171 62-106 (250)
282 cd04261 AAK_AKii-LysC-BS AAK_A 27.0 1.7E+02 0.0036 25.1 5.6 40 25-66 6-47 (239)
283 cd01412 SIRT5_Af1_CobB SIRT5_A 26.8 2.4E+02 0.0052 23.8 6.6 67 107-194 156-223 (224)
284 PRK14557 pyrH uridylate kinase 26.7 1E+02 0.0022 27.0 4.3 43 18-60 3-54 (247)
285 PRK07454 short chain dehydroge 26.7 3.4E+02 0.0073 22.3 7.4 59 15-81 2-60 (241)
286 cd05844 GT1_like_7 Glycosyltra 26.6 2.5E+02 0.0054 24.4 6.8 72 109-200 258-336 (367)
287 cd06320 PBP1_allose_binding Pe 26.5 1.2E+02 0.0026 25.4 4.7 33 22-56 2-34 (275)
288 KOG1098 Putative SAM-dependent 26.5 3.2E+02 0.0069 27.9 7.9 49 32-81 11-75 (780)
289 cd08184 Fe-ADH3 Iron-containin 26.5 2.7E+02 0.0058 25.6 7.2 12 115-126 81-92 (347)
290 TIGR01016 sucCoAbeta succinyl- 26.3 5.2E+02 0.011 23.8 13.3 70 116-196 311-383 (386)
291 COG0206 FtsZ Cell division GTP 26.3 4.8E+02 0.01 24.2 8.7 81 34-124 76-166 (338)
292 PF03358 FMN_red: NADPH-depend 26.2 1.6E+02 0.0035 22.8 5.0 33 21-54 2-34 (152)
293 PRK05866 short chain dehydroge 26.0 2.7E+02 0.0059 24.3 6.9 54 20-81 41-94 (293)
294 PRK14076 pnk inorganic polypho 26.0 3.4E+02 0.0073 26.8 8.2 65 13-81 284-378 (569)
295 cd03812 GT1_CapH_like This fam 26.0 2.9E+02 0.0062 23.8 7.1 72 109-200 260-331 (358)
296 PF04722 Ssu72: Ssu72-like pro 26.0 1.2E+02 0.0027 25.9 4.4 34 20-60 2-36 (195)
297 PF04007 DUF354: Protein of un 25.9 3.4E+02 0.0073 25.0 7.7 64 112-198 245-308 (335)
298 PLN02494 adenosylhomocysteinas 25.9 2.7E+02 0.0059 27.1 7.3 73 52-134 256-329 (477)
299 TIGR02690 resist_ArsH arsenica 25.9 1.6E+02 0.0034 25.5 5.2 46 107-155 82-138 (219)
300 PRK08569 rpl18p 50S ribosomal 25.8 1.4E+02 0.0031 25.5 4.8 41 37-77 79-129 (193)
301 TIGR00334 5S_RNA_mat_M5 ribonu 25.6 4.1E+02 0.0088 22.4 9.1 109 98-211 4-122 (174)
302 PRK09860 putative alcohol dehy 25.6 2.5E+02 0.0055 26.0 6.9 13 114-126 87-99 (383)
303 PRK06696 uridine kinase; Valid 25.5 2.1E+02 0.0045 24.1 5.9 44 11-58 14-57 (223)
304 cd04239 AAK_UMPK-like AAK_UMPK 25.4 96 0.0021 26.4 3.8 41 116-158 117-161 (229)
305 PF11834 DUF3354: Domain of un 25.4 1.6E+02 0.0036 20.8 4.4 33 117-155 19-51 (69)
306 PRK00071 nadD nicotinic acid m 25.3 1.1E+02 0.0024 25.5 4.2 27 19-45 3-29 (203)
307 PRK15484 lipopolysaccharide 1, 25.3 3.1E+02 0.0068 24.8 7.4 72 107-199 268-343 (380)
308 PTZ00378 hypothetical protein; 25.2 4.3E+02 0.0093 26.1 8.5 64 110-176 391-457 (518)
309 COG2085 Predicted dinucleotide 25.2 1.6E+02 0.0034 25.6 5.0 51 19-80 1-51 (211)
310 PRK05569 flavodoxin; Provision 24.8 1.1E+02 0.0023 23.6 3.7 60 113-172 46-112 (141)
311 TIGR03371 cellulose_yhjQ cellu 24.7 1.5E+02 0.0032 24.8 4.9 34 19-55 1-34 (246)
312 TIGR03151 enACPred_II putative 24.6 5.2E+02 0.011 23.2 10.3 92 43-137 79-181 (307)
313 PRK07109 short chain dehydroge 24.5 2.9E+02 0.0063 24.7 7.0 55 19-81 8-62 (334)
314 PRK06015 keto-hydroxyglutarate 24.4 3.4E+02 0.0074 23.1 7.0 108 18-136 3-114 (201)
315 COG3919 Predicted ATP-grasp en 24.4 2.1E+02 0.0046 26.6 5.9 90 118-216 5-117 (415)
316 PF00290 Trp_syntA: Tryptophan 24.4 1.2E+02 0.0025 27.0 4.2 40 128-170 70-110 (259)
317 TIGR00197 yjeF_nterm yjeF N-te 24.2 2E+02 0.0043 24.3 5.5 33 19-56 45-77 (205)
318 PRK11780 isoprenoid biosynthes 24.2 98 0.0021 26.6 3.6 38 20-58 2-40 (217)
319 cd02040 NifH NifH gene encodes 24.1 1.6E+02 0.0034 25.1 4.9 33 19-55 1-33 (270)
320 PF01202 SKI: Shikimate kinase 24.1 1.7E+02 0.0036 23.2 4.8 39 41-81 52-91 (158)
321 cd00952 CHBPH_aldolase Trans-o 24.0 3.9E+02 0.0084 23.9 7.7 67 19-86 43-114 (309)
322 PRK00481 NAD-dependent deacety 23.9 2.1E+02 0.0046 24.6 5.8 69 107-196 169-238 (242)
323 TIGR02076 pyrH_arch uridylate 23.9 1E+02 0.0023 26.0 3.7 36 25-60 5-43 (221)
324 PRK03501 ppnK inorganic polyph 23.9 3.9E+02 0.0084 23.7 7.5 56 20-81 3-70 (264)
325 PF06506 PrpR_N: Propionate ca 23.8 4E+02 0.0086 21.6 7.4 66 10-81 68-149 (176)
326 PF02875 Mur_ligase_C: Mur lig 23.8 1.8E+02 0.004 20.6 4.6 50 9-60 31-82 (91)
327 cd04253 AAK_UMPK-PyrH-Pf AAK_U 23.7 1.1E+02 0.0023 26.0 3.8 36 25-60 6-44 (221)
328 PRK03708 ppnK inorganic polyph 23.7 4E+02 0.0086 23.7 7.5 28 51-81 59-86 (277)
329 PRK07677 short chain dehydroge 23.7 1.3E+02 0.0029 25.1 4.4 30 21-58 3-32 (252)
330 cd03798 GT1_wlbH_like This fam 23.7 3E+02 0.0066 23.0 6.6 73 107-200 270-344 (377)
331 cd00401 AdoHcyase S-adenosyl-L 23.6 2E+02 0.0044 27.3 5.9 69 52-131 204-273 (413)
332 PRK01231 ppnK inorganic polyph 23.6 1.7E+02 0.0038 26.3 5.3 34 115-154 62-95 (295)
333 PRK14106 murD UDP-N-acetylmura 23.5 2.3E+02 0.0051 26.3 6.3 23 146-168 108-130 (450)
334 PLN02871 UDP-sulfoquinovose:DA 23.5 3.8E+02 0.0081 25.0 7.8 75 107-199 323-399 (465)
335 KOG0503 Asparaginase [Amino ac 23.5 1.3E+02 0.0027 28.3 4.3 37 114-153 120-156 (368)
336 cd06300 PBP1_ABC_sugar_binding 23.4 1.6E+02 0.0034 24.7 4.8 18 114-131 59-76 (272)
337 PRK00414 gmhA phosphoheptose i 23.4 3.9E+02 0.0084 22.2 7.1 30 34-63 28-57 (192)
338 PRK09330 cell division protein 23.4 3.9E+02 0.0085 25.2 7.7 73 44-124 92-168 (384)
339 PF04127 DFP: DNA / pantothena 23.4 4.4E+02 0.0095 22.0 8.0 66 52-122 20-89 (185)
340 PLN00222 tubulin gamma chain; 23.3 2.6E+02 0.0057 26.8 6.7 36 50-85 133-175 (454)
341 cd01411 SIR2H SIR2H: Uncharact 23.0 1E+02 0.0022 26.4 3.6 44 107-154 163-206 (225)
342 PLN02178 cinnamyl-alcohol dehy 22.9 5.8E+02 0.013 23.2 9.4 31 52-84 181-211 (375)
343 TIGR01832 kduD 2-deoxy-D-gluco 22.9 1.4E+02 0.003 24.8 4.3 31 20-58 6-36 (248)
344 PRK06194 hypothetical protein; 22.9 3.9E+02 0.0084 22.7 7.2 31 20-58 7-37 (287)
345 PRK05717 oxidoreductase; Valid 22.9 1.4E+02 0.003 25.0 4.3 37 11-55 2-38 (255)
346 PRK07102 short chain dehydroge 22.8 1.3E+02 0.0028 24.9 4.1 30 20-57 2-31 (243)
347 COG0150 PurM Phosphoribosylami 22.8 5.6E+02 0.012 23.9 8.4 94 38-134 114-222 (345)
348 cd03823 GT1_ExpE7_like This fa 22.7 4.6E+02 0.01 22.0 7.6 72 107-199 254-328 (359)
349 PRK07478 short chain dehydroge 22.7 4.3E+02 0.0092 21.9 7.3 56 18-81 5-60 (254)
350 PRK05854 short chain dehydroge 22.7 1.3E+02 0.0029 26.5 4.3 20 40-59 27-46 (313)
351 TIGR02467 CbiE precorrin-6y C5 22.6 4.4E+02 0.0096 21.7 9.1 113 38-153 55-175 (204)
352 PRK06924 short chain dehydroge 22.6 1.4E+02 0.0031 24.7 4.3 29 19-55 1-29 (251)
353 PF13407 Peripla_BP_4: Peripla 22.6 1.5E+02 0.0032 24.6 4.4 39 111-154 51-89 (257)
354 cd03800 GT1_Sucrose_synthase T 22.5 3.4E+02 0.0074 23.7 6.9 70 109-199 296-367 (398)
355 PF00710 Asparaginase: Asparag 22.5 2.1E+02 0.0046 25.8 5.6 37 114-152 71-107 (313)
356 KOG1207 Diacetyl reductase/L-x 22.5 1.1E+02 0.0024 26.3 3.5 30 52-82 9-38 (245)
357 PRK12361 hypothetical protein; 22.5 1E+02 0.0022 29.9 3.8 28 119-151 300-327 (547)
358 PF13580 SIS_2: SIS domain; PD 22.4 2.5E+02 0.0054 21.8 5.4 43 40-82 92-137 (138)
359 TIGR01127 ilvA_1Cterm threonin 22.4 4.2E+02 0.0091 24.2 7.7 21 117-137 307-327 (380)
360 PRK07524 hypothetical protein; 22.4 4.9E+02 0.011 24.9 8.5 81 38-128 189-276 (535)
361 TIGR00147 lipid kinase, YegS/R 22.4 2.7E+02 0.0059 24.2 6.2 33 116-153 58-91 (293)
362 PRK05429 gamma-glutamyl kinase 22.3 1E+02 0.0022 28.6 3.6 41 18-59 7-56 (372)
363 PRK07035 short chain dehydroge 22.3 1.4E+02 0.003 24.9 4.2 31 20-58 9-39 (252)
364 PF03975 CheD: CheD chemotacti 22.2 3.6E+02 0.0078 20.5 6.4 45 14-58 34-87 (114)
365 PRK09496 trkA potassium transp 22.2 3E+02 0.0066 25.4 6.8 90 35-126 216-308 (453)
366 PF03486 HI0933_like: HI0933-l 22.2 65 0.0014 30.4 2.3 27 53-81 3-29 (409)
367 PRK08213 gluconate 5-dehydroge 22.2 3.8E+02 0.0082 22.3 6.9 42 10-59 3-44 (259)
368 PRK01911 ppnK inorganic polyph 22.0 4.6E+02 0.0099 23.6 7.6 57 20-81 1-94 (292)
369 PRK15494 era GTPase Era; Provi 21.9 6E+02 0.013 23.0 9.5 85 113-201 129-218 (339)
370 PRK09426 methylmalonyl-CoA mut 21.9 4.8E+02 0.01 26.7 8.5 45 36-81 595-639 (714)
371 COG1402 Uncharacterized protei 21.9 1.7E+02 0.0036 26.0 4.7 45 32-76 84-132 (250)
372 PRK10834 vancomycin high tempe 21.9 3.1E+02 0.0068 24.1 6.4 9 116-124 45-53 (239)
373 cd05212 NAD_bind_m-THF_DH_Cycl 21.9 4.1E+02 0.009 21.1 9.1 104 17-133 26-130 (140)
374 PRK07116 flavodoxin; Provision 21.8 4.1E+02 0.0089 21.1 8.0 80 113-196 74-157 (160)
375 KOG4435 Predicted lipid kinase 21.8 6E+02 0.013 24.6 8.4 32 119-152 119-150 (535)
376 COG0703 AroK Shikimate kinase 21.7 2.8E+02 0.006 23.2 5.7 62 116-194 72-133 (172)
377 PLN02448 UDP-glycosyltransfera 21.6 6.7E+02 0.015 23.7 9.1 75 112-199 336-414 (459)
378 COG2242 CobL Precorrin-6B meth 21.6 1.3E+02 0.0028 25.6 3.7 123 40-172 24-153 (187)
379 PLN02562 UDP-glycosyltransfera 21.6 7E+02 0.015 23.6 9.9 39 112-161 341-380 (448)
380 PRK06180 short chain dehydroge 21.4 1.5E+02 0.0032 25.4 4.2 33 19-59 4-36 (277)
381 COG0159 TrpA Tryptophan syntha 21.4 4.9E+02 0.011 23.3 7.5 63 124-196 74-141 (265)
382 KOG2585 Uncharacterized conser 21.3 1.5E+02 0.0032 28.6 4.5 30 21-55 268-297 (453)
383 TIGR03282 methan_mark_13 putat 21.3 3.6E+02 0.0077 25.3 6.8 32 52-84 53-84 (352)
384 PRK12686 carbamate kinase; Rev 21.2 1.5E+02 0.0033 27.1 4.5 40 21-60 4-53 (312)
385 PF00464 SHMT: Serine hydroxym 21.2 58 0.0012 30.8 1.7 48 38-85 307-366 (399)
386 PRK04155 chaperone protein Hch 21.2 93 0.002 28.0 3.0 36 116-151 146-186 (287)
387 cd08189 Fe-ADH5 Iron-containin 21.2 4.9E+02 0.011 23.8 7.9 14 113-126 81-94 (374)
388 PF00890 FAD_binding_2: FAD bi 21.1 91 0.002 28.5 3.0 28 53-82 2-29 (417)
389 cd08181 PPD-like 1,3-propanedi 21.1 4.4E+02 0.0096 24.0 7.5 13 114-126 82-94 (357)
390 cd08193 HVD 5-hydroxyvalerate 21.0 2.3E+02 0.0049 26.0 5.6 13 114-126 82-94 (376)
391 cd06059 Tubulin The tubulin su 20.9 5.1E+02 0.011 23.9 8.0 53 34-86 69-133 (382)
392 cd04246 AAK_AK-DapG-like AAK_A 20.9 2.4E+02 0.0051 24.1 5.4 34 25-59 6-41 (239)
393 PF00205 TPP_enzyme_M: Thiamin 20.9 3.8E+02 0.0083 20.4 6.9 129 42-194 3-137 (137)
394 cd01983 Fer4_NifH The Fer4_Nif 20.7 2.6E+02 0.0056 18.8 4.8 21 38-58 14-34 (99)
395 PRK12314 gamma-glutamyl kinase 20.7 1.5E+02 0.0033 26.1 4.2 40 19-59 9-58 (266)
396 PRK08339 short chain dehydroge 20.7 1.6E+02 0.0035 25.0 4.4 31 20-58 9-39 (263)
397 PF01182 Glucosamine_iso: Gluc 20.7 4E+02 0.0087 22.1 6.7 86 112-198 17-111 (199)
398 cd03816 GT1_ALG1_like This fam 20.6 6E+02 0.013 23.3 8.4 71 106-197 305-378 (415)
399 PRK12367 short chain dehydroge 20.6 1.6E+02 0.0034 25.2 4.2 29 52-81 16-44 (245)
400 TIGR02991 ectoine_eutB ectoine 20.5 2E+02 0.0044 25.8 5.1 42 42-84 156-203 (317)
401 PRK07998 gatY putative fructos 20.4 6.4E+02 0.014 22.7 10.7 36 106-143 188-223 (283)
402 PRK07152 nadD putative nicotin 20.4 1.4E+02 0.003 27.2 4.1 29 21-49 2-30 (342)
403 PRK08177 short chain dehydroge 20.4 1.6E+02 0.0035 24.2 4.2 31 20-58 2-32 (225)
404 PRK06457 pyruvate dehydrogenas 20.4 6.7E+02 0.015 24.2 9.0 85 39-127 184-271 (549)
405 PF13580 SIS_2: SIS domain; PD 20.4 2.6E+02 0.0056 21.7 5.1 42 34-77 19-60 (138)
406 PLN02740 Alcohol dehydrogenase 20.2 2.8E+02 0.006 25.2 6.0 83 51-136 200-289 (381)
407 PRK11921 metallo-beta-lactamas 20.2 6.9E+02 0.015 23.0 14.1 59 114-172 299-361 (394)
408 PRK03372 ppnK inorganic polyph 20.1 2.5E+02 0.0054 25.5 5.6 38 17-57 3-40 (306)
409 PTZ00005 phosphoglycerate kina 20.1 2.2E+02 0.0048 27.2 5.4 62 5-80 190-254 (417)
410 PF02502 LacAB_rpiB: Ribose/Ga 20.1 3E+02 0.0064 22.1 5.4 54 14-69 20-76 (140)
411 PRK14489 putative bifunctional 20.1 2.5E+02 0.0054 25.9 5.6 18 181-198 347-364 (366)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=2e-54 Score=361.87 Aligned_cols=178 Identities=46% Similarity=0.855 Sum_probs=170.4
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEV 99 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~ 99 (225)
++|||||||+.++++.|++.|++||++||++|++||||||..|+|+|+++||+++||+|+||+|..+..++.+++.+++.
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 48999999999999999999999999999999999999996699999999999999999999999887677777788888
Q ss_pred eecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccC
Q 027287 100 KPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARH 179 (225)
Q Consensus 100 ~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~ 179 (225)
+++++|++||.+|++.||+||++|||+|||+|++++|+|.|+|+|+||++++|.+|||+++++|+++++++||++++..+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCHHHHHHHHHhh
Q 027287 180 IIVSAPNAKELMNKMEEY 197 (225)
Q Consensus 180 ~i~~~~d~ee~~~~l~~~ 197 (225)
.+++++|++|++++|+++
T Consensus 161 ~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQNY 178 (178)
T ss_pred cEEEcCCHHHHHHHHHhC
Confidence 999999999999999763
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=4.1e-44 Score=305.56 Aligned_cols=184 Identities=36% Similarity=0.676 Sum_probs=168.7
Q ss_pred cCCcceEEEEeCCCCCCChH-HHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCC
Q 027287 16 QSKFNRICVFCGSSAGKKST-YKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGE 94 (225)
Q Consensus 16 ~~~~~~V~Vfggs~~~~~~~-~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~ 94 (225)
...+++|||||||+.+.++. |++.|++||+.||++|+.|++|||+ |+|+|+++||.++||.||||+|......+..+.
T Consensus 11 ~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~ 89 (205)
T COG1611 11 FIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEPPNY 89 (205)
T ss_pred ccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhccCcc
Confidence 44678999999999877666 9999999999999999888888885 999999999999999999999988765553344
Q ss_pred CCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCC--CCcEEEEeCCCCchHHHHHHH-HHHHcC
Q 027287 95 TVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIH--DKPVGLLNVDGYYNSLLTFID-KAVEEG 171 (225)
Q Consensus 95 ~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~--~kPiill~~~g~w~~l~~~l~-~~~~~g 171 (225)
..+++++..+|++||.+|+++|||||++|||+||++|++++|+|.|++.| .+|.++++..+||+++.++++ +++.++
T Consensus 90 ~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~ 169 (205)
T COG1611 90 EVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVEG 169 (205)
T ss_pred ccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHhh
Confidence 45778899999999999999999999999999999999999999999988 888889999999999999998 899999
Q ss_pred CCCccccCcEEEcCCHHHHHHHHHhhcCC
Q 027287 172 FISPNARHIIVSAPNAKELMNKMEEYFPQ 200 (225)
Q Consensus 172 fi~~~~~~~i~~~~d~ee~~~~l~~~~~~ 200 (225)
++++...+++++++|++++++.+.++.++
T Consensus 170 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 170 LISEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred cCChhhhhheeeecCHHHHHHHHHHhccc
Confidence 99999999999999999999999998765
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=1.9e-41 Score=278.88 Aligned_cols=157 Identities=25% Similarity=0.413 Sum_probs=134.5
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCce
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGE 98 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~ 98 (225)
|++|||||||+ .++.|++.|++||++||++|++|||||+. |+|++++++|+++||+||||+|..+. ..+++.+
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 57899999988 37899999999999999999999998885 99999999999999999999998763 2334444
Q ss_pred EeecCCH-HHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccc
Q 027287 99 VKPVADM-HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNA 177 (225)
Q Consensus 99 ~~~~~~m-~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~ 177 (225)
+.+.+++ ++||++|+++|||||++|||+|||+|++++|+ ++|||+++|.+|||+++++++ +.+.+|++ +
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~- 143 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E- 143 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH--Hhcccccc-c-
Confidence 5444554 88999999999999999999999999999997 689999999999999998864 34444444 3
Q ss_pred cCcEEEcCCHHHHHHHH
Q 027287 178 RHIIVSAPNAKELMNKM 194 (225)
Q Consensus 178 ~~~i~~~~d~ee~~~~l 194 (225)
.+.+++|++|+++++
T Consensus 144 --~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 144 --RVIVEITPAEAVKLA 158 (159)
T ss_pred --eeEecCCHHHHHHhh
Confidence 699999999999875
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=1.7e-38 Score=253.96 Aligned_cols=131 Identities=45% Similarity=0.786 Sum_probs=124.4
Q ss_pred HHHHHHHHHhcCCeEEEEeCCcccc-CCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhC
Q 027287 64 MGLISQAVYDGGRHVIGVIPKTLMP-REITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLG 142 (225)
Q Consensus 64 M~a~a~gA~~aGG~viGIiP~~~~~-~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg 142 (225)
|+|+++||+++||+|+||+|....+ ++.+++.+++++.+++|++||.+|+++||+||++|||+|||+|++++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999998888 666777788899999999999999999999999999999999999999999999
Q ss_pred CCCC-cEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHH
Q 027287 143 IHDK-PVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKM 194 (225)
Q Consensus 143 ~~~k-Piill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l 194 (225)
.++| ||+|+|.+|||+++++|+++++++||++++..+.+++++|++|++++|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 8877 999999999999999999999999999999999999999999999976
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.66 E-value=6.1e-15 Score=127.31 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=115.5
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccc---cCCC-----
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLM---PREI----- 91 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~---~~e~----- 91 (225)
+.|+|. |||.. .+...+.|+++++.|+++|++||+|++. |++.+++++|+++||.+|+|+|..+. |.+.
T Consensus 45 ~~iaIv-GsR~~-s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIV-GTRRP-TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEE-cCCCC-CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 689999 56765 4556788999999999999999999996 99999999999999999999997642 2210
Q ss_pred --CCCC---Cce-----EeecCCHHHHHHHHHhhCCEEEEecCC--cccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchH
Q 027287 92 --TGET---VGE-----VKPVADMHQRKAEMAKHSDAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 159 (225)
Q Consensus 92 --~~~~---~~~-----~~~~~~m~~Rk~~mv~~sDa~IvlpGG--~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~ 159 (225)
..+. +++ ......|..||+++...||++||+..+ .||+..+-.++. .+|||+.+-+ ..+++
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~------~gr~v~~~pg-~~~~~ 194 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALE------QGREVFAYPG-DLNSP 194 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHH------hCCcEEEEcC-CCCCc
Confidence 0001 011 112346789999999999999999986 799999988873 4799999854 34554
Q ss_pred HHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHH
Q 027287 160 LLTFIDKAVEEGFISPNARHIIVSAPNAKELMNK 193 (225)
Q Consensus 160 l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~ 193 (225)
..+--..++++|. ..+.+++|+++.
T Consensus 195 ~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 195 ESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred cchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 4444455666662 345678887764
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.36 E-value=1.1e-11 Score=106.44 Aligned_cols=144 Identities=22% Similarity=0.226 Sum_probs=87.7
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCcc---ccCCC---
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTL---MPREI--- 91 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~---~~~e~--- 91 (225)
..+.|+|. |||.. ++...+.|+++++.|+++|++||+|+.. |+..+++++|+++||.+|+|+|..+ +|.+.
T Consensus 43 ~~~~iaIv-GsR~~-s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l 119 (212)
T PF02481_consen 43 KQPSIAIV-GSRNP-SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENREL 119 (212)
T ss_dssp GS-EEEEE---SS---HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHH
T ss_pred cCceEEEE-cCCCC-CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHH
Confidence 36789999 57765 5677889999999999999999999996 9999999999999999999998765 23221
Q ss_pred ----C-CCCC-------ceEeecCCHHHHHHHHHhhCCEEEEecC--CcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCc
Q 027287 92 ----T-GETV-------GEVKPVADMHQRKAEMAKHSDAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 157 (225)
Q Consensus 92 ----~-~~~~-------~~~~~~~~m~~Rk~~mv~~sDa~IvlpG--G~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w 157 (225)
. .+.+ ..-.....|..|++++...||++||+.- ..||+.-+-.++. .+|||+++.. ..+
T Consensus 120 ~~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~------~gr~v~~vp~-~~~ 192 (212)
T PF02481_consen 120 AERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALE------QGRPVFAVPG-PID 192 (212)
T ss_dssp HHHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHH------HT--EEE-----TT
T ss_pred HHHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHH------cCCeEEEEeC-CCC
Confidence 0 1110 1112234667999999999999999974 5799988887773 3699999743 366
Q ss_pred hHHHHHHHHHHHcC
Q 027287 158 NSLLTFIDKAVEEG 171 (225)
Q Consensus 158 ~~l~~~l~~~~~~g 171 (225)
++....-..++++|
T Consensus 193 ~~~~~G~~~Li~~G 206 (212)
T PF02481_consen 193 DPNSEGNNELIKEG 206 (212)
T ss_dssp -GGGHHHHHHHHTT
T ss_pred CcccHHHHHHHHcC
Confidence 65555556677776
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.31 E-value=9.6e-11 Score=108.31 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=117.8
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCcc---ccCCC----
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTL---MPREI---- 91 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~---~~~e~---- 91 (225)
.+.|+|+ |||.. .+.-.+.++++++.||++|++||+|+.. |+..+++++|+++||.+|+|++.-+ +|.+.
T Consensus 107 ~~~iaiV-GsR~~-s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~ 183 (374)
T PRK10736 107 SPQLAVV-GSRAH-SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLA 183 (374)
T ss_pred CCeEEEE-CCCCC-CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHH
Confidence 3579999 57765 4666788999999999999999999986 9999999999999999999987644 33220
Q ss_pred ----CCCCC--ce-----EeecCCHHHHHHHHHhhCCEEEEecC--CcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCch
Q 027287 92 ----TGETV--GE-----VKPVADMHQRKAEMAKHSDAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN 158 (225)
Q Consensus 92 ----~~~~~--~~-----~~~~~~m~~Rk~~mv~~sDa~IvlpG--G~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~ 158 (225)
..+.. ++ -.....|..||+++...|+++||+-- ..|||.=+-.++. .+|+|+.+-+ ...+
T Consensus 184 ~~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~------~gR~VfavPG-~i~~ 256 (374)
T PRK10736 184 ESIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALE------QGRDVFALPG-PIGN 256 (374)
T ss_pred HHHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHH------hCCeEEEEcC-CCCC
Confidence 00100 11 11235778999999999999999975 4799887766663 5899999843 3455
Q ss_pred HHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 027287 159 SLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEE 196 (225)
Q Consensus 159 ~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 196 (225)
+.-.--.++.++|. ..+.+++|+++.+..
T Consensus 257 ~~s~G~n~LI~~GA---------~lv~~~~Di~~~l~~ 285 (374)
T PRK10736 257 PGSEGPHWLIKQGA---------YLVTSPEDILENLQF 285 (374)
T ss_pred ccchhHHHHHHCCC---------EEeCCHHHHHHHhhh
Confidence 44444455666663 467889999998853
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.14 E-value=1.8e-09 Score=99.01 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=113.2
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCcc---ccCCC-----
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTL---MPREI----- 91 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~---~~~e~----- 91 (225)
+.|+|. |||..+ ..-.+.+++|++.|+++|++||+|+.. |+..+++++|+++||++|+|+...+ +|++.
T Consensus 112 ~~vaIV-GsR~~S-~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIV-GSRKPS-KYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEE-eCCCCC-HhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 689999 577764 556788999999999999999999996 9999999999999999999987644 33221
Q ss_pred --CCCC-------CceEeecCCHHHHHHHHHhhCCEEEEecCC--cccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHH
Q 027287 92 --TGET-------VGEVKPVADMHQRKAEMAKHSDAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSL 160 (225)
Q Consensus 92 --~~~~-------~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG--~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l 160 (225)
..+. ...-....+|..||+++..+|+++||+-.+ +|+|.=.-.++. .++.|+.+-++ ..++-
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Ale------qgR~VfavPg~-~~~~~ 261 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALE------QGRDVFAVPGS-IDNPR 261 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHH------cCCeeEEcCCC-ccccc
Confidence 0111 011223457899999999999999999876 699987776664 47888877542 32322
Q ss_pred HHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhhc
Q 027287 161 LTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYF 198 (225)
Q Consensus 161 ~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~~ 198 (225)
..=-.+++++|- ..+.+.+++++.+....
T Consensus 262 s~G~~~LI~~GA---------~lv~~~~dil~~l~~~~ 290 (350)
T COG0758 262 SEGCNKLIKEGA---------KLVTSAEDILEELNALL 290 (350)
T ss_pred ccchHHHHHccc---------hhcccHHHHHHHhhhhc
Confidence 121233556662 23556677776665543
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=96.94 E-value=0.0092 Score=48.54 Aligned_cols=93 Identities=20% Similarity=0.203 Sum_probs=52.3
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCC-CCCCCCc-eEeecCCHHHHHHHHHhhCCEEEEecCCc---cc
Q 027287 54 LVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPRE-ITGETVG-EVKPVADMHQRKAEMAKHSDAFIALPGGY---GT 128 (225)
Q Consensus 54 lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e-~~~~~~~-~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~---GT 128 (225)
||+||- +|+..|+-+.|+++|-..=|-.|.-....+ ..+..|. ......+...|.+..++-||+.++|-=|. ||
T Consensus 1 IiSGGQ-TGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQ-TGVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE-----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCcc-ccHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 689987 599999999999999988888886543222 1122221 22234778999999999999977775432 56
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeC
Q 027287 129 LEELLEVITWAQLGIHDKPVGLLNV 153 (225)
Q Consensus 129 L~Ei~~a~~~~qlg~~~kPiill~~ 153 (225)
..=+..+. .|.||+.+++.
T Consensus 80 ~lT~~~a~------~~~KP~l~i~~ 98 (145)
T PF12694_consen 80 ALTVEFAR------KHGKPCLHIDL 98 (145)
T ss_dssp HHHHHHHH------HTT--EEEETS
T ss_pred HHHHHHHH------HhCCCEEEEec
Confidence 33332222 47899998854
No 10
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.18 E-value=0.24 Score=52.53 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=92.1
Q ss_pred ceEEEEeCCCCCC-ChHHHHHHHH-HHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCC-----eE--EEEeCCccccC-
Q 027287 20 NRICVFCGSSAGK-KSTYKDAAIE-LGKELVARNIDLVYGGGSVGLMGLISQAVYDGGR-----HV--IGVIPKTLMPR- 89 (225)
Q Consensus 20 ~~V~Vfggs~~~~-~~~~~~~A~~-lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG-----~v--iGIiP~~~~~~- 89 (225)
-.|.|-||...-. .|.+.+.-++ |-+..-..|.=|+|||-..|+|.-+..++++++- ++ |||-|-....+
T Consensus 119 LvISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~nr 198 (1381)
T KOG3614|consen 119 LVISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVKNR 198 (1381)
T ss_pred EEEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeeech
Confidence 4699998877644 5666554444 4444444799999999999999999999998642 33 66655322110
Q ss_pred C---------------CCCC-------CCceEeecC---------CHHHHHHH--HHh----hC----C---EEEEecCC
Q 027287 90 E---------------ITGE-------TVGEVKPVA---------DMHQRKAE--MAK----HS----D---AFIALPGG 125 (225)
Q Consensus 90 e---------------~~~~-------~~~~~~~~~---------~m~~Rk~~--mv~----~s----D---a~IvlpGG 125 (225)
+ .+.+ ..+..+.++ ...-|+++ -+. .+ + +.+++.||
T Consensus 199 ~~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eGg 278 (1381)
T KOG3614|consen 199 DDLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEGG 278 (1381)
T ss_pred hhhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecCC
Confidence 0 0001 111111111 11223221 110 11 2 57888999
Q ss_pred cccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHH-HcCCCCcc
Q 027287 126 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAV-EEGFISPN 176 (225)
Q Consensus 126 ~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~-~~gfi~~~ 176 (225)
.+|+.=+.+..+ ...+.|++++.+.|=-.++++++-+-. ..|.++..
T Consensus 279 ~nti~~I~~~v~----~~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~ 326 (1381)
T KOG3614|consen 279 PNTLAIILDYVT----DKPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDA 326 (1381)
T ss_pred chHHHHHHHHhc----cCCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHH
Confidence 999998876663 123569999999998889988875433 44554433
No 11
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=94.89 E-value=1.1 Score=37.68 Aligned_cols=129 Identities=20% Similarity=0.252 Sum_probs=61.0
Q ss_pred cceEEEEeCCCCC-------CChHHHHHHHHHHHH---HHhCCCeEE-EcCCCccHHHHHHHHHHhcC-----CeEEEEe
Q 027287 19 FNRICVFCGSSAG-------KKSTYKDAAIELGKE---LVARNIDLV-YGGGSVGLMGLISQAVYDGG-----RHVIGVI 82 (225)
Q Consensus 19 ~~~V~Vfggs~~~-------~~~~~~~~A~~lG~~---LA~~G~~lv-~GGg~~GlM~a~a~gA~~aG-----G~viGIi 82 (225)
|+++||- |.|+- .+|.+...-..|-+. |-++|++-+ +||. -|+.--++..+++.. -+.+-++
T Consensus 1 M~~~~~T-GyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~Gga-lG~D~waae~vl~LK~~yp~ikL~~v~ 78 (177)
T PF06908_consen 1 MKRCCFT-GYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGA-LGVDLWAAEVVLELKKEYPEIKLALVL 78 (177)
T ss_dssp --EEEEE-E--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE----TTHHHHHHHHHHTTTTT-TT-EEEEEE
T ss_pred CeEEEEE-ecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCc-ccHHHHHHHHHHHHHhhhhheEEEEEE
Confidence 3456665 34533 356554444444443 334687655 6666 599999999999864 3556667
Q ss_pred CCccccCCCCCC----------CCceEeec--------CCHHHHHHHHHhhCCEEEEec-----CCcccHHHHHHHHHHH
Q 027287 83 PKTLMPREITGE----------TVGEVKPV--------ADMHQRKAEMAKHSDAFIALP-----GGYGTLEELLEVITWA 139 (225)
Q Consensus 83 P~~~~~~e~~~~----------~~~~~~~~--------~~m~~Rk~~mv~~sDa~Ivlp-----GG~GTL~Ei~~a~~~~ 139 (225)
|-.........+ ..+.++.. .-|..|++.|+++||.+|++= ||....-+......
T Consensus 79 Pf~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~-- 156 (177)
T PF06908_consen 79 PFENQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQ-- 156 (177)
T ss_dssp SSB-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHH--
T ss_pred cccchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHh--
Confidence 754332211100 01112222 234699999999999888873 33333223222221
Q ss_pred HhCCCCCcEEEEeC
Q 027287 140 QLGIHDKPVGLLNV 153 (225)
Q Consensus 140 qlg~~~kPiill~~ 153 (225)
..++.||.+++.
T Consensus 157 --~~~~y~i~~I~~ 168 (177)
T PF06908_consen 157 --EQKGYPIDLIDP 168 (177)
T ss_dssp --HHH---EEEE-H
T ss_pred --hccCCeEEEecH
Confidence 124678888853
No 12
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=94.86 E-value=0.08 Score=40.49 Aligned_cols=46 Identities=35% Similarity=0.337 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhhCCEEEEecCC----cccHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027287 103 ADMHQRKAEMAKHSDAFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLLNVD 154 (225)
Q Consensus 103 ~~m~~Rk~~mv~~sDa~IvlpGG----~GTL~Ei~~a~~~~qlg~~~kPiill~~~ 154 (225)
....+|....++.||++|+.-.+ .||.-|+-.++. .+|||+++..+
T Consensus 49 ~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~a------lgkpv~~~~~d 98 (113)
T PF05014_consen 49 REIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYA------LGKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHH------TTSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHH------CCCEEEEEEcC
Confidence 34478888899999988887665 899999998885 47999998754
No 13
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=93.97 E-value=1.2 Score=39.20 Aligned_cols=124 Identities=24% Similarity=0.255 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCccHHHHHHHHHHhcCC-eEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEecCCccc
Q 027287 50 RNIDLVYGGGSVGLMGLISQAVYDGGR-HVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGT 128 (225)
Q Consensus 50 ~G~~lv~GGg~~GlM~a~a~gA~~aGG-~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GT 128 (225)
.++.+||=||. |.- .+.+.+.+..+ .++-+-+....+ ....+ .+.-.. ...-.-.+..||++|-- ||++|
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~~~~---~~~ni-~~~~~~--~~~~~~~m~~ad~vIs~-~G~~t 262 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNAADP---RPGNI-HVRPFS--TPDFAELMAAADLVISK-GGYTT 262 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCcccc---cCCCE-EEeecC--hHHHHHHHHhCCEEEEC-CCHHH
Confidence 56777776663 555 55565555553 333332222111 11111 122111 12223345888987766 88999
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 027287 129 LEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEE 196 (225)
Q Consensus 129 L~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 196 (225)
+.|+. ..+||++++-..+++++... .+.+.+.|....-.. -.-+++.+.++|++
T Consensus 263 ~~Ea~---------~~g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~~~~~~----~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 263 ISEAL---------ALGKPALVIPRPGQDEQEYN-ARKLEELGLGIVLSQ----EDLTPERLAEFLER 316 (318)
T ss_pred HHHHH---------HcCCCEEEEeCCCCchHHHH-HHHHHHCCCeEEccc----ccCCHHHHHHHHhc
Confidence 99886 24799999977677776644 244555554321100 01167777777765
No 14
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=93.84 E-value=3.3 Score=36.57 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcC--CHH
Q 027287 111 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP--NAK 188 (225)
Q Consensus 111 ~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~--d~e 188 (225)
-++..||++|. ++|..|+-|.. ..++|+|..+..+.-.......+.+.+. ....++-.. +++
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~Ea~---------~~g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~~ 309 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAELA---------AAGVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLPE 309 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHHHH---------HcCCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCHH
Confidence 46688999886 45555666654 2589999976533211111100112111 122233333 489
Q ss_pred HHHHHHHhhcC
Q 027287 189 ELMNKMEEYFP 199 (225)
Q Consensus 189 e~~~~l~~~~~ 199 (225)
++.+.|.+...
T Consensus 310 ~l~~~i~~ll~ 320 (348)
T TIGR01133 310 KLLEALLKLLL 320 (348)
T ss_pred HHHHHHHHHHc
Confidence 88888887664
No 15
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=92.79 E-value=3.3 Score=33.42 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=49.9
Q ss_pred HHHHHHHHhhCCEEEEecCC-cccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEc
Q 027287 106 HQRKAEMAKHSDAFIALPGG-YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSA 184 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~IvlpGG-~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 184 (225)
.-|.+.+++.||.+||.-|- +=--+-.|.+=.-.. .+||+|++-....--+|.+. + .....++
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~A---lgKplI~lh~~~~~HpLKEv-d------------a~A~a~~ 126 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAA---LGKPLITLHPEELHHPLKEV-D------------AAALAVA 126 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH---cCCCeEEecchhccccHHHH-h------------HhhHhhh
Confidence 57889999999999998873 333333333322222 46999999877666666653 1 1123568
Q ss_pred CCHHHHHHHHH
Q 027287 185 PNAKELMNKME 195 (225)
Q Consensus 185 ~d~ee~~~~l~ 195 (225)
++|+++++.|+
T Consensus 127 et~~Qvv~iL~ 137 (141)
T PF11071_consen 127 ETPEQVVEILR 137 (141)
T ss_pred CCHHHHHHHHH
Confidence 99999999885
No 16
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=92.75 E-value=1.3 Score=31.67 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=45.0
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHhC-CCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCc
Q 027287 23 CVFCGSSAGKKSTYKDAAIELGKELVAR-NIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKT 85 (225)
Q Consensus 23 ~Vfggs~~~~~~~~~~~A~~lG~~LA~~-G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~ 85 (225)
.+|+|++.-+|-. ..-..|-+.+++. ...||+||.+.|+...+.+=|.+.|-.++-+-|+.
T Consensus 6 Vli~GgR~~~D~~--~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~adW 67 (71)
T PF10686_consen 6 VLITGGRDWTDHE--LIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPADW 67 (71)
T ss_pred EEEEECCccccHH--HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcCh
Confidence 3455777765443 3445677777774 67788999956999999999999988888775553
No 17
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=92.57 E-value=2.3 Score=38.68 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=42.5
Q ss_pred HHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 027287 111 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKEL 190 (225)
Q Consensus 111 ~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~ 190 (225)
.++..||+|| -.||.||+.|.. .+++|++++-. +.|+. .+.+.+.+.|.-..-.... -+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal---------~~GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~l~~~~----~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAAL---------RAGVPQLVVPF--FGDQP-FWAARVAELGAGPALDPRE----LTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHH---------HcCCCEEeeCC--CCCcH-HHHHHHHHCCCCCCCCccc----CCHHHH
Confidence 3457788887 677899998886 26899999842 23322 3345566656322111111 257777
Q ss_pred HHHHHhhcC
Q 027287 191 MNKMEEYFP 199 (225)
Q Consensus 191 ~~~l~~~~~ 199 (225)
.+.+++...
T Consensus 363 ~~al~~~l~ 371 (401)
T cd03784 363 AAALRRLLD 371 (401)
T ss_pred HHHHHHHhC
Confidence 766666543
No 18
>PRK10565 putative carbohydrate kinase; Provisional
Probab=91.30 E-value=0.88 Score=44.10 Aligned_cols=127 Identities=20% Similarity=0.179 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCccHHHHH---HHHHHhcC-CeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEecCC
Q 027287 50 RNIDLVYGGGSVGLMGLI---SQAVYDGG-RHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGG 125 (225)
Q Consensus 50 ~G~~lv~GGg~~GlM~a~---a~gA~~aG-G~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG 125 (225)
+|+.+|.||.. +-++|+ +++|+.+| |.|.-+.|....+. .....-++++...-.+.-.-++..+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~~--~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIAP--LLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHHH--HhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 69999999965 666665 66777776 56655556542110 011112333322111112223467899887776
Q ss_pred cccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHH
Q 027287 126 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKME 195 (225)
Q Consensus 126 ~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~ 195 (225)
.|+-++...++.. +...++|+| |+.++ +.++.. ... . ....+++.++.|+.+.+.
T Consensus 330 lg~~~~~~~~~~~--~~~~~~P~V-LDAda-----L~ll~~---~~~-~---~~~~VLTPh~gE~~rL~~ 384 (508)
T PRK10565 330 LGQQEWGKKALQK--VENFRKPML-WDADA-----LNLLAI---NPD-K---RHNRVITPHPGEAARLLG 384 (508)
T ss_pred CCCCHHHHHHHHH--HHhcCCCEE-EEchH-----HHHHhh---Ccc-c---cCCeEECCCHHHHHHHhC
Confidence 6665554443322 223568875 57766 222221 100 0 113567777777776653
No 19
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=91.26 E-value=6.8 Score=31.67 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=49.7
Q ss_pred HHHHHHHHhhCCEEEEecC-CcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEc
Q 027287 106 HQRKAEMAKHSDAFIALPG-GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSA 184 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~IvlpG-G~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 184 (225)
.-|-+.+++.||.+||.-| -+=--+-.|.+=.-.. .+||+|++.....--+|.+. +. ....++
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aaA---lgKplI~lh~~~~~HpLKEv-da------------aA~ava 129 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAAA---LGKPLIILRPEELIHPLKEV-DN------------KAQAVV 129 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH---cCCCeEEecchhccccHHHH-hH------------HHHHHh
Confidence 5788889999999999877 3333343443332222 46999999877666666553 11 123468
Q ss_pred CCHHHHHHHHH
Q 027287 185 PNAKELMNKME 195 (225)
Q Consensus 185 ~d~ee~~~~l~ 195 (225)
++|+++++.|+
T Consensus 130 etp~Qvv~iL~ 140 (144)
T TIGR03646 130 ETPEQAIETLK 140 (144)
T ss_pred cCHHHHHHHHH
Confidence 89999999885
No 20
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=91.11 E-value=11 Score=34.16 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=53.2
Q ss_pred HHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccC--c-----EEEc
Q 027287 112 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARH--I-----IVSA 184 (225)
Q Consensus 112 mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~--~-----i~~~ 184 (225)
++..||+|||-+-.+-=+.|.. + .++||.++...+--+.+..+++.|.+.|.+..-... . +.-.
T Consensus 225 ~La~ad~i~VT~DSvSMvsEA~---~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~pl 295 (311)
T PF06258_consen 225 FLAAADAIVVTEDSVSMVSEAA---A------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEPL 295 (311)
T ss_pred HHHhCCEEEEcCccHHHHHHHH---H------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCCc
Confidence 6788999999887776666654 2 469999998776556677778889999987655433 1 2334
Q ss_pred CCHHHHHHHHHhh
Q 027287 185 PNAKELMNKMEEY 197 (225)
Q Consensus 185 ~d~ee~~~~l~~~ 197 (225)
++.+.+.+.|.+.
T Consensus 296 ~et~r~A~~i~~r 308 (311)
T PF06258_consen 296 DETDRVAAEIRER 308 (311)
T ss_pred cHHHHHHHHHHHH
Confidence 5555566665543
No 21
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=90.68 E-value=6.1 Score=36.02 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=40.2
Q ss_pred HHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEE-EcCCHHHH
Q 027287 112 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIV-SAPNAKEL 190 (225)
Q Consensus 112 mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~-~~~d~ee~ 190 (225)
++..||++| ..||.||+.|.. .+++|++++-.. .+.. .+.+.+.+.|.-. .+. -.-+++++
T Consensus 288 ll~~~~~~I-~hgG~~t~~Eal---------~~G~P~v~~p~~--~dq~-~~a~~l~~~g~g~-----~l~~~~~~~~~l 349 (392)
T TIGR01426 288 ILKKADAFI-THGGMNSTMEAL---------FNGVPMVAVPQG--ADQP-MTARRIAELGLGR-----HLPPEEVTAEKL 349 (392)
T ss_pred HHhhCCEEE-ECCCchHHHHHH---------HhCCCEEecCCc--ccHH-HHHHHHHHCCCEE-----EeccccCCHHHH
Confidence 457788554 789999998875 258999997432 2222 2334454444211 011 11256777
Q ss_pred HHHHHhhcC
Q 027287 191 MNKMEEYFP 199 (225)
Q Consensus 191 ~~~l~~~~~ 199 (225)
.+.|++...
T Consensus 350 ~~ai~~~l~ 358 (392)
T TIGR01426 350 REAVLAVLS 358 (392)
T ss_pred HHHHHHHhc
Confidence 777776543
No 22
>PRK13660 hypothetical protein; Provisional
Probab=90.16 E-value=7.9 Score=32.68 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCCeE-EEcCCCccHHHHHHHHHHhc-----CCeEEEEeCCccccCCCCC----------CCCceEee---
Q 027287 41 IELGKELVARNIDL-VYGGGSVGLMGLISQAVYDG-----GRHVIGVIPKTLMPREITG----------ETVGEVKP--- 101 (225)
Q Consensus 41 ~~lG~~LA~~G~~l-v~GGg~~GlM~a~a~gA~~a-----GG~viGIiP~~~~~~e~~~----------~~~~~~~~--- 101 (225)
++|-+++. .|+.- ++||. -|+---++.-|++. .-+.+-++|-......... ...+.+..
T Consensus 33 ~~l~~~~e-~G~~wfi~gga-lG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~ 110 (182)
T PRK13660 33 RKLIALLE-EGLEWVIISGQ-LGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISK 110 (182)
T ss_pred HHHHHHHH-CCCCEEEECCc-chHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecC
Confidence 44555554 56654 46665 59999999999886 3345666775432211100 00111111
Q ss_pred c-----CCHHHHHHHHHhhCCEEEEecCC---cccHHHHHHHHHHHHhCCCCCcEEEEe
Q 027287 102 V-----ADMHQRKAEMAKHSDAFIALPGG---YGTLEELLEVITWAQLGIHDKPVGLLN 152 (225)
Q Consensus 102 ~-----~~m~~Rk~~mv~~sDa~IvlpGG---~GTL~Ei~~a~~~~qlg~~~kPiill~ 152 (225)
. .-|..|++.|+++||++|++=-| .||--=+-.|- .+-..++.||.+++
T Consensus 111 ~~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~A~--k~~~~~~y~i~~I~ 167 (182)
T PRK13660 111 RPYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYEAAK--KKQEKEDYPLDLIT 167 (182)
T ss_pred CCCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHHHHH--HhhhccCceEEEeC
Confidence 1 12689999999999988887322 23432222222 11123578888884
No 23
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=89.77 E-value=12 Score=33.92 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=44.1
Q ss_pred HHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCC-chHHHHHHHHHHHcCCCCcccc
Q 027287 112 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLTFIDKAVEEGFISPNAR 178 (225)
Q Consensus 112 mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~-w~~l~~~l~~~~~~gfi~~~~~ 178 (225)
|+..||+||+-.-.+.-..|.+ ..+|||+++-..++ -..+.-|++.+++++..+.-..
T Consensus 241 ~La~Adyii~TaDSinM~sEAa---------sTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~ 299 (329)
T COG3660 241 MLAAADYIISTADSINMCSEAA---------STGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEG 299 (329)
T ss_pred HHhhcceEEEecchhhhhHHHh---------ccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCc
Confidence 6788999999888877777765 24799999988888 6666777788888776554433
No 24
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=89.67 E-value=13 Score=34.00 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=39.9
Q ss_pred HHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCC---chHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 027287 111 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY---YNSLLTFIDKAVEEGFISPNARHIIVSAPNA 187 (225)
Q Consensus 111 ~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~---w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 187 (225)
.++..||++ +.-||.+|+.|+. ..++|.|++-.... .++. ...+.+.+.|....-. .-.-++
T Consensus 248 ~~~~~adlv-Isr~G~~t~~E~~---------~~g~P~I~iP~~~~~~~~~Q~-~Na~~l~~~g~~~~l~----~~~~~~ 312 (352)
T PRK12446 248 DILAITDFV-ISRAGSNAIFEFL---------TLQKPMLLIPLSKFASRGDQI-LNAESFERQGYASVLY----EEDVTV 312 (352)
T ss_pred HHHHhCCEE-EECCChhHHHHHH---------HcCCCEEEEcCCCCCCCchHH-HHHHHHHHCCCEEEcc----hhcCCH
Confidence 467899954 4566778888886 25799999832111 1222 2234455555332111 111156
Q ss_pred HHHHHHHHhhc
Q 027287 188 KELMNKMEEYF 198 (225)
Q Consensus 188 ee~~~~l~~~~ 198 (225)
+.+.+.+.+..
T Consensus 313 ~~l~~~l~~ll 323 (352)
T PRK12446 313 NSLIKHVEELS 323 (352)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 25
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=88.45 E-value=21 Score=33.11 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCc--hHHHHHHHHHHHcCCCCccccCc
Q 027287 103 ADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY--NSLLTFIDKAVEEGFISPNARHI 180 (225)
Q Consensus 103 ~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w--~~l~~~l~~~~~~gfi~~~~~~~ 180 (225)
..|...-...+..||.+|.= .|..|+.|++. .++|.|++-. .++ ++-..-.+.+.+.|.. .
T Consensus 240 ~~f~~dm~~~~~~ADLvIsR-aGa~Ti~E~~a---------~g~P~IliP~-p~~~~~~Q~~NA~~l~~~gaa------~ 302 (357)
T COG0707 240 LPFIDDMAALLAAADLVISR-AGALTIAELLA---------LGVPAILVPY-PPGADGHQEYNAKFLEKAGAA------L 302 (357)
T ss_pred eeHHhhHHHHHHhccEEEeC-CcccHHHHHHH---------hCCCEEEeCC-CCCccchHHHHHHHHHhCCCE------E
Confidence 34444455667889987654 56789999972 3699999854 344 2222222335555532 1
Q ss_pred EEEcC--CHHHHHHHHHhhcC
Q 027287 181 IVSAP--NAKELMNKMEEYFP 199 (225)
Q Consensus 181 i~~~~--d~ee~~~~l~~~~~ 199 (225)
++--+ +++++.+.|.+...
T Consensus 303 ~i~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 303 VIRQSELTPEKLAELILRLLS 323 (357)
T ss_pred EeccccCCHHHHHHHHHHHhc
Confidence 22222 36688777777654
No 26
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=87.68 E-value=12 Score=34.14 Aligned_cols=72 Identities=24% Similarity=0.263 Sum_probs=42.8
Q ss_pred HHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 027287 108 RKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNA 187 (225)
Q Consensus 108 Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 187 (225)
.-..++..||++|.-+| .+|+.|.. + .++|+|+.+.-. ....-. .+.+.+.|. -+.+.|+
T Consensus 275 ~~~~l~~aaDv~V~~~g-~~ti~EAm---a------~g~PvI~~~~~p-gqe~gn-~~~i~~~g~--------g~~~~~~ 334 (382)
T PLN02605 275 NMEEWMGACDCIITKAG-PGTIAEAL---I------RGLPIILNGYIP-GQEEGN-VPYVVDNGF--------GAFSESP 334 (382)
T ss_pred cHHHHHHhCCEEEECCC-cchHHHHH---H------cCCCEEEecCCC-ccchhh-HHHHHhCCc--------eeecCCH
Confidence 34456789999997555 47876654 2 579999986311 011101 122333332 1245899
Q ss_pred HHHHHHHHhhcC
Q 027287 188 KELMNKMEEYFP 199 (225)
Q Consensus 188 ee~~~~l~~~~~ 199 (225)
+++.+.|.+...
T Consensus 335 ~~la~~i~~ll~ 346 (382)
T PLN02605 335 KEIARIVAEWFG 346 (382)
T ss_pred HHHHHHHHHHHc
Confidence 999888887654
No 27
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=87.55 E-value=5.8 Score=35.72 Aligned_cols=32 Identities=31% Similarity=0.284 Sum_probs=23.3
Q ss_pred HHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEe
Q 027287 110 AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 152 (225)
Q Consensus 110 ~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~ 152 (225)
..++..||++|. ++|..|+ |+. + .++|+|+.-
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea~-a--------~G~PvI~~~ 287 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-ELA-L--------LKVPMVVGY 287 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HHH-H--------hCCCEEEEE
Confidence 456789998877 6778887 663 1 479998763
No 28
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=87.29 E-value=20 Score=31.56 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCC-chHHHHHHHHHHHcCCCCccccCcEEEcC
Q 027287 107 QRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLTFIDKAVEEGFISPNARHIIVSAP 185 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~-w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 185 (225)
..-..++..||++|. ++|.+|+.|.+ + .++|++.....+. .+.-....+.+.+.| ...++-.+
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~~Eam---~------~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g------~g~~v~~~ 307 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTVAELA---A------LGLPAILIPLPYAADDHQTANARALVKAG------AAVLIPQE 307 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHHHHHH---H------hCCCEEEeecCCCCCCcHHHhHHHHHhCC------CEEEEecC
Confidence 344556789999885 55556755554 2 5799998753321 111100011222222 11222222
Q ss_pred --CHHHHHHHHHhhcC
Q 027287 186 --NAKELMNKMEEYFP 199 (225)
Q Consensus 186 --d~ee~~~~l~~~~~ 199 (225)
|++++.+.|.+...
T Consensus 308 ~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 308 ELTPERLAAALLELLS 323 (350)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 79999888887654
No 29
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=86.54 E-value=2.7 Score=34.23 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 38 DAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 38 ~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
.-|.-+.++|+..|+.++++|.. --.+.+++.|.+....+|||
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgv 69 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGV 69 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEE
Confidence 45677899999999999999986 77788899999999999999
No 30
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=85.25 E-value=23 Score=32.68 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=42.0
Q ss_pred HHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCC------cc--ccCcEEE
Q 027287 112 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFIS------PN--ARHIIVS 183 (225)
Q Consensus 112 mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~------~~--~~~~i~~ 183 (225)
.+..||++|.-. |..|+ |++ ..++|+|+......+..+.. +++++-.++. .+ ..+++.-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~---------a~G~P~Vv~yk~~pl~~~~~--~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAA---------LIKTPMVVGYRMKPLTFLIA--RRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHH---------HcCCCEEEEEcCCHHHHHHH--HHHHcCCeeeccHHhcCCccchhhcCC
Confidence 568899887766 66687 665 25799998754333332221 2222222211 11 1233334
Q ss_pred cCCHHHHHHHHHhhcCC
Q 027287 184 APNAKELMNKMEEYFPQ 200 (225)
Q Consensus 184 ~~d~ee~~~~l~~~~~~ 200 (225)
.-+++.+.+.+.++...
T Consensus 331 ~~~~~~l~~~~~~ll~~ 347 (385)
T TIGR00215 331 ECTPHPLAIALLLLLEN 347 (385)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 44788888888777643
No 31
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=84.02 E-value=15 Score=32.43 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=27.2
Q ss_pred HHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027287 106 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 153 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~ 153 (225)
...-.-++..||.+|. .|| +|+-|+.. .++|.+++-.
T Consensus 232 ~~~m~~lm~~aDl~Is-~~G-~T~~E~~a---------~g~P~i~i~~ 268 (279)
T TIGR03590 232 VENMAELMNEADLAIG-AAG-STSWERCC---------LGLPSLAICL 268 (279)
T ss_pred HHHHHHHHHHCCEEEE-CCc-hHHHHHHH---------cCCCEEEEEe
Confidence 3444556789999998 566 89888862 4799998854
No 32
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=83.74 E-value=31 Score=30.66 Aligned_cols=105 Identities=17% Similarity=0.105 Sum_probs=54.6
Q ss_pred CCCeEEEcCCCccHHHHHHHHHHhcCC-eEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEecCCccc
Q 027287 50 RNIDLVYGGGSVGLMGLISQAVYDGGR-HVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGT 128 (225)
Q Consensus 50 ~G~~lv~GGg~~GlM~a~a~gA~~aGG-~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GT 128 (225)
.++.+||||+. | .+.+.+.-.+... .++---++... .... ..+.+.....+.-.-++..||++|.= ||.+|
T Consensus 188 ~~~iLv~~g~~-~-~~~l~~~l~~~~~~~~i~~~~~~~~-~~~~----~~v~~~~~~~~~~~~~l~~ad~vI~~-~G~~t 259 (321)
T TIGR00661 188 EDYILVYIGFE-Y-RYKILELLGKIANVKFVCYSYEVAK-NSYN----ENVEIRRITTDNFKELIKNAELVITH-GGFSL 259 (321)
T ss_pred CCcEEEECCcC-C-HHHHHHHHHhCCCeEEEEeCCCCCc-cccC----CCEEEEECChHHHHHHHHhCCEEEEC-CChHH
Confidence 36688998653 5 4555554434443 22211222111 1111 12222221123444566788887765 67789
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCC
Q 027287 129 LEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGF 172 (225)
Q Consensus 129 L~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gf 172 (225)
+.|.. .+++|++++...+.++.... .+.+.+.|.
T Consensus 260 ~~Ea~---------~~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 260 ISEAL---------SLGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHHHH---------HcCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 77754 25899999876666555433 234555553
No 33
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=83.51 E-value=1.1 Score=36.02 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=22.6
Q ss_pred HHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027287 110 AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 153 (225)
Q Consensus 110 ~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~ 153 (225)
..++..|| +|+--||.||+.|+.. .++|.|++-.
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ip~ 100 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVIPL 100 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE--
T ss_pred HHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeeccCC
Confidence 34668899 6777899999998862 5799988743
No 34
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=79.28 E-value=3.6 Score=37.08 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCe-EEEcCCCccHHHHHHHHHHhcCCeEEEEeCCc
Q 027287 39 AAIELGKELVARNID-LVYGGGSVGLMGLISQAVYDGGRHVIGVIPKT 85 (225)
Q Consensus 39 ~A~~lG~~LA~~G~~-lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~ 85 (225)
.|.++++.++..++. |+.+|| .|...+++.|....+...+||+|.-
T Consensus 46 ~a~~~a~~a~~~~~D~via~GG-DGTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGG-DGTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecC-cchHHHHHHHHhcCCCCceEEecCC
Confidence 456777777776664 557777 5999999999999998889999963
No 35
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=74.80 E-value=17 Score=30.85 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=44.8
Q ss_pred hCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEee--cCCHHHHHHHHH---------hhCC
Q 027287 49 ARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKP--VADMHQRKAEMA---------KHSD 117 (225)
Q Consensus 49 ~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~--~~~m~~Rk~~mv---------~~sD 117 (225)
+.|..||||| + |..+.++-.++++++..++-+- +...|.+. ..+++ .+++-+..+..+ +.-|
T Consensus 2 sagrVivYGG-k-GALGSacv~~FkannywV~siD--l~eNe~Ad---~sI~V~~~~swtEQe~~v~~~vg~sL~gekvD 74 (236)
T KOG4022|consen 2 SAGRVIVYGG-K-GALGSACVEFFKANNYWVLSID--LSENEQAD---SSILVDGNKSWTEQEQSVLEQVGSSLQGEKVD 74 (236)
T ss_pred CCceEEEEcC-c-chHhHHHHHHHHhcCeEEEEEe--eccccccc---ceEEecCCcchhHHHHHHHHHHHHhhcccccc
Confidence 3578899997 5 9999999999999987776531 11122221 11222 344544444443 2469
Q ss_pred EEEEecCCc
Q 027287 118 AFIALPGGY 126 (225)
Q Consensus 118 a~IvlpGG~ 126 (225)
+++.+.||.
T Consensus 75 av~CVAGGW 83 (236)
T KOG4022|consen 75 AVFCVAGGW 83 (236)
T ss_pred eEEEeeccc
Confidence 999998875
No 36
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=74.58 E-value=18 Score=33.44 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=30.6
Q ss_pred CCc-EEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 027287 145 DKP-VGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEE 196 (225)
Q Consensus 145 ~kP-iill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 196 (225)
.+| +++++..-|+......+..+.+.-.. ....+++.-+++.++++..+
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~~---~~~~V~ld~ple~~l~RN~~ 174 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYSL---GFCQLFLDCPVESCLLRNKQ 174 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhCC---CEEEEEEeCCHHHHHHHHhc
Confidence 577 56777766777777776665543111 12456777777777777654
No 37
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=74.56 E-value=19 Score=31.54 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=23.7
Q ss_pred HHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 027287 110 AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 155 (225)
Q Consensus 110 ~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g 155 (225)
..+...+|++++ .+|.++-+.+..+... +..+++|++ ++.+|
T Consensus 87 ~~~~~~~davvi-g~Gl~~~~~~~~l~~~--~~~~~~pvV-lDa~g 128 (272)
T TIGR00196 87 EELLERYDVVVI-GPGLGQDPSFKKAVEE--VLELDKPVV-LDADA 128 (272)
T ss_pred HhhhccCCEEEE-cCCCCCCHHHHHHHHH--HHhcCCCEE-EEhHH
Confidence 334566777666 6668886654433322 223578864 57654
No 38
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=73.72 E-value=4.9 Score=32.58 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=27.8
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 027287 16 QSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYG 57 (225)
Q Consensus 16 ~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 57 (225)
..+.++|+|+|-|..+..+. +.+.+.|-++||.|+==
T Consensus 13 L~~~K~IAvVG~S~~P~r~s-----y~V~kyL~~~GY~ViPV 49 (140)
T COG1832 13 LKSAKTIAVVGASDKPDRPS-----YRVAKYLQQKGYRVIPV 49 (140)
T ss_pred HHhCceEEEEecCCCCCccH-----HHHHHHHHHCCCEEEee
Confidence 34567999998777654454 46888999999999843
No 39
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=72.88 E-value=18 Score=32.67 Aligned_cols=76 Identities=21% Similarity=0.181 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEE
Q 027287 104 DMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVS 183 (225)
Q Consensus 104 ~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 183 (225)
++.+.-.-++..||++|.-+|| .|+.|.. . .++|+|+.+..+.... ...+.+.+.|+ .+.
T Consensus 262 g~~~~~~~l~~~aD~~v~~~gg-~t~~EA~---a------~g~PvI~~~~~~g~~~--~n~~~~~~~G~--------~~~ 321 (380)
T PRK13609 262 GYVENIDELFRVTSCMITKPGG-ITLSEAA---A------LGVPVILYKPVPGQEK--ENAMYFERKGA--------AVV 321 (380)
T ss_pred echhhHHHHHHhccEEEeCCCc-hHHHHHH---H------hCCCEEECCCCCCcch--HHHHHHHhCCc--------EEE
Confidence 3333444567899988865554 4655544 2 4799988763222111 11112233343 345
Q ss_pred cCCHHHHHHHHHhhcC
Q 027287 184 APNAKELMNKMEEYFP 199 (225)
Q Consensus 184 ~~d~ee~~~~l~~~~~ 199 (225)
..|++++.+.|.+...
T Consensus 322 ~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 322 IRDDEEVFAKTEALLQ 337 (380)
T ss_pred ECCHHHHHHHHHHHHC
Confidence 6788888888877653
No 40
>PRK09267 flavodoxin FldA; Validated
Probab=72.08 E-value=41 Score=27.01 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=18.0
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELV 48 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA 48 (225)
++|.|+.+|..++.. +.|+++++.|.
T Consensus 2 mki~IiY~S~tGnT~---~vA~~Ia~~l~ 27 (169)
T PRK09267 2 AKIGIFFGSDTGNTE---DIAKMIQKKLG 27 (169)
T ss_pred CeEEEEEECCCChHH---HHHHHHHHHhC
Confidence 478888888887533 35677777764
No 41
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=70.85 E-value=29 Score=32.58 Aligned_cols=128 Identities=22% Similarity=0.201 Sum_probs=68.1
Q ss_pred HHhCCCeEEEcCCCcc----HHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEe
Q 027287 47 LVARNIDLVYGGGSVG----LMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIAL 122 (225)
Q Consensus 47 LA~~G~~lv~GGg~~G----lM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~Ivl 122 (225)
.+.+....++=|+ .+ +-+.+.+...+.+.++|--.... .. .. .+-....++....+ ...++..||+|| -
T Consensus 234 ~~d~~~vyvslGt-~~~~~~l~~~~~~a~~~l~~~vi~~~~~~-~~-~~-~~~p~n~~v~~~~p--~~~~l~~ad~vI-~ 306 (406)
T COG1819 234 PADRPIVYVSLGT-VGNAVELLAIVLEALADLDVRVIVSLGGA-RD-TL-VNVPDNVIVADYVP--QLELLPRADAVI-H 306 (406)
T ss_pred cCCCCeEEEEcCC-cccHHHHHHHHHHHHhcCCcEEEEecccc-cc-cc-ccCCCceEEecCCC--HHHHhhhcCEEE-e
Confidence 3445566665554 36 45566666777788776665431 11 00 11111233334333 233778888765 6
Q ss_pred cCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEE-cCCHHHHHHHHHhhc
Q 027287 123 PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVS-APNAKELMNKMEEYF 198 (225)
Q Consensus 123 pGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~-~~d~ee~~~~l~~~~ 198 (225)
.||.||..|.. .+++|++++-. .||.... .+...+.|.=. .+.+ .-+++.+.+.+++..
T Consensus 307 hGG~gtt~eaL---------~~gvP~vv~P~--~~DQ~~n-A~rve~~G~G~-----~l~~~~l~~~~l~~av~~vL 366 (406)
T COG1819 307 HGGAGTTSEAL---------YAGVPLVVIPD--GADQPLN-AERVEELGAGI-----ALPFEELTEERLRAAVNEVL 366 (406)
T ss_pred cCCcchHHHHH---------HcCCCEEEecC--CcchhHH-HHHHHHcCCce-----ecCcccCCHHHHHHHHHHHh
Confidence 89999998875 36899999843 2555332 23333333211 1111 345555555555544
No 42
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=69.68 E-value=92 Score=28.61 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=45.6
Q ss_pred eEeecCCHHHHHHHHHhhCCEEEEec---CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCC
Q 027287 98 EVKPVADMHQRKAEMAKHSDAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFIS 174 (225)
Q Consensus 98 ~~~~~~~m~~Rk~~mv~~sDa~Ivlp---GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~ 174 (225)
++++.+++. .-..+...||++++.+ .|.|.- +.|+++ .++|||.-...+-+.++.+ .+.+.|
T Consensus 303 ~v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma------~G~PVI~g~~~~~~~e~~~---~~~~~g--- 367 (425)
T PRK05749 303 DVLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAA------FGVPVISGPHTFNFKEIFE---RLLQAG--- 367 (425)
T ss_pred cEEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHH------hCCCEEECCCccCHHHHHH---HHHHCC---
Confidence 345555443 3445678999877642 122322 455553 5899997322122333332 233333
Q ss_pred ccccCcEEEcCCHHHHHHHHHhhcC
Q 027287 175 PNARHIIVSAPNAKELMNKMEEYFP 199 (225)
Q Consensus 175 ~~~~~~i~~~~d~ee~~~~l~~~~~ 199 (225)
.++..+|++++.+.|.+...
T Consensus 368 -----~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 368 -----AAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred -----CeEEECCHHHHHHHHHHHhc
Confidence 34557889988888887654
No 43
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=68.53 E-value=14 Score=33.98 Aligned_cols=74 Identities=24% Similarity=0.216 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEc
Q 027287 105 MHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSA 184 (225)
Q Consensus 105 m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 184 (225)
+.++-.-++..||++|.-|||. |+.|.. + .++|+|+.+..+- ++..+ ..-+.+.|+ -+..
T Consensus 263 ~~~~~~~~~~~aDl~I~k~gg~-tl~EA~---a------~G~PvI~~~~~pg-qe~~N-~~~~~~~G~--------g~~~ 322 (391)
T PRK13608 263 YTKHMNEWMASSQLMITKPGGI-TISEGL---A------RCIPMIFLNPAPG-QELEN-ALYFEEKGF--------GKIA 322 (391)
T ss_pred ccchHHHHHHhhhEEEeCCchH-HHHHHH---H------hCCCEEECCCCCC-cchhH-HHHHHhCCc--------EEEe
Confidence 3344556779999999877764 766654 2 4799999864321 11111 011223332 2346
Q ss_pred CCHHHHHHHHHhhc
Q 027287 185 PNAKELMNKMEEYF 198 (225)
Q Consensus 185 ~d~ee~~~~l~~~~ 198 (225)
+|++++.+.|.+..
T Consensus 323 ~~~~~l~~~i~~ll 336 (391)
T PRK13608 323 DTPEEAIKIVASLT 336 (391)
T ss_pred CCHHHHHHHHHHHh
Confidence 78888877777664
No 44
>PRK08105 flavodoxin; Provisional
Probab=68.13 E-value=7.1 Score=31.41 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=26.9
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
|.+|.|+.||..++.+ +.|++|++.|.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnte---~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNAL---LVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHhCCCceE
Confidence 4578999899988644 568999999988887754
No 45
>PRK13337 putative lipid kinase; Reviewed
Probab=67.85 E-value=13 Score=33.04 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCC-eEEEcCCCccHHHHHHHHHHhcCC-eEEEEeCC
Q 027287 41 IELGKELVARNI-DLVYGGGSVGLMGLISQAVYDGGR-HVIGVIPK 84 (225)
Q Consensus 41 ~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~aGG-~viGIiP~ 84 (225)
.++.+.++++++ .||..|| .|-..++..+....+- ..+||+|.
T Consensus 47 ~~~a~~~~~~~~d~vvv~GG-DGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 47 TLAAERAVERKFDLVIAAGG-DGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred HHHHHHHHhcCCCEEEEEcC-CCHHHHHHHHHhhCCCCCcEEEECC
Confidence 444555555553 4556666 4999999998876643 47999995
No 46
>PRK00861 putative lipid kinase; Reviewed
Probab=67.81 E-value=11 Score=33.34 Aligned_cols=42 Identities=24% Similarity=0.474 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCC-eEEEcCCCccHHHHHHHHHHhcCCeEEEEeCC
Q 027287 41 IELGKELVARNI-DLVYGGGSVGLMGLISQAVYDGGRHVIGVIPK 84 (225)
Q Consensus 41 ~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~ 84 (225)
.++++..++.++ .||..|| .|-...+..+.... +..+||+|.
T Consensus 47 ~~~a~~~~~~~~d~vv~~GG-DGTl~evv~~l~~~-~~~lgviP~ 89 (300)
T PRK00861 47 DQLAQEAIERGAELIIASGG-DGTLSAVAGALIGT-DIPLGIIPR 89 (300)
T ss_pred HHHHHHHHhcCCCEEEEECC-hHHHHHHHHHHhcC-CCcEEEEcC
Confidence 455555655654 4566777 59999999988765 467999996
No 47
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=67.37 E-value=3.9 Score=42.39 Aligned_cols=48 Identities=33% Similarity=0.497 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhc-----------CCeEEEEeCCccccCC
Q 027287 41 IELGKELVARNIDLVYGGGSVGLMGLISQAVYDG-----------GRHVIGVIPKTLMPRE 90 (225)
Q Consensus 41 ~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~a-----------GG~viGIiP~~~~~~e 90 (225)
.+|+|.|..+-+.||.||| |.=+++.-|++.| ||.+||-.-..++..|
T Consensus 829 sRLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA~e 887 (1158)
T KOG2968|consen 829 SRLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYAEE 887 (1158)
T ss_pred HHHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhhcc
Confidence 3689999999999999997 8999999998864 7778886545554433
No 48
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=66.70 E-value=9.9 Score=29.35 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=28.2
Q ss_pred HHHHHHHhCCC--eEEEcCCCccHHHHHHHHHHhcCC---eEEEEeCCc
Q 027287 42 ELGKELVARNI--DLVYGGGSVGLMGLISQAVYDGGR---HVIGVIPKT 85 (225)
Q Consensus 42 ~lG~~LA~~G~--~lv~GGg~~GlM~a~a~gA~~aGG---~viGIiP~~ 85 (225)
++.+....... .||..||. |-.-.+..+....+. ..+||+|.-
T Consensus 44 ~~~~~~~~~~~~~~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 44 ALARILALDDYPDVIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp HHHHHHHHTTS-SEEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-S
T ss_pred HHHHHHhhccCccEEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecCC
Confidence 44444444443 66666674 888888888887765 479999853
No 49
>PRK09004 FMN-binding protein MioC; Provisional
Probab=66.52 E-value=7.1 Score=31.31 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=26.4
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
|.+|.|+.||..++.+ +.|++|++.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGnae---~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGAE---YVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHHcCCceE
Confidence 4578998899998644 568899999988887644
No 50
>PRK11914 diacylglycerol kinase; Reviewed
Probab=65.40 E-value=99 Score=27.40 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=10.7
Q ss_pred EEEecCCcccHHHHHHHH
Q 027287 119 FIALPGGYGTLEELLEVI 136 (225)
Q Consensus 119 ~IvlpGG~GTL~Ei~~a~ 136 (225)
.|+.-||=||++|+...+
T Consensus 67 ~vvv~GGDGTi~evv~~l 84 (306)
T PRK11914 67 ALVVVGGDGVISNALQVL 84 (306)
T ss_pred EEEEECCchHHHHHhHHh
Confidence 345566666666666544
No 51
>PRK13055 putative lipid kinase; Reviewed
Probab=64.77 E-value=15 Score=33.30 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCC-eEEEcCCCccHHHHHHHHHHhcC-CeEEEEeCC
Q 027287 41 IELGKELVARNI-DLVYGGGSVGLMGLISQAVYDGG-RHVIGVIPK 84 (225)
Q Consensus 41 ~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~aG-G~viGIiP~ 84 (225)
.++.+.++..++ .||..|| .|-+..++.+....+ ...+||+|.
T Consensus 49 ~~~~~~~~~~~~d~vvv~GG-DGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGG-DGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHhhcCCCEEEEECC-CCHHHHHHHHHhhcCCCCcEEEECC
Confidence 445555555553 4555666 499999999988654 456999995
No 52
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=64.07 E-value=61 Score=27.25 Aligned_cols=53 Identities=25% Similarity=0.231 Sum_probs=36.5
Q ss_pred HHHHHHHHhhCCEEEEecC--C----cccHHHHHHHHHHHHhCCCCCcEEEEeCC--CCchHHHHHH
Q 027287 106 HQRKAEMAKHSDAFIALPG--G----YGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYNSLLTFI 164 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~IvlpG--G----~GTL~Ei~~a~~~~qlg~~~kPiill~~~--g~w~~l~~~l 164 (225)
.+=...+++.||++|+.-= - .||.-|+-.++. .+||++.+..+ .|...+...+
T Consensus 59 ~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~A------lgKPv~~~~~d~~~~~~r~~~~~ 119 (172)
T COG3613 59 YEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIA------LGKPVYAYRKDAANYASRLNAHL 119 (172)
T ss_pred HHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHH------cCCceEEEeecccchhhHHHHhH
Confidence 3444557799999888754 3 799999998884 47999987653 2344444433
No 53
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=63.77 E-value=28 Score=29.86 Aligned_cols=41 Identities=32% Similarity=0.461 Sum_probs=22.7
Q ss_pred HHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCC
Q 027287 112 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 156 (225)
Q Consensus 112 mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~ 156 (225)
.....|++++ .+|.|+-+.+..+..... .++.|++ +|.++.
T Consensus 74 ~~~~~d~v~i-g~gl~~~~~~~~i~~~~~--~~~~pvV-lDa~~~ 114 (254)
T cd01171 74 LLERADAVVI-GPGLGRDEEAAEILEKAL--AKDKPLV-LDADAL 114 (254)
T ss_pred hhccCCEEEE-ecCCCCCHHHHHHHHHHH--hcCCCEE-EEcHHH
Confidence 3456787665 555877544443332222 3468865 577653
No 54
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.70 E-value=38 Score=30.63 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=39.2
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe------------------------------------EEEcCC
Q 027287 16 QSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNID------------------------------------LVYGGG 59 (225)
Q Consensus 16 ~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~------------------------------------lv~GGg 59 (225)
.+.+++|+|+. +.. ++...+.+.++.++|.++|+. |+.| |
T Consensus 2 ~~~~~~i~ii~--~~~-~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lG-G 77 (296)
T PRK04539 2 NSPFHNIGIVT--RPN-TPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLG-G 77 (296)
T ss_pred CCCCCEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEEC-C
Confidence 34577899994 222 355667788888888655532 3334 4
Q ss_pred CccHHHHHHHHHHhcCCeEEEE
Q 027287 60 SVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 60 ~~GlM~a~a~gA~~aGG~viGI 81 (225)
.|-|-.+++-+...+-.++||
T Consensus 78 -DGT~L~aa~~~~~~~~PilGI 98 (296)
T PRK04539 78 -DGTFLSVAREIAPRAVPIIGI 98 (296)
T ss_pred -cHHHHHHHHHhcccCCCEEEE
Confidence 477777777666666677887
No 55
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=63.25 E-value=10 Score=32.26 Aligned_cols=41 Identities=20% Similarity=0.066 Sum_probs=31.4
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE-EcC
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV-YGG 58 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv-~GG 58 (225)
++++|+|||||=++.+..+...|+++.+.|.-.-...+ ++.
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~ 42 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPV 42 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 46899999999998888888888888888866553333 444
No 56
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=62.97 E-value=9.5 Score=29.52 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=25.4
Q ss_pred EEEecCCcccHHHHHHHHHHHHhCC--CCCcEEEEeCCCCchHHH
Q 027287 119 FIALPGGYGTLEELLEVITWAQLGI--HDKPVGLLNVDGYYNSLL 161 (225)
Q Consensus 119 ~IvlpGG~GTL~Ei~~a~~~~qlg~--~~kPiill~~~g~w~~l~ 161 (225)
.|+.-||=||++|+...+. +... ...|+.++- .|==+++-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~--~~~~~~~~~plgiiP-~GTgNdfa 93 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALD--KRELPLPEPPVAVLP-LGTGNDLA 93 (124)
T ss_pred EEEEEccccHHHHHHHHHH--hcccccCCCcEEEeC-CCChhHHH
Confidence 7778999999999987773 2221 115787773 34334443
No 57
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=62.84 E-value=1.3e+02 Score=27.84 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=41.2
Q ss_pred CCEEE-EecCCcccHHHHHHHHHHHHhC-CCCCcEEEEeCCC-CchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHH
Q 027287 116 SDAFI-ALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDG-YYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMN 192 (225)
Q Consensus 116 sDa~I-vlpGG~GTL~Ei~~a~~~~qlg-~~~kPiill~~~g-~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~ 192 (225)
.|+++ .++|++...+++.+++.-..-. .++|||++. ..| ..+...+. +.+.|+ -+.+.++++++++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~-~~g~~~~~~~~~---L~~~Gi-------~ip~f~~pe~A~~ 379 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVR-LEGTNVELGKKI---LAESGL-------NIIAADTLDDAAQ 379 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHH---HHHCCC-------CceecCCHHHHHH
Confidence 46654 4567777777777776533221 157999554 333 22222222 333231 1567899999999
Q ss_pred HHHhh
Q 027287 193 KMEEY 197 (225)
Q Consensus 193 ~l~~~ 197 (225)
.+.+.
T Consensus 380 al~~~ 384 (388)
T PRK00696 380 KAVEA 384 (388)
T ss_pred HHHHH
Confidence 98764
No 58
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=61.12 E-value=1.2e+02 Score=26.90 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCC--CchHHHHHHHHHHHcCCCCccccCcE
Q 027287 104 DMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG--YYNSLLTFIDKAVEEGFISPNARHII 181 (225)
Q Consensus 104 ~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g--~w~~l~~~l~~~~~~gfi~~~~~~~i 181 (225)
++...-..++..||++|. .+|.+|+-|.. . .++|++.....+ ..+... ..+.+.+.| ...+
T Consensus 241 g~~~~~~~~~~~~d~~i~-~~g~~~~~Ea~---~------~g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~------~g~~ 303 (357)
T PRK00726 241 PFIDDMAAAYAAADLVIC-RAGASTVAELA---A------AGLPAILVPLPHAADDHQTA-NARALVDAG------AALL 303 (357)
T ss_pred ehHhhHHHHHHhCCEEEE-CCCHHHHHHHH---H------hCCCEEEecCCCCCcCcHHH-HHHHHHHCC------CEEE
Confidence 333334567789999986 55667766654 1 479999875421 111111 112233333 1223
Q ss_pred EEcCC--HHHHHHHHHhhcC
Q 027287 182 VSAPN--AKELMNKMEEYFP 199 (225)
Q Consensus 182 ~~~~d--~ee~~~~l~~~~~ 199 (225)
.-.+| ++++.+.|++...
T Consensus 304 ~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 304 IPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred EEcccCCHHHHHHHHHHHHc
Confidence 33445 8888888887654
No 59
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=60.99 E-value=21 Score=32.58 Aligned_cols=28 Identities=18% Similarity=0.073 Sum_probs=19.2
Q ss_pred ceEeecCCHHHHHHHHHhhCCEEEEecC
Q 027287 97 GEVKPVADMHQRKAEMAKHSDAFIALPG 124 (225)
Q Consensus 97 ~~~~~~~~m~~Rk~~mv~~sDa~IvlpG 124 (225)
.+-++-+|+..-+---.-.||.+|+|-.
T Consensus 207 VeAVIDKDlasalLA~~i~AD~liILTd 234 (312)
T COG0549 207 VEAVIDKDLASALLAEQIDADLLIILTD 234 (312)
T ss_pred eeEEEccHHHHHHHHHHhcCCEEEEEec
Confidence 4567778885433333357999999976
No 60
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.68 E-value=16 Score=33.11 Aligned_cols=106 Identities=26% Similarity=0.343 Sum_probs=61.3
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCc
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVG 97 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~ 97 (225)
++++|.++.- .+ .+...+.+.++.+.|.+.|+.+..---. . + .. + ...
T Consensus 2 ~~kkv~lI~n--~~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~-~------~---~~-----~------------~~~-- 49 (305)
T PRK02645 2 QLKQVIIAYK--AG-SSQAKEAAERCAKQLEARGCKVLMGPSG-P------K---DN-----P------------YPV-- 49 (305)
T ss_pred CcCEEEEEEe--CC-CHHHHHHHHHHHHHHHHCCCEEEEecCc-h------h---hc-----c------------ccc--
Confidence 4567888843 23 3445567888888898999886643211 0 0 00 0 000
Q ss_pred eEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC---CCchHH------HHHHHHHH
Q 027287 98 EVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD---GYYNSL------LTFIDKAV 168 (225)
Q Consensus 98 ~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~---g~w~~l------~~~l~~~~ 168 (225)
. ........|.+|++ ||=||+.+++..+. ..++|++.+|.+ ||..+. .+.++++.
T Consensus 50 -------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 50 -------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred -------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHH
Confidence 0 00111346766666 99999998886652 357999999862 565543 34455554
Q ss_pred HcC
Q 027287 169 EEG 171 (225)
Q Consensus 169 ~~g 171 (225)
+..
T Consensus 114 ~g~ 116 (305)
T PRK02645 114 EDR 116 (305)
T ss_pred cCC
Confidence 433
No 61
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=60.13 E-value=38 Score=28.29 Aligned_cols=88 Identities=18% Similarity=0.290 Sum_probs=54.3
Q ss_pred HHhhCCEEEEecCCcccHHHHHHHHHHH-----HhC-CCCCcEEEEeC--CCCchH--HHHHHHHHHHcCC--CCccccC
Q 027287 112 MAKHSDAFIALPGGYGTLEELLEVITWA-----QLG-IHDKPVGLLNV--DGYYNS--LLTFIDKAVEEGF--ISPNARH 179 (225)
Q Consensus 112 mv~~sDa~IvlpGG~GTL~Ei~~a~~~~-----qlg-~~~kPiill~~--~g~w~~--l~~~l~~~~~~gf--i~~~~~~ 179 (225)
+...+|++||.|-..+|+.-+..=++-. -+. ..++|+++.-. ...|.. ..+.++++.+.|+ +++....
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 4467999999999999998775321111 011 24799998632 246664 2344556666663 3333211
Q ss_pred c------EEEcCCHHHHHHHHHhhcC
Q 027287 180 I------IVSAPNAKELMNKMEEYFP 199 (225)
Q Consensus 180 ~------i~~~~d~ee~~~~l~~~~~ 199 (225)
+ .---.+++++++++.++..
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhc
Confidence 1 3446789999999988754
No 62
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=59.94 E-value=61 Score=25.89 Aligned_cols=83 Identities=23% Similarity=0.307 Sum_probs=40.7
Q ss_pred CCeEEEcCCCccHHHHHHHHHHhcCC---eEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHh--hCCEEEEecCC
Q 027287 51 NIDLVYGGGSVGLMGLISQAVYDGGR---HVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAK--HSDAFIALPGG 125 (225)
Q Consensus 51 G~~lv~GGg~~GlM~a~a~gA~~aGG---~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~--~sDa~IvlpGG 125 (225)
+..+|+=.| ++..++.+.+.+.|- .++.+ .|..+ -++.+=-..+.+ ..+++++.-=|
T Consensus 3 ~valisQSG--~~~~~~~~~~~~~g~g~s~~vs~-----------Gn~~d-----v~~~d~l~~~~~D~~t~~I~ly~E~ 64 (138)
T PF13607_consen 3 GVALISQSG--ALGTAILDWAQDRGIGFSYVVSV-----------GNEAD-----VDFADLLEYLAEDPDTRVIVLYLEG 64 (138)
T ss_dssp SEEEEES-H--HHHHHHHHHHHHTT-EESEEEE------------TT-SS-----S-HHHHHHHHCT-SS--EEEEEES-
T ss_pred CEEEEECCH--HHHHHHHHHHHHcCCCeeEEEEe-----------Ccccc-----CCHHHHHHHHhcCCCCCEEEEEccC
Confidence 345665543 677777787877753 12222 11111 122222233332 35577777778
Q ss_pred cccHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027287 126 YGTLEELLEVITWAQLGIHDKPVGLLNVD 154 (225)
Q Consensus 126 ~GTL~Ei~~a~~~~qlg~~~kPiill~~~ 154 (225)
++--.+++++.. ..... ||||+|..+
T Consensus 65 ~~d~~~f~~~~~--~a~~~-KPVv~lk~G 90 (138)
T PF13607_consen 65 IGDGRRFLEAAR--RAARR-KPVVVLKAG 90 (138)
T ss_dssp -S-HHHHHHHHH--HHCCC-S-EEEEE--
T ss_pred CCCHHHHHHHHH--HHhcC-CCEEEEeCC
Confidence 888888888774 34344 999999764
No 63
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=59.89 E-value=22 Score=33.52 Aligned_cols=83 Identities=24% Similarity=0.404 Sum_probs=51.1
Q ss_pred CeEEEcCCCccHHHHHHHHHHh--------------------cCCeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHH
Q 027287 52 IDLVYGGGSVGLMGLISQAVYD--------------------GGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAE 111 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~a~gA~~--------------------aGG~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~ 111 (225)
|.|.+|-|| |+.+--.+-+.+ .+|++.||--+.+.|.....-.-+.-.+.-+|
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdF------ 213 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDF------ 213 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecce------
Confidence 678899998 999888777766 36677887544444322211111111122222
Q ss_pred HHhhCCEEEEecCCcccHHHHH-HHHHHHHhC
Q 027287 112 MAKHSDAFIALPGGYGTLEELL-EVITWAQLG 142 (225)
Q Consensus 112 mv~~sDa~IvlpGG~GTL~Ei~-~a~~~~qlg 142 (225)
.-++.++||-.||+|--.|+. ..|--..+|
T Consensus 214 -ef~A~aviv~SGGIGGnhelVRrnWP~eRlG 244 (552)
T COG3573 214 -EFSASAVIVASGGIGGNHELVRRNWPTERLG 244 (552)
T ss_pred -EEeeeeEEEecCCcCCCHHHHHhcCchhhcC
Confidence 246889999999999888886 344334455
No 64
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=59.87 E-value=24 Score=31.37 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=28.5
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVY 56 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~ 56 (225)
+++|+|.+|......+.=.+.|+.+.+.|.+.||.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 44788866655555565568899999999999998663
No 65
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=59.27 E-value=26 Score=27.37 Aligned_cols=40 Identities=33% Similarity=0.453 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHh----CCCeEE---EcCCC-ccHHHHHHHHHHhcCC
Q 027287 37 KDAAIELGKELVA----RNIDLV---YGGGS-VGLMGLISQAVYDGGR 76 (225)
Q Consensus 37 ~~~A~~lG~~LA~----~G~~lv---~GGg~-~GlM~a~a~gA~~aGG 76 (225)
.+.|+.+|+.||+ .|+.=| -||.. .|-+.|++++|.++|-
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~Gl 112 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGL 112 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhCC
Confidence 5678888888886 464433 23322 6899999999999874
No 66
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=59.15 E-value=1.5e+02 Score=27.42 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=31.5
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHH
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQA 70 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~g 70 (225)
+++|+|+|+.+.+ ..|+..||++||.+.--|-...++...+..
T Consensus 1 ~~kI~ViGaGswG---------TALA~~la~ng~~V~lw~r~~~~~~~i~~~ 43 (329)
T COG0240 1 MMKIAVIGAGSWG---------TALAKVLARNGHEVRLWGRDEEIVAEINET 43 (329)
T ss_pred CceEEEEcCChHH---------HHHHHHHHhcCCeeEEEecCHHHHHHHHhc
Confidence 4689999765554 368999999999988766665666665544
No 67
>PRK11914 diacylglycerol kinase; Reviewed
Probab=58.52 E-value=21 Score=31.74 Aligned_cols=44 Identities=27% Similarity=0.343 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCC-eEEEcCCCccHHHHHHHHHHhcCCeEEEEeCC
Q 027287 39 AAIELGKELVARNI-DLVYGGGSVGLMGLISQAVYDGGRHVIGVIPK 84 (225)
Q Consensus 39 ~A~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~ 84 (225)
.|.++++.+++.++ .||..|| .|--.+++.+.... +..+||+|.
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GG-DGTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGG-DGVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECC-chHHHHHhHHhccC-CCcEEEEeC
Confidence 35666666666664 3556666 49999998887543 456999995
No 68
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=58.42 E-value=52 Score=25.63 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=5.3
Q ss_pred CEEEEecCCcc
Q 027287 117 DAFIALPGGYG 127 (225)
Q Consensus 117 Da~IvlpGG~G 127 (225)
|++|||+||..
T Consensus 1 d~IvVLG~~~~ 11 (150)
T cd06259 1 DAIVVLGGGVN 11 (150)
T ss_pred CEEEEeCCccC
Confidence 44455555444
No 69
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.76 E-value=62 Score=29.14 Aligned_cols=62 Identities=19% Similarity=0.165 Sum_probs=38.6
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe------------------------------EEEcCCCccHHH
Q 027287 16 QSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNID------------------------------LVYGGGSVGLMG 65 (225)
Q Consensus 16 ~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~------------------------------lv~GGg~~GlM~ 65 (225)
++++++|+|+. +.. ++...+.+.++.++|.++|+. +++=|| .|-+-
T Consensus 2 ~~~~~~i~iv~--~~~-~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGG-DGT~L 77 (292)
T PRK03378 2 NNHFKCIGIVG--HPR-HPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGG-DGNML 77 (292)
T ss_pred CccCCEEEEEE--eCC-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECC-cHHHH
Confidence 45578899994 222 355566778888877654432 223344 37777
Q ss_pred HHHHHHHhcCCeEEEE
Q 027287 66 LISQAVYDGGRHVIGV 81 (225)
Q Consensus 66 a~a~gA~~aGG~viGI 81 (225)
.+++.+...+-.++||
T Consensus 78 ~aa~~~~~~~~Pilgi 93 (292)
T PRK03378 78 GAARVLARYDIKVIGI 93 (292)
T ss_pred HHHHHhcCCCCeEEEE
Confidence 6776665556677777
No 70
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=56.71 E-value=1.2e+02 Score=27.14 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=36.4
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCc
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKT 85 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~ 85 (225)
.+++-|- |++.+. .+++++.||++|+.||-=+...=-.+++++.-.+..|..+=|+|-.
T Consensus 6 ~~~~lIT-GASsGI-------G~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 6 GKTALIT-GASSGI-------GAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred CcEEEEE-CCCchH-------HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECc
Confidence 3444444 555542 3567888899999998777765555666665555444445555543
No 71
>PRK05723 flavodoxin; Provisional
Probab=56.64 E-value=13 Score=30.01 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=26.5
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
++|+|+.||..++.+ +.|++|++.|.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~ae---~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTAE---EVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHHH---HHHHHHHHHHHHCCCcee
Confidence 478898899998644 468899999988888864
No 72
>PRK06703 flavodoxin; Provisional
Probab=55.88 E-value=98 Score=24.26 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDL 54 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~l 54 (225)
++|.|+.+|..++.. +.|+++++.|...|+.+
T Consensus 2 mkv~IiY~S~tGnT~---~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 2 AKILIAYASMSGNTE---DIADLIKVSLDAFDHEV 33 (151)
T ss_pred CeEEEEEECCCchHH---HHHHHHHHHHHhcCCce
Confidence 456666677777533 46778888887777654
No 73
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=55.51 E-value=1.6e+02 Score=26.52 Aligned_cols=155 Identities=14% Similarity=0.067 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHh--cCCeEEEEeCCccccCCCCCCCCceEe-ec---CCHH
Q 027287 33 KSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYD--GGRHVIGVIPKTLMPREITGETVGEVK-PV---ADMH 106 (225)
Q Consensus 33 ~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~--aGG~viGIiP~~~~~~e~~~~~~~~~~-~~---~~m~ 106 (225)
.+...+.+.++...|.+++..++-=+++ -.-|++-..+. ..-.|+||+|......+...+...-++ .. .+-.
T Consensus 49 ~e~I~~~~~~i~~~l~~~~ik~lVIACN--TASa~al~~LR~~~~iPVvGviPaik~A~~~t~~~~IgViaT~~Tvks~~ 126 (269)
T COG0796 49 EEEIRERTLEIVDFLLERGIKALVIACN--TASAVALEDLREKFDIPVVGVIPAIKPAVALTRNGRIGVIATPATVKSNA 126 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecc--hHHHHHHHHHHHhCCCCEEEeccchHHHHHhccCCeEEEEeccchhccHH
Confidence 3566788889999999999988888886 33444433333 256899999976543333333321111 11 2224
Q ss_pred HHHHHHHhhCCEEEEecCCccc----------HHHHHHHHHHHHh---CCCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 027287 107 QRKAEMAKHSDAFIALPGGYGT----------LEELLEVITWAQL---GIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFI 173 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpGG~GT----------L~Ei~~a~~~~ql---g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi 173 (225)
.|+.+---.+|..|-.-|..+= -....+++. ..+ ...+.=.++|+.+ +|--+...+++...
T Consensus 127 y~~~i~~~~~~~~V~~la~p~lV~lvE~g~~~~~~~~~~l~-~~l~~~~~~~~DtlVLGCT-HyPll~~~i~~~~~---- 200 (269)
T COG0796 127 YRDLIARFAPDCEVESLACPELVPLVEEGIRGGPVALEVLK-EYLPPLQEAGPDTLVLGCT-HYPLLKPEIQQVLG---- 200 (269)
T ss_pred HHHHHHHhCCCCEEEEecCcchHHHHhcccccCHHHHHHHH-HHhcchhccCCCEEEEeCc-CcHHHHHHHHHHhC----
Confidence 5555544567776665552211 011111111 111 1122346677765 66666666665443
Q ss_pred CccccCcEEEcCCHHHHHHHHHhhcCC
Q 027287 174 SPNARHIIVSAPNAKELMNKMEEYFPQ 200 (225)
Q Consensus 174 ~~~~~~~i~~~~d~ee~~~~l~~~~~~ 200 (225)
+.+.++|+.+++.+.+.++...
T Consensus 201 -----~~v~lids~~~~a~~~~~~L~~ 222 (269)
T COG0796 201 -----EHVALIDSGAETARRLARLLSP 222 (269)
T ss_pred -----CCceEeCCHHHHHHHHHHHhCh
Confidence 3578899999999988887544
No 74
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=55.24 E-value=19 Score=28.63 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=27.2
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
|++|+||-+|..++.. ..|+.++..|...|+.+.
T Consensus 1 M~ki~Ivy~S~tGnTe---~vA~~i~~~l~~~~~~~~ 34 (151)
T COG0716 1 MMKILIVYGSRTGNTE---KVAEIIAEELGADGFEVD 34 (151)
T ss_pred CCeEEEEEEcCCCcHH---HHHHHHHHHhccCCceEE
Confidence 5789998899998644 468889999988887773
No 75
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=55.24 E-value=79 Score=28.42 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=35.6
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCC------------------------------eEEEcCCCccHHHH
Q 027287 17 SKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNI------------------------------DLVYGGGSVGLMGL 66 (225)
Q Consensus 17 ~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~------------------------------~lv~GGg~~GlM~a 66 (225)
+++++|+|+. +.. .+...+.+.++.++|.++|+ .+++-||. |-|--
T Consensus 3 ~~~~~v~iv~--~~~-~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~ 78 (291)
T PRK02155 3 SQFKTVALIG--RYQ-TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTMLG 78 (291)
T ss_pred CcCCEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHHH
Confidence 4466788883 222 23444556666666654432 34455664 77776
Q ss_pred HHHHHHhcCCeEEEE
Q 027287 67 ISQAVYDGGRHVIGV 81 (225)
Q Consensus 67 ~a~gA~~aGG~viGI 81 (225)
+++.....+-.++||
T Consensus 79 ~~~~~~~~~~pilGI 93 (291)
T PRK02155 79 IGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHhcCCCCCEEEE
Confidence 666665566677777
No 76
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=55.06 E-value=54 Score=25.90 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 38 DAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 38 ~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
..+.=+...|...||.+++-|.. =--+.+++.|.+.+..+||+
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 34556777888899999999875 66788889999999999999
No 77
>PRK13059 putative lipid kinase; Reviewed
Probab=55.02 E-value=32 Score=30.60 Aligned_cols=33 Identities=30% Similarity=0.726 Sum_probs=23.3
Q ss_pred hCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEE
Q 027287 115 HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 151 (225)
Q Consensus 115 ~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill 151 (225)
..| .|+.-||=||++|+...+. +.+ .+.|+.++
T Consensus 56 ~~d-~vi~~GGDGTv~evv~gl~--~~~-~~~~lgvi 88 (295)
T PRK13059 56 SYK-YILIAGGDGTVDNVVNAMK--KLN-IDLPIGIL 88 (295)
T ss_pred CCC-EEEEECCccHHHHHHHHHH--hcC-CCCcEEEE
Confidence 345 5667899999999997773 222 24688877
No 78
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=55.01 E-value=46 Score=25.91 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHh----CCC-eEEEcCC---CccHHHHHHHHHHhcCCe
Q 027287 37 KDAAIELGKELVA----RNI-DLVYGGG---SVGLMGLISQAVYDGGRH 77 (225)
Q Consensus 37 ~~~A~~lG~~LA~----~G~-~lv~GGg---~~GlM~a~a~gA~~aGG~ 77 (225)
.+.|+.+|++||+ .|. .++++=+ ..|-+.|+++++.++|-.
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~ 118 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLE 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCC
Confidence 3577888888876 686 4555432 268999999999998854
No 79
>PRK06703 flavodoxin; Provisional
Probab=54.92 E-value=57 Score=25.62 Aligned_cols=14 Identities=7% Similarity=0.358 Sum_probs=6.8
Q ss_pred HHHHHHhcCCeEEE
Q 027287 67 ISQAVYDGGRHVIG 80 (225)
Q Consensus 67 ~a~gA~~aGG~viG 80 (225)
+.+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 33333445665554
No 80
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=54.50 E-value=1.5e+02 Score=25.88 Aligned_cols=126 Identities=22% Similarity=0.300 Sum_probs=59.8
Q ss_pred EEEcCCCccHHHHH---HHHHHhcC-CeEEEEeCCccccC-CCCCCCCceEeecCCH--HHHHHHHHhhCCEEEEecCCc
Q 027287 54 LVYGGGSVGLMGLI---SQAVYDGG-RHVIGVIPKTLMPR-EITGETVGEVKPVADM--HQRKAEMAKHSDAFIALPGGY 126 (225)
Q Consensus 54 lv~GGg~~GlM~a~---a~gA~~aG-G~viGIiP~~~~~~-e~~~~~~~~~~~~~~m--~~Rk~~mv~~sDa~IvlpGG~ 126 (225)
+|.||.. +-.+|+ +++|+.+| |.|.-+.|....+. ....++. ++..-.. ...-....+..|++++=|| .
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~~~~~Pe~--m~~~~~~~~~~~~~~~~~~~~av~iGPG-l 77 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPVIASYSPEA--MVSPLPSDEDVEILELLEKADAVVIGPG-L 77 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHHHHHTTTS--EEEETTHCCHHHHHHHHCH-SEEEE-TT--
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHHHhCCcee--EEecccchhhhhhHhhhccCCEEEeecC-C
Confidence 4567754 666665 66777776 67766666543211 0011111 1111111 1122334577899888887 3
Q ss_pred ccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 027287 127 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEY 197 (225)
Q Consensus 127 GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~ 197 (225)
|+-++..+.+.... ...+| +++|-++.| . +.... ......++++..+.|.-+.+...
T Consensus 78 g~~~~~~~~~~~~~--~~~~p-~VlDADaL~-----~---l~~~~---~~~~~~~IlTPH~gE~~rL~~~~ 134 (242)
T PF01256_consen 78 GRDEETEELLEELL--ESDKP-LVLDADALN-----L---LAENP---KKRNAPVILTPHPGEFARLLGKS 134 (242)
T ss_dssp SSSHHHHHHHHHHH--HHCST-EEEECHHHH-----C---HHHCC---CCSSSCEEEE-BHHHHHHHHTTT
T ss_pred CCchhhHHHHHHHH--hhcce-EEEehHHHH-----H---HHhcc---ccCCCCEEECCCHHHHHHHhCCc
Confidence 44444332221111 13578 456765322 1 11111 33456688899999988777553
No 81
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=54.41 E-value=1.7e+02 Score=26.44 Aligned_cols=131 Identities=20% Similarity=0.230 Sum_probs=66.7
Q ss_pred hCCCeEEEcCCC--ccHHHHHHHHHHhcC-CeEEEEeCCccccCCCCCCCCceEeec--CCHH-HHHHHHHhhCCEEEEe
Q 027287 49 ARNIDLVYGGGS--VGLMGLISQAVYDGG-RHVIGVIPKTLMPREITGETVGEVKPV--ADMH-QRKAEMAKHSDAFIAL 122 (225)
Q Consensus 49 ~~G~~lv~GGg~--~GlM~a~a~gA~~aG-G~viGIiP~~~~~~e~~~~~~~~~~~~--~~m~-~Rk~~mv~~sDa~Ivl 122 (225)
++|..+|-||.. .|--.-++.+|..+| |.|.-..|...... . .....++++. .+.. ..+..+.+..|++++=
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~-~-~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avviG 108 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASA-L-KSYLPELMVIEVEGKKLLEERELVERADAVVIG 108 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhh-H-hhcCcceeEeecccchhhHHhhhhccCCEEEEC
Confidence 368888888863 466666778888876 44444445432111 0 1111122221 2222 2233566788887765
Q ss_pred cCCcccHHHHHHHHHHHHhCCCC-CcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHH
Q 027287 123 PGGYGTLEELLEVITWAQLGIHD-KPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKME 195 (225)
Q Consensus 123 pGG~GTL~Ei~~a~~~~qlg~~~-kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~ 195 (225)
| |.|.-+|..++....- ... +|+|+ +.++.+ .+.. .... .....++++..+.|..+.+.
T Consensus 109 p-GlG~~~~~~~~~~~~l--~~~~~p~Vi-DADaL~-----~la~---~~~~--~~~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 109 P-GLGRDAEGQEALKELL--SSDLKPLVL-DADALN-----LLAE---LPDL--LDERKVVLTPHPGEFARLLG 168 (284)
T ss_pred C-CCCCCHHHHHHHHHHH--hccCCCEEE-eCcHHH-----HHHh---Cccc--ccCCcEEECCCHHHHHHhcC
Confidence 4 5666666555542211 122 89876 555432 1111 1111 11122777888887776654
No 82
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=54.02 E-value=22 Score=31.17 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=28.5
Q ss_pred cccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHh
Q 027287 14 NNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVA 49 (225)
Q Consensus 14 ~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~ 49 (225)
.|....++|||||||=++.+-.+...|+++.+.+.-
T Consensus 16 ~~~~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~l 51 (243)
T PRK06973 16 PPLARPRRIGILGGTFDPIHDGHLALARRFADVLDL 51 (243)
T ss_pred CCCCCCceEEEECCCCCCCcHHHHHHHHHHHHHcCC
Confidence 455566789999999988888888888888887754
No 83
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=53.68 E-value=22 Score=27.32 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=24.2
Q ss_pred HHhhCCE--EEEecCCcccHHHHHHHHHHHHhCCC-CCcEEEEe
Q 027287 112 MAKHSDA--FIALPGGYGTLEELLEVITWAQLGIH-DKPVGLLN 152 (225)
Q Consensus 112 mv~~sDa--~IvlpGG~GTL~Ei~~a~~~~qlg~~-~kPiill~ 152 (225)
.....+. .|++-||=||++|+...+. +.... ..|+.++-
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l~--~~~~~~~~~l~iiP 89 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGLM--GSDREDKPPLGIIP 89 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHHC--TSTSSS--EEEEEE
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHHh--hcCCCccceEEEec
Confidence 3444544 8888899999999987772 11111 12777763
No 84
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=53.20 E-value=97 Score=28.29 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=42.1
Q ss_pred HHHHHHhhCC-EEEEecCCcccHHHHHHHHHHHHhCC-CCCcEEEEe---CCCCchHHHHHHHHHH---HcCCCCccccC
Q 027287 108 RKAEMAKHSD-AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN---VDGYYNSLLTFIDKAV---EEGFISPNARH 179 (225)
Q Consensus 108 Rk~~mv~~sD-a~IvlpGG~GTL~Ei~~a~~~~qlg~-~~kPiill~---~~g~w~~l~~~l~~~~---~~gfi~~~~~~ 179 (225)
+-.-+++... ++|+|.||.|| .+|. .+||.+=+. ..-+.+-..+.+..+. .+.+-......
T Consensus 6 ~G~~~i~~~~va~viLaGG~GT-----------RLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip 74 (323)
T cd04193 6 AGLKAIAEGKVAVLLLAGGQGT-----------RLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIP 74 (323)
T ss_pred HhHHHHhcCCEEEEEECCCccc-----------ccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCce
Confidence 3344555556 78999999999 4453 367777554 2236666666665432 11111111223
Q ss_pred cEEEcC--CHHHHHHHHHh
Q 027287 180 IIVSAP--NAKELMNKMEE 196 (225)
Q Consensus 180 ~i~~~~--d~ee~~~~l~~ 196 (225)
.++.++ +-++..+++++
T Consensus 75 ~~imtS~~t~~~t~~~~~~ 93 (323)
T cd04193 75 WYIMTSEATHEETRKFFKE 93 (323)
T ss_pred EEEEcChhHhHHHHHHHHh
Confidence 344343 35566667765
No 85
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=53.08 E-value=14 Score=32.10 Aligned_cols=38 Identities=32% Similarity=0.607 Sum_probs=29.0
Q ss_pred HHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchH
Q 027287 110 AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 159 (225)
Q Consensus 110 ~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~ 159 (225)
.-+++.||++|.+.+.+| +||+ .++||+++++.. ||+.
T Consensus 194 ~~Ll~~s~~VvtinStvG-----lEAl------l~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 194 YELLEQSDAVVTINSTVG-----LEAL------LHGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHHhCCEEEEECCHHH-----HHHH------HcCCceEEecCc-ccCC
Confidence 357899999999999887 3444 378999999754 6653
No 86
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=52.58 E-value=85 Score=26.20 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=41.3
Q ss_pred HHHHHHHhhCCEEEEecC--CcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEc
Q 027287 107 QRKAEMAKHSDAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSA 184 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpG--G~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 184 (225)
+....+...||++|.-.. |+|+ =+.|+++ .++|++..+..+....+.. ......++-.
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~~~~~~~------------~~~~g~~~~~ 303 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPM--VLLEAMA------FGLPVISFDCPTGPSEIIE------------DGVNGLLVPN 303 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCH--HHHHHHH------cCCCEEEecCCCchHhhhc------------cCcceEEeCC
Confidence 334456678998775432 3332 2555553 6899998765443332221 1112233445
Q ss_pred CCHHHHHHHHHhhcC
Q 027287 185 PNAKELMNKMEEYFP 199 (225)
Q Consensus 185 ~d~ee~~~~l~~~~~ 199 (225)
.|++++.+.|.+...
T Consensus 304 ~~~~~~~~~i~~ll~ 318 (348)
T cd03820 304 GDVEALAEALLRLME 318 (348)
T ss_pred CCHHHHHHHHHHHHc
Confidence 578888888888754
No 87
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=52.48 E-value=36 Score=30.96 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=28.3
Q ss_pred hCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027287 115 HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 153 (225)
Q Consensus 115 ~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~ 153 (225)
..|+|||..| .-||+|...++.+.- . .+||||+-+.
T Consensus 78 ~~dGiVVtHG-TDTmeeTA~~L~~~l-~-~~kPVVlTGA 113 (323)
T cd00411 78 SYDGFVITHG-TDTMEETAYFLSLTL-E-NDKPVVLTGS 113 (323)
T ss_pred hcCcEEEEcC-cccHHHHHHHHHHHh-c-CCCCEEEECC
Confidence 4799999875 899999998887533 2 3899999753
No 88
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=52.15 E-value=19 Score=27.70 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=27.7
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
++|+|++|......+.=...|+.+.+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 467775555555566666889999999999999988
No 89
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=51.91 E-value=36 Score=31.20 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=34.2
Q ss_pred hhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC-----CCchHHHHHHH
Q 027287 114 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLTFID 165 (225)
Q Consensus 114 ~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~ 165 (225)
+..|+|||+-| .-||+|-+.++.+.- . .+||||+-+.- --.|...+++.
T Consensus 76 ~~~dG~VVtHG-TDTme~TA~~Ls~~l-~-~~kPVVlTGsmrp~~~~~sDg~~NL~~ 129 (336)
T TIGR00519 76 DDYDGFVITHG-TDTMAYTAAALSFML-E-TPKPVVFTGAQRSSDRPSSDAALNLLC 129 (336)
T ss_pred hcCCeEEEccC-CchHHHHHHHHHHHc-C-CCCCEEEECCCCCCCCcCcchHHHHHH
Confidence 45899999985 789999998886532 2 38999997641 23455555444
No 90
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=51.86 E-value=1.8e+02 Score=26.32 Aligned_cols=83 Identities=16% Similarity=0.047 Sum_probs=38.4
Q ss_pred CCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCC-CCCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccH
Q 027287 51 NIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREIT-GETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTL 129 (225)
Q Consensus 51 G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~-~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL 129 (225)
...+|.|+|..|++ +..-|...|.+++.+........+.. .-..+.++...+- ++-..+....|.+|=.-|+..|+
T Consensus 185 ~~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~-~~~~~~~~~~D~vid~~g~~~~~ 261 (360)
T PLN02586 185 KHLGVAGLGGLGHV--AVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDP-EKMKAAIGTMDYIIDTVSAVHAL 261 (360)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCH-HHHHhhcCCCCEEEECCCCHHHH
Confidence 34556665544444 55567777888877643321111110 0111222222221 11111112357777777766677
Q ss_pred HHHHHHH
Q 027287 130 EELLEVI 136 (225)
Q Consensus 130 ~Ei~~a~ 136 (225)
++.+..+
T Consensus 262 ~~~~~~l 268 (360)
T PLN02586 262 GPLLGLL 268 (360)
T ss_pred HHHHHHh
Confidence 6665443
No 91
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=51.85 E-value=1.7e+02 Score=25.94 Aligned_cols=108 Identities=22% Similarity=0.356 Sum_probs=58.0
Q ss_pred HHHHHHhC--CCeEEEcCCCccHHHHH---HHHHHhcC--CeEEEEeCCcc--------ccCCCCCCCCceEeecC----
Q 027287 43 LGKELVAR--NIDLVYGGGSVGLMGLI---SQAVYDGG--RHVIGVIPKTL--------MPREITGETVGEVKPVA---- 103 (225)
Q Consensus 43 lG~~LA~~--G~~lv~GGg~~GlM~a~---a~gA~~aG--G~viGIiP~~~--------~~~e~~~~~~~~~~~~~---- 103 (225)
.+-.+|+. ...+|+||=+ |+-+-+ .+.+.+.| ..=+-|+|..- ....+.|+ +..+-..+
T Consensus 64 ~AielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hD-F~~ISLSDlLtP 141 (249)
T COG1010 64 EAIELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHD-FCVISLSDLLTP 141 (249)
T ss_pred HHHHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccc-eEEEEhHhcCCc
Confidence 44455555 4567888865 875543 33333344 23356677642 11222232 22122111
Q ss_pred -CHHHHHHHHHhhCCEEEEe--cCCcc---cHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027287 104 -DMHQRKAEMAKHSDAFIAL--PGGYG---TLEELLEVITWAQLGIHDKPVGLLNVD 154 (225)
Q Consensus 104 -~m~~Rk~~mv~~sDa~Ivl--pGG~G---TL~Ei~~a~~~~qlg~~~kPiill~~~ 154 (225)
..-++.......+|.+|+| |=+-+ -+.+.++++ .+...-+.||++....
T Consensus 142 we~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil--~~~r~~~tpVgivrna 196 (249)
T COG1010 142 WEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEIL--REHRSPDTPVGIVRNA 196 (249)
T ss_pred HHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHH--HHhcCCCCcEEEEecC
Confidence 2235555667889988888 66666 455555554 2433457899998653
No 92
>PRK12359 flavodoxin FldB; Provisional
Probab=51.65 E-value=77 Score=26.27 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=21.4
Q ss_pred CcceEEEEeCCCC-CCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 18 KFNRICVFCGSSA-GKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 18 ~~~~V~Vfggs~~-~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
+-++|+|||.... +..+.|.+.+..|.+.|.+.|..+|
T Consensus 78 ~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~iv 116 (172)
T PRK12359 78 EGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFV 116 (172)
T ss_pred CCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEE
Confidence 3456677753222 1224456666667777766666666
No 93
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=51.45 E-value=30 Score=30.63 Aligned_cols=43 Identities=21% Similarity=0.361 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCC-eEEEcCCCccHHHHHHHHHHhcC-C--eEEEEeCC
Q 027287 41 IELGKELVARNI-DLVYGGGSVGLMGLISQAVYDGG-R--HVIGVIPK 84 (225)
Q Consensus 41 ~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~aG-G--~viGIiP~ 84 (225)
.++++.+++.++ .||.-|| .|-...+..|..+.+ + ..+||+|.
T Consensus 42 ~~~a~~~~~~~~d~vv~~GG-DGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 42 QRYVAEALALGVSTVIAGGG-DGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHHcCCCEEEEEcC-ChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 445555555553 4445556 599999999988654 2 25999995
No 94
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=50.42 E-value=1.3e+02 Score=26.75 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=34.9
Q ss_pred HHHHHHHHh-----hCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHc
Q 027287 106 HQRKAEMAK-----HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEE 170 (225)
Q Consensus 106 ~~Rk~~mv~-----~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~ 170 (225)
.+|-+-|.+ ..|+++..-||+|+.. +..-+.|.++..++|+ ++ || +++-.+.-.+..+
T Consensus 48 ~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~r-lL~~ld~~~~~~~pK~--~i---Gy-SDiTaL~~~l~~~ 110 (282)
T cd07025 48 EERAADLNAAFADPEIKAIWCARGGYGANR-LLPYLDYDLIRANPKI--FV---GY-SDITALHLALYAK 110 (282)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCCcCCHHH-hhhhCCHHHHhhCCeE--EE---Ee-cHHHHHHHHHHHh
Confidence 455555543 4689999999999965 5555667666544444 44 34 3444443334433
No 95
>PRK12361 hypothetical protein; Provisional
Probab=49.61 E-value=33 Score=33.32 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCC-eEEEcCCCccHHHHHHHHHHhcCCeEEEEeCC
Q 027287 40 AIELGKELVARNI-DLVYGGGSVGLMGLISQAVYDGGRHVIGVIPK 84 (225)
Q Consensus 40 A~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~ 84 (225)
|.++++..+++|+ .||..||. |--..+..+.... +..+||+|.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~ 329 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPL 329 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecC
Confidence 4556666655654 55566664 9888888887654 467999995
No 96
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=49.13 E-value=1.9e+02 Score=25.50 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=40.8
Q ss_pred HHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 027287 107 QRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPN 186 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 186 (225)
..-..+...||++|.=+| |..+|.+ ..++|+|.++..+.+.. .++.|. .+.+.+|
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea~---------~~g~PvI~~~~~~~~~~-------~~~~g~-------~~~~~~~ 323 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEAS---------FLGVPVLNLRDRTERPE-------TVESGT-------NVLVGTD 323 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhhh---------hcCCCEEeeCCCCccch-------hhheee-------EEecCCC
Confidence 344556778999985555 5444443 24799999864332222 222231 1233457
Q ss_pred HHHHHHHHHhhcCC
Q 027287 187 AKELMNKMEEYFPQ 200 (225)
Q Consensus 187 ~ee~~~~l~~~~~~ 200 (225)
++++.+.+.+....
T Consensus 324 ~~~i~~~i~~ll~~ 337 (363)
T cd03786 324 PEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999988887653
No 97
>PRK06756 flavodoxin; Provisional
Probab=48.25 E-value=32 Score=27.03 Aligned_cols=32 Identities=9% Similarity=0.250 Sum_probs=20.8
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDL 54 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~l 54 (225)
++|.|+.+|..++.. +.|+.+++.|.+.|+.+
T Consensus 2 mkv~IiY~S~tGnTe---~vA~~ia~~l~~~g~~v 33 (148)
T PRK06756 2 SKLVMIFASMSGNTE---EMADHIAGVIRETENEI 33 (148)
T ss_pred ceEEEEEECCCchHH---HHHHHHHHHHhhcCCeE
Confidence 467777677777533 45677777776666554
No 98
>PRK13054 lipid kinase; Reviewed
Probab=48.23 E-value=37 Score=30.16 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCC-eEEEcCCCccHHHHHHHHHHhcC-C--eEEEEeCC
Q 027287 41 IELGKELVARNI-DLVYGGGSVGLMGLISQAVYDGG-R--HVIGVIPK 84 (225)
Q Consensus 41 ~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~aG-G--~viGIiP~ 84 (225)
.++++.+++.++ .||..||. |-...++.+....+ + ..+||+|.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 344444444444 45566674 98888888877642 2 46999995
No 99
>PRK13057 putative lipid kinase; Reviewed
Probab=48.11 E-value=46 Score=29.26 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=23.3
Q ss_pred hCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEe
Q 027287 115 HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 152 (225)
Q Consensus 115 ~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~ 152 (225)
..| .|+.-||=||++|+...+. ..+.|+.++-
T Consensus 50 ~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP 81 (287)
T PRK13057 50 GVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILP 81 (287)
T ss_pred CCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEEC
Confidence 345 4667899999999987762 1357888873
No 100
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=47.62 E-value=39 Score=28.49 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=51.9
Q ss_pred hCCEEEEecCCcccHHHHHHHHHH-------HHhCCCCCcEEEEeCCCCchHH--HHHHHHHHHcCC-CCccccCcEEEc
Q 027287 115 HSDAFIALPGGYGTLEELLEVITW-------AQLGIHDKPVGLLNVDGYYNSL--LTFIDKAVEEGF-ISPNARHIIVSA 184 (225)
Q Consensus 115 ~sDa~IvlpGG~GTL~Ei~~a~~~-------~qlg~~~kPiill~~~g~w~~l--~~~l~~~~~~gf-i~~~~~~~i~~~ 184 (225)
.+|++|+.|-..+|+.-+..=++- ...-..++|+++.-. .+|..- .+.++.+.+.|+ +=+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~-~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR-ETPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec-cccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 489999999999999877532110 011125799999864 577643 444555666664 222233445556
Q ss_pred CCHHHHHHHHHh
Q 027287 185 PNAKELMNKMEE 196 (225)
Q Consensus 185 ~d~ee~~~~l~~ 196 (225)
.+.+|+++++..
T Consensus 157 ~~~~~~~~~~v~ 168 (185)
T PRK06029 157 QTLEDMVDQTVG 168 (185)
T ss_pred CCHHHHHHHHHH
Confidence 899999888765
No 101
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.29 E-value=1.5e+02 Score=23.74 Aligned_cols=41 Identities=15% Similarity=0.069 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 40 AIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 40 A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
..-++..|-.+||.+++-|- .=-.+.+.+.|.+.+-..||+
T Consensus 18 k~iv~~~l~~~GfeVi~LG~-~v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGV-LSPQEEFIKAAIETKADAILV 58 (134)
T ss_pred HHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEE
Confidence 35567778889999999986 478899999999999999999
No 102
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=47.06 E-value=41 Score=32.42 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCC-eEEEcCCCccHHHHHHHHHHhcC------CeEEEEeCC
Q 027287 40 AIELGKELVARNI-DLVYGGGSVGLMGLISQAVYDGG------RHVIGVIPK 84 (225)
Q Consensus 40 A~~lG~~LA~~G~-~lv~GGg~~GlM~a~a~gA~~aG------G~viGIiP~ 84 (225)
|+++++.++..++ .||.-|| .|..-.+..|-.... ...+||||.
T Consensus 157 A~~la~~~~~~~~D~VV~vGG-DGTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSG-DGILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcC-CCHHHHHHHHHhhCccccccccCceEEecC
Confidence 4556666655555 4556667 499999999887542 356999995
No 103
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=46.76 E-value=54 Score=29.24 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=46.9
Q ss_pred HHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHh-CCCCCcEEEEeCCCC-chHHHHHHHHHHHcCCCCccccCcEEE
Q 027287 106 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGY-YNSLLTFIDKAVEEGFISPNARHIIVS 183 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~ql-g~~~kPiill~~~g~-w~~l~~~l~~~~~~gfi~~~~~~~i~~ 183 (225)
..|....++.+|.+|+ +||=..+.-++.+.+. ..++.|+|++|.+.. +++. -.+.+
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~------------------~~~~i 262 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL------------------LTLKV 262 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc------------------eeEEE
Confidence 4566667788999888 5555555433332222 235679999997521 1110 13677
Q ss_pred cCCHHHHHHHHHhhcCCcc
Q 027287 184 APNAKELMNKMEEYFPQHE 202 (225)
Q Consensus 184 ~~d~ee~~~~l~~~~~~~~ 202 (225)
..+..+++..|.+......
T Consensus 263 ~g~~~evL~~l~~~l~~~~ 281 (285)
T PRK05333 263 EASCAQALAALVARLGLAG 281 (285)
T ss_pred eCCHHHHHHHHHHHhCCCC
Confidence 8899999999977654433
No 104
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=46.39 E-value=1.8e+02 Score=26.14 Aligned_cols=92 Identities=22% Similarity=0.215 Sum_probs=51.8
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEe
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVK 100 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~ 100 (225)
+|+|+.-|+...+ .+.+.-.+.-+.|.+.|+.++.|-.- ....+ .
T Consensus 2 ~I~ivAPS~~~~~-~~~~~~~~~~~~L~~~G~~v~~~~~~-----------~~~~~-----------------------~ 46 (308)
T cd07062 2 TIAVVSPSSGIPG-ELPHRLERAKKRLENLGFEVVEGPNA-----------LKGDK-----------------------Y 46 (308)
T ss_pred eEEEEeCCCCCcc-cCHHHHHHHHHHHHhCCCEEEEeccc-----------ccccc-----------------------c
Confidence 6888877776432 11122233345566779999887421 11000 0
Q ss_pred ecCCHHHHHHHHHh-----hCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcE
Q 027287 101 PVADMHQRKAEMAK-----HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPV 148 (225)
Q Consensus 101 ~~~~m~~Rk~~mv~-----~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPi 148 (225)
...+=.+|-+-+.+ ..||++..-||+|+.. +..-+.+..+..++|++
T Consensus 47 ~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~r-lL~~lD~~~i~~~PK~f 98 (308)
T cd07062 47 LSASPEERAEELMAAFADPSIKAIIPTIGGDDSNE-LLPYLDYELIKKNPKIF 98 (308)
T ss_pred ccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHhh-hhhhcCHHHHhhCCCEE
Confidence 11222444444443 3589999999999854 66666666665555543
No 105
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=46.26 E-value=1.1e+02 Score=26.53 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=36.8
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEe
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVI 82 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIi 82 (225)
...++.|+.. |+ +.|+++++.|-.+|..+|+..+ .| ..+.++|.+.|..+||+-
T Consensus 154 v~~~~~g~~~--D~---~~a~~~a~~l~~~G~DvI~~~~-~~--~g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 154 VKVIWTGSWF--DP---AKEKEAALALIDQGADVIYQHT-DS--PGVIQAAEEKGVYAIGYV 207 (258)
T ss_pred EEEEEecCCC--Cc---HHHHHHHHHHHHCCCcEEEecC-CC--hHHHHHHHHhCCEEEeec
Confidence 3444555443 33 3567788888889999998875 23 245566778899999983
No 106
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=46.21 E-value=17 Score=32.40 Aligned_cols=30 Identities=33% Similarity=0.653 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCeEEEcCCCccHHHHHHHHHHh
Q 027287 42 ELGKELVARNIDLVYGGGSVGLMGLISQAVYD 73 (225)
Q Consensus 42 ~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~ 73 (225)
+|+|.|+.+...||.||| |.=++++-|+++
T Consensus 1 rlar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 1 RLARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred ChhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 378899999999998886 787888777775
No 107
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=46.00 E-value=47 Score=29.67 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=31.4
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCC
Q 027287 17 SKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGG 59 (225)
Q Consensus 17 ~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg 59 (225)
.+++-|++++|..... .+.+...++++.|-++++-|++.|+
T Consensus 92 G~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC 132 (258)
T cd00587 92 GTIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC 132 (258)
T ss_pred CCCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch
Confidence 4788899988777543 3334567899999999999998875
No 108
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=45.94 E-value=1.3e+02 Score=25.78 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=44.4
Q ss_pred HHHHHHHHhhCCEEEEec----CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcE
Q 027287 106 HQRKAEMAKHSDAFIALP----GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHII 181 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~Ivlp----GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i 181 (225)
.+....+...||++|... .|+|. =+.|++. .++|++.-+..+..+.+.. ......+
T Consensus 254 ~~~~~~~~~~ad~~i~ps~~~~e~~g~--~~~Ea~~------~g~Pvi~~~~~~~~~~i~~------------~~~~g~~ 313 (357)
T cd03795 254 DEEKAALLAACDVFVFPSVERSEAFGI--VLLEAMA------FGKPVISTEIGTGGSYVNL------------HGVTGLV 313 (357)
T ss_pred HHHHHHHHHhCCEEEeCCcccccccch--HHHHHHH------cCCCEEecCCCCchhHHhh------------CCCceEE
Confidence 344566778899987652 35553 1445553 6899998776544332211 0112334
Q ss_pred EEcCCHHHHHHHHHhhcC
Q 027287 182 VSAPNAKELMNKMEEYFP 199 (225)
Q Consensus 182 ~~~~d~ee~~~~l~~~~~ 199 (225)
+-.+|++++.+.|.+...
T Consensus 314 ~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 314 VPPGDPAALAEAIRRLLE 331 (357)
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 445789999888887654
No 109
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=45.93 E-value=1.7e+02 Score=25.96 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=17.8
Q ss_pred CCeEEEcCCCccHHHHHHHHHHhcCC-eEEEE
Q 027287 51 NIDLVYGGGSVGLMGLISQAVYDGGR-HVIGV 81 (225)
Q Consensus 51 G~~lv~GGg~~GlM~a~a~gA~~aGG-~viGI 81 (225)
...+|+|+|+.|++ +..-|+..|. +++.+
T Consensus 171 ~~VlV~G~G~vG~~--aiqlak~~G~~~Vi~~ 200 (343)
T PRK09880 171 KRVFVSGVGPIGCL--IVAAVKTLGAAEIVCA 200 (343)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCcEEEEE
Confidence 45677877655554 3455666676 56666
No 110
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=45.91 E-value=1.1e+02 Score=27.25 Aligned_cols=43 Identities=30% Similarity=0.635 Sum_probs=26.1
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHH-----HHHHHHHcC
Q 027287 124 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLT-----FIDKAVEEG 171 (225)
Q Consensus 124 GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~-----~l~~~~~~g 171 (225)
.|. |++.+++.+.-.. ..++.|++++ +||+++.. |++.+.+.|
T Consensus 72 ~g~-~~~~~~~~~~~~r-~~~~~p~vlm---~Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 72 QGI-NLNKILSILSEVN-GEIKAPIVIF---TYYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred cCC-CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhCHHHHHHHHHHcC
Confidence 343 4566666553222 2367899887 48886654 677776655
No 111
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=45.85 E-value=85 Score=28.61 Aligned_cols=83 Identities=24% Similarity=0.259 Sum_probs=40.2
Q ss_pred CCeEEEcCCCccHHHHHHHHHHhcCC-eEEEEeCCccccCCCCCC-CCceEeecC---CHHHHHHHHHh--hCCEEEEec
Q 027287 51 NIDLVYGGGSVGLMGLISQAVYDGGR-HVIGVIPKTLMPREITGE-TVGEVKPVA---DMHQRKAEMAK--HSDAFIALP 123 (225)
Q Consensus 51 G~~lv~GGg~~GlM~a~a~gA~~aGG-~viGIiP~~~~~~e~~~~-~~~~~~~~~---~m~~Rk~~mv~--~sDa~Ivlp 123 (225)
|..+|.|.||.|||- ...|...|. ++|.+ .......+.+.. .-.+.++.. .-..+...+.. -+|.+|-.-
T Consensus 170 ~~V~V~GaGpIGLla--~~~a~~~Ga~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 170 GTVVVVGAGPIGLLA--IALAKLLGASVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 468999999999997 344555564 44444 111111222222 112222211 11222222222 368888777
Q ss_pred CCcccHHHHHHHH
Q 027287 124 GGYGTLEELLEVI 136 (225)
Q Consensus 124 GG~GTL~Ei~~a~ 136 (225)
|-.-|+++...+.
T Consensus 247 G~~~~~~~ai~~~ 259 (350)
T COG1063 247 GSPPALDQALEAL 259 (350)
T ss_pred CCHHHHHHHHHHh
Confidence 7555555554443
No 112
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=45.45 E-value=51 Score=25.50 Aligned_cols=39 Identities=28% Similarity=0.412 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHh----CCCeEE---EcC-CCccHHHHHHHHHHhcCC
Q 027287 38 DAAIELGKELVA----RNIDLV---YGG-GSVGLMGLISQAVYDGGR 76 (225)
Q Consensus 38 ~~A~~lG~~LA~----~G~~lv---~GG-g~~GlM~a~a~gA~~aGG 76 (225)
+.|+.+|+.||+ .|+.=| -|| -+.|-+.|++++|.++|-
T Consensus 61 ~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~GL 107 (109)
T CHL00139 61 DASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAGL 107 (109)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhCC
Confidence 578888888886 454333 233 136899999999999874
No 113
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.21 E-value=91 Score=28.03 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=37.0
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCC----------------------------CeEEEcCCCccHHHHHHH
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARN----------------------------IDLVYGGGSVGLMGLISQ 69 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G----------------------------~~lv~GGg~~GlM~a~a~ 69 (225)
.+++|+|+. +.. +...+.+.++.++|.++| +.|+.| |. |-|--+++
T Consensus 9 ~~~~i~ii~--~~~--~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iG-GD-GT~L~aa~ 82 (287)
T PRK14077 9 NIKKIGLVT--RPN--VSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLG-GD-GTLISLCR 82 (287)
T ss_pred cCCEEEEEe--CCc--HHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEEC-CC-HHHHHHHH
Confidence 366799994 332 245677888888776544 333444 44 77766666
Q ss_pred HHHhcCCeEEEE
Q 027287 70 AVYDGGRHVIGV 81 (225)
Q Consensus 70 gA~~aGG~viGI 81 (225)
-+...+-.++||
T Consensus 83 ~~~~~~~PilGI 94 (287)
T PRK14077 83 KAAEYDKFVLGI 94 (287)
T ss_pred HhcCCCCcEEEE
Confidence 665666778887
No 114
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=45.10 E-value=49 Score=25.48 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=22.9
Q ss_pred eEEEcCCCccHHHHHHHHHHhcCC----eEEEEeCCc
Q 027287 53 DLVYGGGSVGLMGLISQAVYDGGR----HVIGVIPKT 85 (225)
Q Consensus 53 ~lv~GGg~~GlM~a~a~gA~~aGG----~viGIiP~~ 85 (225)
.|+..||. |....+..+...... ..+||+|.-
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 55556664 888888888876654 468998853
No 115
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=44.81 E-value=71 Score=28.25 Aligned_cols=69 Identities=17% Similarity=0.088 Sum_probs=38.3
Q ss_pred EEEEecCCcccHHHHHHHHHHHHhCC-CCCcEEEEe---CCCCchHHHHHHHHHHHcCCCCccccCcEEEc--CCHHHHH
Q 027287 118 AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN---VDGYYNSLLTFIDKAVEEGFISPNARHIIVSA--PNAKELM 191 (225)
Q Consensus 118 a~IvlpGG~GTL~Ei~~a~~~~qlg~-~~kPiill~---~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~--~d~ee~~ 191 (225)
|+|+|.||.|| .+|. .+||.+=+. ..-+.+-..+.+.++...- -.......++.+ .+.++..
T Consensus 2 a~viLaGG~Gt-----------RLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~-~~~~~Ip~~imts~~t~~~t~ 69 (266)
T cd04180 2 AVVLLAGGLGT-----------RLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEID-LYSCKIPEQLMNSKYTHEKTQ 69 (266)
T ss_pred EEEEECCCCcc-----------ccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHh-hcCCCCCEEEEcCchhHHHHH
Confidence 68999999999 4453 467766443 3346666666665543210 001112223222 4455778
Q ss_pred HHHHhhc
Q 027287 192 NKMEEYF 198 (225)
Q Consensus 192 ~~l~~~~ 198 (225)
++++++.
T Consensus 70 ~~l~~~~ 76 (266)
T cd04180 70 CYFEKIN 76 (266)
T ss_pred HHHHHcC
Confidence 8887754
No 116
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=44.63 E-value=1.4e+02 Score=26.72 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=44.0
Q ss_pred HHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEe-CCCCchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 027287 107 QRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN-VDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP 185 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~-~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 185 (225)
+...-....+|++|.-.-.-|.-.=+.|+++ .++||+..+ .+| ..++ +.. .....++-.+
T Consensus 249 ~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma------~G~Pvv~s~~~~g-~~ei-------v~~-----~~~G~lv~~~ 309 (359)
T PRK09922 249 EVVQQKIKNVSALLLTSKFEGFPMTLLEAMS------YGIPCISSDCMSG-PRDI-------IKP-----GLNGELYTPG 309 (359)
T ss_pred HHHHHHHhcCcEEEECCcccCcChHHHHHHH------cCCCEEEeCCCCC-hHHH-------ccC-----CCceEEECCC
Confidence 3344455678988854331122223455553 689999988 443 3222 221 2233455568
Q ss_pred CHHHHHHHHHhhcCCc
Q 027287 186 NAKELMNKMEEYFPQH 201 (225)
Q Consensus 186 d~ee~~~~l~~~~~~~ 201 (225)
|++++.+.|.+....+
T Consensus 310 d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 310 NIDEFVGKLNKVISGE 325 (359)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 9999999999876443
No 117
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=44.32 E-value=51 Score=27.51 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=48.8
Q ss_pred hCCEEEEecCCcccHHHHHHHH-----HHH--HhCCCCCcEEEEeCCCCchHH--HHHHHHHHHcCC--CCccccCcEEE
Q 027287 115 HSDAFIALPGGYGTLEELLEVI-----TWA--QLGIHDKPVGLLNVDGYYNSL--LTFIDKAVEEGF--ISPNARHIIVS 183 (225)
Q Consensus 115 ~sDa~IvlpGG~GTL~Ei~~a~-----~~~--qlg~~~kPiill~~~g~w~~l--~~~l~~~~~~gf--i~~~~~~~i~~ 183 (225)
.+|++|+.|-..+|+.-+..=+ +.. ..-..++|+++.=. ..|..- .+-++.+.+.|+ +++ ....+.-
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~-~m~~~~~~~~Nl~~L~~~G~~ii~P-~~g~~~~ 152 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPR-ETPLNSIHLENMLRLSRMGAIILPP-MPAFYTR 152 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeC-CCcCCHHHHHHHHHHHHCCCEEECC-CCcccCC
Confidence 4899999999999998876321 110 11125799998854 455432 233445666663 333 2344555
Q ss_pred cCCHHHHHHHHHh
Q 027287 184 APNAKELMNKMEE 196 (225)
Q Consensus 184 ~~d~ee~~~~l~~ 196 (225)
-.+++|+++++..
T Consensus 153 p~~~~~~~~~i~~ 165 (181)
T TIGR00421 153 PKSVEDMIDFIVG 165 (181)
T ss_pred CCCHHHHHHHHHH
Confidence 5889997776655
No 118
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=44.08 E-value=1.2e+02 Score=23.90 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=35.8
Q ss_pred CcceEEEEeCCC--CCCChHHHHHHHHHHHHHHhCCCeEEE-----cCCCccHHHHHHH
Q 027287 18 KFNRICVFCGSS--AGKKSTYKDAAIELGKELVARNIDLVY-----GGGSVGLMGLISQ 69 (225)
Q Consensus 18 ~~~~V~Vfggs~--~~~~~~~~~~A~~lG~~LA~~G~~lv~-----GGg~~GlM~a~a~ 69 (225)
+-+.|.|...+- ..+.....+..++++++|.++|..+-. +.++ |+...++.
T Consensus 67 ~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~K-GiDD~l~~ 124 (130)
T PF12965_consen 67 PGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGK-GIDDLLAA 124 (130)
T ss_pred CCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-CHhHHHHh
Confidence 345666655665 333466778889999999999988652 5665 99877654
No 119
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=44.01 E-value=1e+02 Score=26.92 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=23.0
Q ss_pred HHhhCCEEEEecCCcccHHH--HHHHHHHHH-hCCCCCcEEEEeCCCC
Q 027287 112 MAKHSDAFIALPGGYGTLEE--LLEVITWAQ-LGIHDKPVGLLNVDGY 156 (225)
Q Consensus 112 mv~~sDa~IvlpGG~GTL~E--i~~a~~~~q-lg~~~kPiill~~~g~ 156 (225)
++..+|++++ +.||+.+ +-.+....+ ...+++|+| |++.+.
T Consensus 51 ~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pvV-lDpv~~ 94 (263)
T PRK09355 51 MAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPVV-LDPVGV 94 (263)
T ss_pred HHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCEE-ECCccc
Confidence 4578899888 4555543 322222222 234578965 687654
No 120
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=43.94 E-value=52 Score=25.47 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
|.|+|++ +..+.... ..|..|++.||+.|..++
T Consensus 1 k~i~v~s-~~~g~G~t--~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWS-PKGGVGKT--TLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEEE-SSTTSSHH--HHHHHHHHHHHHTTT-EE
T ss_pred CEEEEEC-CCCCCCHH--HHHHHHHHHHHhcCCCeE
Confidence 4678884 34343333 468899999999886544
No 121
>PRK13337 putative lipid kinase; Reviewed
Probab=43.67 E-value=1.5e+02 Score=26.37 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=22.6
Q ss_pred CCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEE
Q 027287 116 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 151 (225)
Q Consensus 116 sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill 151 (225)
.| .|+.-||=||++|+...+. +.+ ...|+.++
T Consensus 58 ~d-~vvv~GGDGTl~~vv~gl~--~~~-~~~~lgii 89 (304)
T PRK13337 58 FD-LVIAAGGDGTLNEVVNGIA--EKE-NRPKLGII 89 (304)
T ss_pred CC-EEEEEcCCCHHHHHHHHHh--hCC-CCCcEEEE
Confidence 35 5778899999999997762 211 24578776
No 122
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=43.49 E-value=48 Score=30.18 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=29.6
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYG 57 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 57 (225)
|.+|+|++|......+.=...|+.+.+.|.+.||.++.-
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i 39 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPI 39 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEE
Confidence 357888666655556655688999999999999998744
No 123
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=43.43 E-value=1.2e+02 Score=25.98 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=63.0
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE--EcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCC--CCC
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV--YGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPRE--ITG 93 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv--~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e--~~~ 93 (225)
+.+.|.|+=+ . ++ +.+.++++.|.+.|+.++ |=-.+ +..++..+-..+.+...||.= +.+.+.+ ...
T Consensus 7 ~~~liaVlr~---~-~~---e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAG-TVl~~~~a~~a~ 77 (204)
T TIGR01182 7 EAKIVPVIRI---D-DV---DDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAG-TVLNPEQLRQAV 77 (204)
T ss_pred hCCEEEEEec---C-CH---HHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEE-eCCCHHHHHHHH
Confidence 3457788732 1 22 457889999999998876 33334 777777666656666778872 1111110 011
Q ss_pred CCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHH
Q 027287 94 ETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVI 136 (225)
Q Consensus 94 ~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~ 136 (225)
+--.+.++.+.+. +..+-...-..+.++| |.-|..|+..++
T Consensus 78 ~aGA~FivsP~~~-~~v~~~~~~~~i~~iP-G~~TptEi~~A~ 118 (204)
T TIGR01182 78 DAGAQFIVSPGLT-PELAKHAQDHGIPIIP-GVATPSEIMLAL 118 (204)
T ss_pred HcCCCEEECCCCC-HHHHHHHHHcCCcEEC-CCCCHHHHHHHH
Confidence 1112455555552 2222222333678888 788999999998
No 124
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=43.26 E-value=27 Score=31.64 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHh
Q 027287 41 IELGKELVARNIDLVYGGGSVGLMGLISQAVYD 73 (225)
Q Consensus 41 ~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~ 73 (225)
++|+|.|..+...||-+|| |+=+.++-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 4689999999999998886 777777777775
No 125
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=43.17 E-value=43 Score=27.86 Aligned_cols=84 Identities=17% Similarity=0.272 Sum_probs=48.8
Q ss_pred hhCCEEEEecCCcccHHHHHHHHHH-----HHhC-CCCCcEEEEeC--CCCchH--HHHHHHHHHHcCC--CCccccCc-
Q 027287 114 KHSDAFIALPGGYGTLEELLEVITW-----AQLG-IHDKPVGLLNV--DGYYNS--LLTFIDKAVEEGF--ISPNARHI- 180 (225)
Q Consensus 114 ~~sDa~IvlpGG~GTL~Ei~~a~~~-----~qlg-~~~kPiill~~--~g~w~~--l~~~l~~~~~~gf--i~~~~~~~- 180 (225)
..+|++||.|=..+|+.-+..=++- .-+. ..++|+++.-. ..+|+. ..+.++.+.+.|+ +++....+
T Consensus 75 ~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la 154 (177)
T TIGR02113 75 KKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLA 154 (177)
T ss_pred hhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCccc
Confidence 3689999999999999877632211 1111 24789998631 347763 3455566666663 33333111
Q ss_pred -----EEEcCCHHHHHHHHHhh
Q 027287 181 -----IVSAPNAKELMNKMEEY 197 (225)
Q Consensus 181 -----i~~~~d~ee~~~~l~~~ 197 (225)
.=-..+++++++.++++
T Consensus 155 ~g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 155 CGDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred CCCccccCCCCHHHHHHHHHHh
Confidence 11123677888777654
No 126
>PRK00861 putative lipid kinase; Reviewed
Probab=43.09 E-value=64 Score=28.54 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=21.9
Q ss_pred CCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEE
Q 027287 116 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 151 (225)
Q Consensus 116 sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill 151 (225)
.|. |+.-||=||++|+...+. ..+.|+.++
T Consensus 58 ~d~-vv~~GGDGTl~evv~~l~-----~~~~~lgvi 87 (300)
T PRK00861 58 AEL-IIASGGDGTLSAVAGALI-----GTDIPLGII 87 (300)
T ss_pred CCE-EEEECChHHHHHHHHHHh-----cCCCcEEEE
Confidence 354 556899999999997773 135678776
No 127
>PRK13057 putative lipid kinase; Reviewed
Probab=42.73 E-value=54 Score=28.86 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCC
Q 027287 40 AIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPK 84 (225)
Q Consensus 40 A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~ 84 (225)
|.++.+.+.+.--.|+..|| .|-...++.+.... +..+||+|.
T Consensus 40 a~~~~~~~~~~~d~iiv~GG-DGTv~~v~~~l~~~-~~~lgiiP~ 82 (287)
T PRK13057 40 LSEVIEAYADGVDLVIVGGG-DGTLNAAAPALVET-GLPLGILPL 82 (287)
T ss_pred HHHHHHHHHcCCCEEEEECc-hHHHHHHHHHHhcC-CCcEEEECC
Confidence 34455543332224555666 59999999988654 467999995
No 128
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.68 E-value=1.3e+02 Score=27.32 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=18.9
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCC
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNI 52 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~ 52 (225)
|++|+|+. +.. .+...+.+.++.++|.++|+
T Consensus 1 m~~igiv~--n~~-~~~~~~~~~~l~~~L~~~g~ 31 (305)
T PRK02649 1 MPKAGIIY--NDG-KPLAVRTAEELQDKLEAAGW 31 (305)
T ss_pred CCEEEEEE--cCC-CHHHHHHHHHHHHHHHHCCC
Confidence 45688884 222 34455677778777766554
No 129
>PRK13937 phosphoheptose isomerase; Provisional
Probab=42.65 E-value=74 Score=26.33 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCeEEEcCCCccH
Q 027287 33 KSTYKDAAIELGKELVARNIDLVYGGGSVGL 63 (225)
Q Consensus 33 ~~~~~~~A~~lG~~LA~~G~~lv~GGg~~Gl 63 (225)
.+...+.|.++.+.|.+.+...++|-|..++
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~ 51 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAA 51 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHH
Confidence 3667789999999999999999999986554
No 130
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=42.63 E-value=1.2e+02 Score=28.97 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHh-----CCCeEEEcC---CCccHHHHHHHHHHhcCC--eEEEEeCCccccCCCCCCCCceEeecCCHH-
Q 027287 38 DAAIELGKELVA-----RNIDLVYGG---GSVGLMGLISQAVYDGGR--HVIGVIPKTLMPREITGETVGEVKPVADMH- 106 (225)
Q Consensus 38 ~~A~~lG~~LA~-----~G~~lv~GG---g~~GlM~a~a~gA~~aGG--~viGIiP~~~~~~e~~~~~~~~~~~~~~m~- 106 (225)
+.|..++..+|+ .+...+||| |++=||.|+...+.+.+- +++.+....+. +.+.....-..|.
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~------~~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT------NDFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH------HHHHHHHHhhhHHH
Confidence 466777788887 467777776 334489999999999876 55555322211 0011111113332
Q ss_pred HHHHHHHhhCCEEEE-----ecCCcccHHHHHHHHHHHHhCCCCCcEEEE
Q 027287 107 QRKAEMAKHSDAFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGLL 151 (225)
Q Consensus 107 ~Rk~~mv~~sDa~Iv-----lpGG~GTL~Ei~~a~~~~qlg~~~kPiill 151 (225)
-|+.. +.|++++ +.|.-.|.+|+|..+. .+...+|-|++.
T Consensus 170 Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN--~l~~~~kqIvlt 214 (408)
T COG0593 170 FKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFN--ALLENGKQIVLT 214 (408)
T ss_pred HHHhh---ccCeeeechHhHhcCChhHHHHHHHHHH--HHHhcCCEEEEE
Confidence 22222 7787765 6788899999997774 443445655543
No 131
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=42.42 E-value=1.7e+02 Score=25.83 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=22.5
Q ss_pred EEEecCCcccHHHHHHHHHHHHhCC-CCCcEEEEe
Q 027287 119 FIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN 152 (225)
Q Consensus 119 ~IvlpGG~GTL~Ei~~a~~~~qlg~-~~kPiill~ 152 (225)
+|+.-||=||++|+...+. +.+. .+.|+.++-
T Consensus 55 ~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgiiP 87 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALA--QIRDDAAPALGLLP 87 (293)
T ss_pred EEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEEc
Confidence 6668899999999998773 2221 235788773
No 132
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=42.35 E-value=68 Score=26.38 Aligned_cols=39 Identities=3% Similarity=0.127 Sum_probs=27.4
Q ss_pred cccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 14 NNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 14 ~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
....+++.|+|. |...+.... -.|..||..||++|+.++
T Consensus 12 ~~~~~~kvI~v~-s~kgG~GKT--t~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 12 FSGAEIKVLLIT-SVKPGEGKS--TTSANIAVAFAQAGYKTL 50 (204)
T ss_pred hhcCCCcEEEEe-cCCCCCCHH--HHHHHHHHHHHhCCCeEE
Confidence 334457788887 455554444 357899999999998766
No 133
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=42.21 E-value=1.8e+02 Score=26.38 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=32.3
Q ss_pred HHHHHHhhCCEEEEecC-C--cccHHHHHHHHHHHHhCCCCCcEEEEeCCCCc
Q 027287 108 RKAEMAKHSDAFIALPG-G--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 157 (225)
Q Consensus 108 Rk~~mv~~sDa~IvlpG-G--~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w 157 (225)
+-..++..=+|+|+=|| | -+++-++..++.... ..++|+++ +.+|.|
T Consensus 94 ~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~--~~dvP~VI-DaDGL~ 143 (306)
T KOG3974|consen 94 IIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLR--GKDVPLVI-DADGLW 143 (306)
T ss_pred HHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHh--cCCCcEEE-cCCceE
Confidence 34447777889888887 2 466777777765333 34789976 778988
No 134
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=42.16 E-value=27 Score=33.22 Aligned_cols=27 Identities=44% Similarity=0.778 Sum_probs=19.8
Q ss_pred eEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 53 DLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 53 ~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
.+|-|||+.|+|.|+.-+ ++|.+|+=|
T Consensus 6 viIIGgGpAGlMaA~~aa--~~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISAA--KAGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHHh--hcCCEEEEE
Confidence 567799999999877643 467666554
No 135
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=41.94 E-value=3e+02 Score=25.75 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=59.8
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCc--------------cHHHHHHHHHHhcCCeEEEEe-CCcc
Q 027287 22 ICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSV--------------GLMGLISQAVYDGGRHVIGVI-PKTL 86 (225)
Q Consensus 22 V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~--------------GlM~a~a~gA~~aGG~viGIi-P~~~ 86 (225)
+.||-||... ....+...++.+..-+.|..++---.+. -+..-+++-|.+.|...|=+- |...
T Consensus 165 ~tvy~Gs~~E--~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~ 242 (348)
T PRK09250 165 ATIYFGSEES--RRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNN 242 (348)
T ss_pred EEEecCCHHH--HHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCCh
Confidence 4556665432 2233344455555556788877422221 156667777888899888883 3221
Q ss_pred ccCCCC-----CCCCceEeecCCHHHHHHHHHhhC---CEEEEecCCcc-cHHHHHHH
Q 027287 87 MPREIT-----GETVGEVKPVADMHQRKAEMAKHS---DAFIALPGGYG-TLEELLEV 135 (225)
Q Consensus 87 ~~~e~~-----~~~~~~~~~~~~m~~Rk~~mv~~s---Da~IvlpGG~G-TL~Ei~~a 135 (225)
...... .....+....++..+|-+..++.| ..-|++-||.= +.+|+++.
T Consensus 243 ~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~ 300 (348)
T PRK09250 243 GGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDA 300 (348)
T ss_pred hhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHH
Confidence 110000 011122233466678888888887 55555555543 55555533
No 136
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=41.77 E-value=39 Score=26.60 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=27.0
Q ss_pred HHHHHHHhhCCEEEEec--C---CcccHHHHHHHHHHHHhCCCCCcEEEE
Q 027287 107 QRKAEMAKHSDAFIALP--G---GYGTLEELLEVITWAQLGIHDKPVGLL 151 (225)
Q Consensus 107 ~Rk~~mv~~sDa~Ivlp--G---G~GTL~Ei~~a~~~~qlg~~~kPiill 151 (225)
.=.+.+++.||++||+. | ..|+.-|+-.+.+ +++||+++
T Consensus 71 ~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~------~~~~V~~~ 114 (116)
T PF09152_consen 71 DWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE------MGMPVFLY 114 (116)
T ss_dssp HHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH------TT-EEEEH
T ss_pred HHhHHHHHhcceeEEecCCCccccccHHHHHHHHHH------cCCeEEEe
Confidence 34556788999999984 5 5799999988875 68999874
No 137
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=41.71 E-value=21 Score=26.57 Aligned_cols=48 Identities=15% Similarity=0.353 Sum_probs=33.5
Q ss_pred EeCCCCchHHHHHHHHHHHcCCCCccccCcEEEc-----CCHHHHHHHHHhhcCCcc
Q 027287 151 LNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSA-----PNAKELMNKMEEYFPQHE 202 (225)
Q Consensus 151 l~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~-----~d~ee~~~~l~~~~~~~~ 202 (225)
+.++.+.+.++..+.++++ .++-.++|++- ++|+.+++.+++|+....
T Consensus 27 ~~~ee~~d~lv~hF~~ite----HP~gSDLIfYP~~~~edsPegIv~~vKeWRa~nG 79 (85)
T PF01320_consen 27 LKTEEEHDELVDHFEKITE----HPDGSDLIFYPEDGREDSPEGIVKEVKEWRASNG 79 (85)
T ss_dssp SSSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcCC----CCCCCceeeeCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 3455688888888877764 24556777664 589999999999976543
No 138
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=41.59 E-value=29 Score=32.56 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=18.5
Q ss_pred eEEEcCCCccHHHHHHHHHHhcCCeEEEEeCC
Q 027287 53 DLVYGGGSVGLMGLISQAVYDGGRHVIGVIPK 84 (225)
Q Consensus 53 ~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~ 84 (225)
.||.|||+.|++-|+ .|.++|-+|+=|-+.
T Consensus 2 VVVvGgG~aG~~AAi--~AAr~G~~VlLiE~~ 31 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAI--AAARAGAKVLLIEKG 31 (428)
T ss_dssp EEEE--SHHHHHHHH--HHHHTTS-EEEE-SS
T ss_pred EEEECccHHHHHHHH--HHHHCCCEEEEEECC
Confidence 478899998887554 455678888777443
No 139
>PRK09271 flavodoxin; Provisional
Probab=41.33 E-value=38 Score=27.23 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=21.5
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARNIDL 54 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~l 54 (225)
+|.|+.+|..++.. +.|+.+++.|.+.|+.+
T Consensus 2 kv~IvY~S~tGnTe---~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 2 RILLAYASLSGNTR---EVAREIEERCEEAGHEV 32 (160)
T ss_pred eEEEEEEcCCchHH---HHHHHHHHHHHhCCCee
Confidence 56666677777533 56788888887777765
No 140
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=41.27 E-value=1.5e+02 Score=22.87 Aligned_cols=73 Identities=22% Similarity=0.405 Sum_probs=42.8
Q ss_pred HHHHHHHHhhCCEEEEecC--CcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEE
Q 027287 106 HQRKAEMAKHSDAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVS 183 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~IvlpG--G~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 183 (225)
.+....+...||++|...- |+|+ =+.+++. .++|+|+-+.. .+..+ +.. .....++-
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~------~g~pvI~~~~~-~~~e~-------~~~-----~~~g~~~~ 141 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGL--SLLEAMA------CGCPVIASDIG-GNNEI-------IND-----GVNGFLFD 141 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHHH------TT-EEEEESST-HHHHH-------SGT-----TTSEEEES
T ss_pred ccccccccccceecccccccccccc--ccccccc------cccceeecccc-CCcee-------ecc-----ccceEEeC
Confidence 4556667788999988854 3333 3445553 57999987743 32222 222 22344555
Q ss_pred cCCHHHHHHHHHhhcC
Q 027287 184 APNAKELMNKMEEYFP 199 (225)
Q Consensus 184 ~~d~ee~~~~l~~~~~ 199 (225)
..|++++.+.|.+...
T Consensus 142 ~~~~~~l~~~i~~~l~ 157 (172)
T PF00534_consen 142 PNDIEELADAIEKLLN 157 (172)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC
Confidence 6688999998887653
No 141
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=41.26 E-value=82 Score=28.05 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=37.6
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCe--EEEEe
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRH--VIGVI 82 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~--viGIi 82 (225)
....+-|+-. |+ ..++++++.|-.+|..+|+.-. .+.-..+.+.|.+.|.. +||+-
T Consensus 163 v~~~~~gs~~--D~---~~~~~~a~~li~~GaDvI~~~a-g~~~~gv~~aa~e~g~~~~~IG~d 220 (306)
T PF02608_consen 163 VNVSYTGSFN--DP---AKAKEAAEALIDQGADVIFPVA-GGSGQGVIQAAKEAGVYGYVIGVD 220 (306)
T ss_dssp EEEEE-SSSS---H---HHHHHHHHHHHHTT-SEEEEE--CCCHHHHHHHHHHHTHETEEEEEE
T ss_pred EEEEEcCCcC--ch---HHHHHHHHHHhhcCCeEEEECC-CCCchHHHHHHHHcCCceEEEEec
Confidence 3444545433 44 4678899999999999999833 24455666788888887 99983
No 142
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=41.04 E-value=1.1e+02 Score=25.54 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=40.0
Q ss_pred HHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 027287 110 AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKE 189 (225)
Q Consensus 110 ~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee 189 (225)
.-+...||++|.-...-|.-.=+.|+++ .++|++.-+..+. .+++. ......++-.+|+++
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~------~G~Pvi~s~~~~~-~~~i~------------~~~~g~~~~~~~~~~ 318 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMA------MGRPVIATDVPGC-REAVI------------DGVNGFLVPPGDAEA 318 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHH------cCCCEEEecCCCc-hhhhh------------cCcceEEECCCCHHH
Confidence 3466789987654332222233555553 6899998765432 22211 112233445568999
Q ss_pred HHHHHHhhc
Q 027287 190 LMNKMEEYF 198 (225)
Q Consensus 190 ~~~~l~~~~ 198 (225)
+.+.|.+..
T Consensus 319 ~~~~i~~l~ 327 (359)
T cd03808 319 LADAIERLI 327 (359)
T ss_pred HHHHHHHHH
Confidence 888888754
No 143
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=40.70 E-value=52 Score=29.73 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=27.6
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
+++|+|.+|......+.=...|+.+.+.|.+.||.++
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 3478886555554455556789999999999999876
No 144
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=40.66 E-value=52 Score=29.83 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=28.5
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
+++|+|++|......+.=...|+.+.+.|.+.||.++
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 3578886665555566666889999999999999987
No 145
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=40.66 E-value=1.8e+02 Score=22.98 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 41 IELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 41 ~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
.-+...|..+||.++|-|-. =-.+.+.+.|.+.+-..+++
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILV 60 (137)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 44556666799999999853 44688888899999999998
No 146
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=40.61 E-value=74 Score=28.61 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEecCCcccHHHHHHHHHHHHhCCCCCc-EEEE
Q 027287 118 AFIALPGGYGTLEELLEVITWAQLGIHDKP-VGLL 151 (225)
Q Consensus 118 a~IvlpGG~GTL~Ei~~a~~~~qlg~~~kP-iill 151 (225)
-.|+..||=||++|+...+. .++.| +.++
T Consensus 60 D~via~GGDGTv~evingl~-----~~~~~~Lgil 89 (301)
T COG1597 60 DTVIAAGGDGTVNEVANGLA-----GTDDPPLGIL 89 (301)
T ss_pred CEEEEecCcchHHHHHHHHh-----cCCCCceEEe
Confidence 35667799999999998773 24555 6666
No 147
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=40.55 E-value=1.8e+02 Score=23.00 Aligned_cols=40 Identities=15% Similarity=0.048 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 41 IELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 41 ~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
.-++..|-.+||.+++-|-. =--+...+.|.+.+..+||+
T Consensus 17 niv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILV 56 (128)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 45666777899999999864 77799999999999999999
No 148
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=40.53 E-value=34 Score=30.56 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=28.8
Q ss_pred HHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027287 111 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 154 (225)
Q Consensus 111 ~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~ 154 (225)
-++..||++++|+-..=+++-.-.+. +....++||.++|++
T Consensus 242 ~~v~e~dg~LvlGsSL~v~Sg~r~i~---~a~~~k~pi~IvNIG 282 (305)
T KOG2683|consen 242 EKVKECDGFLVLGSSLMVLSGFRFIR---HAHEKKKPIAIVNIG 282 (305)
T ss_pred HHHhccCceEEechhHHHHHHHHHHH---HHHhhcCcEEEEecC
Confidence 45678999999977766666554433 222357999999975
No 149
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=40.08 E-value=61 Score=24.27 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHh----CCCeEE---EcCCC-ccHHHHHHHHHHhcC
Q 027287 38 DAAIELGKELVA----RNIDLV---YGGGS-VGLMGLISQAVYDGG 75 (225)
Q Consensus 38 ~~A~~lG~~LA~----~G~~lv---~GGg~-~GlM~a~a~gA~~aG 75 (225)
..|+.+|+.||+ .|..-+ -||-. .|-..|+++++.++|
T Consensus 57 ~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 57 EAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 578888888887 343322 34443 589999999999887
No 150
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=39.88 E-value=53 Score=28.42 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHh----CCCeEE-E--cCC-CccHHHHHHHHHHhcCC
Q 027287 37 KDAAIELGKELVA----RNIDLV-Y--GGG-SVGLMGLISQAVYDGGR 76 (225)
Q Consensus 37 ~~~A~~lG~~LA~----~G~~lv-~--GGg-~~GlM~a~a~gA~~aGG 76 (225)
.+.|.++|+.||+ .|+.=| + ||. +.|-+.|.|++|+++|-
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~GL 209 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVGL 209 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcCC
Confidence 3678889999887 465433 2 333 26899999999999874
No 151
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=39.52 E-value=76 Score=27.79 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=23.1
Q ss_pred eEEEcCCCccHHHHHHHHHHhcC-CeEEEEeCC
Q 027287 53 DLVYGGGSVGLMGLISQAVYDGG-RHVIGVIPK 84 (225)
Q Consensus 53 ~lv~GGg~~GlM~a~a~gA~~aG-G~viGIiP~ 84 (225)
.||.-|| .|-...++++..... ...+||+|.
T Consensus 60 ~ivv~GG-DGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGG-DGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECC-CChHHHHHHHHhcCCCCCcEEEEcC
Confidence 4555666 499999999887643 357999985
No 152
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=39.29 E-value=45 Score=25.84 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=20.8
Q ss_pred CeEEEcCCCccHHHHHHHHHHhcCCeEEEEe
Q 027287 52 IDLVYGGGSVGLMGLISQAVYDGGRHVIGVI 82 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~a~gA~~aGG~viGIi 82 (225)
..||+||+. |+=.++++...+.|+.++.++
T Consensus 2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 2 TVLITGASS-GIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEECCCC-HHHHHHHHHHHhcCceEEEEe
Confidence 357788774 888888888777766554443
No 153
>PRK08862 short chain dehydrogenase; Provisional
Probab=38.98 E-value=1.7e+02 Score=24.50 Aligned_cols=54 Identities=7% Similarity=-0.036 Sum_probs=30.3
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
+++.|.|+|+ + ..+.+++.|+++|+.|+.-+....-.+.+.+...+.++.+..+
T Consensus 6 k~~lVtGas~-G-------IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 6 SIILITSAGS-V-------LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred eEEEEECCcc-H-------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 4677776554 2 2456788888889987765543333333333333445554443
No 154
>PRK13054 lipid kinase; Reviewed
Probab=38.71 E-value=2e+02 Score=25.45 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=23.1
Q ss_pred hCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEE
Q 027287 115 HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 151 (225)
Q Consensus 115 ~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill 151 (225)
..| .|+.-||=||++|+...+.-.. ..++.|+.++
T Consensus 56 ~~d-~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgii 90 (300)
T PRK13054 56 GVA-TVIAGGGDGTINEVATALAQLE-GDARPALGIL 90 (300)
T ss_pred CCC-EEEEECCccHHHHHHHHHHhhc-cCCCCcEEEE
Confidence 345 5668899999999997773111 1124577776
No 155
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=38.63 E-value=69 Score=23.80 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCEEEEecC---CcccHHHHHHHH
Q 027287 107 QRKAEMAKHSDAFIALPG---GYGTLEELLEVI 136 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpG---G~GTL~Ei~~a~ 136 (225)
.+...++..||+++.||| .-|...|...|-
T Consensus 51 ~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~ 83 (92)
T PF14359_consen 51 RICLAMLSDCDAIYMLPGWENSRGARLEHELAK 83 (92)
T ss_pred HHHHHHHHhCCEEEEcCCcccCcchHHHHHHHH
Confidence 445556679999999999 569999998776
No 156
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=38.48 E-value=61 Score=23.12 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=20.9
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVY 56 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~ 56 (225)
.+.+.|++ ...+... ..=.++++.|+++|+.++.
T Consensus 15 ~k~~v~i~-HG~~eh~---~ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 15 PKAVVVIV-HGFGEHS---GRYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred CCEEEEEe-CCcHHHH---HHHHHHHHHHHhCCCEEEE
Confidence 34555553 3333222 2335789999999999884
No 157
>PRK05568 flavodoxin; Provisional
Probab=38.42 E-value=60 Score=25.04 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=18.0
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNID 53 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~ 53 (225)
++|.|+..|..++.. +.|+.+++.+.+.|+.
T Consensus 2 ~~~~IvY~S~~GnT~---~~a~~i~~~~~~~g~~ 32 (142)
T PRK05568 2 KKINIIYWSGTGNTE---AMANLIAEGAKENGAE 32 (142)
T ss_pred CeEEEEEECCCchHH---HHHHHHHHHHHHCCCe
Confidence 456666566666533 3466666666555554
No 158
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=38.38 E-value=3.8e+02 Score=25.94 Aligned_cols=142 Identities=18% Similarity=0.094 Sum_probs=73.4
Q ss_pred hhcccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhC--CCeEEEcCCC-------ccHHHHHHHHHHhcCCeEEEEe
Q 027287 12 EMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVAR--NIDLVYGGGS-------VGLMGLISQAVYDGGRHVIGVI 82 (225)
Q Consensus 12 ~~~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~--G~~lv~GGg~-------~GlM~a~a~gA~~aGG~viGIi 82 (225)
.+.++...+++...||-.....+ ......++-+.|.+. |..+++=|.. .-...++.++....+-++|=-.
T Consensus 257 ~d~~rp~~p~v~~vGgi~~~~~~-~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~ 335 (507)
T PHA03392 257 FDNNRPVPPSVQYLGGLHLHKKP-PQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKY 335 (507)
T ss_pred ccCCCCCCCCeeeecccccCCCC-CCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 46667777777777764331100 001123444555543 5666666542 1234556666555665544322
Q ss_pred CCccccCCCCCCCCceEeecCCHHHHHHHHH-hhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHH
Q 027287 83 PKTLMPREITGETVGEVKPVADMHQRKAEMA-KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL 161 (225)
Q Consensus 83 P~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv-~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~ 161 (225)
.....+... -..+.+.+-++. ..+|. ..+++| |--||.||..|.. .+++|++++- -|+|...
T Consensus 336 ~~~~~~~~~----p~Nv~i~~w~Pq-~~lL~hp~v~~f-ItHGG~~s~~Eal---------~~GvP~v~iP--~~~DQ~~ 398 (507)
T PHA03392 336 DGEVEAINL----PANVLTQKWFPQ-RAVLKHKNVKAF-VTQGGVQSTDEAI---------DALVPMVGLP--MMGDQFY 398 (507)
T ss_pred CCCcCcccC----CCceEEecCCCH-HHHhcCCCCCEE-EecCCcccHHHHH---------HcCCCEEECC--CCccHHH
Confidence 211111011 123445555553 33342 335555 4578899988875 2789999874 3556554
Q ss_pred HHHHHHHHcCC
Q 027287 162 TFIDKAVEEGF 172 (225)
Q Consensus 162 ~~l~~~~~~gf 172 (225)
. .+++.+.|.
T Consensus 399 N-a~rv~~~G~ 408 (507)
T PHA03392 399 N-TNKYVELGI 408 (507)
T ss_pred H-HHHHHHcCc
Confidence 3 455666663
No 159
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=38.36 E-value=1.5e+02 Score=27.80 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=61.9
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE----EcCCCccHHHHHHHHHHhcCCe-EEEEeCCccccCCCCC
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV----YGGGSVGLMGLISQAVYDGGRH-VIGVIPKTLMPREITG 93 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv----~GGg~~GlM~a~a~gA~~aGG~-viGIiP~~~~~~e~~~ 93 (225)
...+.|.-|.|-...-.+.+.-++|-+... .++.|+ ||+++.--.+.+.+.+.+.-|. -+=++-+. .
T Consensus 183 ~~~ltILvGNSgd~sNnHieaL~~L~~~~~-~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~-m------ 254 (360)
T PF07429_consen 183 KGKLTILVGNSGDPSNNHIEALEALKQQFG-DDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEF-M------ 254 (360)
T ss_pred CCceEEEEcCCCCCCccHHHHHHHHHHhcC-CCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhh-C------
Confidence 345666555544333345555555655443 457766 4544333555555555554331 11121111 1
Q ss_pred CCCceEeecCCHHHHHHHHHhhCCEEEEec---CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHH
Q 027287 94 ETVGEVKPVADMHQRKAEMAKHSDAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLT 162 (225)
Q Consensus 94 ~~~~~~~~~~~m~~Rk~~mv~~sDa~Ivlp---GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~ 162 (225)
.+.+=.. +++.+|..|..- =|+||+-=+ .| .++|+++-..+-+|+++.+
T Consensus 255 ----------pf~eYl~-lL~~cDl~if~~~RQQgiGnI~lL------l~---~G~~v~L~~~np~~~~l~~ 306 (360)
T PF07429_consen 255 ----------PFDEYLA-LLSRCDLGIFNHNRQQGIGNICLL------LQ---LGKKVFLSRDNPFWQDLKE 306 (360)
T ss_pred ----------CHHHHHH-HHHhCCEEEEeechhhhHhHHHHH------HH---cCCeEEEecCChHHHHHHh
Confidence 1122223 557888777664 388996532 24 4699999877778877654
No 160
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=38.04 E-value=67 Score=27.11 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=27.8
Q ss_pred cceEEEEeCCCCCC-ChHHHHHHHHHHHHHHhCCCeEE
Q 027287 19 FNRICVFCGSSAGK-KSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 19 ~~~V~Vfggs~~~~-~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
|++|+|+|.-..++ -=-+...+++|+..|+++|+.+.
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~ 38 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVT 38 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEE
Confidence 67999996443443 23678899999999999888643
No 161
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=37.97 E-value=1.9e+02 Score=24.88 Aligned_cols=71 Identities=14% Similarity=0.276 Sum_probs=40.8
Q ss_pred HHHHHHhhCCEEEEec--CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 027287 108 RKAEMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP 185 (225)
Q Consensus 108 Rk~~mv~~sDa~Ivlp--GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 185 (225)
....+...||++|.-. .|+|. =+.|+++ .++|+|..+..++- ++ +.......++-..
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~------~g~PvI~~~~~~~~-e~------------~~~~~~g~~~~~~ 315 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPN--TAIEALA------CGTPVVAFDVGGIP-DI------------VDHGVTGYLAKPG 315 (365)
T ss_pred HHHHHHHhCCEEEeccccccccH--HHHHHHh------cCCCEEEecCCCCh-hh------------eeCCCceEEeCCC
Confidence 4455778899987643 23332 2445553 68999988765432 11 1111123344455
Q ss_pred CHHHHHHHHHhhcC
Q 027287 186 NAKELMNKMEEYFP 199 (225)
Q Consensus 186 d~ee~~~~l~~~~~ 199 (225)
|++++.+.|.+...
T Consensus 316 ~~~~~~~~l~~l~~ 329 (365)
T cd03825 316 DPEDLAEGIEWLLA 329 (365)
T ss_pred CHHHHHHHHHHHHh
Confidence 78888888877653
No 162
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=37.88 E-value=3.3e+02 Score=25.50 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=48.4
Q ss_pred CeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHH
Q 027287 52 IDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEE 131 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~E 131 (225)
...++. + |.|+.....+...--.++++-|... .+.- .++... -+.|+++.=.+|++-||=||.--
T Consensus 51 ~~flt~--p-~~mG~~~~~~~~~~~~v~~~~~~~~------~tTa-----~DT~~~-~r~~~~~gVdlIvfaGGDGTarD 115 (355)
T COG3199 51 VEFLTP--P-GPMGESLAEASGFKYRVIRFQESTP------RTTA-----EDTINA-VRRMVERGVDLIVFAGGDGTARD 115 (355)
T ss_pred eEEEeC--C-cccchhHHHhhcCcceEEeecccCC------CccH-----HHHHHH-HHHHHhcCceEEEEeCCCccHHH
Confidence 555655 4 7788877766666667777533221 0000 011111 23466766778899999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEE
Q 027287 132 LLEVITWAQLGIHDKPVGLL 151 (225)
Q Consensus 132 i~~a~~~~qlg~~~kPiill 151 (225)
+..+. ..+.||+-+
T Consensus 116 Va~av------~~~vPvLGi 129 (355)
T COG3199 116 VAEAV------GADVPVLGI 129 (355)
T ss_pred HHhhc------cCCCceEee
Confidence 98776 256787665
No 163
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=37.85 E-value=1.1e+02 Score=28.32 Aligned_cols=46 Identities=33% Similarity=0.321 Sum_probs=30.6
Q ss_pred hhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHH
Q 027287 114 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLT 162 (225)
Q Consensus 114 ~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~ 162 (225)
..=|.+|+++|+.||..=+..-+ .|++ +..+||=++..+-=+.+.+
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g~--~~~~-~~~~ViG~~v~~~~~~~~~ 224 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVGL--AQLG-PDVEVIGIDVSADPEKLKE 224 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHHh--hhcc-CCCceEEEeecCCHHHHHH
Confidence 44589999999999998887555 3544 4577776665543333333
No 164
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.79 E-value=1.9e+02 Score=26.03 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=17.3
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCC
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARN 51 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G 51 (225)
++++|+|+.-.. .+.-.+.++++.++|.++|
T Consensus 3 ~~~~v~iv~~~~---k~~a~e~~~~i~~~L~~~g 33 (295)
T PRK01231 3 SFRNIGLIGRLG---SSSVVETLRRLKDFLLDRG 33 (295)
T ss_pred CCCEEEEEecCC---CHHHHHHHHHHHHHHHHCC
Confidence 366788884222 2344456666666665443
No 165
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=37.72 E-value=85 Score=29.72 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=33.5
Q ss_pred CCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC-----CCchHHHHHHH
Q 027287 116 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLTFID 165 (225)
Q Consensus 116 sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~ 165 (225)
.|+|||..| .-||+|-+.++.+.--+ .+|||||-+.- --.|...+++.
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-~~kPVVlTGAqrp~~~~~sDa~~NL~~ 192 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-LPVPVVLVGAQRSSDRPSSDAALNLIC 192 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-CCCCEEEECCCCCCCCCCchHHHHHHH
Confidence 689999886 79999999888654322 37999997642 13455555544
No 166
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=37.71 E-value=55 Score=28.69 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=26.3
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYG 57 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 57 (225)
++|+|.+|+.......-.+.++++-++|.+.||.++.=
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i 42 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPI 42 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEE
Confidence 36888666554433333457899999999999997643
No 167
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=37.64 E-value=1.5e+02 Score=25.35 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=42.5
Q ss_pred HHHHHHHhhCCEEEEecCC------cccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCc
Q 027287 107 QRKAEMAKHSDAFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHI 180 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpGG------~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~ 180 (225)
+...-+...||++|...-. -|.-.=++|++. .++|++..+..+. ..++ . +.....
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a------~G~Pvi~~~~~~~-~~~i-------~-----~~~~g~ 307 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMA------MGLPVISTDVSGI-PELV-------E-----DGETGL 307 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHH------cCCCEEecCCCCc-chhh-------h-----CCCceE
Confidence 4555677889987764322 233334566663 6899998775433 2221 1 111233
Q ss_pred EEEcCCHHHHHHHHHhhcC
Q 027287 181 IVSAPNAKELMNKMEEYFP 199 (225)
Q Consensus 181 i~~~~d~ee~~~~l~~~~~ 199 (225)
++-.+|++++.+.|.+...
T Consensus 308 ~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 308 LVPPGDPEALADAIERLLD 326 (355)
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 3334588999888887653
No 168
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=37.46 E-value=3.1e+02 Score=24.67 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=63.1
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCC-CC
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGE-TV 96 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~-~~ 96 (225)
..-++=|.+..+.--.+.+ ...+.++.|++.||.|.-=-.+ .-.+++.-.++|-.. |+|-.- | ...+ .+
T Consensus 106 ~wIKLEVi~D~~~LlPD~~--etl~Aae~Lv~eGF~VlPY~~~---D~v~a~rLed~Gc~a--VMPlgs-P--IGSg~Gl 175 (267)
T CHL00162 106 NFVKLEVISDPKYLLPDPI--GTLKAAEFLVKKGFTVLPYINA---DPMLAKHLEDIGCAT--VMPLGS-P--IGSGQGL 175 (267)
T ss_pred CeEEEEEeCCCcccCCChH--HHHHHHHHHHHCCCEEeecCCC---CHHHHHHHHHcCCeE--EeeccC-c--ccCCCCC
Confidence 3455677766554322222 2356778888999998832222 345667777777654 444221 1 1111 11
Q ss_pred ceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHH
Q 027287 97 GEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVIT 137 (225)
Q Consensus 97 ~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~ 137 (225)
. + ..--+++.+.++.-|++.+|+||-+.+..++.
T Consensus 176 ~-----n--~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmE 209 (267)
T CHL00162 176 Q-----N--LLNLQIIIENAKIPVIIDAGIGTPSEASQAME 209 (267)
T ss_pred C-----C--HHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHH
Confidence 0 0 23356788889999999999999999999983
No 169
>PRK06635 aspartate kinase; Reviewed
Probab=37.45 E-value=99 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=19.6
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHhCCC--eEEEcCC
Q 027287 25 FCGSSAGKKSTYKDAAIELGKELVARNI--DLVYGGG 59 (225)
Q Consensus 25 fggs~~~~~~~~~~~A~~lG~~LA~~G~--~lv~GGg 59 (225)
|||+...+.+.+.+.+..+.++. +.|+ .||.+||
T Consensus 8 ~GGs~l~~~~~~~~~~~~i~~~~-~~g~~~vvV~sg~ 43 (404)
T PRK06635 8 FGGTSVGDVERIKRVAERVKAEV-EAGHQVVVVVSAM 43 (404)
T ss_pred ECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEEeCC
Confidence 88888765445555555555443 4454 4555554
No 170
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=37.18 E-value=43 Score=27.64 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=18.1
Q ss_pred cceEEEEeCCCCCCChHHHHHHHH
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIE 42 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~ 42 (225)
|++|||||||=++..-.+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 357999999988777777666555
No 171
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.16 E-value=2e+02 Score=25.98 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=17.5
Q ss_pred CCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 51 NIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 51 G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
...++. ||. |-+-.+++.....+-.++||
T Consensus 59 d~vi~~-GGD-GT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 59 DLAIVL-GGD-GTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred CEEEEE-CCc-HHHHHHHHHhccCCCCEEEE
Confidence 445444 454 88888887776554444444
No 172
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=37.16 E-value=1.8e+02 Score=27.34 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHh----CCCeEEEcCCC--------------ccHHHHH-HHHHHhcCCeEEEE
Q 027287 38 DAAIELGKELVA----RNIDLVYGGGS--------------VGLMGLI-SQAVYDGGRHVIGV 81 (225)
Q Consensus 38 ~~A~~lG~~LA~----~G~~lv~GGg~--------------~GlM~a~-a~gA~~aGG~viGI 81 (225)
+....+.+.|.. .-..|||||++ .|.|+.+ ++.+.+.|..|+-+
T Consensus 172 ~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v 234 (399)
T PRK05579 172 EIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLV 234 (399)
T ss_pred HHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEe
Confidence 444555555532 23567899831 4877655 67777788888777
No 173
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=37.15 E-value=3.5e+02 Score=25.28 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=61.1
Q ss_pred EcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEeec---CCHHHHHHHHH--hhCCEEEE-ecCCcccH
Q 027287 56 YGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPV---ADMHQRKAEMA--KHSDAFIA-LPGGYGTL 129 (225)
Q Consensus 56 ~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~---~~m~~Rk~~mv--~~sDa~Iv-lpGG~GTL 129 (225)
-+.| .|+.-+..+....+|+.. .|++ ++--. ..+..=-+++. ...|++++ ++||+.-.
T Consensus 262 i~nG-aGl~m~t~D~i~~~gg~p--------------aNPl-Dlgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~ 325 (392)
T PRK14046 262 IVNG-AGLAMATMDMIKLAGGEP--------------ANFL-DVGGGASPERVAKAFRLVLSDRNVKAILVNIFAGINRC 325 (392)
T ss_pred EeCC-ccHHHHHHHHHHhcCCCC--------------cCCE-EecCCCCHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCH
Confidence 3444 388888889888888752 2222 12111 11111112222 23466554 46777666
Q ss_pred HHHHHHHHHHHhC-CCCCcEEEEeCCC-CchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 027287 130 EELLEVITWAQLG-IHDKPVGLLNVDG-YYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEY 197 (225)
Q Consensus 130 ~Ei~~a~~~~qlg-~~~kPiill~~~g-~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~ 197 (225)
+++.+.+.-..-. ..+||+++ ...| -.+...+. +.+.|+ .++..+|.+|+.+..-+.
T Consensus 326 ~~vA~~Ii~a~~~~~~~kPvvv-~l~G~~~e~~~~i---L~~~Gi-------pvf~~~~~~~a~~~~v~~ 384 (392)
T PRK14046 326 DWVAEGVVQAAREVGIDVPLVV-RLAGTNVEEGRKI---LAESGL-------PIITADTLAEAAEKAVEA 384 (392)
T ss_pred HHHHHHHHHHHHhcCCCCcEEE-EcCCCCHHHHHHH---HHHcCC-------CeeecCCHHHHHHHHHHH
Confidence 8887776532211 25789955 3333 22222222 333332 368899999999988764
No 174
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=37.12 E-value=44 Score=29.38 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=19.4
Q ss_pred eEEEcCCCccHHHHHHHHHHhcCCeEEE
Q 027287 53 DLVYGGGSVGLMGLISQAVYDGGRHVIG 80 (225)
Q Consensus 53 ~lv~GGg~~GlM~a~a~gA~~aGG~viG 80 (225)
.|+|||+. |+=.+.++...++|-.||=
T Consensus 8 iLITGG~s-GIGl~lak~f~elgN~VIi 34 (245)
T COG3967 8 ILITGGAS-GIGLALAKRFLELGNTVII 34 (245)
T ss_pred EEEeCCcc-hhhHHHHHHHHHhCCEEEE
Confidence 45677774 8888888888888777653
No 175
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=36.81 E-value=78 Score=27.41 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 027287 106 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP 185 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 185 (225)
..+....++.||.+||++=. -++.-+..+.+.-..+.|++++|.+.- .+ +.....-+++..
T Consensus 166 ~~~~~~~~~~aDlllvvGTS----l~V~pa~~l~~~~~~~~~~v~iN~~~~--------------~~-~~~~~~d~~~~~ 226 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTS----LKVAPFASLPSRVPSEVPRVLINREPV--------------GH-LGKRPFDVALLG 226 (235)
T ss_pred HHHHHHHHhcCCEEEEECCC----CeeccHHHHHHHHhCCCcEEEEeCCCC--------------CC-CCCCCcCEEEeC
Confidence 45555667889999996432 222222222222124689999996410 00 000112357778
Q ss_pred CHHHHHHHH
Q 027287 186 NAKELMNKM 194 (225)
Q Consensus 186 d~ee~~~~l 194 (225)
+.+|++..|
T Consensus 227 ~~~~~l~~~ 235 (235)
T cd01408 227 DCDDGVREL 235 (235)
T ss_pred CHHHHHHhC
Confidence 888887654
No 176
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=36.72 E-value=2.2e+02 Score=26.25 Aligned_cols=73 Identities=15% Similarity=0.039 Sum_probs=48.5
Q ss_pred hHHHHHhhhcccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEE
Q 027287 5 MEMEMEMEMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIG 80 (225)
Q Consensus 5 ~~~~~~~~~~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viG 80 (225)
++..+|..+.....-++|+|+++++..+... ..++|=+.+.+.|+.|+.=+-+..-+-..+..++.....+|=
T Consensus 145 v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~---l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~ 217 (322)
T COG2984 145 VAQQIELIKALLPNAKSIGVLYNPGEANSVS---LVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIY 217 (322)
T ss_pred HHHHHHHHHHhCCCCeeEEEEeCCCCcccHH---HHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEE
Confidence 4556666666777778999999888765443 346777777788999997766545555555555554444443
No 177
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=36.70 E-value=1e+02 Score=27.27 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEE
Q 027287 34 STYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVI 79 (225)
Q Consensus 34 ~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~vi 79 (225)
-.|.+.|-.+.+.+|.+|=.|..=|-+.|-++-+.+.|.++||.++
T Consensus 91 ~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 91 ASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCcee
Confidence 5789999999999998655555444456999999999999999764
No 178
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=36.66 E-value=2.1e+02 Score=24.98 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHHhhCCEEEEec-CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEc
Q 027287 106 HQRKAEMAKHSDAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSA 184 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~Ivlp-GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 184 (225)
.+...-++..||++|... -|+|.. +.|+++ .++|||..+.+| +.++ +.+.....++-.
T Consensus 252 ~~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama------~G~Pvi~~~~~~-~~e~------------i~~~~~G~~~~~ 310 (351)
T cd03804 252 DEELRDLYARARAFLFPAEEDFGIV--PVEAMA------SGTPVIAYGKGG-ALET------------VIDGVTGILFEE 310 (351)
T ss_pred HHHHHHHHHhCCEEEECCcCCCCch--HHHHHH------cCCCEEEeCCCC-Ccce------------eeCCCCEEEeCC
Confidence 344566778999988543 456655 356663 689999987654 2222 111223344446
Q ss_pred CCHHHHHHHHHhhcC
Q 027287 185 PNAKELMNKMEEYFP 199 (225)
Q Consensus 185 ~d~ee~~~~l~~~~~ 199 (225)
+|++++.+.|.....
T Consensus 311 ~~~~~la~~i~~l~~ 325 (351)
T cd03804 311 QTVESLAAAVERFEK 325 (351)
T ss_pred CCHHHHHHHHHHHHh
Confidence 789888888877654
No 179
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.56 E-value=2e+02 Score=25.49 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=35.6
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCC---------CeEEEcCCCccHHHHHHHHHHh--cCCeEEEE
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARN---------IDLVYGGGSVGLMGLISQAVYD--GGRHVIGV 81 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G---------~~lv~GGg~~GlM~a~a~gA~~--aGG~viGI 81 (225)
+|+|+. +. ++...+.+.++.++|.++| +.++.|| . |-+=.+++.+.. .+-.++||
T Consensus 2 ~i~Ii~--~~--~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGG-D-GT~L~a~~~~~~~~~~iPilGI 67 (265)
T PRK04885 2 KVAIIS--NG--DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVGG-D-GTLLSAFHRYENQLDKVRFVGV 67 (265)
T ss_pred EEEEEe--CC--CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEECC-c-HHHHHHHHHhcccCCCCeEEEE
Confidence 488883 32 4556678889998887755 3445554 4 777666665554 45566776
No 180
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=36.48 E-value=1.6e+02 Score=22.18 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=3.2
Q ss_pred cCCeEEE
Q 027287 74 GGRHVIG 80 (225)
Q Consensus 74 aGG~viG 80 (225)
.|..+++
T Consensus 109 ~g~~~v~ 115 (140)
T TIGR01753 109 AGATIIA 115 (140)
T ss_pred CCCEEec
Confidence 4555443
No 181
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=36.42 E-value=66 Score=24.59 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=18.7
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
|+|+|+|.|..... .++++-+.|.++|+.++
T Consensus 1 ksiAVvGaS~~~~~-----~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPGK-----FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTTS-----HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCCC-----hHHHHHHHHHhCCCEEE
Confidence 58999976664322 35667777777888765
No 182
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.38 E-value=1.2e+02 Score=22.12 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=52.0
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEecCCc--ccHHH
Q 027287 54 LVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGY--GTLEE 131 (225)
Q Consensus 54 lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~--GTL~E 131 (225)
++-||- .......-+-+.+.|+..+-. .... .. .....+-.-.+..+|++|++-+=+ ++...
T Consensus 3 liVGG~-~~~~~~~~~~~~~~G~~~~~h--g~~~----~~---------~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~ 66 (97)
T PF10087_consen 3 LIVGGR-EDRERRYKRILEKYGGKLIHH--GRDG----GD---------EKKASRLPSKIKKADLVIVFTDYVSHNAMWK 66 (97)
T ss_pred EEEcCC-cccHHHHHHHHHHcCCEEEEE--ecCC----CC---------ccchhHHHHhcCCCCEEEEEeCCcChHHHHH
Confidence 444653 255555556666677776655 1100 00 111233455678899999998854 45555
Q ss_pred HHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHH
Q 027287 132 LLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDK 166 (225)
Q Consensus 132 i~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~ 166 (225)
+-... ..+++|+++.+.. =|..+...|++
T Consensus 67 vk~~a-----kk~~ip~~~~~~~-~~~~l~~~l~~ 95 (97)
T PF10087_consen 67 VKKAA-----KKYGIPIIYSRSR-GVSSLERALER 95 (97)
T ss_pred HHHHH-----HHcCCcEEEECCC-CHHHHHHHHHh
Confidence 44433 2468999999754 46666665543
No 183
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=36.32 E-value=96 Score=28.43 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=35.0
Q ss_pred hhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC-----CCchHHHHHHHH
Q 027287 114 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLTFIDK 166 (225)
Q Consensus 114 ~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~~ 166 (225)
...|+|||.-| .-||+|-..++.+.- ...+|||||-+.- --.|...++...
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l-~~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 135 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFML-ENLGKPVIVTGSQIPLAELRSDGQTNLLNA 135 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHH-hCCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 56799999985 799999998886533 2247999997641 234555555443
No 184
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.29 E-value=2.2e+02 Score=25.90 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=14.6
Q ss_pred ccHHHHHHHHHHhcCCeEEEE
Q 027287 61 VGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 61 ~GlM~a~a~gA~~aGG~viGI 81 (225)
.|-|-.+++-+...+-.++||
T Consensus 82 DGT~L~aar~~~~~~~PilGI 102 (306)
T PRK03372 82 DGTILRAAELARAADVPVLGV 102 (306)
T ss_pred CHHHHHHHHHhccCCCcEEEE
Confidence 377766666666666678887
No 185
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=36.28 E-value=74 Score=28.02 Aligned_cols=35 Identities=11% Similarity=0.225 Sum_probs=24.9
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
+|+|.+|.....++.=...|+++.+.|.+.||.++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~ 36 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVT 36 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEE
Confidence 57775444444445445789999999999999865
No 186
>PRK00208 thiG thiazole synthase; Reviewed
Probab=36.27 E-value=3.1e+02 Score=24.40 Aligned_cols=103 Identities=12% Similarity=0.202 Sum_probs=62.5
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE-EcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCC
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV-YGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETV 96 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv-~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~ 96 (225)
..-++=|++.......+. ....+-++.|++.|+.++ |-.-. +. .++...+.|-..+ .|-. .+... ...+
T Consensus 92 ~~iKlEVi~d~~~llpd~--~~tv~aa~~L~~~Gf~vlpyc~~d--~~--~ak~l~~~G~~~v--mPlg-~pIGs-g~gi 161 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDP--IETLKAAEILVKEGFVVLPYCTDD--PV--LAKRLEEAGCAAV--MPLG-APIGS-GLGL 161 (250)
T ss_pred CeEEEEEecCCCCCCcCH--HHHHHHHHHHHHCCCEEEEEeCCC--HH--HHHHHHHcCCCEe--CCCC-cCCCC-CCCC
Confidence 344567776655443332 235667888889999999 77543 33 3344455566555 3311 11110 1111
Q ss_pred ceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHH
Q 027287 97 GEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVIT 137 (225)
Q Consensus 97 ~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~ 137 (225)
.+ .+..+.+.+..+.-|+..||+||.+++..++.
T Consensus 162 ------~~-~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame 195 (250)
T PRK00208 162 ------LN-PYNLRIIIEQADVPVIVDAGIGTPSDAAQAME 195 (250)
T ss_pred ------CC-HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH
Confidence 11 44466677777899999999999999999983
No 187
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=36.27 E-value=1.3e+02 Score=25.68 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCEEEEec-----CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcE
Q 027287 107 QRKAEMAKHSDAFIALP-----GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHII 181 (225)
Q Consensus 107 ~Rk~~mv~~sDa~Ivlp-----GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i 181 (225)
+...-++..||++|.-. |-.+++.| +++ .++||+..+..+ .+.+. ......+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~~~E---a~a------~G~PvI~~~~~~-~~~i~-------------~~~~g~~ 315 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGVLAY---AIG------FGKPVISTPVGH-AEEVL-------------DGGTGLL 315 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchHHHH---HHH------cCCCEEecCCCC-hheee-------------eCCCcEE
Confidence 44556778899987532 22235444 442 579999877654 22221 1122334
Q ss_pred EEcCCHHHHHHHHHhhcC
Q 027287 182 VSAPNAKELMNKMEEYFP 199 (225)
Q Consensus 182 ~~~~d~ee~~~~l~~~~~ 199 (225)
+-.+|++++.+.|.....
T Consensus 316 ~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 316 VPPGDPAALAEAIRRLLA 333 (366)
T ss_pred EcCCCHHHHHHHHHHHHc
Confidence 555678888888887654
No 188
>PRK06756 flavodoxin; Provisional
Probab=36.22 E-value=1.6e+02 Score=22.94 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=6.7
Q ss_pred HHHHHHhcCCeEEE
Q 027287 67 ISQAVYDGGRHVIG 80 (225)
Q Consensus 67 ~a~gA~~aGG~viG 80 (225)
..+...+.|..+++
T Consensus 106 l~~~l~~~g~~~v~ 119 (148)
T PRK06756 106 LIEKLQERGAAVVL 119 (148)
T ss_pred HHHHHHHCCCEEcC
Confidence 33334445665554
No 189
>PRK13055 putative lipid kinase; Reviewed
Probab=36.09 E-value=1.1e+02 Score=27.63 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=21.3
Q ss_pred CCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEE
Q 027287 116 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 151 (225)
Q Consensus 116 sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill 151 (225)
.|+ |+.-||=||++|+...+. ..+ .+.|+.++
T Consensus 60 ~d~-vvv~GGDGTl~evvngl~--~~~-~~~~Lgii 91 (334)
T PRK13055 60 FDL-IIAAGGDGTINEVVNGIA--PLE-KRPKMAII 91 (334)
T ss_pred CCE-EEEECCCCHHHHHHHHHh--hcC-CCCcEEEE
Confidence 354 556799999999997772 111 23567776
No 190
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=36.04 E-value=72 Score=26.60 Aligned_cols=137 Identities=19% Similarity=0.218 Sum_probs=69.5
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe---EEEcCCCccHHHHHHHHHHhcCCeEE-EEeCCccccCCCCCC
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNID---LVYGGGSVGLMGLISQAVYDGGRHVI-GVIPKTLMPREITGE 94 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~---lv~GGg~~GlM~a~a~gA~~aGG~vi-GIiP~~~~~~e~~~~ 94 (225)
++.+-|-+|+..=.+=.-.-.+.++-+.|-++|++ |=.|=|..+.-... +.+...+|.+| |+ + +
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~-~~~~k~~gl~id~y--~-f-------- 70 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPI-DLIRKNGGLTIDGY--D-F-------- 70 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHH-HhhcccCCeEEEEE--e-c--------
Confidence 35666766665421112223345667778888875 23666632333322 22324444332 22 0 0
Q ss_pred CCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEE-eCCCCchHHHHHHHHHHHcCCC
Q 027287 95 TVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL-NVDGYYNSLLTFIDKAVEEGFI 173 (225)
Q Consensus 95 ~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill-~~~g~w~~l~~~l~~~~~~gfi 173 (225)
.+.+ +. -++.||. |+=.+|.||.-|.. ..+||.+++ |-.=+-++=.++.+++.++|++
T Consensus 71 -------~psl---~e-~I~~Adl-VIsHAGaGS~letL---------~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 71 -------SPSL---TE-DIRSADL-VISHAGAGSCLETL---------RLGKPLIVVVNDSLMDNHQLELAKQLAEEGYL 129 (170)
T ss_pred -------CccH---HH-HHhhccE-EEecCCcchHHHHH---------HcCCCEEEEeChHhhhhHHHHHHHHHHhcCcE
Confidence 0111 11 2234554 44578999977664 246998876 4322444555656677777764
Q ss_pred CccccCcEEEcCCHHHHHHHHHhh
Q 027287 174 SPNARHIIVSAPNAKELMNKMEEY 197 (225)
Q Consensus 174 ~~~~~~~i~~~~d~ee~~~~l~~~ 197 (225)
+.| +|.++.+.|.+.
T Consensus 130 --------~~C-~ps~L~~~L~~~ 144 (170)
T KOG3349|consen 130 --------YYC-TPSTLPAGLAKL 144 (170)
T ss_pred --------EEe-eccchHHHHHhh
Confidence 222 344466665553
No 191
>PRK00358 pyrH uridylate kinase; Provisional
Probab=35.76 E-value=56 Score=27.79 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=19.2
Q ss_pred EeCCCCCC------C-hHHHHHHHHHHHHHHhCC--CeEEEcCCC
Q 027287 25 FCGSSAGK------K-STYKDAAIELGKELVARN--IDLVYGGGS 60 (225)
Q Consensus 25 fggs~~~~------~-~~~~~~A~~lG~~LA~~G--~~lv~GGg~ 60 (225)
||||.... + +...+.|+++.+ +.+.| ..||.|||.
T Consensus 7 ~GGs~l~~~~~~~~~~~~i~~~~~~i~~-~~~~g~~vvlV~gGG~ 50 (231)
T PRK00358 7 LSGEALAGEKGFGIDPEVLDRIAEEIKE-VVELGVEVAIVVGGGN 50 (231)
T ss_pred eccceecCCCCCCCCHHHHHHHHHHHHH-HHHCCCeEEEEECCCH
Confidence 77777642 2 233344555544 33445 567899864
No 192
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=35.75 E-value=1.5e+02 Score=24.77 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=39.1
Q ss_pred HHHHHhhCCEEEEec---CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 027287 109 KAEMAKHSDAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP 185 (225)
Q Consensus 109 k~~mv~~sDa~Ivlp---GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 185 (225)
...++..||++|... |.-.++ +|++. .++|+|..+..++ ..++ . ......++-.+
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~~~---~Ea~~------~g~pvI~~~~~~~-~~~~-------~-----~~~~g~~~~~~ 326 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGLVL---LEAMA------AGLPVVASDVGGI-PEVV-------E-----DGETGLLVPPG 326 (374)
T ss_pred HHHHHHhcCEEEecchhccccchH---HHHHH------cCCcEEEeCCCCh-hHHh-------c-----CCcceEEeCCC
Confidence 444667799877643 223344 44452 5799998776432 2221 1 12223445555
Q ss_pred CHHHHHHHHHhhc
Q 027287 186 NAKELMNKMEEYF 198 (225)
Q Consensus 186 d~ee~~~~l~~~~ 198 (225)
|++++.+.|.+..
T Consensus 327 ~~~~l~~~i~~~~ 339 (374)
T cd03801 327 DPEALAEAILRLL 339 (374)
T ss_pred CHHHHHHHHHHHH
Confidence 6888988888754
No 193
>PRK08210 aspartate kinase I; Reviewed
Probab=35.54 E-value=67 Score=29.84 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=23.5
Q ss_pred eEEE-EeCCCCCCChHHHHHHHHHHHHHHhCCC---eEEEcCCC
Q 027287 21 RICV-FCGSSAGKKSTYKDAAIELGKELVARNI---DLVYGGGS 60 (225)
Q Consensus 21 ~V~V-fggs~~~~~~~~~~~A~~lG~~LA~~G~---~lv~GGg~ 60 (225)
.+.| ||||.....+...+.++++.+++. .|+ .|++|+|.
T Consensus 3 ~iViK~GGs~l~~~~~~~~~~~~i~~~~~-~g~~~vvV~sa~g~ 45 (403)
T PRK08210 3 IIVQKFGGTSVSTEERRKMAVNKIKKALK-EGYKVVVVVSAMGR 45 (403)
T ss_pred eEEEeECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCC
Confidence 3444 999888755556666667776664 443 34455543
No 194
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=35.42 E-value=51 Score=28.99 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=25.4
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCC
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGG 59 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg 59 (225)
+|+|+||......+.=...++.+-+.|.+.||.++.-..
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~ 39 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDI 39 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEee
Confidence 466755544433332135789999999999999865443
No 195
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=35.32 E-value=1e+02 Score=29.39 Aligned_cols=47 Identities=11% Similarity=0.207 Sum_probs=34.5
Q ss_pred CCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC-----CCchHHHHHHH
Q 027287 116 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLTFID 165 (225)
Q Consensus 116 sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~ 165 (225)
.|+|||..| .-||+|-+.++.+.- ..+|||||-+.- --.|...+++.
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~ 204 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLIC 204 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHH
Confidence 799999985 799999998887644 358999998642 13455555554
No 196
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=35.23 E-value=3.2e+02 Score=24.27 Aligned_cols=102 Identities=13% Similarity=0.228 Sum_probs=60.2
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE-EcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCc
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV-YGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVG 97 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv-~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~ 97 (225)
.-++=|.+....-..+. ...-+-++.|++.|+.++ |-.-. +. .++...+.|-..+ .|-. .+... ...+
T Consensus 93 ~iKlEVi~d~~~Llpd~--~~tv~aa~~L~~~Gf~vlpyc~dd--~~--~ar~l~~~G~~~v--mPlg-~pIGs-g~Gi- 161 (248)
T cd04728 93 WIKLEVIGDDKTLLPDP--IETLKAAEILVKEGFTVLPYCTDD--PV--LAKRLEDAGCAAV--MPLG-SPIGS-GQGL- 161 (248)
T ss_pred eEEEEEecCccccccCH--HHHHHHHHHHHHCCCEEEEEeCCC--HH--HHHHHHHcCCCEe--CCCC-cCCCC-CCCC-
Confidence 34566776555433222 234567788889999999 76533 33 3444555666555 3311 11110 1111
Q ss_pred eEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHH
Q 027287 98 EVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVIT 137 (225)
Q Consensus 98 ~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~ 137 (225)
.+ .+.-+.+.+..+.-|+..||+||.+++..++.
T Consensus 162 -----~~-~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame 195 (248)
T cd04728 162 -----LN-PYNLRIIIERADVPVIVDAGIGTPSDAAQAME 195 (248)
T ss_pred -----CC-HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH
Confidence 11 33344666667899999999999999999983
No 197
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=35.16 E-value=33 Score=29.10 Aligned_cols=50 Identities=16% Similarity=0.383 Sum_probs=30.2
Q ss_pred hCCEEEEecCCcccHHHHHHHH-------------HHHHhCCCCCcEEEEeCCCCchHHHHHHHHHH
Q 027287 115 HSDAFIALPGGYGTLEELLEVI-------------TWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAV 168 (225)
Q Consensus 115 ~sDa~IvlpGG~GTL~Ei~~a~-------------~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~ 168 (225)
.+...|=+-.|.---.-+..++ +|.+ ..+|+|==|. |||+.++++=+++.
T Consensus 94 gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vK---a~RpiIRPN~-GFw~QLi~YE~qL~ 156 (198)
T KOG1718|consen 94 GGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVK---ARRPIIRPNV-GFWRQLIDYEQQLF 156 (198)
T ss_pred CCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHH---hhCceeCCCc-cHHHHHHHHHHHhc
Confidence 3445555566655444444444 4433 4589986664 89999998755553
No 198
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=35.02 E-value=1.4e+02 Score=24.04 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhCCCeEE
Q 027287 36 YKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 36 ~~~~A~~lG~~LA~~G~~lv 55 (225)
|....+.+-+.|.+.|..+|
T Consensus 96 f~~a~~~l~~~l~~~G~~~i 115 (167)
T TIGR01752 96 FCDGMGILYDKIKARGAKVV 115 (167)
T ss_pred HHHHHHHHHHHHHHcCCeEE
Confidence 33444444444544455544
No 199
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.78 E-value=85 Score=27.97 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=25.2
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYG 57 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 57 (225)
++|+|+. +.+ ++.-.+.+.++.++|.++|+.+..-
T Consensus 1 m~v~iv~--~~~-k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 1 MRFGIVA--RRD-KEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred CEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 3588883 333 3445577899999999999987764
No 200
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=34.78 E-value=1e+02 Score=26.71 Aligned_cols=39 Identities=10% Similarity=-0.010 Sum_probs=31.0
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 17 SKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 17 ~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
.|...|+|||||=++.+-.+...|+..-+.+...++.+|
T Consensus 19 ~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 19 PRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 677889999999988888888888877777776666544
No 201
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=34.24 E-value=2e+02 Score=24.79 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=41.4
Q ss_pred HHHHHhhCCEEEEec---CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 027287 109 KAEMAKHSDAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP 185 (225)
Q Consensus 109 k~~mv~~sDa~Ivlp---GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 185 (225)
...++..||++|.-. -|+|+ =++|+++ .++|+|..+..+ ..+++. ++ ....++-.+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a------~G~PvI~~~~~~-~~e~i~-------~~-----~~g~~~~~~ 315 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGR--TAVEAQA------MGRPVIASDHGG-ARETVR-------PG-----ETGLLVPPG 315 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCch--HHHHHHh------cCCCEEEcCCCC-cHHHHh-------CC-----CceEEeCCC
Confidence 445677899987643 34552 2455553 689999987654 333322 11 133455568
Q ss_pred CHHHHHHHHHhh
Q 027287 186 NAKELMNKMEEY 197 (225)
Q Consensus 186 d~ee~~~~l~~~ 197 (225)
|++++.+.|.+.
T Consensus 316 ~~~~l~~~i~~~ 327 (355)
T cd03819 316 DAEALAQALDQI 327 (355)
T ss_pred CHHHHHHHHHHH
Confidence 999998888644
No 202
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=34.14 E-value=34 Score=27.96 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=34.0
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE--cCC---CccHHHHHHHHHHhcCCeEEE
Q 027287 16 QSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVY--GGG---SVGLMGLISQAVYDGGRHVIG 80 (225)
Q Consensus 16 ~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~--GGg---~~GlM~a~a~gA~~aGG~viG 80 (225)
..+.++|.|+||+... - -.+..++|.|+++|+.+.. -+- ........-+-+.+.|+.++-
T Consensus 22 ~~~~~~v~il~G~GnN----G-gDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 86 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNN----G-GDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIE 86 (169)
T ss_dssp CCTT-EEEEEE-SSHH----H-HHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEES
T ss_pred ccCCCeEEEEECCCCC----h-HHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEee
Confidence 4677899999987642 1 1355688899999998764 211 123333334445556765543
No 203
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=34.13 E-value=58 Score=25.40 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARNIDL 54 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~l 54 (225)
++.|+.+|..++.. +.|+.+++.|...|+.+
T Consensus 2 ~i~IiY~S~tGnTe---~iA~~ia~~l~~~g~~v 32 (140)
T TIGR01754 2 RILLAYLSLSGNTE---EVAFMIQDYLQKDGHEV 32 (140)
T ss_pred eEEEEEECCCChHH---HHHHHHHHHHhhCCeeE
Confidence 45666577777533 46777888776666543
No 204
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=34.06 E-value=2.6e+02 Score=25.04 Aligned_cols=73 Identities=22% Similarity=0.389 Sum_probs=39.6
Q ss_pred HHHHHHhCCCeEEE---cCCC-ccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCE
Q 027287 43 LGKELVARNIDLVY---GGGS-VGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDA 118 (225)
Q Consensus 43 lG~~LA~~G~~lv~---GGg~-~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa 118 (225)
+-+.|-.....+|+ |||. .|.--.+++-+.+.|-.+++|.|.-+. .|....++ .=...-..|.+.+|+
T Consensus 78 I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg~~~~~-------nA~~~l~~L~~~~d~ 149 (304)
T cd02201 78 IKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEGKKRMR-------QAEEGLEELRKHVDT 149 (304)
T ss_pred HHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccchhHHH-------HHHHHHHHHHHhCCE
Confidence 34444445666665 5654 345555677788888888888542111 11100000 002334456678898
Q ss_pred EEEec
Q 027287 119 FIALP 123 (225)
Q Consensus 119 ~Ivlp 123 (225)
+|+++
T Consensus 150 ~ivid 154 (304)
T cd02201 150 LIVIP 154 (304)
T ss_pred EEEEe
Confidence 88887
No 205
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=33.85 E-value=59 Score=26.14 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCEEEEecCC--cccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchH-HHHHHHHHHHcCCCCccccCcE-
Q 027287 106 HQRKAEMAKHSDAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS-LLTFIDKAVEEGFISPNARHII- 181 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~IvlpGG--~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~-l~~~l~~~~~~gfi~~~~~~~i- 181 (225)
......++..||++++-+=- -||++++.... ...+++++++++.-+-+ . +.+.| .+.+
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~------~~~~~vil~GpS~~~~P~~------l~~~G------v~~v~ 114 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELA------RNAREVILYGPSAPLHPEA------LFDYG------VTYVG 114 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHT------TTSSEEEEESCCGGS-GGG------GCCTT-------SEEE
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhC------ccCCeEEEEecCchhhHHH------HHhCC------CCEEE
Confidence 45567788999988876543 49999998665 35789999987632222 1 11222 1222
Q ss_pred -EEcCCHHHHHHHHHh
Q 027287 182 -VSAPNAKELMNKMEE 196 (225)
Q Consensus 182 -~~~~d~ee~~~~l~~ 196 (225)
..+.|++.+++.+++
T Consensus 115 g~~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 115 GSRVVDPEKVLRAISE 130 (147)
T ss_dssp EEEES-HHHHHHHHCT
T ss_pred EEEEeCHHHHHHHHHc
Confidence 347899999999876
No 206
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=33.83 E-value=71 Score=29.73 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027287 116 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 153 (225)
Q Consensus 116 sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~ 153 (225)
+|+||+..| .-||+|-+..+.+.-. .+|||||.+.
T Consensus 101 ~dGvVItHG-TDTmeeTA~~L~l~l~--~~kPVVlTGa 135 (351)
T COG0252 101 VDGVVITHG-TDTMEETAFFLSLTLN--TPKPVVLTGA 135 (351)
T ss_pred CCeEEEeCC-CchHHHHHHHHHHHhc--CCCCEEEeCC
Confidence 388888875 7999999988876542 3899999764
No 207
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.82 E-value=2.5e+02 Score=26.36 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHh-----CCCeEEEcCCC--------------ccHHH-HHHHHHHhcCCeEEEEe
Q 027287 38 DAAIELGKELVA-----RNIDLVYGGGS--------------VGLMG-LISQAVYDGGRHVIGVI 82 (225)
Q Consensus 38 ~~A~~lG~~LA~-----~G~~lv~GGg~--------------~GlM~-a~a~gA~~aGG~viGIi 82 (225)
+....+.+.+.. .-..|||||+. .|-|+ +.++.+...|..|+.+.
T Consensus 168 ~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~ 232 (390)
T TIGR00521 168 TIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLIT 232 (390)
T ss_pred HHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 555666666644 24567888842 48675 45778888899998874
No 208
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=33.60 E-value=58 Score=27.94 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=24.1
Q ss_pred HHHHHHHhhCCEEEEecCC----cccHHHHHHHHHHHHhCCCCCcEE-EEe-CCCCch
Q 027287 107 QRKAEMAKHSDAFIALPGG----YGTLEELLEVITWAQLGIHDKPVG-LLN-VDGYYN 158 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpGG----~GTL~Ei~~a~~~~qlg~~~kPii-ll~-~~g~w~ 158 (225)
+.-..+++... ++|++|+ +.|=|+++..++ ..+ ...-++ +-+ .+|.|+
T Consensus 112 ~~i~~ll~~g~-VpV~~g~~g~~~~s~D~~a~~lA-~~l--~a~~li~~td~VdGvy~ 165 (233)
T TIGR02075 112 RKAIKHLEKGK-VVIFSGGTGNPFFTTDTAAALRA-IEI--NADVILKGTNGVDGVYT 165 (233)
T ss_pred HHHHHHHHCCC-EEEEECCCCCCCCCchHHHHHHH-HHc--CCCEEEEeecccCeEEc
Confidence 33334455555 5566555 455566665543 222 233344 456 677764
No 209
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=33.55 E-value=59 Score=25.64 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=20.6
Q ss_pred cCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 16 QSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 16 ~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
+....+|+|+|..+.+ ..||+.|.+.||.|+
T Consensus 7 ~~~~l~I~iIGaGrVG---------~~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVG---------TALARALARAGHEVV 37 (127)
T ss_dssp -----EEEEECTSCCC---------CHHHHHHHHTTSEEE
T ss_pred CCCccEEEEECCCHHH---------HHHHHHHHHCCCeEE
Confidence 4556789999766654 358889999999875
No 210
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.46 E-value=2.6e+02 Score=27.18 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=43.6
Q ss_pred HHHHHHHHHhC-CCeEEEcCCCc--cHHHHHHHHHHhcCCeEE------EEeCCccccCCCCCCCCceEeecCCHHHHHH
Q 027287 40 AIELGKELVAR-NIDLVYGGGSV--GLMGLISQAVYDGGRHVI------GVIPKTLMPREITGETVGEVKPVADMHQRKA 110 (225)
Q Consensus 40 A~~lG~~LA~~-G~~lv~GGg~~--GlM~a~a~gA~~aGG~vi------GIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~ 110 (225)
..++.++|.+. .-.|+.|+|-. |..+++.+=|-..|-.|+ |++|+. |+.+.-.+-...-...+.
T Consensus 196 i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~-------hp~~~G~~G~~~~~~~~~ 268 (572)
T PRK08979 196 IKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGT-------HKNSLGMLGMHGRYEANM 268 (572)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCC-------CcccccCCccCCCHHHHH
Confidence 34555666654 46666777642 677777666666777665 333322 221211110111123333
Q ss_pred HHHhhCCEEEEecCCccc
Q 027287 111 EMAKHSDAFIALPGGYGT 128 (225)
Q Consensus 111 ~mv~~sDa~IvlpGG~GT 128 (225)
.++.||.+|+++-..+.
T Consensus 269 -~~~~aD~vl~vG~~~~~ 285 (572)
T PRK08979 269 -AMHNADLIFGIGVRFDD 285 (572)
T ss_pred -HHHhCCEEEEEcCCCCc
Confidence 55789999999865443
No 211
>PRK05867 short chain dehydrogenase; Provisional
Probab=33.23 E-value=2.2e+02 Score=23.73 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=22.4
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCC
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGG 59 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg 59 (225)
.+++-|.|+++. ...++++.|+++|+.|+..+.
T Consensus 9 ~k~vlVtGas~g--------IG~~ia~~l~~~G~~V~~~~r 41 (253)
T PRK05867 9 GKRALITGASTG--------IGKRVALAYVEAGAQVAIAAR 41 (253)
T ss_pred CCEEEEECCCch--------HHHHHHHHHHHCCCEEEEEcC
Confidence 356777765442 245678888889999876554
No 212
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=33.15 E-value=66 Score=27.52 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=20.2
Q ss_pred EeCCCCC-------CChHHHHHHHHHHHHHHh-CCCeEEEcCCC
Q 027287 25 FCGSSAG-------KKSTYKDAAIELGKELVA-RNIDLVYGGGS 60 (225)
Q Consensus 25 fggs~~~-------~~~~~~~~A~~lG~~LA~-~G~~lv~GGg~ 60 (225)
||||... +.+...+.|+.+.++... ....||.|||+
T Consensus 7 lGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~ 50 (231)
T cd04254 7 LSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGN 50 (231)
T ss_pred eCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCc
Confidence 7787764 223334455555544322 24567899986
No 213
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=33.00 E-value=95 Score=27.18 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHH
Q 027287 128 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFI 164 (225)
Q Consensus 128 TL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l 164 (225)
||+.+++......-.--..||+|+ |||++++..=
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~yG 111 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRYG 111 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhhh
Confidence 788888777443322246899998 6999997653
No 214
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=32.93 E-value=1.1e+02 Score=26.64 Aligned_cols=71 Identities=6% Similarity=0.020 Sum_probs=43.4
Q ss_pred HHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHh-CCCCCcEEEEeCCC-CchHHHHHHHHHHHcCCCCccccCcEEE
Q 027287 106 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDG-YYNSLLTFIDKAVEEGFISPNARHIIVS 183 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~ql-g~~~kPiill~~~g-~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 183 (225)
.+|....+..||.+||++ |=-.+.-+..+.+. ..++.|++++|.+. .++. ..-+++
T Consensus 169 ~~~~~~~~~~aDl~lviG----TSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~------------------~~~~~i 226 (244)
T PRK14138 169 LREAIRLSSKASLMIVMG----SSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD------------------IATLKY 226 (244)
T ss_pred HHHHHHHHhcCCEEEEeC----cCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc------------------ceeEEE
Confidence 466666778899999954 33223323332222 13578999999741 1111 123678
Q ss_pred cCCHHHHHHHHHhhc
Q 027287 184 APNAKELMNKMEEYF 198 (225)
Q Consensus 184 ~~d~ee~~~~l~~~~ 198 (225)
..+.+|++..|.++.
T Consensus 227 ~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 227 NMDVVEFANRVMSEG 241 (244)
T ss_pred eCCHHHHHHHHHHHh
Confidence 889999999987753
No 215
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.71 E-value=2.2e+02 Score=21.66 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHH---hcCC-eEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhh
Q 027287 40 AIELGKELVARNIDLVYGGGSVGLMGLISQAVY---DGGR-HVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKH 115 (225)
Q Consensus 40 A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~---~aGG-~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~ 115 (225)
..++++.+.+.....++|-| +....+..+++ +.++ .+.++...++ .| . ...++..
T Consensus 3 ~~~~a~~~~~~~~i~~~G~G--~s~~~a~e~~~kl~e~~~i~~~~~~~~e~-----~h-------------g-~~~~~~~ 61 (153)
T cd05009 3 IKELAEKLKEAKSFYVLGRG--PNYGTALEGALKLKETSYIHAEAYSAGEF-----KH-------------G-PIALVDE 61 (153)
T ss_pred HHHHHHHHhccCcEEEEcCC--CCHHHHHHHHHHHHHHHhhcceeccHHHh-----cc-------------C-hhhhccC
Confidence 45677788887788888876 34455555544 4443 4444322111 11 1 1224455
Q ss_pred CCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027287 116 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 153 (225)
Q Consensus 116 sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~ 153 (225)
.|.+|++-+.-.|-+++..+....+ ..+.|++++..
T Consensus 62 ~~~vi~is~~g~t~~~~~~~~~~~~--~~~~~vi~it~ 97 (153)
T cd05009 62 GTPVIFLAPEDRLEEKLESLIKEVK--ARGAKVIVITD 97 (153)
T ss_pred CCcEEEEecCChhHHHHHHHHHHHH--HcCCEEEEEec
Confidence 6666666644466666665654333 34578887754
No 216
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=32.68 E-value=2.6e+02 Score=23.37 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=22.1
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGG 58 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 58 (225)
+.++|.|.|+++. ....+++.|+++|+.++--+
T Consensus 14 ~~k~vlItGas~g--------IG~~ia~~l~~~G~~v~~~~ 46 (258)
T PRK06935 14 DGKVAIVTGGNTG--------LGQGYAVALAKAGADIIITT 46 (258)
T ss_pred CCCEEEEeCCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 3457777765542 34567888888999877544
No 217
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=32.65 E-value=75 Score=31.85 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=34.6
Q ss_pred hhhcccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHH
Q 027287 11 MEMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGL 66 (225)
Q Consensus 11 ~~~~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a 66 (225)
........-..|+|+|||- +.|.+.|..+.+.|.+.|...|+=.|+.+-++.
T Consensus 538 ~~~a~~~sga~i~viCssD----~~Y~~~a~~~~~al~~ag~~~v~lAG~p~~~~~ 589 (619)
T TIGR00642 538 VVEAFKKAGAQVAVLCSSD----KVYAQQGLEVAKALKAAGAKALYLAGAFKEFGD 589 (619)
T ss_pred HHHHHHhcCCCEEEEeCCC----cchHHHHHHHHHHHHhCCCCEEEEeCCCcchhh
Confidence 3344444556799999754 568899999999996666554444444465554
No 218
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.63 E-value=1e+02 Score=28.00 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=34.6
Q ss_pred hhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC--CCc-----hHHHHHHHHHHHcCC
Q 027287 114 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLTFIDKAVEEGF 172 (225)
Q Consensus 114 ~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~--g~w-----~~l~~~l~~~~~~gf 172 (225)
+.+|.+|++ ||=||+-..+..+ ...++||+=+|.+ ||. +++.+.++++.+..|
T Consensus 67 ~~~Dlvi~i-GGDGTlL~aar~~-----~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 67 SSMKFAIVL-GGDGTVLSAARQL-----APCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred cCcCEEEEE-eCcHHHHHHHHHh-----cCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc
Confidence 356766655 7789998776544 2457899888764 565 566666666665443
No 219
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=32.61 E-value=2.4e+02 Score=23.49 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=22.3
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCC
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGG 59 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg 59 (225)
.+++-|.|+|+. ..+.+++.|+++|+.++.-+.
T Consensus 9 ~k~~lItGas~g--------iG~~ia~~L~~~G~~vvl~~r 41 (254)
T PRK08085 9 GKNILITGSAQG--------IGFLLATGLAEYGAEIIINDI 41 (254)
T ss_pred CCEEEEECCCCh--------HHHHHHHHHHHcCCEEEEEcC
Confidence 456777766542 345677778888998876554
No 220
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=32.38 E-value=96 Score=29.19 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCC-eEEEEeCCccccCCCCCCCCceEe-------ecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHH
Q 027287 64 MGLISQAVYDGGR-HVIGVIPKTLMPREITGETVGEVK-------PVADMHQRKAEMAKHSDAFIALPGGYGTLEELLE 134 (225)
Q Consensus 64 M~a~a~gA~~aGG-~viGIiP~~~~~~e~~~~~~~~~~-------~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~ 134 (225)
-..+.+.-.+.|- .+.||++.-....+.+..--.+.+ +.....++..-+++.||++|..+--+|+-.++..
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~~~~~~ 357 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAARSGVIG 357 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCCCCchh
Confidence 3445555555553 568887765433222111111222 2234468888999999999998766666555543
No 221
>PRK00625 shikimate kinase; Provisional
Probab=32.35 E-value=1.6e+02 Score=24.13 Aligned_cols=85 Identities=19% Similarity=0.124 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEe-C-Cccc----cCCCCCCCCceEeecCCHHHHH
Q 027287 36 YKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVI-P-KTLM----PREITGETVGEVKPVADMHQRK 109 (225)
Q Consensus 36 ~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIi-P-~~~~----~~e~~~~~~~~~~~~~~m~~Rk 109 (225)
|.+...++-+.|...+..|.+|||. ++..-+...+..+|.|+-+- | +... .+......-..-.+..-+..|.
T Consensus 59 fr~~E~~~l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~ 136 (173)
T PRK00625 59 FCREEFLALTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRI 136 (173)
T ss_pred HHHHHHHHHHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHH
Confidence 4333334445555567777788874 45555555677788877762 2 1111 1111110000001122346888
Q ss_pred HHHHhhCCEEEEe
Q 027287 110 AEMAKHSDAFIAL 122 (225)
Q Consensus 110 ~~mv~~sDa~Ivl 122 (225)
...-+.||..|-.
T Consensus 137 ~~Y~~~ad~~i~~ 149 (173)
T PRK00625 137 DRMRSIADYIFSL 149 (173)
T ss_pred HHHHHHCCEEEeC
Confidence 8777779987643
No 222
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=32.03 E-value=1.5e+02 Score=26.07 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=40.5
Q ss_pred HHhhCCEEEEecC--CcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 027287 112 MAKHSDAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKE 189 (225)
Q Consensus 112 mv~~sDa~IvlpG--G~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee 189 (225)
+...||++|...- |+|. =+.|+++ +++|+|..+.+..-.. ++ .+.....++-.+|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~--~~lEAma------~G~PvI~~~~~~g~~~-------~v-----~~~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGL--SLMEALS------HGLPVISYDVNYGPSE-------II-----EDGENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccCh--HHHHHHh------CCCCEEEecCCCCcHH-------Hc-----ccCCCceEeCCCcHHH
Confidence 4567998887652 3442 2555553 6899999875421122 11 1222333444458998
Q ss_pred HHHHHHhhcCC
Q 027287 190 LMNKMEEYFPQ 200 (225)
Q Consensus 190 ~~~~l~~~~~~ 200 (225)
+.+.|.++...
T Consensus 335 la~~i~~ll~~ 345 (372)
T cd04949 335 LAEAIIELLND 345 (372)
T ss_pred HHHHHHHHHcC
Confidence 88888877543
No 223
>PRK08105 flavodoxin; Provisional
Probab=31.87 E-value=1.1e+02 Score=24.32 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=20.5
Q ss_pred HHHHHHHHHhC-------CCeEEEcCCC------ccHHHHHHHHHHhcCCeEEE
Q 027287 40 AIELGKELVAR-------NIDLVYGGGS------VGLMGLISQAVYDGGRHVIG 80 (225)
Q Consensus 40 A~~lG~~LA~~-------G~~lv~GGg~------~GlM~a~a~gA~~aGG~viG 80 (225)
+.++-..|.+. .|. |.|-|. .+.+..+.+-..+.|+..++
T Consensus 68 ~~~f~~~l~~~~~~l~~~~~a-vfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 68 IVPLFQALKDTAGYQPNLRYG-VIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred HHHHHHHHHhcCcccCCCEEE-EEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 44555554432 344 456654 23444444444457777766
No 224
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=31.52 E-value=84 Score=26.61 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=25.9
Q ss_pred hhcccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 027287 12 EMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYG 57 (225)
Q Consensus 12 ~~~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 57 (225)
++.-+.++++|.|+|+++. ..+.+.+.|.++||.|+.-
T Consensus 10 ~~~~~~~~~~ilItGasG~--------iG~~l~~~L~~~g~~V~~~ 47 (251)
T PLN00141 10 EDAENVKTKTVFVAGATGR--------TGKRIVEQLLAKGFAVKAG 47 (251)
T ss_pred cccccccCCeEEEECCCcH--------HHHHHHHHHHhCCCEEEEE
Confidence 4555666788999976653 2456777777888887643
No 225
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=31.43 E-value=1.6e+02 Score=23.51 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=28.1
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGG 58 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 58 (225)
+++|.++|-......| .|+.+.+.++..++.+-+.|
T Consensus 2 ~~kVLFVC~gN~cRSp----mAE~l~~~~~~~~~~v~SAG 37 (139)
T COG0394 2 MMKVLFVCTGNICRSP----MAEALLRHLAPDNVEVDSAG 37 (139)
T ss_pred CceEEEEcCCCcccCH----HHHHHHHHhccCCeEEECCc
Confidence 5688999977776544 57889999988888877766
No 226
>PLN02275 transferase, transferring glycosyl groups
Probab=31.40 E-value=3.7e+02 Score=24.24 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=40.6
Q ss_pred HHHHHHHHhhCCEEEEec-C--CcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEE
Q 027287 106 HQRKAEMAKHSDAFIALP-G--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIV 182 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~Ivlp-G--G~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~ 182 (225)
.+.-..++..||++|+.. . |.|--.=+.|+++ .++||+..+.+| ..+ ++..| ....
T Consensus 297 ~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA------~G~PVVa~~~gg----~~e----iv~~g-----~~G~-- 355 (371)
T PLN02275 297 AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSC----IGE----LVKDG-----KNGL-- 355 (371)
T ss_pred HHHHHHHHHhCCEEEEeccccccccccHHHHHHHH------CCCCEEEecCCC----hHH----HccCC-----CCeE--
Confidence 344456778999998631 2 2333344566664 689999987654 222 22221 1122
Q ss_pred EcCCHHHHHHHHHhh
Q 027287 183 SAPNAKELMNKMEEY 197 (225)
Q Consensus 183 ~~~d~ee~~~~l~~~ 197 (225)
+++|++++.+.|.+.
T Consensus 356 lv~~~~~la~~i~~l 370 (371)
T PLN02275 356 LFSSSSELADQLLEL 370 (371)
T ss_pred EECCHHHHHHHHHHh
Confidence 235788888877653
No 227
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=31.24 E-value=2.5e+02 Score=27.37 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=47.9
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHH-HH
Q 027287 54 LVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLE-EL 132 (225)
Q Consensus 54 lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~-Ei 132 (225)
+|.|.|+ +=..+++-+...|.+|+.+-++.....+.....+ + ..++. -+++.||.||..+|.-+.++ |.
T Consensus 258 gVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~-~---~~~le----ell~~ADIVI~atGt~~iI~~e~ 327 (476)
T PTZ00075 258 VVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAMEGY-Q---VVTLE----DVVETADIFVTATGNKDIITLEH 327 (476)
T ss_pred EEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc-e---eccHH----HHHhcCCEEEECCCcccccCHHH
Confidence 4567664 3345677777778888776222111000001111 1 12332 24678999999998777775 45
Q ss_pred HHHHHHHHhCCCCCcEEEEeCCCCch
Q 027287 133 LEVITWAQLGIHDKPVGLLNVDGYYN 158 (225)
Q Consensus 133 ~~a~~~~qlg~~~kPiill~~~g~w~ 158 (225)
+..+ +.-.+|.|.+.+..
T Consensus 328 ~~~M--------KpGAiLINvGr~d~ 345 (476)
T PTZ00075 328 MRRM--------KNNAIVGNIGHFDN 345 (476)
T ss_pred Hhcc--------CCCcEEEEcCCCch
Confidence 4433 34467788866643
No 228
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=31.17 E-value=1.5e+02 Score=28.30 Aligned_cols=87 Identities=23% Similarity=0.289 Sum_probs=45.1
Q ss_pred CeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHH-
Q 027287 52 IDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLE- 130 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~- 130 (225)
..+|.|.|+.| ..++..+...|.+|+.+-.+.....+.....+ + ..++. -.++.+|.+|...|..++++
T Consensus 214 ~VlViG~G~IG--~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~~ 283 (425)
T PRK05476 214 VVVVAGYGDVG--KGCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVITA 283 (425)
T ss_pred EEEEECCCHHH--HHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHHH
Confidence 35567776544 34566677778887776322111111111111 1 12332 23468999999887666665
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeCCCC
Q 027287 131 ELLEVITWAQLGIHDKPVGLLNVDGY 156 (225)
Q Consensus 131 Ei~~a~~~~qlg~~~kPiill~~~g~ 156 (225)
+.+..+ ++-.+++|.+.+
T Consensus 284 ~~~~~m--------K~GailiNvG~~ 301 (425)
T PRK05476 284 EHMEAM--------KDGAILANIGHF 301 (425)
T ss_pred HHHhcC--------CCCCEEEEcCCC
Confidence 333332 344566676433
No 229
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=31.14 E-value=1.2e+02 Score=26.09 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=40.7
Q ss_pred HHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 027287 110 AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKE 189 (225)
Q Consensus 110 ~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee 189 (225)
..++..||++|.-...-|.-.=++|+++ .++|+|..+..+ ..++ +.+ ...++-.+|+++
T Consensus 257 ~~~~~~ad~~v~~s~~e~~~~~~~Ea~a------~G~PvI~~~~~~-~~e~------------i~~--~g~~~~~~~~~~ 315 (360)
T cd04951 257 AAYYNAADLFVLSSAWEGFGLVVAEAMA------CELPVVATDAGG-VREV------------VGD--SGLIVPISDPEA 315 (360)
T ss_pred HHHHHhhceEEecccccCCChHHHHHHH------cCCCEEEecCCC-hhhE------------ecC--CceEeCCCCHHH
Confidence 3466889987765432122223556663 589999876542 2221 111 334556789999
Q ss_pred HHHHHHhhc
Q 027287 190 LMNKMEEYF 198 (225)
Q Consensus 190 ~~~~l~~~~ 198 (225)
+.+.|.+..
T Consensus 316 ~~~~i~~ll 324 (360)
T cd04951 316 LANKIDEIL 324 (360)
T ss_pred HHHHHHHHH
Confidence 988888874
No 230
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=31.13 E-value=1.3e+02 Score=24.04 Aligned_cols=75 Identities=23% Similarity=0.165 Sum_probs=47.8
Q ss_pred HHHHHhcCCeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCc
Q 027287 68 SQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKP 147 (225)
Q Consensus 68 a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kP 147 (225)
..++.+.||.++.+-|.... .. ...++.+=-+.|-..+|++|+=.-.-|+++|+.+.. ..|
T Consensus 58 e~A~~~LGg~~i~~~~~~s~---~~--------k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~--------~vP 118 (142)
T PF02729_consen 58 EAAANRLGGHVIYLDPSTSS---LG--------KGESLEDTARVLSRYVDAIVIRHPSHGALEELAEHS--------SVP 118 (142)
T ss_dssp HHHHHHTTCEEEEEETTTSS---TT--------TSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHC--------SSE
T ss_pred HHhhhcceeEEEEECccccc---Cc--------CCCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhc--------cCC
Confidence 34567889999998654321 00 123343334467788999999999999999997543 689
Q ss_pred EEEEeCCCCchHHHH
Q 027287 148 VGLLNVDGYYNSLLT 162 (225)
Q Consensus 148 iill~~~g~w~~l~~ 162 (225)
||=... ..+-|--.
T Consensus 119 VINa~~-~~~HPtQa 132 (142)
T PF02729_consen 119 VINAGD-DHEHPTQA 132 (142)
T ss_dssp EEEEEE-SSBSHHHH
T ss_pred eEcCcC-CCCChHHH
Confidence 874332 34444433
No 231
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=31.00 E-value=69 Score=26.29 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=22.4
Q ss_pred hhCCEEEEecCC-----cccHHHHHHHHHHHHh-CCCCCcEEEEeCC
Q 027287 114 KHSDAFIALPGG-----YGTLEELLEVITWAQL-GIHDKPVGLLNVD 154 (225)
Q Consensus 114 ~~sDa~IvlpGG-----~GTL~Ei~~a~~~~ql-g~~~kPiill~~~ 154 (225)
..+|.+|+.+|| ..+.......+.+... ...++|+++++.+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 567778888775 2222222111222222 2468999999753
No 232
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=30.97 E-value=5.2e+02 Score=25.31 Aligned_cols=146 Identities=21% Similarity=0.206 Sum_probs=83.8
Q ss_pred HhhhcccCCcceEEEEeCCCCCCCh----------------HHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHh
Q 027287 10 EMEMNNQSKFNRICVFCGSSAGKKS----------------TYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYD 73 (225)
Q Consensus 10 ~~~~~~~~~~~~V~Vfggs~~~~~~----------------~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~ 73 (225)
..+....+-..+|+|+|-.+....- .-.+.++..-+.|.++|+.+|-|++. +++-|.+
T Consensus 88 ~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~~------~~~~A~~ 161 (526)
T TIGR02329 88 QALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAGL------ITDLAEQ 161 (526)
T ss_pred HHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEECChH------HHHHHHH
Confidence 3344555556789998766554100 00134566677888899999998753 4577888
Q ss_pred cCCeEEEEeCCcccc-------------C---C----------CCC-CCCceEeecC-CH-HHHHHH-HHhhCCEEEEec
Q 027287 74 GGRHVIGVIPKTLMP-------------R---E----------ITG-ETVGEVKPVA-DM-HQRKAE-MAKHSDAFIALP 123 (225)
Q Consensus 74 aGG~viGIiP~~~~~-------------~---e----------~~~-~~~~~~~~~~-~m-~~Rk~~-mv~~sDa~Ivlp 123 (225)
.|-..|=|...+... + . ... ..+.+++-.+ .| ..|+.+ -+..+|.-|.+-
T Consensus 162 ~gl~~ili~s~esi~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~ 241 (526)
T TIGR02329 162 AGLHGVFLYSADSVRQAFDDALDVARATRLRQAATLRSATRNQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLIL 241 (526)
T ss_pred cCCceEEEecHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhccccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 888766553321000 0 0 000 0011122111 12 122222 345678999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHH
Q 027287 124 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL 161 (225)
Q Consensus 124 GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~ 161 (225)
|-.||==|.+.-.-..+-...+.|.+.+|...+-+.++
T Consensus 242 GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ll 279 (526)
T TIGR02329 242 GESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLL 279 (526)
T ss_pred CCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHH
Confidence 99999888875553333334678999999876655443
No 233
>PRK13059 putative lipid kinase; Reviewed
Probab=30.93 E-value=1e+02 Score=27.30 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=26.1
Q ss_pred HHHhCCC-eEEEcCCCccHHHHHHHHHHhcC-CeEEEEeCC
Q 027287 46 ELVARNI-DLVYGGGSVGLMGLISQAVYDGG-RHVIGVIPK 84 (225)
Q Consensus 46 ~LA~~G~-~lv~GGg~~GlM~a~a~gA~~aG-G~viGIiP~ 84 (225)
..++.++ .||..|| .|--..++.+..+.+ ...+||+|.
T Consensus 51 ~~~~~~~d~vi~~GG-DGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 51 KDIDESYKYILIAGG-DGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred HHhhcCCCEEEEECC-ccHHHHHHHHHHhcCCCCcEEEECC
Confidence 3344443 4445566 599999999888765 456999995
No 234
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=30.85 E-value=5.1e+02 Score=25.16 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHHHHHHhC-CCeEEEcCCCccHHHHHHHHHHhcCCeEEE------EeCCccccCCCCCCCCceEeecCCHHHHHHHH
Q 027287 40 AIELGKELVAR-NIDLVYGGGSVGLMGLISQAVYDGGRHVIG------VIPKTLMPREITGETVGEVKPVADMHQRKAEM 112 (225)
Q Consensus 40 A~~lG~~LA~~-G~~lv~GGg~~GlM~a~a~gA~~aGG~viG------IiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~m 112 (225)
..++.+.|.+. .-.|+.|+|-.+.-+++.+=|-..|-.|+- ++|+. |+.+.-..-.......+ ..
T Consensus 191 i~~~~~~L~~AkrPvii~G~g~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~-------hp~~~G~~G~~~~~~~~-~~ 262 (574)
T PRK09124 191 LRKLAALLNGSSNITLLCGSGCAGAHDELVALAETLKAPIVHALRGKEHVEYD-------NPYDVGMTGLIGFSSGY-HA 262 (574)
T ss_pred HHHHHHHHHcCCCCEEEECcChHhHHHHHHHHHHHhCCceEEcccccccCCCC-------CcccccCCccCCCHHHH-HH
Confidence 35566777763 455555655334444444434445655542 22211 11111111001112223 45
Q ss_pred HhhCCEEEEecCCcc
Q 027287 113 AKHSDAFIALPGGYG 127 (225)
Q Consensus 113 v~~sDa~IvlpGG~G 127 (225)
++.||.+|+++....
T Consensus 263 ~~~aDlvl~lG~~~~ 277 (574)
T PRK09124 263 MMNCDTLLMLGTDFP 277 (574)
T ss_pred HHhCCEEEEECCCCC
Confidence 579999999997654
No 235
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=30.69 E-value=68 Score=22.70 Aligned_cols=40 Identities=23% Similarity=0.432 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 027287 157 YNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEY 197 (225)
Q Consensus 157 w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~ 197 (225)
|+.+...++.+.+.|++.. ....+.+++.-.++++.++++
T Consensus 33 ~~~~~~yL~~L~~~gLI~~-~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIKK-KDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEE-ETTEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeC-CCCEEEECccHHHHHHHHHHH
Confidence 6677888899999999944 677889999999999988875
No 236
>PRK06443 chorismate mutase; Validated
Probab=30.45 E-value=86 Score=26.47 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeC
Q 027287 36 YKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIP 83 (225)
Q Consensus 36 ~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP 83 (225)
|...|+.||..+...||.|+-- -.....-.|...+||+++-=.|
T Consensus 92 y~~~~~sl~~~~~~~g~~v~i~----~~~~~~~~~~~~~~~~~~~~~~ 135 (177)
T PRK06443 92 YDSLILSLGLILSRPGIEIYIE----DNPDSIEEGCSKAGGHVVIGLP 135 (177)
T ss_pred hHHHHHHHHHHHhcCCcEEEec----cCchHHHHhhhhcCCeEecCCC
Confidence 7789999999999999998732 3567777788889998753334
No 237
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=30.31 E-value=2.2e+02 Score=20.92 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=36.8
Q ss_pred HHHHHHhhCCEEEEec-CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 027287 108 RKAEMAKHSDAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPN 186 (225)
Q Consensus 108 Rk~~mv~~sDa~Ivlp-GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 186 (225)
...-++..+|+.|..- =+.|+-.-+++++ ..++|++..+. + +..+ ....... +.+.+|
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~------~~G~pvi~~~~-~-~~~~------------~~~~~~~-~~~~~~ 121 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAM------AAGKPVIASDN-G-AEGI------------VEEDGCG-VLVAND 121 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHH------CTT--EEEEHH-H-CHCH------------S---SEE-EE-TT-
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHH------HhCCCEEECCc-c-hhhh------------eeecCCe-EEECCC
Confidence 3455567789877532 1335666677666 37899998764 2 2222 1112223 344999
Q ss_pred HHHHHHHHHhhc
Q 027287 187 AKELMNKMEEYF 198 (225)
Q Consensus 187 ~ee~~~~l~~~~ 198 (225)
++++.+.|.+..
T Consensus 122 ~~~l~~~i~~l~ 133 (135)
T PF13692_consen 122 PEELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 238
>PRK07308 flavodoxin; Validated
Probab=30.30 E-value=1.9e+02 Score=22.42 Aligned_cols=18 Identities=6% Similarity=-0.197 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcCCeEEE
Q 027287 63 LMGLISQAVYDGGRHVIG 80 (225)
Q Consensus 63 lM~a~a~gA~~aGG~viG 80 (225)
.+..+.+-..+.|..+++
T Consensus 101 a~~~~~~~l~~~g~~~~~ 118 (146)
T PRK07308 101 SVDDFEAQFALTGATKGA 118 (146)
T ss_pred HHHHHHHHHHHcCCeEcc
Confidence 333333333445665544
No 239
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=30.25 E-value=53 Score=30.05 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=33.3
Q ss_pred CCchHHHHHHHHHHHcCCCCccccCc---EEEcCCHHHHHHHHHhh
Q 027287 155 GYYNSLLTFIDKAVEEGFISPNARHI---IVSAPNAKELMNKMEEY 197 (225)
Q Consensus 155 g~w~~l~~~l~~~~~~gfi~~~~~~~---i~~~~d~ee~~~~l~~~ 197 (225)
.+|+-+..-+..|+.+|.|+++..+. -++..+++|+-+.+++-
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~ 243 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEE 243 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcC
Confidence 47888988899999999999998865 47889999999988874
No 240
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=30.24 E-value=1.6e+02 Score=28.04 Aligned_cols=150 Identities=16% Similarity=0.250 Sum_probs=75.9
Q ss_pred hHHHHHhhhc--ccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEe
Q 027287 5 MEMEMEMEMN--NQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVI 82 (225)
Q Consensus 5 ~~~~~~~~~~--~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIi 82 (225)
||-|.+.+.. -....+.|+|.|||... +.. + +-+.|.++=-.|+.|||- +...+.+-|.-||=.
T Consensus 175 mekEl~~L~k~l~~p~rP~vaIlGGaKVs--dki-~----vienLl~kaD~liigGgm-------a~tFl~A~G~~vG~s 240 (395)
T COG0126 175 MEKELDALGKALENPERPFVAILGGAKVS--DKI-G----VIENLLKKADKLIIGGGM-------ANTFLKAQGYDVGKS 240 (395)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeeccccc--hHH-H----HHHHHHHhcCeEEecchH-------HHHHHHHhccccchH
Confidence 5667777665 33455789999998873 222 2 233333333445666642 355566666666621
Q ss_pred C-Ccccc---CCC---CCCC---CceEeecCCHHHHHHHHH---hhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEE
Q 027287 83 P-KTLMP---REI---TGET---VGEVKPVADMHQRKAEMA---KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVG 149 (225)
Q Consensus 83 P-~~~~~---~e~---~~~~---~~~~~~~~~m~~Rk~~mv---~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPii 149 (225)
- +...- ++. .... -.+.++...+. |..... +..+...++==|--|...+.+.+.-.++=..+-|+.
T Consensus 241 l~E~~~~~~Ak~ll~k~~~~I~lPvD~~v~~~f~-~~~~~~~~~~i~~~~~~lDIGp~Ti~~~~~~i~~AktivwNGP~G 319 (395)
T COG0126 241 LVEFDLIDGAKELLEKAKDKIVLPVDVVVAKEFS-RDAPATVKLEIPDDLMILDIGPKTIELFAEIIKGAKTIVWNGPMG 319 (395)
T ss_pred HHHHHHHHHHHHHHHHhCCcEECcceeEEccccc-cccccccccCCCCCccccccCHHHHHHHHHHHhhCCEEEEeCCcc
Confidence 0 10000 000 0000 01223333331 111000 233444455557788888888875433333567777
Q ss_pred EEeCCCCchHHHHHHHHHHH
Q 027287 150 LLNVDGYYNSLLTFIDKAVE 169 (225)
Q Consensus 150 ll~~~g~w~~l~~~l~~~~~ 169 (225)
++..+.|-..-...++.+.+
T Consensus 320 VfE~~~Fa~GT~~v~~aia~ 339 (395)
T COG0126 320 VFEFENFAKGTEEVAKAIAK 339 (395)
T ss_pred ceecchhhhhHHHHHHHHHh
Confidence 77766777777776666554
No 241
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=30.23 E-value=1.6e+02 Score=27.90 Aligned_cols=70 Identities=24% Similarity=0.217 Sum_probs=38.9
Q ss_pred CeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHH
Q 027287 52 IDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEE 131 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~E 131 (225)
..+|.|.|+.|.. ++..+...|.+|+.+-.+.....+.....+ . ..++. . .+..+|.+|...|..+.+++
T Consensus 197 ~VvViG~G~IG~~--vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~---v~~le---e-al~~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 197 TVVVAGYGWCGKG--IAMRARGMGARVIVTEVDPIRALEAAMDGF-R---VMTME---E-AAKIGDIFITATGNKDVIRG 266 (406)
T ss_pred EEEEECCCHHHHH--HHHHHhhCcCEEEEEeCChhhHHHHHhcCC-E---eCCHH---H-HHhcCCEEEECCCCHHHHHH
Confidence 4456787765544 556677778888887322111111011111 1 12332 2 35789999999988787764
No 242
>PRK07308 flavodoxin; Validated
Probab=30.21 E-value=70 Score=25.00 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=17.6
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCC
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARNI 52 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~ 52 (225)
.|.|+.+|..++.. +.|+.+++.|.+.|+
T Consensus 3 ~~~IvY~S~tGnTe---~iA~~ia~~l~~~g~ 31 (146)
T PRK07308 3 LAKIVYASMTGNTE---EIADIVADKLRELGH 31 (146)
T ss_pred eEEEEEECCCchHH---HHHHHHHHHHHhCCC
Confidence 45666667766433 456777777766554
No 243
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=30.10 E-value=1.6e+02 Score=22.66 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=19.1
Q ss_pred CEEEEecCCcccHHHH---HHHHHHHH-hCCCCCcEEEEeC
Q 027287 117 DAFIALPGGYGTLEEL---LEVITWAQ-LGIHDKPVGLLNV 153 (225)
Q Consensus 117 Da~IvlpGG~GTL~Ei---~~a~~~~q-lg~~~kPiill~~ 153 (225)
|+ |++|||.++...+ -....|.+ ...+.|||..+-.
T Consensus 64 D~-liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~ 103 (142)
T cd03132 64 DA-VVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGE 103 (142)
T ss_pred CE-EEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCc
Confidence 55 5557787765421 12223332 2346899987643
No 244
>PRK08264 short chain dehydrogenase; Validated
Probab=29.92 E-value=3.1e+02 Score=22.42 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=8.7
Q ss_pred hCCEEEEecCC
Q 027287 115 HSDAFIALPGG 125 (225)
Q Consensus 115 ~sDa~IvlpGG 125 (225)
.-|++|-..|.
T Consensus 73 ~id~vi~~ag~ 83 (238)
T PRK08264 73 DVTILVNNAGI 83 (238)
T ss_pred CCCEEEECCCc
Confidence 35899988886
No 245
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=29.80 E-value=92 Score=27.33 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
++|.|+||+...-.+-| -++|.|+++|+.+.
T Consensus 61 ~~V~VlcG~GNNGGDGl-----v~AR~L~~~G~~V~ 91 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGL-----VAARHLAHFGYEVT 91 (246)
T ss_pred CeEEEEECCCCCchhHH-----HHHHHHHHCCCeEE
Confidence 57999998876434543 47778888888653
No 246
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=29.78 E-value=2.3e+02 Score=25.62 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHhhCCEEEEe--cCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEc
Q 027287 107 QRKAEMAKHSDAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSA 184 (225)
Q Consensus 107 ~Rk~~mv~~sDa~Ivl--pGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 184 (225)
+....+...||++|.. +.|.|. =+.|+++ .++|||.-+..|. .++ +.......++-.
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g~-~e~------------i~~~~~G~lv~~ 350 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAPV-REV------------ITDGENGLLVDF 350 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCCc-hhh------------cccCCceEEcCC
Confidence 3444566889998864 334442 2456663 6899998776432 221 111222334445
Q ss_pred CCHHHHHHHHHhhcC
Q 027287 185 PNAKELMNKMEEYFP 199 (225)
Q Consensus 185 ~d~ee~~~~l~~~~~ 199 (225)
+|++++.+.|.+...
T Consensus 351 ~d~~~la~~i~~ll~ 365 (396)
T cd03818 351 FDPDALAAAVIELLD 365 (396)
T ss_pred CCHHHHHHHHHHHHh
Confidence 689988888877654
No 247
>PRK10494 hypothetical protein; Provisional
Probab=29.73 E-value=1.2e+02 Score=26.68 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=7.4
Q ss_pred CCEEEEecCCc
Q 027287 116 SDAFIALPGGY 126 (225)
Q Consensus 116 sDa~IvlpGG~ 126 (225)
+|++|||+||.
T Consensus 79 ~d~IVVLGgG~ 89 (259)
T PRK10494 79 VDYIVVLGGGY 89 (259)
T ss_pred CCEEEEcCCCc
Confidence 66777777664
No 248
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=29.71 E-value=61 Score=30.81 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCC----------ccHHHHHHHHHHhcCCeEE
Q 027287 38 DAAIELGKELVARNIDLVYGGGS----------VGLMGLISQAVYDGGRHVI 79 (225)
Q Consensus 38 ~~A~~lG~~LA~~G~~lv~GGg~----------~GlM~a~a~gA~~aGG~vi 79 (225)
+-|+.|++.|.++|+.||+||-. .|+-+..+..+++.-+.++
T Consensus 291 ~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~ 342 (413)
T COG0112 291 KNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITV 342 (413)
T ss_pred HHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEee
Confidence 45677888888899999998732 2667777777777655543
No 249
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.64 E-value=1.5e+02 Score=25.03 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=8.8
Q ss_pred HHHHHHHHhcCCeEEEE
Q 027287 65 GLISQAVYDGGRHVIGV 81 (225)
Q Consensus 65 ~a~a~gA~~aGG~viGI 81 (225)
+++.+.+.+.|..++||
T Consensus 67 ~~~~~~~~~~~~PvlGi 83 (209)
T PRK13146 67 EAVIEAVLAAGRPFLGI 83 (209)
T ss_pred HHHHHHHHhCCCcEEEE
Confidence 34444444456666665
No 250
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=29.34 E-value=1.8e+02 Score=24.49 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=37.7
Q ss_pred HHHhhCCEEEEecC--C-cccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 027287 111 EMAKHSDAFIALPG--G-YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNA 187 (225)
Q Consensus 111 ~mv~~sDa~IvlpG--G-~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 187 (225)
-+...||++|.-.. | -.+ +.|++. .++|+|.-+..+ ...++ .+ ...++-.+|+
T Consensus 264 ~~~~~adi~v~ps~~e~~~~~---~~Ea~a------~g~PvI~~~~~~-~~e~~---~~-----------~g~~~~~~~~ 319 (365)
T cd03807 264 ALLNALDVFVLSSLSEGFPNV---LLEAMA------CGLPVVATDVGD-NAELV---GD-----------TGFLVPPGDP 319 (365)
T ss_pred HHHHhCCEEEeCCccccCCcH---HHHHHh------cCCCEEEcCCCC-hHHHh---hc-----------CCEEeCCCCH
Confidence 46688998775322 2 234 444452 579999876543 22221 11 2334455788
Q ss_pred HHHHHHHHhhcC
Q 027287 188 KELMNKMEEYFP 199 (225)
Q Consensus 188 ee~~~~l~~~~~ 199 (225)
+++.+.|.+...
T Consensus 320 ~~l~~~i~~l~~ 331 (365)
T cd03807 320 EALAEAIEALLA 331 (365)
T ss_pred HHHHHHHHHHHh
Confidence 888888877653
No 251
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.31 E-value=69 Score=29.24 Aligned_cols=28 Identities=39% Similarity=0.567 Sum_probs=20.1
Q ss_pred CCCeEEEcCCCccHHHHHHHHHHhcCCeE
Q 027287 50 RNIDLVYGGGSVGLMGLISQAVYDGGRHV 78 (225)
Q Consensus 50 ~G~~lv~GGg~~GlM~a~a~gA~~aGG~v 78 (225)
.+..|+||||. |+=++.+....+.|..+
T Consensus 38 g~~vLITGgg~-GlGr~ialefa~rg~~~ 65 (300)
T KOG1201|consen 38 GEIVLITGGGS-GLGRLIALEFAKRGAKL 65 (300)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHhCCeE
Confidence 56777788875 88777777777776643
No 252
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.18 E-value=1.4e+02 Score=26.88 Aligned_cols=51 Identities=29% Similarity=0.328 Sum_probs=32.2
Q ss_pred hCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC--CCc-----hHHHHHHHHHHHcC
Q 027287 115 HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLTFIDKAVEEG 171 (225)
Q Consensus 115 ~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~--g~w-----~~l~~~l~~~~~~g 171 (225)
.+|.+|++ ||=||+--.+..+ ...++||+=+|.+ ||. +++.+.++++.+..
T Consensus 64 ~~Dlvi~i-GGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 64 ISDFLISL-GGDGTLISLCRKA-----AEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCCEEEEE-CCCHHHHHHHHHh-----cCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCC
Confidence 46765554 7899987655433 2457998877764 565 55566666655433
No 253
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=29.04 E-value=1.1e+02 Score=31.26 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=24.7
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
++++|+|++|......+.=...|+++.+.|-+.||.++
T Consensus 450 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~ 487 (809)
T PRK14573 450 KKLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVS 487 (809)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEE
Confidence 44567775555544445445677788888877788765
No 254
>PLN02271 serine hydroxymethyltransferase
Probab=28.99 E-value=66 Score=32.05 Aligned_cols=42 Identities=29% Similarity=0.374 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCC----------ccHHHHHHHHHHhcCCeEE
Q 027287 38 DAAIELGKELVARNIDLVYGGGS----------VGLMGLISQAVYDGGRHVI 79 (225)
Q Consensus 38 ~~A~~lG~~LA~~G~~lv~GGg~----------~GlM~a~a~gA~~aGG~vi 79 (225)
+-|+.|++.|.++|+.||+||-. .|+.+..+..+++.-|.++
T Consensus 442 ~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~ 493 (586)
T PLN02271 442 KNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITL 493 (586)
T ss_pred HHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEe
Confidence 34667788888899999998731 3666677777776555443
No 255
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=28.99 E-value=70 Score=27.64 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=18.3
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHh
Q 027287 25 FCGSSAGKKSTYKDAAIELGKELVA 49 (225)
Q Consensus 25 fggs~~~~~~~~~~~A~~lG~~LA~ 49 (225)
||||...+.+.+.+.++++.++...
T Consensus 6 ~GGs~l~~~~~~~~~~~~I~~~~~~ 30 (244)
T cd04260 6 FGGTSVSTKERREQVAKKVKQAVDE 30 (244)
T ss_pred ECchhcCCHHHHHHHHHHHHHHHHC
Confidence 8999987666677777777776543
No 256
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=28.87 E-value=1.5e+02 Score=27.72 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=11.1
Q ss_pred hhCCEEEEecCCc
Q 027287 114 KHSDAFIALPGGY 126 (225)
Q Consensus 114 ~~sDa~IvlpGG~ 126 (225)
..+|++|+++||.
T Consensus 105 ~~~D~IiavGGGS 117 (395)
T PRK15454 105 SGCDGVIAFGGGS 117 (395)
T ss_pred cCcCEEEEeCChH
Confidence 4789999999985
No 257
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=28.85 E-value=2.5e+02 Score=24.78 Aligned_cols=68 Identities=21% Similarity=0.338 Sum_probs=40.6
Q ss_pred HHHhhCCEEEEec--CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHH
Q 027287 111 EMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAK 188 (225)
Q Consensus 111 ~mv~~sDa~Ivlp--GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~e 188 (225)
.+...||++|... .|+|.. +.|++. .++||+.-+..| ..+++ .. .....++-.+|++
T Consensus 268 ~~~~~adi~v~pS~~Eg~~~~--~lEAma------~G~Pvv~s~~~g-~~e~i-------~~-----~~~g~~~~~~d~~ 326 (374)
T TIGR03088 268 ALMQALDLFVLPSLAEGISNT--ILEAMA------SGLPVIATAVGG-NPELV-------QH-----GVTGALVPPGDAV 326 (374)
T ss_pred HHHHhcCEEEeccccccCchH--HHHHHH------cCCCEEEcCCCC-cHHHh-------cC-----CCceEEeCCCCHH
Confidence 4567899877432 344432 556663 689999977654 22222 11 1223445567899
Q ss_pred HHHHHHHhhcC
Q 027287 189 ELMNKMEEYFP 199 (225)
Q Consensus 189 e~~~~l~~~~~ 199 (225)
++.+.|.+...
T Consensus 327 ~la~~i~~l~~ 337 (374)
T TIGR03088 327 ALARALQPYVS 337 (374)
T ss_pred HHHHHHHHHHh
Confidence 88888887643
No 258
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=28.83 E-value=1.3e+02 Score=25.77 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=51.1
Q ss_pred CCEEEEecCCcccHHHHHHHHHHHHhC-------CCCCcEEEEeCCCCch--HHHHHHHHHHHcC-CCCccccCcEEEcC
Q 027287 116 SDAFIALPGGYGTLEELLEVITWAQLG-------IHDKPVGLLNVDGYYN--SLLTFIDKAVEEG-FISPNARHIIVSAP 185 (225)
Q Consensus 116 sDa~IvlpGG~GTL~Ei~~a~~~~qlg-------~~~kPiill~~~g~w~--~l~~~l~~~~~~g-fi~~~~~~~i~~~~ 185 (225)
.|+.|++|=...||..+..=++-.-+. +.++|++|+-.+-=+. +|.+ +-++.+.| .|-+.....++--.
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeN-Mlkl~~~GaiI~Pp~PaFY~~P~ 159 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLEN-MLKLAEMGAIIMPPMPAFYHKPQ 159 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHH-HHHHHHCCCEecCCChhhhcCCC
Confidence 578999999999999987554432221 3578998875543332 2222 22233444 45555666677778
Q ss_pred CHHHHHHHHHh
Q 027287 186 NAKELMNKMEE 196 (225)
Q Consensus 186 d~ee~~~~l~~ 196 (225)
+.||+++++-.
T Consensus 160 sieDlvd~~v~ 170 (191)
T COG0163 160 SIEDLVDFVVG 170 (191)
T ss_pred CHHHHHHHHHH
Confidence 99999888764
No 259
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=28.82 E-value=3.5e+02 Score=25.04 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=59.9
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE----EcCCCccHHHHHHHHHHhcCC-eEEEEeCCccccCCCCCC
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV----YGGGSVGLMGLISQAVYDGGR-HVIGVIPKTLMPREITGE 94 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv----~GGg~~GlM~a~a~gA~~aGG-~viGIiP~~~~~~e~~~~ 94 (225)
..+.|..|.|-...-.+.+.-..|-+.. ..+..|+ |+.|..---..+.+.+.+.-| .-+=++-+.
T Consensus 145 ~~~tIlvGNSgd~SN~Hie~L~~l~~~~-~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~--------- 214 (322)
T PRK02797 145 GKMTILVGNSGDRSNRHIEALRALHQQF-GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEK--------- 214 (322)
T ss_pred CceEEEEeCCCCCcccHHHHHHHHHHHh-CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhh---------
Confidence 3566644444333344555555555554 3456666 443432334444444544433 222222111
Q ss_pred CCceEeecCCHHHHHHHHHhhCCEEEEec---CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHH
Q 027287 95 TVGEVKPVADMHQRKAEMAKHSDAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLT 162 (225)
Q Consensus 95 ~~~~~~~~~~m~~Rk~~mv~~sDa~Ivlp---GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~ 162 (225)
-.|.+=.. ++..+|.-|..- =|+||+-=+ .| .++|+++-..+-+|.++.+
T Consensus 215 --------l~f~eYl~-lL~~~Dl~~f~~~RQQgiGnl~lL------i~---~G~~v~l~r~n~fwqdl~e 267 (322)
T PRK02797 215 --------LPFDDYLA-LLRQCDLGYFIFARQQGIGTLCLL------IQ---LGKPVVLSRDNPFWQDLTE 267 (322)
T ss_pred --------CCHHHHHH-HHHhCCEEEEeechhhHHhHHHHH------HH---CCCcEEEecCCchHHHHHh
Confidence 11222233 457888666654 389997532 24 4699999766678988654
No 260
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=28.79 E-value=5e+02 Score=24.44 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=54.8
Q ss_pred ceEEEEeCCCC---CC-ChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCC
Q 027287 20 NRICVFCGSSA---GK-KSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGET 95 (225)
Q Consensus 20 ~~V~Vfggs~~---~~-~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~ 95 (225)
++|+++.+++. .. .+...+.++++-+.|-+.++.+|..+ .. . . .+ +
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vv~~~-~~-~---------------------~-~~-----~- 50 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPVEVVDKP-EV-T---------------------G-TP-----D- 50 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCceEEecC-cc-c---------------------C-CH-----H-
Confidence 36888888776 22 23455666777777766778877654 21 0 0 00 0
Q ss_pred CceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027287 96 VGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 154 (225)
Q Consensus 96 ~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~ 154 (225)
+.. ..-+..-.+..|++|+.-.-+||-..+...+. ..++|+++++..
T Consensus 51 --~~~-----~~~~~~~~~~~d~ii~~~~tf~~~~~~~~~~~-----~~~~Pvll~a~~ 97 (452)
T cd00578 51 --EAR-----KAAEEFNEANCDGLIVWMHTFGPAKMWIAGLS-----ELRKPVLLLATQ 97 (452)
T ss_pred --HHH-----HHHHHHhhcCCcEEEEcccccccHHHHHHHHH-----hcCCCEEEEeCC
Confidence 000 00011122368899999888888877766542 257999998754
No 261
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.77 E-value=2.5e+02 Score=23.66 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=23.9
Q ss_pred HHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027287 111 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 153 (225)
Q Consensus 111 ~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~ 153 (225)
++-...|++|+.|.......++...+ ...+.|+++++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~-----~~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKA-----IARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHH-----HHCCCcEEEeCC
Confidence 44456899999886555555554332 124678888864
No 262
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=28.72 E-value=1.6e+02 Score=25.10 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=38.8
Q ss_pred HHHHHhhCCEEEEecC--CcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 027287 109 KAEMAKHSDAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPN 186 (225)
Q Consensus 109 k~~mv~~sDa~IvlpG--G~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 186 (225)
...+...||++|.-.. |.|. =++|+++ .++|++..+..+. .+++ .+.....++-.+|
T Consensus 260 ~~~~~~~~d~~l~~s~~e~~~~--~~lEa~a------~g~PvI~~~~~~~-~~~i------------~~~~~g~~~~~~~ 318 (364)
T cd03814 260 LAAAYASADVFVFPSRTETFGL--VVLEAMA------SGLPVVAPDAGGP-ADIV------------TDGENGLLVEPGD 318 (364)
T ss_pred HHHHHHhCCEEEECcccccCCc--HHHHHHH------cCCCEEEcCCCCc-hhhh------------cCCcceEEcCCCC
Confidence 3456688998775422 2222 2455553 6899998765432 2211 1122334455667
Q ss_pred HHHHHHHHHhhcC
Q 027287 187 AKELMNKMEEYFP 199 (225)
Q Consensus 187 ~ee~~~~l~~~~~ 199 (225)
.+++.+.|.+...
T Consensus 319 ~~~l~~~i~~l~~ 331 (364)
T cd03814 319 AEAFAAALAALLA 331 (364)
T ss_pred HHHHHHHHHHHHc
Confidence 7777777777543
No 263
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=28.62 E-value=72 Score=24.50 Aligned_cols=40 Identities=25% Similarity=0.181 Sum_probs=26.5
Q ss_pred ccCCcceEEEEe-CCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 027287 15 NQSKFNRICVFC-GSSAGKKSTYKDAAIELGKELVARNIDLVY 56 (225)
Q Consensus 15 ~~~~~~~V~Vfg-gs~~~~~~~~~~~A~~lG~~LA~~G~~lv~ 56 (225)
..-+.++.+||| |++.. .. |...++.+-+.|.+.|..++.
T Consensus 83 ~~l~~~~~avfg~Gd~~~-~~-f~~~~k~l~~~l~~~G~~~~~ 123 (143)
T PF00258_consen 83 PDLKGKKYAVFGLGDSGY-GG-FCAAAKKLDERLEELGAKRVG 123 (143)
T ss_dssp SHCTTCEEEEEEEEETTS-ST-TTHHHHHHHHHHHHTTEEEES
T ss_pred cccccceeeeeecCCccc-hh-hhhHHHHHHHHHHHCCCEEEE
Confidence 344555677763 22222 22 888899999999999888874
No 264
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=28.46 E-value=97 Score=28.89 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=23.7
Q ss_pred CcceEEE-EeCCCCCC-----C-hHHHHHHHHHHHHHHhCCC--eEEEcCC
Q 027287 18 KFNRICV-FCGSSAGK-----K-STYKDAAIELGKELVARNI--DLVYGGG 59 (225)
Q Consensus 18 ~~~~V~V-fggs~~~~-----~-~~~~~~A~~lG~~LA~~G~--~lv~GGg 59 (225)
++++|.| ||||.... + +...+.|+++.++. ++|+ .||+||+
T Consensus 4 ~~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~-~~G~~vvlVsSGa 53 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLK-DQGHQVVLVSSGA 53 (368)
T ss_pred CCcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHH-HCCCEEEEEeCCh
Confidence 3456666 87777643 2 33444555555443 5564 6678876
No 265
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=28.41 E-value=4.8e+02 Score=24.14 Aligned_cols=102 Identities=13% Similarity=0.194 Sum_probs=63.5
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE-EEcCCCccHHHHHHHHHHhcCCeEEEEeC-CccccCCCCCCC
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDL-VYGGGSVGLMGLISQAVYDGGRHVIGVIP-KTLMPREITGET 95 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~l-v~GGg~~GlM~a~a~gA~~aGG~viGIiP-~~~~~~e~~~~~ 95 (225)
..-++=|++-.+....+. ...-+-++.|.+.|+.+ +|-.- -+. .++...+.|- +.|.| .....- .-.
T Consensus 166 ~~iKlEvi~e~~~llpd~--~~~v~aa~~L~~~Gf~v~~yc~~--d~~--~a~~l~~~g~--~avmPl~~pIGs---g~g 234 (326)
T PRK11840 166 DLVKLEVLGDAKTLYPDM--VETLKATEILVKEGFQVMVYCSD--DPI--AAKRLEDAGA--VAVMPLGAPIGS---GLG 234 (326)
T ss_pred CeEEEEEcCCCCCcccCH--HHHHHHHHHHHHCCCEEEEEeCC--CHH--HHHHHHhcCC--EEEeeccccccC---CCC
Confidence 344567776655543322 24567788889999999 67653 333 3344444544 67777 433221 111
Q ss_pred CceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHH
Q 027287 96 VGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVIT 137 (225)
Q Consensus 96 ~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~ 137 (225)
+. =.+.-+.+++..+.-|++.+|+||-+.+..++.
T Consensus 235 v~-------~p~~i~~~~e~~~vpVivdAGIg~~sda~~Ame 269 (326)
T PRK11840 235 IQ-------NPYTIRLIVEGATVPVLVDAGVGTASDAAVAME 269 (326)
T ss_pred CC-------CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH
Confidence 11 134455666778999999999999999999984
No 266
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=28.40 E-value=68 Score=30.53 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCeEEEcCC----------CccHHHHHHHHHHhc
Q 027287 39 AAIELGKELVARNIDLVYGGG----------SVGLMGLISQAVYDG 74 (225)
Q Consensus 39 ~A~~lG~~LA~~G~~lv~GGg----------~~GlM~a~a~gA~~a 74 (225)
-|+.|+..|-++||.||+||- +.|+.++.++-.++.
T Consensus 329 Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 329 NAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 456677777789999999984 358888888877774
No 267
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.38 E-value=2.2e+02 Score=25.01 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=31.5
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe----------------EEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNID----------------LVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~----------------lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
++++|+ .++. -.+.+.++.++|.+.|+. +++=||. |-|-.+++.+ +-.++||
T Consensus 1 m~~~~~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGD-GT~L~a~~~~---~~Pilgi 68 (256)
T PRK14075 1 MKLGIF--YREE----KEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGD-GTVLKAAKKV---GTPLVGF 68 (256)
T ss_pred CEEEEE--eCcc----HHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCc-HHHHHHHHHc---CCCEEEE
Confidence 356777 2222 335677888888776642 3444454 7776655544 7778887
No 268
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=28.36 E-value=1.5e+02 Score=24.75 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE-eCCc-cc---cCCCCCCCCce-E---eecCCHHHHHHHHH
Q 027287 43 LGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV-IPKT-LM---PREITGETVGE-V---KPVADMHQRKAEMA 113 (225)
Q Consensus 43 lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI-iP~~-~~---~~e~~~~~~~~-~---~~~~~m~~Rk~~mv 113 (225)
|-+.+...+..|-|||| =+|-.-++.++...|.||=+ .|-+ +. ..+...+.+.+ - .+..-|.+|+.+.-
T Consensus 65 l~~l~~~~~~ViaTGGG--~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~ 142 (172)
T COG0703 65 LKELLEEDNAVIATGGG--AVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYR 142 (172)
T ss_pred HHHHhhcCCeEEECCCc--cccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHH
Confidence 34444444577778887 58888889999988877766 2211 11 11111111111 1 12344578888777
Q ss_pred hhCCEEEEecCCc
Q 027287 114 KHSDAFIALPGGY 126 (225)
Q Consensus 114 ~~sDa~IvlpGG~ 126 (225)
+.||-++--....
T Consensus 143 e~a~~~~~~~~~~ 155 (172)
T COG0703 143 EVADFIIDTDDRS 155 (172)
T ss_pred HhCcEEecCCCCc
Confidence 7766665554444
No 269
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=28.25 E-value=1.2e+02 Score=27.63 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEE------EcCCHHHHHHHHHhh
Q 027287 124 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIV------SAPNAKELMNKMEEY 197 (225)
Q Consensus 124 GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~------~~~d~ee~~~~l~~~ 197 (225)
.+.||++|+++..+ .+ ++.+ +-||++++.|.+ +. +.+.|. .-.||...+++|.+|
T Consensus 152 ~~~~~~e~~fe~F~------~G--~~~~--Gp~~dHVl~~W~-~~--------~~~~VLFl~YEdmk~dp~~~ikrlaeF 212 (297)
T KOG1584|consen 152 PGPGTFEEFFESFC------NG--VVPY--GPWWDHVLGYWE-LE--------DPKNVLFLKYEDMKADPKGEIKKLAEF 212 (297)
T ss_pred CCCCcHHHHHHHHh------CC--cCCc--CChHHHHHHHHH-hc--------CCCceEEEEHHHhhhCHHHHHHHHHHH
Confidence 56788999999985 12 2333 359999999987 21 122222 235777888888887
Q ss_pred cC
Q 027287 198 FP 199 (225)
Q Consensus 198 ~~ 199 (225)
.-
T Consensus 213 Lg 214 (297)
T KOG1584|consen 213 LG 214 (297)
T ss_pred hC
Confidence 63
No 270
>PRK09004 FMN-binding protein MioC; Provisional
Probab=28.18 E-value=1.6e+02 Score=23.43 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=4.7
Q ss_pred HhcCCeEEE
Q 027287 72 YDGGRHVIG 80 (225)
Q Consensus 72 ~~aGG~viG 80 (225)
.+.|+..++
T Consensus 110 ~~lGa~~v~ 118 (146)
T PRK09004 110 KAKGAKQIG 118 (146)
T ss_pred HHcCCeEee
Confidence 345665554
No 271
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=28.17 E-value=2.3e+02 Score=27.14 Aligned_cols=69 Identities=22% Similarity=0.166 Sum_probs=45.9
Q ss_pred HHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCcc
Q 027287 107 QRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPN 176 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~ 176 (225)
-|+-+=...++++++-|=-+|||.|.+++..+.+-.- =+||+--....=-|..+.-|.-....|+|...
T Consensus 319 l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~g-y~~viSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 319 LKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAG-YTAVISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred HHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCC-CeEEEecCCCCcccchHHHHHHHhCCCeeecC
Confidence 4455555678999999999999999999998777321 15666554433345555555545566666533
No 272
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=27.99 E-value=1.1e+02 Score=26.39 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=22.3
Q ss_pred hhCCEEE--Ee-cCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027287 114 KHSDAFI--AL-PGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 154 (225)
Q Consensus 114 ~~sDa~I--vl-pGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~ 154 (225)
..+|.+| +| -|-.|.+.|-+..+ ..++..+.+||+-++.-
T Consensus 118 ~~~dvIVDalfG~G~~g~lrep~a~~-Ie~iN~~~~pivAVDiP 160 (203)
T COG0062 118 ESADVIVDALFGTGLSGPLREPFASL-IEAINASGKPIVAVDIP 160 (203)
T ss_pred ccCCEEEEeceecCCCCCCccHHHHH-HHHHHhcCCceEEEeCC
Confidence 4456554 12 35567666654322 12344578999988853
No 273
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=27.92 E-value=3e+02 Score=25.24 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=11.0
Q ss_pred hhCCEEEEecCCc
Q 027287 114 KHSDAFIALPGGY 126 (225)
Q Consensus 114 ~~sDa~IvlpGG~ 126 (225)
..+|++|+++||.
T Consensus 82 ~~~D~IiavGGGS 94 (380)
T cd08185 82 EGCDFVVGLGGGS 94 (380)
T ss_pred cCCCEEEEeCCcc
Confidence 4689999999985
No 274
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=27.74 E-value=1.6e+02 Score=23.30 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
+.|+|+|.+..|. . ..++.|.+.|.++|+.+.
T Consensus 1 pvv~VvG~~~sGK-T---Tl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGK-T---TLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSH-H---HHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCH-H---HHHHHHHHHHhHcCCceE
Confidence 4688888776652 2 356889999998998766
No 275
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=27.62 E-value=4.5e+02 Score=23.50 Aligned_cols=115 Identities=14% Similarity=0.191 Sum_probs=71.9
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCC
Q 027287 17 SKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETV 96 (225)
Q Consensus 17 ~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~ 96 (225)
...-++=|++.++.--.+.+ + ..+-++.|.+.||.+.-=- .=.-.+++.-.++|-. .|+|-.- |. ..+ .
T Consensus 98 t~wiKlEVi~d~~tLlPD~~-e-tl~Aae~Lv~eGF~VlPY~---~dD~v~arrLee~Gca--avMPl~a-PI--GSg-~ 166 (262)
T COG2022 98 TNWIKLEVIGDEKTLLPDPI-E-TLKAAEQLVKEGFVVLPYT---TDDPVLARRLEEAGCA--AVMPLGA-PI--GSG-L 166 (262)
T ss_pred CCeEEEEEecCCcccCCChH-H-HHHHHHHHHhCCCEEeecc---CCCHHHHHHHHhcCce--Eeccccc-cc--cCC-c
Confidence 34456778877776432333 2 3567889999999988222 2244567777777765 4566321 11 111 0
Q ss_pred ceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027287 97 GEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 153 (225)
Q Consensus 97 ~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~ 153 (225)
. +.. ..=.+++++.+|+=|++=-|+||.+...+++.| | ---||+|+
T Consensus 167 G--~~n---~~~l~iiie~a~VPviVDAGiG~pSdAa~aMEl---G---~DaVL~NT 212 (262)
T COG2022 167 G--LQN---PYNLEIIIEEADVPVIVDAGIGTPSDAAQAMEL---G---ADAVLLNT 212 (262)
T ss_pred C--cCC---HHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhc---c---cceeehhh
Confidence 0 000 233567889999999999999999999999853 3 34456665
No 276
>PRK07890 short chain dehydrogenase; Provisional
Probab=27.56 E-value=3e+02 Score=22.82 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
+.++|.|.|+++. ..+.+++.|+++|+.|+..+....-.+.........+.++..+
T Consensus 4 ~~k~vlItGa~~~--------IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK07890 4 KGKVVVVSGVGPG--------LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAV 59 (258)
T ss_pred CCCEEEEECCCCc--------HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE
No 277
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=27.52 E-value=3.6e+02 Score=23.64 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=41.9
Q ss_pred CcceEEEEeCCCCCC---ChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHH--HHHHHhcCCeEEEEeCCcc
Q 027287 18 KFNRICVFCGSSAGK---KSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLI--SQAVYDGGRHVIGVIPKTL 86 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~---~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~--a~gA~~aGG~viGIiP~~~ 86 (225)
...-|.|.|+++... .++..+..+.+.+. +.....|+.|-|....-+++ ++.|.++|...+-++|..+
T Consensus 35 Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~-~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 35 GTDGLVVVGTTGESPTLTHEEHEELIRAVVEA-VNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred CCCEEEECCcCCccccCCHHHHHHHHHHHHHH-hCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 344566666555432 45555554444444 34457788787754666655 5677888988888877654
No 278
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=27.51 E-value=3e+02 Score=24.66 Aligned_cols=73 Identities=12% Similarity=0.267 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCCEEEEe--cCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEE
Q 027287 106 HQRKAEMAKHSDAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVS 183 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~Ivl--pGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 183 (225)
.+....++..||++|.- ..|+|.- +.|++. .++||+..+..| ...++ .++ ....++-
T Consensus 293 ~~~~~~~l~~ad~~v~ps~~E~~g~~--~lEAma------~G~Pvi~~~~~~-~~e~i-------~~~-----~~g~~~~ 351 (405)
T TIGR03449 293 PEELVHVYRAADVVAVPSYNESFGLV--AMEAQA------CGTPVVAARVGG-LPVAV-------ADG-----ETGLLVD 351 (405)
T ss_pred HHHHHHHHHhCCEEEECCCCCCcChH--HHHHHH------cCCCEEEecCCC-cHhhh-------ccC-----CceEECC
Confidence 34556678899998764 2455542 455553 579999887643 22221 111 1112222
Q ss_pred cCCHHHHHHHHHhhcC
Q 027287 184 APNAKELMNKMEEYFP 199 (225)
Q Consensus 184 ~~d~ee~~~~l~~~~~ 199 (225)
.+|++++.+.|.+...
T Consensus 352 ~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 352 GHDPADWADALARLLD 367 (405)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3588888887777643
No 279
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.28 E-value=1.7e+02 Score=25.78 Aligned_cols=42 Identities=29% Similarity=0.505 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHH-----HHHHHHHHcCC
Q 027287 128 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL-----TFIDKAVEEGF 172 (225)
Q Consensus 128 TL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~-----~~l~~~~~~gf 172 (225)
|++++++.+.-..-...+.|++++ +||+++. +|++.+.+.|.
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~vlm---~Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIVLM---TYYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEE---ecccHHhhcCHHHHHHHHHHcCC
Confidence 455666555322212356899887 4777554 46666666553
No 280
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=27.15 E-value=2.9e+02 Score=23.36 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=22.3
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCC
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGG 59 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg 59 (225)
.+++.|.|+++. ....+++.|+++|+.|+..+.
T Consensus 10 ~k~vlVtGas~g--------iG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 10 GKVAVITGGGGV--------LGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred CCEEEEeCCCch--------HHHHHHHHHHHCCCEEEEEeC
Confidence 457777766542 245677788889998876553
No 281
>PLN02591 tryptophan synthase
Probab=27.15 E-value=1.6e+02 Score=25.98 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHH-----HHHHHHHHcC
Q 027287 128 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL-----TFIDKAVEEG 171 (225)
Q Consensus 128 TL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~-----~~l~~~~~~g 171 (225)
|++.+++.+.-.. ...+.|++++ +||+++. +|++.+.+.|
T Consensus 62 ~~~~~~~~~~~~r-~~~~~p~ilm---~Y~N~i~~~G~~~F~~~~~~aG 106 (250)
T PLN02591 62 TLDSVISMLKEVA-PQLSCPIVLF---TYYNPILKRGIDKFMATIKEAG 106 (250)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhHHHHHHHHHHHcC
Confidence 5666766664222 2356899887 4777554 4666666655
No 282
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=27.00 E-value=1.7e+02 Score=25.06 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=22.8
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHhCC--CeEEEcCCCccHHHH
Q 027287 25 FCGSSAGKKSTYKDAAIELGKELVARN--IDLVYGGGSVGLMGL 66 (225)
Q Consensus 25 fggs~~~~~~~~~~~A~~lG~~LA~~G--~~lv~GGg~~GlM~a 66 (225)
||||...+.+...+.++++.++. +.| ..||.||+. +....
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~vvV~sg~g-~~~~~ 47 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKRK-KKGNQVVVVVSAMG-GTTDE 47 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCCC-chhHH
Confidence 88887754445555566666543 444 457777743 44333
No 283
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=26.77 E-value=2.4e+02 Score=23.84 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHh-CCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 027287 107 QRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP 185 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~ql-g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 185 (225)
++....++.+|.+|+++ -.++.. -++.+... ...+.|++++|.+.-. ++ ...-+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v~---p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~--~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVVY---PAAGLPEEAKERGARVIEINPEPTP---------------LS--PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccch---hHHHHHHHHHHCCCeEEEECCCCCC---------------CC--CcCCEEEEC
Confidence 34445567899999975 333333 22222221 2357899999975221 11 223456777
Q ss_pred CHHHHHHHH
Q 027287 186 NAKELMNKM 194 (225)
Q Consensus 186 d~ee~~~~l 194 (225)
+.+|++..|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 899888765
No 284
>PRK14557 pyrH uridylate kinase; Provisional
Probab=26.72 E-value=1e+02 Score=27.00 Aligned_cols=43 Identities=19% Similarity=0.478 Sum_probs=23.4
Q ss_pred CcceEEE-EeCCCCCCCh---HHHHHHHHHHHHHH---hCCC--eEEEcCCC
Q 027287 18 KFNRICV-FCGSSAGKKS---TYKDAAIELGKELV---ARNI--DLVYGGGS 60 (225)
Q Consensus 18 ~~~~V~V-fggs~~~~~~---~~~~~A~~lG~~LA---~~G~--~lv~GGg~ 60 (225)
+.++|.+ |||+....+. .-.+..+++++.|+ +.|+ .||.|||.
T Consensus 3 ~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn 54 (247)
T PRK14557 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGN 54 (247)
T ss_pred cccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcH
Confidence 3455666 8888875421 00124455555555 4554 56788863
No 285
>PRK07454 short chain dehydrogenase; Provisional
Probab=26.66 E-value=3.4e+02 Score=22.32 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred ccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 15 NQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 15 ~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
...+++++.|.|+++. ....+++.|+++|+.|+.-+-+..-...+.+...+.++.+.-+
T Consensus 2 ~~~~~k~vlItG~sg~--------iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (241)
T PRK07454 2 SLNSMPRALITGASSG--------IGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAY 60 (241)
T ss_pred CCCCCCEEEEeCCCch--------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEE
No 286
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=26.64 E-value=2.5e+02 Score=24.39 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHHHHhhCCEEEEecCCc-------ccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcE
Q 027287 109 KAEMAKHSDAFIALPGGY-------GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHII 181 (225)
Q Consensus 109 k~~mv~~sDa~IvlpGG~-------GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i 181 (225)
...++..||++|. |.-. |.-.=++|+++ .++||+.-+..+. .++ +.......+
T Consensus 258 l~~~~~~ad~~v~-ps~~~~~~~~E~~~~~~~EA~a------~G~PvI~s~~~~~-~e~------------i~~~~~g~~ 317 (367)
T cd05844 258 VRELMRRARIFLQ-PSVTAPSGDAEGLPVVLLEAQA------SGVPVVATRHGGI-PEA------------VEDGETGLL 317 (367)
T ss_pred HHHHHHhCCEEEE-CcccCCCCCccCCchHHHHHHH------cCCCEEEeCCCCc-hhh------------eecCCeeEE
Confidence 3446788998765 3211 11222455553 6899998776542 111 111222334
Q ss_pred EEcCCHHHHHHHHHhhcCC
Q 027287 182 VSAPNAKELMNKMEEYFPQ 200 (225)
Q Consensus 182 ~~~~d~ee~~~~l~~~~~~ 200 (225)
+-.+|++++.+.|.+....
T Consensus 318 ~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 318 VPEGDVAALAAALGRLLAD 336 (367)
T ss_pred ECCCCHHHHHHHHHHHHcC
Confidence 4456899998888876543
No 287
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=26.54 E-value=1.2e+02 Score=25.40 Aligned_cols=33 Identities=6% Similarity=-0.008 Sum_probs=17.7
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 027287 22 ICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVY 56 (225)
Q Consensus 22 V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~ 56 (225)
|+|+..+- .++-+.+....+-+.+.+.|+.++.
T Consensus 2 igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~ 34 (275)
T cd06320 2 YGVVLKTL--SNEFWRSLKEGYENEAKKLGVSVDI 34 (275)
T ss_pred eeEEEecC--CCHHHHHHHHHHHHHHHHhCCeEEE
Confidence 56665332 2455555555566666666666543
No 288
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=26.53 E-value=3.2e+02 Score=27.91 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHHH---------------hCCCeEE-EcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 32 KKSTYKDAAIELGKELV---------------ARNIDLV-YGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 32 ~~~~~~~~A~~lG~~LA---------------~~G~~lv-~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
.-+.||+.|.++|..-- +.++.++ .++.|+|+|..++... -.|+.+|||
T Consensus 11 r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~-pv~slivGv 75 (780)
T KOG1098|consen 11 RLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSM-PVGSLIVGV 75 (780)
T ss_pred cchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhC-CCCceEEEe
Confidence 34679999999886421 1344444 7788989998887744 489999998
No 289
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=26.47 E-value=2.7e+02 Score=25.57 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=10.5
Q ss_pred hCCEEEEecCCc
Q 027287 115 HSDAFIALPGGY 126 (225)
Q Consensus 115 ~sDa~IvlpGG~ 126 (225)
.+|++|+++||.
T Consensus 81 ~~D~IIaiGGGS 92 (347)
T cd08184 81 LPCAIVGIGGGS 92 (347)
T ss_pred CCCEEEEeCCcH
Confidence 589999999984
No 290
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=26.26 E-value=5.2e+02 Score=23.79 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=39.5
Q ss_pred CCEEEE-ecCCcccHHHHHHHHHHHHhC-CCCCcEEEEeCCC-CchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHH
Q 027287 116 SDAFIA-LPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDG-YYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMN 192 (225)
Q Consensus 116 sDa~Iv-lpGG~GTL~Ei~~a~~~~qlg-~~~kPiill~~~g-~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~ 192 (225)
.|++++ ++||+.-.+++.+.+.-..-. ..+||+++-- .| -.+...+. +.+.|+ .+.+.++++++++
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~-~g~~~~~~~~~---L~~~G~-------~ip~~~~~~~Av~ 379 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRL-EGTNVEEGKKI---LAESGL-------NIIFATSMEEAAE 379 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEe-CCccHHHHHHH---HHHcCC-------CccccCCHHHHHH
Confidence 466554 578887778887766533211 1348995533 33 22222222 333342 2557899999988
Q ss_pred HHHh
Q 027287 193 KMEE 196 (225)
Q Consensus 193 ~l~~ 196 (225)
.+-+
T Consensus 380 ~~~~ 383 (386)
T TIGR01016 380 KAVE 383 (386)
T ss_pred HHHH
Confidence 7754
No 291
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=26.26 E-value=4.8e+02 Score=24.18 Aligned_cols=81 Identities=22% Similarity=0.397 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHh--CCCe--EE---EcCCC-ccHHHHHHHHHHhcCCeEEEE--eCCccccCCCCCCCCceEeecC
Q 027287 34 STYKDAAIELGKELVA--RNID--LV---YGGGS-VGLMGLISQAVYDGGRHVIGV--IPKTLMPREITGETVGEVKPVA 103 (225)
Q Consensus 34 ~~~~~~A~~lG~~LA~--~G~~--lv---~GGg~-~GlM~a~a~gA~~aGG~viGI--iP~~~~~~e~~~~~~~~~~~~~ 103 (225)
...++.|++--..+.+ .|.. .+ .|||+ +|.--.+++.|.+.|-.|++| .|-.+. .+.. ..
T Consensus 76 ~vG~~aAee~~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~E-----G~~r-----~~ 145 (338)
T COG0206 76 EVGRAAAEESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFE-----GSPR-----ME 145 (338)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchhc-----CchH-----HH
Confidence 3555555555555554 3444 33 24443 466777899999999999998 343221 1100 01
Q ss_pred CHHHHHHHHHhhCCEEEEecC
Q 027287 104 DMHQRKAEMAKHSDAFIALPG 124 (225)
Q Consensus 104 ~m~~Rk~~mv~~sDa~IvlpG 124 (225)
.-......|.+.+|-+|++|-
T Consensus 146 ~A~~gi~~L~~~~DtlIvi~N 166 (338)
T COG0206 146 NAEEGIEELREVVDTLIVIPN 166 (338)
T ss_pred HHHHHHHHHHHhCCcEEEEec
Confidence 114667788899999999985
No 292
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=26.16 E-value=1.6e+02 Score=22.76 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeE
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARNIDL 54 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~l 54 (225)
+|.|+.||...+ ..-...|+.+.+.+.+.|+.+
T Consensus 2 kilii~gS~r~~-~~t~~l~~~~~~~l~~~g~e~ 34 (152)
T PF03358_consen 2 KILIINGSPRKN-SNTRKLAEAVAEQLEEAGAEV 34 (152)
T ss_dssp EEEEEESSSSTT-SHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEEEECcCCCC-CHHHHHHHHHHHHHHHcCCEE
Confidence 455555555432 333457777888777766554
No 293
>PRK05866 short chain dehydrogenase; Provisional
Probab=26.04 E-value=2.7e+02 Score=24.27 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=28.4
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
++|-|.|+++. ..+.+++.|+++|+.|+..+-...-.+.+.+...+.++.+..+
T Consensus 41 k~vlItGasgg--------IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~ 94 (293)
T PRK05866 41 KRILLTGASSG--------IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAV 94 (293)
T ss_pred CEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 45666665442 2456777778888888766544222233333222334544433
No 294
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.98 E-value=3.4e+02 Score=26.75 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=41.7
Q ss_pred hcccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe------------------------------EEEcCCCcc
Q 027287 13 MNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNID------------------------------LVYGGGSVG 62 (225)
Q Consensus 13 ~~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~------------------------------lv~GGg~~G 62 (225)
+.-..+.++|+|+. +.. ++...+.+.++.++|.++|+. +|+=||. |
T Consensus 284 ~~w~~~~~~i~iv~--~~~-~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD-G 359 (569)
T PRK14076 284 NKWRIKPTKFGIVS--RID-NEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGD-G 359 (569)
T ss_pred hhcccCCcEEEEEc--CCC-CHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCc-H
Confidence 45567778899993 332 455667888888888665542 2233444 7
Q ss_pred HHHHHHHHHHhcCCeEEEE
Q 027287 63 LMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 63 lM~a~a~gA~~aGG~viGI 81 (225)
-|--+++-....+-.++||
T Consensus 360 T~L~aa~~~~~~~~PilGi 378 (569)
T PRK14076 360 TVLRASKLVNGEEIPIICI 378 (569)
T ss_pred HHHHHHHHhcCCCCCEEEE
Confidence 7766666555566678887
No 295
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=25.97 E-value=2.9e+02 Score=23.79 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=40.6
Q ss_pred HHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHH
Q 027287 109 KAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAK 188 (225)
Q Consensus 109 k~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~e 188 (225)
..-++..||++|.-.---|.-.=+.|+++ .++|||.-+..|. ... +.+ ....+...++++
T Consensus 260 ~~~~~~~adi~v~ps~~E~~~~~~lEAma------~G~PvI~s~~~~~-~~~---i~~----------~~~~~~~~~~~~ 319 (358)
T cd03812 260 VPELLQAMDVFLFPSLYEGLPLVLIEAQA------SGLPCILSDTITK-EVD---LTD----------LVKFLSLDESPE 319 (358)
T ss_pred HHHHHHhcCEEEecccccCCCHHHHHHHH------hCCCEEEEcCCch-hhh---hcc----------CccEEeCCCCHH
Confidence 33467889988754321122223556663 6899999876542 221 111 122344455678
Q ss_pred HHHHHHHhhcCC
Q 027287 189 ELMNKMEEYFPQ 200 (225)
Q Consensus 189 e~~~~l~~~~~~ 200 (225)
++.+.|.+....
T Consensus 320 ~~a~~i~~l~~~ 331 (358)
T cd03812 320 IWAEEILKLKSE 331 (358)
T ss_pred HHHHHHHHHHhC
Confidence 888888886543
No 296
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=25.96 E-value=1.2e+02 Score=25.92 Aligned_cols=34 Identities=29% Similarity=0.524 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE-EcCCC
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV-YGGGS 60 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv-~GGg~ 60 (225)
.++||.|+|.... + -+.=+.|.++|+.|. ||-|.
T Consensus 2 l~~avVCasN~NR-S------MEAH~~L~~~G~~V~SfGTGs 36 (195)
T PF04722_consen 2 LRFAVVCASNQNR-S------MEAHNVLKKAGFNVRSFGTGS 36 (195)
T ss_dssp SEEEEEESSSSSH-H------HHHHHHHHHTT-EEEEEE-SS
T ss_pred ceEEEEccCCCCc-C------HHHHHHHHHCCCceEeecCCC
Confidence 4799999877632 2 233456788999988 55543
No 297
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=25.94 E-value=3.4e+02 Score=24.97 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=38.0
Q ss_pred HHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHH
Q 027287 112 MAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELM 191 (225)
Q Consensus 112 mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~ 191 (225)
++..||.+| ||.||+. .|+. ..+.|.|=..+ |.+-.+..+ +.+.| .++.+.|++|++
T Consensus 245 Ll~~a~l~I---g~ggTMa--~EAA------~LGtPaIs~~~-g~~~~vd~~---L~~~G--------ll~~~~~~~ei~ 301 (335)
T PF04007_consen 245 LLYYADLVI---GGGGTMA--REAA------LLGTPAISCFP-GKLLAVDKY---LIEKG--------LLYHSTDPDEIV 301 (335)
T ss_pred HHHhcCEEE---eCCcHHH--HHHH------HhCCCEEEecC-CcchhHHHH---HHHCC--------CeEecCCHHHHH
Confidence 455566655 5556665 2222 13688886533 233333333 44545 468899999999
Q ss_pred HHHHhhc
Q 027287 192 NKMEEYF 198 (225)
Q Consensus 192 ~~l~~~~ 198 (225)
+.+.+..
T Consensus 302 ~~v~~~~ 308 (335)
T PF04007_consen 302 EYVRKNL 308 (335)
T ss_pred HHHHHhh
Confidence 9887643
No 298
>PLN02494 adenosylhomocysteinase
Probab=25.93 E-value=2.7e+02 Score=27.10 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=39.6
Q ss_pred CeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccH-H
Q 027287 52 IDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTL-E 130 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL-~ 130 (225)
-.+|.|.|+.| ..+++-+...|.+|+.+-.+.....+.....+. . .++. . .+..+|.||...|..+.+ .
T Consensus 256 tVvViGyG~IG--r~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-v---v~le---E-al~~ADVVI~tTGt~~vI~~ 325 (477)
T PLN02494 256 VAVICGYGDVG--KGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-V---LTLE---D-VVSEADIFVTTTGNKDIIMV 325 (477)
T ss_pred EEEEECCCHHH--HHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-e---ccHH---H-HHhhCCEEEECCCCccchHH
Confidence 45567877655 456666777788888773221110010011111 1 1232 2 457899999988887765 4
Q ss_pred HHHH
Q 027287 131 ELLE 134 (225)
Q Consensus 131 Ei~~ 134 (225)
+.+.
T Consensus 326 e~L~ 329 (477)
T PLN02494 326 DHMR 329 (477)
T ss_pred HHHh
Confidence 4443
No 299
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=25.90 E-value=1.6e+02 Score=25.49 Aligned_cols=46 Identities=20% Similarity=0.450 Sum_probs=26.3
Q ss_pred HHHHHHHhhCCEEEEe-cC---C-cccHHHHHHHHHHHHh------CCCCCcEEEEeCCC
Q 027287 107 QRKAEMAKHSDAFIAL-PG---G-YGTLEELLEVITWAQL------GIHDKPVGLLNVDG 155 (225)
Q Consensus 107 ~Rk~~mv~~sDa~Ivl-pG---G-~GTL~Ei~~a~~~~ql------g~~~kPiill~~~g 155 (225)
.+-...++.+|+||+. |. + .|+|=-. +.|..- ...+||+.++...|
T Consensus 82 ~~l~~~v~~ADgvii~TPEYn~sipg~LKNa---iDwls~~~~~~~~~~~KpvaivgaSg 138 (219)
T TIGR02690 82 RELRQLSEWSEGQVWCSPERHGAITGSQKDQ---IDWIPLSVGPVRPTQGKTLAVMQVSG 138 (219)
T ss_pred HHHHHHHHhCCEEEEeCCccccCcCHHHHHH---HHhcccCcccccccCCCcEEEEEeCC
Confidence 3445567888987776 32 2 2444433 334332 13579998887543
No 300
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=25.76 E-value=1.4e+02 Score=25.47 Aligned_cols=41 Identities=15% Similarity=-0.017 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHh----CCCeEE---EcCCC---ccHHHHHHHHHHhcCCe
Q 027287 37 KDAAIELGKELVA----RNIDLV---YGGGS---VGLMGLISQAVYDGGRH 77 (225)
Q Consensus 37 ~~~A~~lG~~LA~----~G~~lv---~GGg~---~GlM~a~a~gA~~aGG~ 77 (225)
...|+.+|.+||+ .|+.=| -||-. +|-.-|+++||.++|-.
T Consensus 79 ~~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~GL~ 129 (193)
T PRK08569 79 TPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAGLE 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcCCc
Confidence 3578888888886 454332 34433 28899999999998754
No 301
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=25.60 E-value=4.1e+02 Score=22.35 Aligned_cols=109 Identities=19% Similarity=0.290 Sum_probs=56.3
Q ss_pred eEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEE-eCCCCc-hHHHHHHHHHHH---cCC
Q 027287 98 EVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL-NVDGYY-NSLLTFIDKAVE---EGF 172 (225)
Q Consensus 98 ~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill-~~~g~w-~~l~~~l~~~~~---~gf 172 (225)
+++++.+=..-.++ -+.-|+-++.-+|++--.|..+.+-..+ ..+.||+| +++ |- +.+..++...+. .-|
T Consensus 4 evIVVEGK~D~~~l-k~~~d~~~I~T~Gs~i~~~~i~~i~~~~---~~rgVIIfTDpD-~~GekIRk~i~~~vp~~khaf 78 (174)
T TIGR00334 4 EIIVVEGKDDQARI-KQAFDVDVIETNGSALKDETINLIKKAQ---KKQGVIILTDPD-FPGEKIRKKIEQHLPGYENCF 78 (174)
T ss_pred eEEEEecchHHHHH-HHhcCceEEEECCCccCHHHHHHHHHHh---hcCCEEEEeCCC-CchHHHHHHHHHHCCCCeEEe
Confidence 55666554433332 3444787888888873333333321111 46788776 444 43 344555544332 124
Q ss_pred CCcccc----CcE-EEcCCHHHHHHHHHhhcCCccccccccccc
Q 027287 173 ISPNAR----HII-VSAPNAKELMNKMEEYFPQHERVASKLSWE 211 (225)
Q Consensus 173 i~~~~~----~~i-~~~~d~ee~~~~l~~~~~~~~~~~~~~~w~ 211 (225)
++.... ..+ +=--+++++.+.|.+...........++|.
T Consensus 79 i~~~~a~~~~~~iGVE~As~e~I~~AL~~~~~~~~~~~~~it~~ 122 (174)
T TIGR00334 79 IPKHLAKPNKKKIGVEEASVEAIIAALENVHEETKAQQSDISWE 122 (174)
T ss_pred eeHHhcCcCCCCcccCCCCHHHHHHHHHHhcccccCcccccCHH
Confidence 543321 112 223368999999988775433333346775
No 302
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=25.59 E-value=2.5e+02 Score=25.96 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=11.1
Q ss_pred hhCCEEEEecCCc
Q 027287 114 KHSDAFIALPGGY 126 (225)
Q Consensus 114 ~~sDa~IvlpGG~ 126 (225)
..+|++|+++||.
T Consensus 87 ~~~D~IiaiGGGS 99 (383)
T PRK09860 87 NNCDSVISLGGGS 99 (383)
T ss_pred cCCCEEEEeCCch
Confidence 4689999999985
No 303
>PRK06696 uridine kinase; Validated
Probab=25.47 E-value=2.1e+02 Score=24.07 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=30.7
Q ss_pred hhhcccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 027287 11 MEMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGG 58 (225)
Q Consensus 11 ~~~~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 58 (225)
+......+...|+|-|+|+.|. . ..|.+|.+.|.+.|..++.-+
T Consensus 14 ~~~~~~~~~~iI~I~G~sgsGK-S---TlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 14 ILTLNLTRPLRVAIDGITASGK-T---TFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred HHHhCCCCceEEEEECCCCCCH-H---HHHHHHHHHHHHcCCeEEEec
Confidence 3334456677899998888773 2 357888888887787777543
No 304
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=25.38 E-value=96 Score=26.37 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=22.6
Q ss_pred CCEEEEecCC----cccHHHHHHHHHHHHhCCCCCcEEEEeCCCCch
Q 027287 116 SDAFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN 158 (225)
Q Consensus 116 sDa~IvlpGG----~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~ 158 (225)
.+.+.|++|. ++|=|.++..++ ..++ .++=+++-+.+|.|+
T Consensus 117 ~g~ipVi~g~~g~~~~~sD~~A~~lA-~~l~-a~~li~~tdVdGvy~ 161 (229)
T cd04239 117 KGRIVIFGGGTGNPGFTTDTAAALRA-EEIG-ADVLLKATNVDGVYD 161 (229)
T ss_pred CCCEEEEeCccCCCCCCcHHHHHHHH-HHcC-CCEEEEEECCCcccC
Confidence 4456666776 567677766553 1222 123333446778774
No 305
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=25.37 E-value=1.6e+02 Score=20.82 Aligned_cols=33 Identities=39% Similarity=0.674 Sum_probs=22.8
Q ss_pred CEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 027287 117 DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 155 (225)
Q Consensus 117 Da~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g 155 (225)
--+|.+| +|++|+..+.+ .++|.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 3578889 69999998874 566654 555566544
No 306
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=25.35 E-value=1.1e+02 Score=25.48 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=19.5
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHH
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGK 45 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~ 45 (225)
+++|+|||||=++.+-.+...|+++-+
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~ 29 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAE 29 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHH
Confidence 457999999998877777666555443
No 307
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=25.34 E-value=3.1e+02 Score=24.83 Aligned_cols=72 Identities=11% Similarity=0.189 Sum_probs=41.7
Q ss_pred HHHHHHHhhCCEEEEe---cCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEE-
Q 027287 107 QRKAEMAKHSDAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIV- 182 (225)
Q Consensus 107 ~Rk~~mv~~sDa~Ivl---pGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~- 182 (225)
+....+...||++|+- ..|+|.. +.|+++ .++|||.-+.+|. .++ +.+ .....++
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma------~G~PVI~s~~gg~-~Ei-------v~~-----~~~G~~l~ 326 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMV--AVEAMA------AGKPVLASTKGGI-TEF-------VLE-----GITGYHLA 326 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccH--HHHHHH------cCCCEEEeCCCCc-Hhh-------ccc-----CCceEEEe
Confidence 3445567899998863 2455543 456663 6899999876542 222 111 1112212
Q ss_pred EcCCHHHHHHHHHhhcC
Q 027287 183 SAPNAKELMNKMEEYFP 199 (225)
Q Consensus 183 ~~~d~ee~~~~l~~~~~ 199 (225)
-..|++++.+.|.+...
T Consensus 327 ~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 327 EPMTSDSIISDINRTLA 343 (380)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 24588888888877654
No 308
>PTZ00378 hypothetical protein; Provisional
Probab=25.22 E-value=4.3e+02 Score=26.08 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=40.8
Q ss_pred HHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCC-CcE--EEEeCCCCchHHHHHHHHHHHcCCCCcc
Q 027287 110 AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHD-KPV--GLLNVDGYYNSLLTFIDKAVEEGFISPN 176 (225)
Q Consensus 110 ~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~-kPi--ill~~~g~w~~l~~~l~~~~~~gfi~~~ 176 (225)
-+--..++++++=|.-+||+.|..++..+.+- ++ +.| ++--..| -|.++.-|.-....+||...
T Consensus 391 gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~--~g~~~v~v~vShRSG-eD~~IAdLAVa~ga~~IKtG 457 (518)
T PTZ00378 391 GLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGE--DEGRAVTVLVQTLAG-NAATAAHLAVAMGARFLCSG 457 (518)
T ss_pred HHhcCCCceEEEccccceeHHHHHHHHHHHHH--cCCcEEccccCCCcC-CccHHHHHHHHcCCCccccC
Confidence 33344679999999999999999999987763 22 333 1222245 45555555444555666533
No 309
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=25.21 E-value=1.6e+02 Score=25.61 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=32.9
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIG 80 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viG 80 (225)
|++++|+| ... .-..|++.+++.||.++.|+. .--++....+...+..++|
T Consensus 1 m~~~~i~G-tGn--------iG~alA~~~a~ag~eV~igs~--r~~~~~~a~a~~l~~~i~~ 51 (211)
T COG2085 1 MMIIAIIG-TGN--------IGSALALRLAKAGHEVIIGSS--RGPKALAAAAAALGPLITG 51 (211)
T ss_pred CcEEEEec-cCh--------HHHHHHHHHHhCCCeEEEecC--CChhHHHHHHHhhcccccc
Confidence 46777774 332 224688999999999999975 3455555555555554444
No 310
>PRK05569 flavodoxin; Provisional
Probab=24.84 E-value=1.1e+02 Score=23.57 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=29.4
Q ss_pred HhhCCEEEEecCCc--c-cH-HHHHHHHHHHH-hCCCCCcEEEEeCCCCc-hHHHHHHHHHH-HcCC
Q 027287 113 AKHSDAFIALPGGY--G-TL-EELLEVITWAQ-LGIHDKPVGLLNVDGYY-NSLLTFIDKAV-EEGF 172 (225)
Q Consensus 113 v~~sDa~IvlpGG~--G-TL-~Ei~~a~~~~q-lg~~~kPiill~~~g~w-~~l~~~l~~~~-~~gf 172 (225)
+..+|++|+-..-+ | +. .++...+...+ +...+||++++.+.|.. ......++.++ ..|+
T Consensus 46 ~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~ 112 (141)
T PRK05569 46 VLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGF 112 (141)
T ss_pred HhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCC
Confidence 45678666554321 1 21 23333332222 12357999999887654 24444454443 3454
No 311
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=24.70 E-value=1.5e+02 Score=24.79 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=23.6
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
|+.|+|+ +...|.... -.|..||..||++|+.++
T Consensus 1 m~iI~v~-s~KGGvGKT--t~a~nla~~la~~g~~Vl 34 (246)
T TIGR03371 1 MKVIAIV-GVKGGVGKT--TLTANLASALKLLGEPVL 34 (246)
T ss_pred CcEEEEE-eCCCCccHH--HHHHHHHHHHHhCCCcEE
Confidence 4567777 445555443 467899999999997655
No 312
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=24.55 E-value=5.2e+02 Score=23.23 Aligned_cols=92 Identities=14% Similarity=0.217 Sum_probs=46.4
Q ss_pred HHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEee-----------cCCHHHHHHH
Q 027287 43 LGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKP-----------VADMHQRKAE 111 (225)
Q Consensus 43 lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~-----------~~~m~~Rk~~ 111 (225)
.-+.+.+.+..+|.=++ |......+..++.|..++..+++...-+.......+.+++ ..++. =...
T Consensus 79 ~~~~~~~~~v~~v~~~~--g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~-ll~~ 155 (307)
T TIGR03151 79 LVDLVIEEKVPVVTTGA--GNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMA-LVPQ 155 (307)
T ss_pred HHHHHHhCCCCEEEEcC--CCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHH-HHHH
Confidence 34444566777664332 4455566777777877777655432111111111222221 01111 0111
Q ss_pred HHhhCCEEEEecCCcccHHHHHHHHH
Q 027287 112 MAKHSDAFIALPGGYGTLEELLEVIT 137 (225)
Q Consensus 112 mv~~sDa~IvlpGG~GTL~Ei~~a~~ 137 (225)
+.+..+.-|+.-||+++-+.+..++.
T Consensus 156 v~~~~~iPviaaGGI~~~~~~~~al~ 181 (307)
T TIGR03151 156 VVDAVSIPVIAAGGIADGRGMAAAFA 181 (307)
T ss_pred HHHHhCCCEEEECCCCCHHHHHHHHH
Confidence 22334566888888888887777763
No 313
>PRK07109 short chain dehydrogenase; Provisional
Probab=24.48 E-value=2.9e+02 Score=24.69 Aligned_cols=55 Identities=9% Similarity=0.127 Sum_probs=31.3
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
.++|.|.|+|+. ..+.+++.|+++|+.|+.-+...--.+...+...+.|+++..+
T Consensus 8 ~k~vlITGas~g--------IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v 62 (334)
T PRK07109 8 RQVVVITGASAG--------VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAV 62 (334)
T ss_pred CCEEEEECCCCH--------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 356777766542 2456778888899998755433122222333333456666555
No 314
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.44 E-value=3.4e+02 Score=23.14 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=62.8
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE--EcCCCccHHHHHHHHHHhcCCeEEEEeCCccccC--CCCC
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV--YGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPR--EITG 93 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv--~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~--e~~~ 93 (225)
+.+.|.|+=+. ++ +.|.++++.|.+.|+.++ |=-.+ +..+++.+-..+.....||.=. .+.+. +...
T Consensus 3 ~~~vv~Vir~~----~~---~~a~~ia~al~~gGi~~iEit~~tp-~a~~~I~~l~~~~~~~~vGAGT-Vl~~e~a~~ai 73 (201)
T PRK06015 3 LQPVIPVLLID----DV---EHAVPLARALAAGGLPAIEITLRTP-AALDAIRAVAAEVEEAIVGAGT-ILNAKQFEDAA 73 (201)
T ss_pred CCCEEEEEEcC----CH---HHHHHHHHHHHHCCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEeeEe-CcCHHHHHHHH
Confidence 34567777321 22 457889999999998887 33344 7788777766566677788721 11110 0011
Q ss_pred CCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHH
Q 027287 94 ETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVI 136 (225)
Q Consensus 94 ~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~ 136 (225)
+--.+.++.+.+.. ..+-......+.++|| .-|..|+..+|
T Consensus 74 ~aGA~FivSP~~~~-~vi~~a~~~~i~~iPG-~~TptEi~~A~ 114 (201)
T PRK06015 74 KAGSRFIVSPGTTQ-ELLAAANDSDVPLLPG-AATPSEVMALR 114 (201)
T ss_pred HcCCCEEECCCCCH-HHHHHHHHcCCCEeCC-CCCHHHHHHHH
Confidence 11124555555532 2222233446777886 56999999988
No 315
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=24.42 E-value=2.1e+02 Score=26.59 Aligned_cols=90 Identities=22% Similarity=0.321 Sum_probs=54.3
Q ss_pred EEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCC---c---------------hHHHHHHHHHHHcCCCCccccC
Q 027287 118 AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY---Y---------------NSLLTFIDKAVEEGFISPNARH 179 (225)
Q Consensus 118 a~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~---w---------------~~l~~~l~~~~~~gfi~~~~~~ 179 (225)
++|+++|-.||+. ++ ...|....|+..|..++- | +..+.+|+++.+.. ....-
T Consensus 5 gviilGgahgtla-----lA-RSfg~~~vpv~~ls~d~plPt~Sr~vr~t~~w~gphd~gaiafLrd~Aekh---glkg~ 75 (415)
T COG3919 5 GVIILGGAHGTLA-----LA-RSFGEEFVPVLALSADGPLPTYSRIVRVTTHWNGPHDEGAIAFLRDFAEKH---GLKGY 75 (415)
T ss_pred ceEEEcccchhHH-----HH-HhhccccceEEEEecCCCCcchhhhheeeeccCCCCcccHHHHHHHHHhhc---CcCce
Confidence 6899999999975 21 234545689888765431 2 25577777776543 11223
Q ss_pred cEEEcCCHH-----HHHHHHHhhcCCcccccccccccccccc
Q 027287 180 IIVSAPNAK-----ELMNKMEEYFPQHERVASKLSWENEQFG 216 (225)
Q Consensus 180 ~i~~~~d~e-----e~~~~l~~~~~~~~~~~~~~~w~~~~~~ 216 (225)
+++-+.|++ .-.+.|..++......|..|+|.-+.|-
T Consensus 76 LLva~GDgev~lvSq~reeLSa~f~v~lp~w~~l~wlceKPl 117 (415)
T COG3919 76 LLVACGDGEVLLVSQYREELSAFFEVPLPDWALLRWLCEKPL 117 (415)
T ss_pred EEEecCCceeeehHhhHHHHHHHhcCCCCcHHHHHHHhhCcH
Confidence 345555554 3345555566555557888899865443
No 316
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=24.42 E-value=1.2e+02 Score=27.02 Aligned_cols=40 Identities=30% Similarity=0.596 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHH-HHHHHHc
Q 027287 128 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTF-IDKAVEE 170 (225)
Q Consensus 128 TL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~-l~~~~~~ 170 (225)
|++.+++.+.-.+-...+.|++++ +||+++... +++.+++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm---~Y~N~i~~~G~e~F~~~ 110 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLM---TYYNPIFQYGIERFFKE 110 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEE---E-HHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCCEEEE---eeccHHhccchHHHHHH
No 317
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=24.25 E-value=2e+02 Score=24.28 Aligned_cols=33 Identities=12% Similarity=0.438 Sum_probs=18.6
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVY 56 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~ 56 (225)
.++|.|+||+...-.+.+ -++|.|++.++.|..
T Consensus 45 ~~~v~vl~G~GNNGGDGl-----v~AR~L~~~~v~V~~ 77 (205)
T TIGR00197 45 AGHVIIFCGPGNNGGDGF-----VVARHLKGFGVEVFL 77 (205)
T ss_pred CCeEEEEECCCCCccHHH-----HHHHHHHhCCCEEEE
Confidence 456888887765334443 244445446666553
No 318
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=24.17 E-value=98 Score=26.56 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=20.4
Q ss_pred ceEEEEeCCCCC-CChHHHHHHHHHHHHHHhCCCeEEEcC
Q 027287 20 NRICVFCGSSAG-KKSTYKDAAIELGKELVARNIDLVYGG 58 (225)
Q Consensus 20 ~~V~Vfggs~~~-~~~~~~~~A~~lG~~LA~~G~~lv~GG 58 (225)
++|+|+.++-.. ..-+..+. ..--..|.+.|+.+..=+
T Consensus 2 kkVlills~~~~~dG~e~~E~-~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEA-VLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CEEEEEEccCCCCCCEehhHH-HHHHHHHHHCCCEEEEEe
Confidence 578887653221 11122222 345566778899877643
No 319
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=24.10 E-value=1.6e+02 Score=25.12 Aligned_cols=33 Identities=15% Similarity=0.376 Sum_probs=23.7
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
|++|+|+ + .-|.... -.|..|+..||+.|+.++
T Consensus 1 m~~iav~-~-KGGvGKT--T~~~nLA~~La~~G~kVl 33 (270)
T cd02040 1 MRQIAIY-G-KGGIGKS--TTTQNLSAALAEMGKKVM 33 (270)
T ss_pred CcEEEEE-e-CCcCCHH--HHHHHHHHHHHhCCCeEE
Confidence 4688988 4 4454443 457889999999998555
No 320
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=24.08 E-value=1.7e+02 Score=23.19 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=26.6
Q ss_pred HHHHHHHHh-CCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 41 IELGKELVA-RNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 41 ~~lG~~LA~-~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
.++-+.+.. ++..|.+||| -++..-+...+...|.+|-+
T Consensus 52 ~~~l~~l~~~~~~VIa~GGG--~~~~~~~~~~L~~~g~vI~L 91 (158)
T PF01202_consen 52 SEALRELLKENNCVIACGGG--IVLKEENRELLKENGLVIYL 91 (158)
T ss_dssp HHHHHHHHCSSSEEEEE-TT--GGGSHHHHHHHHHHSEEEEE
T ss_pred HHHHHHHhccCcEEEeCCCC--CcCcHHHHHHHHhCCEEEEE
Confidence 334444444 4778888887 46667777788888988887
No 321
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.00 E-value=3.9e+02 Score=23.95 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=42.5
Q ss_pred cceEEEEeCCCCCC---ChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHH--HHHHHhcCCeEEEEeCCcc
Q 027287 19 FNRICVFCGSSAGK---KSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLI--SQAVYDGGRHVIGVIPKTL 86 (225)
Q Consensus 19 ~~~V~Vfggs~~~~---~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~--a~gA~~aGG~viGIiP~~~ 86 (225)
..-|.|.|++.... +++..+..+...+. +.....|+.|-|..+.-+++ ++-|.++|..-+-++|..+
T Consensus 43 v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 43 VDGILTMGTFGECATLTWEEKQAFVATVVET-VAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred CCEEEECcccccchhCCHHHHHHHHHHHHHH-hCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 34566666655432 45555555444444 34558888888766887777 4667778888788876654
No 322
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=23.95 E-value=2.1e+02 Score=24.61 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=41.1
Q ss_pred HHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHh-CCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 027287 107 QRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP 185 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~ql-g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 185 (225)
.+....+..+|.+|+++ -..+. .-++.+... ...+.|++++|.+... ++. ...+.+..
T Consensus 169 ~~a~~~~~~~dl~lviG-Tsl~V---~p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~~--~~~~~i~~ 227 (242)
T PRK00481 169 DEAYEALEEADLFIVIG-TSLVV---YPAAGLPYEAREHGAKTVEINLEPTP---------------LDS--LFDLVIHG 227 (242)
T ss_pred HHHHHHHhcCCEEEEEC-CCceE---cCHhHHHHHHHHCCCeEEEECCCCCC---------------CCC--ccCEEEEC
Confidence 45555667889999965 33333 222222221 2357899999976321 111 12367788
Q ss_pred CHHHHHHHHHh
Q 027287 186 NAKELMNKMEE 196 (225)
Q Consensus 186 d~ee~~~~l~~ 196 (225)
+.++++..|.+
T Consensus 228 ~~~~~l~~l~~ 238 (242)
T PRK00481 228 KAGEVVPELVE 238 (242)
T ss_pred CHHHHHHHHHH
Confidence 99999988865
No 323
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=23.94 E-value=1e+02 Score=25.97 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=20.3
Q ss_pred EeCCCCCCC---hHHHHHHHHHHHHHHhCCCeEEEcCCC
Q 027287 25 FCGSSAGKK---STYKDAAIELGKELVARNIDLVYGGGS 60 (225)
Q Consensus 25 fggs~~~~~---~~~~~~A~~lG~~LA~~G~~lv~GGg~ 60 (225)
+|||..... +...+.|+++.++..+....||.|||.
T Consensus 5 lGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~ 43 (221)
T TIGR02076 5 LGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGK 43 (221)
T ss_pred echhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcH
Confidence 667766542 344445555554433345677898863
No 324
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.86 E-value=3.9e+02 Score=23.72 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=33.9
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCe-----------EEEcCCCccHHHHHHHHHHhc-CCeEEEE
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNID-----------LVYGGGSVGLMGLISQAVYDG-GRHVIGV 81 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~-----------lv~GGg~~GlM~a~a~gA~~a-GG~viGI 81 (225)
++|+++. +.. . ...+.+.++.++|.++|+. ++.| |. |-|=.+++.+... .-.++||
T Consensus 3 ~~i~iv~--~~~-~-~a~~~~~~l~~~l~~~g~~~~~~~~~~D~vi~lG-GD-GT~L~a~~~~~~~~~~pilgI 70 (264)
T PRK03501 3 RNLFFFY--KRD-K-ELVEKVKPLKKIAEEYGFTVVDHPKNANIIVSIG-GD-GTFLQAVRKTGFREDCLYAGI 70 (264)
T ss_pred cEEEEEE--CCC-H-HHHHHHHHHHHHHHHCCCEEEcCCCCccEEEEEC-Cc-HHHHHHHHHhcccCCCeEEeE
Confidence 4788884 222 2 4556788888888776644 3445 44 7776666654332 3456676
No 325
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.82 E-value=4e+02 Score=21.60 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=39.9
Q ss_pred HhhhcccCCcceEEEEeCCCCCCChHH----------------HHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHh
Q 027287 10 EMEMNNQSKFNRICVFCGSSAGKKSTY----------------KDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYD 73 (225)
Q Consensus 10 ~~~~~~~~~~~~V~Vfggs~~~~~~~~----------------~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~ 73 (225)
..+.......++|+|++......+-.. .+..+..-+.+.+.|+.++-||+. +.+-|.+
T Consensus 68 ~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~------~~~~A~~ 141 (176)
T PF06506_consen 68 RALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGV------VCRLARK 141 (176)
T ss_dssp HHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHH------HHHHHHH
T ss_pred HHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHH------HHHHHHH
Confidence 344555666688999876555422111 123455566777899999999853 3577778
Q ss_pred cCCeEEEE
Q 027287 74 GGRHVIGV 81 (225)
Q Consensus 74 aGG~viGI 81 (225)
.|-+++=+
T Consensus 142 ~gl~~v~i 149 (176)
T PF06506_consen 142 LGLPGVLI 149 (176)
T ss_dssp TTSEEEES
T ss_pred cCCcEEEE
Confidence 88876544
No 326
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=23.81 E-value=1.8e+02 Score=20.60 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=25.9
Q ss_pred HHhhhcccCCcceEEEEeCCCC-CCChHHHHHHHHHHHHHHhC-CCeEEEcCCC
Q 027287 9 MEMEMNNQSKFNRICVFCGSSA-GKKSTYKDAAIELGKELVAR-NIDLVYGGGS 60 (225)
Q Consensus 9 ~~~~~~~~~~~~~V~Vfggs~~-~~~~~~~~~A~~lG~~LA~~-G~~lv~GGg~ 60 (225)
.+.+.......+.|+|||.... +... .+.-.++++.+++. ...+++|..+
T Consensus 31 l~~l~~~~~~~~~i~V~G~~~d~g~~~--~~~~~~~~~~~~~~~d~vi~~~~~~ 82 (91)
T PF02875_consen 31 LEALKELYPKGRIIAVFGAMGDLGSKD--KDFHEEIGELAAQLADVVILTGDNP 82 (91)
T ss_dssp HHHHHHHCTTSEEEEEEEEBTT-HTSH--HHCHHHHHHHHTTCSSEEEEETSBT
T ss_pred HHHHHHhccCCcEEEEEcccccccccc--HHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 3444444456678888874222 2222 12235678877774 4444445543
No 327
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=23.69 E-value=1.1e+02 Score=25.98 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=18.9
Q ss_pred EeCCCCCCC---hHHHHHHHHHHHHHHhCCCeEEEcCCC
Q 027287 25 FCGSSAGKK---STYKDAAIELGKELVARNIDLVYGGGS 60 (225)
Q Consensus 25 fggs~~~~~---~~~~~~A~~lG~~LA~~G~~lv~GGg~ 60 (225)
||||..... +...+.|+++.+........||.|||.
T Consensus 6 lGGs~l~~~~~~~~i~~~~~~i~~~~~~~~iiiV~GgG~ 44 (221)
T cd04253 6 LGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGR 44 (221)
T ss_pred eccceeCCCCChHHHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 777775432 333344444443222234668899985
No 328
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.68 E-value=4e+02 Score=23.71 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=17.8
Q ss_pred CCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 51 NIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 51 G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
.+.|+.|| .|.+-.+++ ....+-.++||
T Consensus 59 d~vi~iGG--DGTlL~a~~-~~~~~~pi~gI 86 (277)
T PRK03708 59 DFIIAIGG--DGTILRIEH-KTKKDIPILGI 86 (277)
T ss_pred CEEEEEeC--cHHHHHHHH-hcCCCCeEEEE
Confidence 45555554 488876666 65656666666
No 329
>PRK07677 short chain dehydrogenase; Provisional
Probab=23.67 E-value=1.3e+02 Score=25.11 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=17.2
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGG 58 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 58 (225)
++.|.|+++. ....+++.|+++|+.|+.-+
T Consensus 3 ~~lItG~s~g--------iG~~ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 3 VVIITGGSSG--------MGKAMAKRFAEEGANVVITG 32 (252)
T ss_pred EEEEeCCCCh--------HHHHHHHHHHHCCCEEEEEe
Confidence 4556655442 23456666677777765443
No 330
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=23.65 E-value=3e+02 Score=22.96 Aligned_cols=73 Identities=18% Similarity=0.377 Sum_probs=42.3
Q ss_pred HHHHHHHhhCCEEEEec--CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEc
Q 027287 107 QRKAEMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSA 184 (225)
Q Consensus 107 ~Rk~~mv~~sDa~Ivlp--GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 184 (225)
+...-+...||++|... .|+|+- +.|++. .++|++.-+..+. ..+ +.. .....++-.
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~--~~Ea~~------~G~pvI~~~~~~~-~~~-------~~~-----~~~g~~~~~ 328 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLV--LLEAMA------CGLPVVATDVGGI-PEI-------ITD-----GENGLLVPP 328 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChH--HHHHHh------cCCCEEEecCCCh-HHH-------hcC-----CcceeEECC
Confidence 34455677899877553 233332 445552 6899998765432 221 111 111245556
Q ss_pred CCHHHHHHHHHhhcCC
Q 027287 185 PNAKELMNKMEEYFPQ 200 (225)
Q Consensus 185 ~d~ee~~~~l~~~~~~ 200 (225)
+|++++.+.|.+....
T Consensus 329 ~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 329 GDPEALAEAILRLLAD 344 (377)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 7999998888887644
No 331
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=23.64 E-value=2e+02 Score=27.29 Aligned_cols=69 Identities=25% Similarity=0.302 Sum_probs=38.1
Q ss_pred CeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCC-CCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHH
Q 027287 52 IDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITG-ETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLE 130 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~-~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~ 130 (225)
..+|.|.|+.|+. ++..++..|.+|+.+-++... .+.+. ..+ +.. .+. . .+..+|.+|-..|..++++
T Consensus 204 tVvViG~G~IG~~--va~~ak~~Ga~ViV~d~d~~R-~~~A~~~G~-~~~---~~~---e-~v~~aDVVI~atG~~~~i~ 272 (413)
T cd00401 204 VAVVAGYGDVGKG--CAQSLRGQGARVIVTEVDPIC-ALQAAMEGY-EVM---TME---E-AVKEGDIFVTTTGNKDIIT 272 (413)
T ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEEEECChhh-HHHHHhcCC-EEc---cHH---H-HHcCCCEEEECCCCHHHHH
Confidence 4567888876664 455667778888776332111 01111 111 111 121 2 2367899998888777766
Q ss_pred H
Q 027287 131 E 131 (225)
Q Consensus 131 E 131 (225)
+
T Consensus 273 ~ 273 (413)
T cd00401 273 G 273 (413)
T ss_pred H
Confidence 4
No 332
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.63 E-value=1.7e+02 Score=26.27 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=23.5
Q ss_pred hCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027287 115 HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 154 (225)
Q Consensus 115 ~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~ 154 (225)
.+|. |+.-||=||+.+++..+ ...++||+=+|.+
T Consensus 62 ~~d~-vi~~GGDGt~l~~~~~~-----~~~~~Pvlgin~G 95 (295)
T PRK01231 62 VCDL-VIVVGGDGSLLGAARAL-----ARHNVPVLGINRG 95 (295)
T ss_pred CCCE-EEEEeCcHHHHHHHHHh-----cCCCCCEEEEeCC
Confidence 3554 55568899999887554 2357898877763
No 333
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.54 E-value=2.3e+02 Score=26.26 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=11.9
Q ss_pred CcEEEEeCCCCchHHHHHHHHHH
Q 027287 146 KPVGLLNVDGYYNSLLTFIDKAV 168 (225)
Q Consensus 146 kPiill~~~g~w~~l~~~l~~~~ 168 (225)
.|+|.+.++.-=....+++.++.
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL 130 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIF 130 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH
Confidence 57776654433344445555544
No 334
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=23.51 E-value=3.8e+02 Score=25.03 Aligned_cols=75 Identities=13% Similarity=0.259 Sum_probs=42.9
Q ss_pred HHHHHHHhhCCEEEEec--CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEc
Q 027287 107 QRKAEMAKHSDAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSA 184 (225)
Q Consensus 107 ~Rk~~mv~~sDa~Ivlp--GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 184 (225)
+....++..||++|.-. .|+|. =++|+++ .++|||.-+.+|. .+++ +.. .......++-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA------~G~PVI~s~~gg~-~eiv-------~~~--~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMA------SGVPVVAARAGGI-PDII-------PPD--QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHH------cCCCEEEcCCCCc-Hhhh-------hcC--CCCCceEEeCC
Confidence 44556778999988543 23443 2455563 6899998776543 2222 110 00122344445
Q ss_pred CCHHHHHHHHHhhcC
Q 027287 185 PNAKELMNKMEEYFP 199 (225)
Q Consensus 185 ~d~ee~~~~l~~~~~ 199 (225)
+|++++.+.|.+...
T Consensus 385 ~d~~~la~~i~~ll~ 399 (465)
T PLN02871 385 GDVDDCVEKLETLLA 399 (465)
T ss_pred CCHHHHHHHHHHHHh
Confidence 788888888877653
No 335
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=23.47 E-value=1.3e+02 Score=28.31 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=27.9
Q ss_pred hhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeC
Q 027287 114 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 153 (225)
Q Consensus 114 ~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~ 153 (225)
+..|+|||+.| .-||+|.+..+.+.- . ..|||++.+.
T Consensus 120 ~~~~G~VV~HG-TDTLe~tAffls~~~-~-t~KPIVitGa 156 (368)
T KOG0503|consen 120 KSYDGIVVTHG-TDTLEETAFFLSFTI-N-TLKPIVITGA 156 (368)
T ss_pred cccCcEEEEcC-cchHHHHHHHHHHHH-h-cCCcEEEecc
Confidence 34789999885 789999998886543 2 2399999754
No 336
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=23.43 E-value=1.6e+02 Score=24.66 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=9.2
Q ss_pred hhCCEEEEecCCcccHHH
Q 027287 114 KHSDAFIALPGGYGTLEE 131 (225)
Q Consensus 114 ~~sDa~IvlpGG~GTL~E 131 (225)
...|++|+.+....++++
T Consensus 59 ~~vdgiIi~~~~~~~~~~ 76 (272)
T cd06300 59 QGVDAIIINPASPTALNP 76 (272)
T ss_pred cCCCEEEEeCCChhhhHH
Confidence 355666666644333333
No 337
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.41 E-value=3.9e+02 Score=22.19 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEcCCCccH
Q 027287 34 STYKDAAIELGKELVARNIDLVYGGGSVGL 63 (225)
Q Consensus 34 ~~~~~~A~~lG~~LA~~G~~lv~GGg~~Gl 63 (225)
+...+.+..+.+.+.+.+...++|-|..++
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~G~G~S~~ 57 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSCGNGGSHC 57 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 456666677777776779999999886443
No 338
>PRK09330 cell division protein FtsZ; Validated
Probab=23.39 E-value=3.9e+02 Score=25.16 Aligned_cols=73 Identities=22% Similarity=0.397 Sum_probs=39.4
Q ss_pred HHHHHhCCCeEEE---cCCC-ccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceEeecCCHHHHHHHHHhhCCEE
Q 027287 44 GKELVARNIDLVY---GGGS-VGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAF 119 (225)
Q Consensus 44 G~~LA~~G~~lv~---GGg~-~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~sDa~ 119 (225)
-+.|-..+..+|+ |||. .|.=-.+++-|.+.|..+++|.|.-+. .|... ... .=..--..|.+.+|.+
T Consensus 92 ~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~-fEG~~----r~~---nA~~gL~~L~~~~D~v 163 (384)
T PRK09330 92 REALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFS-FEGKK----RMK---QAEEGIEELRKHVDTL 163 (384)
T ss_pred HHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCcc-ccchh----HHH---HHHHHHHHHHHHCCEE
Confidence 3444334444443 3443 245557788899999999999763211 11000 000 0023344566789998
Q ss_pred EEecC
Q 027287 120 IALPG 124 (225)
Q Consensus 120 IvlpG 124 (225)
|++|=
T Consensus 164 Ivi~N 168 (384)
T PRK09330 164 IVIPN 168 (384)
T ss_pred EEEec
Confidence 88873
No 339
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=23.37 E-value=4.4e+02 Score=21.96 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=36.8
Q ss_pred CeEEEcCCCccHHHHH-HHHHHhcCCeEEEEeCCccccCCCCCCCCceEeec---CCHHHHHHHHHhhCCEEEEe
Q 027287 52 IDLVYGGGSVGLMGLI-SQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPV---ADMHQRKAEMAKHSDAFIAL 122 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~-a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~~~~---~~m~~Rk~~mv~~sDa~Ivl 122 (225)
.+.++=-. .|-|+.+ ++.|...|..|+=|.-.... ..++..+.+.+ .+|.+.-......+|++|..
T Consensus 20 VR~ItN~S-SG~~G~~lA~~~~~~Ga~V~li~g~~~~----~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 20 VRFITNRS-SGKMGAALAEEAARRGAEVTLIHGPSSL----PPPPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp SEEEEES---SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred ceEecCCC-cCHHHHHHHHHHHHCCCEEEEEecCccc----cccccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 45555555 4999876 77888899999888433211 11223344433 45566666666778888765
No 340
>PLN00222 tubulin gamma chain; Provisional
Probab=23.30 E-value=2.6e+02 Score=26.79 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=19.0
Q ss_pred CCCeEEE--cCCC-cc----HHHHHHHHHHhcCCeEEEEeCCc
Q 027287 50 RNIDLVY--GGGS-VG----LMGLISQAVYDGGRHVIGVIPKT 85 (225)
Q Consensus 50 ~G~~lv~--GGg~-~G----lM~a~a~gA~~aGG~viGIiP~~ 85 (225)
.|+.++. |||. .| +++.+.+.--+.--.++.|.|..
T Consensus 133 ~gf~i~~sl~GGTGSGlgs~lle~L~d~y~~~~~~~~~v~P~~ 175 (454)
T PLN00222 133 EGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQ 175 (454)
T ss_pred cceEEeecCCCCccchHHHHHHHHHHhhcCCcceeeEEecCCC
Confidence 6888884 5554 13 44444443222234556777853
No 341
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=23.05 E-value=1e+02 Score=26.41 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027287 107 QRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 154 (225)
Q Consensus 107 ~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~ 154 (225)
++....++.+|.+|++ ||--.+.-++.+.+...++.|++++|.+
T Consensus 163 ~~~~~~~~~~Dlllvi----GTSl~v~p~~~l~~~~~~~~~~i~iN~~ 206 (225)
T cd01411 163 EEAIQAIEKADLLVIV----GTSFVVYPFAGLIDYRQAGANLIAINKE 206 (225)
T ss_pred HHHHHHHhcCCEEEEE----CcCCeehhHHHHHHHHhCCCeEEEECCC
Confidence 5566667789987773 3433444444443332357899999975
No 342
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=22.93 E-value=5.8e+02 Score=23.20 Aligned_cols=31 Identities=19% Similarity=0.037 Sum_probs=18.6
Q ss_pred CeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCC
Q 027287 52 IDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPK 84 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~ 84 (225)
..+|.|+|..| -++..-|...|.+++.+...
T Consensus 181 ~VlV~G~G~vG--~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 181 RLGVNGLGGLG--HIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred EEEEEcccHHH--HHHHHHHHHcCCeEEEEeCC
Confidence 34455554333 34566677788888887543
No 343
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=22.92 E-value=1.4e+02 Score=24.78 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=18.5
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGG 58 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 58 (225)
++|-|.|+++. ....+++.|+++|+.|+--+
T Consensus 6 k~vlItGas~g--------IG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 6 KVALVTGANTG--------LGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEc
Confidence 46666655432 23456667777888766443
No 344
>PRK06194 hypothetical protein; Provisional
Probab=22.91 E-value=3.9e+02 Score=22.66 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=21.0
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGG 58 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 58 (225)
++|-|.|+++. ....+++.|+++|+.|+.-+
T Consensus 7 k~vlVtGasgg--------IG~~la~~l~~~G~~V~~~~ 37 (287)
T PRK06194 7 KVAVITGAASG--------FGLAFARIGAALGMKLVLAD 37 (287)
T ss_pred CEEEEeCCccH--------HHHHHHHHHHHCCCEEEEEe
Confidence 57778876653 23457777888899877544
No 345
>PRK05717 oxidoreductase; Validated
Probab=22.88 E-value=1.4e+02 Score=25.05 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=0.0
Q ss_pred hhhcccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 11 MEMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 11 ~~~~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
+...+..+.++|.|.|+++. ..+.+++.|+++|+.|+
T Consensus 2 ~~~~~~~~~k~vlItG~sg~--------IG~~~a~~l~~~g~~v~ 38 (255)
T PRK05717 2 SEPNPGHNGRVALVTGAARG--------IGLGIAAWLIAEGWQVV 38 (255)
T ss_pred CCCCcccCCCEEEEeCCcch--------HHHHHHHHHHHcCCEEE
No 346
>PRK07102 short chain dehydrogenase; Provisional
Probab=22.84 E-value=1.3e+02 Score=24.95 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=18.5
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYG 57 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 57 (225)
++|.|.|+++. ....+++.|+++|+.|+--
T Consensus 2 ~~vlItGas~g--------iG~~~a~~l~~~G~~Vi~~ 31 (243)
T PRK07102 2 KKILIIGATSD--------IARACARRYAAAGARLYLA 31 (243)
T ss_pred cEEEEEcCCcH--------HHHHHHHHHHhcCCEEEEE
Confidence 56777765542 2345666777778776543
No 347
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=22.75 E-value=5.6e+02 Score=23.93 Aligned_cols=94 Identities=26% Similarity=0.290 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHh----CCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCc-cccCCCCCCCCceEee--------cCC
Q 027287 38 DAAIELGKELVA----RNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKT-LMPREITGETVGEVKP--------VAD 104 (225)
Q Consensus 38 ~~A~~lG~~LA~----~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~-~~~~e~~~~~~~~~~~--------~~~ 104 (225)
+.|.++.+-+|+ .|..|| ||=+.=+.+-...+=.+.-|.++|+.... ..+.+... -.++++ ..+
T Consensus 114 ~~~~~iv~GiaeGc~~ag~aLv-GGETAeMPg~y~~g~yDlaG~~vGvvek~~ii~g~~i~--~GDviigl~SSG~HSNG 190 (345)
T COG0150 114 EVAAQIVKGIAEGCKQAGCALV-GGETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVK--EGDVIIGLASSGLHSNG 190 (345)
T ss_pred HHHHHHHHHHHHHHHHhCCEEe-ccccccCCCcccCCceeeeeeEEEEEEccccccccccC--CCCEEEEecCCCcCCCc
Confidence 345677777765 799988 66542222222333467778899997633 22211111 123332 133
Q ss_pred H-HHHHHHHHhhCCEEEEecCCcc-cHHHHHH
Q 027287 105 M-HQRKAEMAKHSDAFIALPGGYG-TLEELLE 134 (225)
Q Consensus 105 m-~~Rk~~mv~~sDa~IvlpGG~G-TL~Ei~~ 134 (225)
+ -.||.+....-+.---+|.+.| ||-|.+.
T Consensus 191 ySLvRKi~~~~~~~~~~~~~~~~g~~l~e~LL 222 (345)
T COG0150 191 YSLVRKIIEESGLDYDDELPEELGKTLGEELL 222 (345)
T ss_pred hHHHHHHHHhcCccccccCccccccCHHHHhc
Confidence 4 3788766533333445788777 8887764
No 348
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=22.74 E-value=4.6e+02 Score=22.00 Aligned_cols=72 Identities=14% Similarity=0.284 Sum_probs=42.6
Q ss_pred HHHHHHHhhCCEEEEec---CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEE
Q 027287 107 QRKAEMAKHSDAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVS 183 (225)
Q Consensus 107 ~Rk~~mv~~sDa~Ivlp---GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 183 (225)
+.-.-++..||++|.-. .|.|. =++|++. .++|+|.-+..+ ...+ +.. .....++-
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~-~~e~-------i~~-----~~~g~~~~ 312 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPL--VIREALA------AGVPVIASDIGG-MAEL-------VRD-----GVNGLLFP 312 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCCh--HHHHHHH------CCCCEEECCCCC-HHHH-------hcC-----CCcEEEEC
Confidence 44455778899887542 34443 2455553 689999876543 2222 111 12234555
Q ss_pred cCCHHHHHHHHHhhcC
Q 027287 184 APNAKELMNKMEEYFP 199 (225)
Q Consensus 184 ~~d~ee~~~~l~~~~~ 199 (225)
.+|++++.+.+.+...
T Consensus 313 ~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 313 PGDAEDLAAALERLID 328 (359)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6678999888888754
No 349
>PRK07478 short chain dehydrogenase; Provisional
Probab=22.73 E-value=4.3e+02 Score=21.94 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
+.+++.|.|+++. ....+++.|+++|+.|+.-+-...--+.+.....+.++.+..+
T Consensus 5 ~~k~~lItGas~g--------iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (254)
T PRK07478 5 NGKVAIITGASSG--------IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVAL 60 (254)
T ss_pred CCCEEEEeCCCCh--------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
No 350
>PRK05854 short chain dehydrogenase; Provisional
Probab=22.68 E-value=1.3e+02 Score=26.53 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCeEEEcCC
Q 027287 40 AIELGKELVARNIDLVYGGG 59 (225)
Q Consensus 40 A~~lG~~LA~~G~~lv~GGg 59 (225)
..++++.|+++|+.|+..+.
T Consensus 27 G~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 27 GLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 35677778889998876554
No 351
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=22.64 E-value=4.4e+02 Score=21.72 Aligned_cols=113 Identities=10% Similarity=0.070 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCcccc---CCCCCCCCceEee----cCCHHHHHH
Q 027287 38 DAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMP---REITGETVGEVKP----VADMHQRKA 110 (225)
Q Consensus 38 ~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~---~e~~~~~~~~~~~----~~~m~~Rk~ 110 (225)
+....+.+.+......+++.|=| ++-+....-+...+..-+=|+|..-.. .....-++.+..+ ......+..
T Consensus 55 ~~~~~i~~~~~g~~vv~l~~GDP-~~~~~~~~l~~~~~~~~v~iiPGiSs~~~a~a~~g~~l~~~~~is~~~~~~~~~~~ 133 (204)
T TIGR02467 55 ELLEFIAATRKEKRVVVLASGDP-LFYGIGRTLAERLGKERLEIIPGISSVQYAFARLGLPWQDAVVISLHGRELDELLL 133 (204)
T ss_pred HHHHHHHHhcCCCCEEEEecCCC-cccccHHHHHHhCCCCcEEEeCChHHHHHHHHHcCCChhhCeEEEeeCCCCcHHHH
Confidence 33444444333334556676544 777766655555554345667764200 0000111111111 111122222
Q ss_pred HHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCC-cEEEEeC
Q 027287 111 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDK-PVGLLNV 153 (225)
Q Consensus 111 ~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~k-Piill~~ 153 (225)
..+...+.++++.++-.++.++.+.+. ..|..+. |+.+...
T Consensus 134 ~~l~~~~~~vvl~~~~~~~~~i~~~L~--~~g~~~~~~v~v~~~ 175 (204)
T TIGR02467 134 ALLRGHRKVAVLTDPRNGPAEIARELI--ELGIGGSYELTVGEN 175 (204)
T ss_pred HHHhcCCcEEEEeCCCCCHHHHHHHHH--HCCCCCCeEEEEEcc
Confidence 334567778888888889999998763 4554344 8877643
No 352
>PRK06924 short chain dehydrogenase; Provisional
Probab=22.57 E-value=1.4e+02 Score=24.73 Aligned_cols=29 Identities=7% Similarity=0.213 Sum_probs=0.0
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
|++|.|.|+++ -..+.+++.|+++|+.|+
T Consensus 1 ~k~vlItGasg--------giG~~ia~~l~~~g~~V~ 29 (251)
T PRK06924 1 MRYVIITGTSQ--------GLGEAIANQLLEKGTHVI 29 (251)
T ss_pred CcEEEEecCCc--------hHHHHHHHHHHhcCCEEE
No 353
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.57 E-value=1.5e+02 Score=24.65 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=27.5
Q ss_pred HHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 027287 111 EMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 154 (225)
Q Consensus 111 ~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~ 154 (225)
.+-...|++|+.|--...+.++.+.+. ..+.||++++..
T Consensus 51 ~i~~~~d~Iiv~~~~~~~~~~~l~~~~-----~~gIpvv~~d~~ 89 (257)
T PF13407_consen 51 AISQGVDGIIVSPVDPDSLAPFLEKAK-----AAGIPVVTVDSD 89 (257)
T ss_dssp HHHTTESEEEEESSSTTTTHHHHHHHH-----HTTSEEEEESST
T ss_pred HHHhcCCEEEecCCCHHHHHHHHHHHh-----hcCceEEEEecc
Confidence 345568999999888766666665542 246899998765
No 354
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=22.51 E-value=3.4e+02 Score=23.73 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=39.8
Q ss_pred HHHHHhhCCEEEEe--cCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 027287 109 KAEMAKHSDAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPN 186 (225)
Q Consensus 109 k~~mv~~sDa~Ivl--pGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 186 (225)
..-+...||++|.- ..|.|.- ++|++. .++|++..+..| ..++ +.+ .....++-.+|
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a------~G~Pvi~s~~~~----~~e~----i~~-----~~~g~~~~~~~ 354 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAMA------CGLPVVATAVGG----PRDI----VVD-----GVTGLLVDPRD 354 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHHh------cCCCEEECCCCC----HHHH----ccC-----CCCeEEeCCCC
Confidence 34466789998743 2344432 455553 689998876543 2221 211 12233444468
Q ss_pred HHHHHHHHHhhcC
Q 027287 187 AKELMNKMEEYFP 199 (225)
Q Consensus 187 ~ee~~~~l~~~~~ 199 (225)
++++.+.|.+...
T Consensus 355 ~~~l~~~i~~l~~ 367 (398)
T cd03800 355 PEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 9988888887653
No 355
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=22.50 E-value=2.1e+02 Score=25.78 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=25.4
Q ss_pred hhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEe
Q 027287 114 KHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 152 (225)
Q Consensus 114 ~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~ 152 (225)
+..|+|||..| .-||+|....+.+.- ...+|||||-+
T Consensus 71 ~~~~GvVVtHG-TDTme~tA~~Ls~~l-~~l~kPVVlTG 107 (313)
T PF00710_consen 71 DDYDGVVVTHG-TDTMEETAFFLSLLL-DNLDKPVVLTG 107 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHHE-ES-SSEEEEE-
T ss_pred HhcCeEEEecC-chHHHHHHHHHHHHh-cCCCCCEEEeC
Confidence 45889888864 789999998876432 22379999875
No 356
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.48 E-value=1.1e+02 Score=26.32 Aligned_cols=30 Identities=37% Similarity=0.492 Sum_probs=26.5
Q ss_pred CeEEEcCCCccHHHHHHHHHHhcCCeEEEEe
Q 027287 52 IDLVYGGGSVGLMGLISQAVYDGGRHVIGVI 82 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~a~gA~~aGG~viGIi 82 (225)
..++||.|. |+=.+.+..-.++|.+||.+.
T Consensus 9 ~vlvTgaga-GIG~~~v~~La~aGA~ViAva 38 (245)
T KOG1207|consen 9 IVLVTGAGA-GIGKEIVLSLAKAGAQVIAVA 38 (245)
T ss_pred EEEeecccc-cccHHHHHHHHhcCCEEEEEe
Confidence 457899995 999999999999999999984
No 357
>PRK12361 hypothetical protein; Provisional
Probab=22.46 E-value=1e+02 Score=29.94 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEecCCcccHHHHHHHHHHHHhCCCCCcEEEE
Q 027287 119 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 151 (225)
Q Consensus 119 ~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill 151 (225)
.|+.-||=||++|+...+. .++.|+.++
T Consensus 300 ~Viv~GGDGTl~ev~~~l~-----~~~~~lgii 327 (547)
T PRK12361 300 IVIACGGDGTVTEVASELV-----NTDITLGII 327 (547)
T ss_pred EEEEECCCcHHHHHHHHHh-----cCCCCEEEe
Confidence 4667899999999997773 135778776
No 358
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.45 E-value=2.5e+02 Score=21.82 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=25.7
Q ss_pred HHHHHHHH-HhCCCeEE--EcCCCccHHHHHHHHHHhcCCeEEEEe
Q 027287 40 AIELGKEL-VARNIDLV--YGGGSVGLMGLISQAVYDGGRHVIGVI 82 (225)
Q Consensus 40 A~~lG~~L-A~~G~~lv--~GGg~~GlM~a~a~gA~~aGG~viGIi 82 (225)
++++-+.. .+.|-.++ +..|+....=.+++.|++.|..||+++
T Consensus 92 ~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 92 ARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 45555551 23343333 555566777778888999999999984
No 359
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=22.45 E-value=4.2e+02 Score=24.21 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=18.0
Q ss_pred CEEEEecCCcccHHHHHHHHH
Q 027287 117 DAFIALPGGYGTLEELLEVIT 137 (225)
Q Consensus 117 Da~IvlpGG~GTL~Ei~~a~~ 137 (225)
-..|.+|--.|.|.++...+.
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~ 327 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIA 327 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHh
Confidence 467888999999999998885
No 360
>PRK07524 hypothetical protein; Provisional
Probab=22.40 E-value=4.9e+02 Score=24.93 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh-CCCeEEEcCCCccHHHHHHHHHHhcCCeEE------EEeCCccccCCCCCCCCceEeecCCHHHHHH
Q 027287 38 DAAIELGKELVA-RNIDLVYGGGSVGLMGLISQAVYDGGRHVI------GVIPKTLMPREITGETVGEVKPVADMHQRKA 110 (225)
Q Consensus 38 ~~A~~lG~~LA~-~G~~lv~GGg~~GlM~a~a~gA~~aGG~vi------GIiP~~~~~~e~~~~~~~~~~~~~~m~~Rk~ 110 (225)
+...++.+.|.+ +.-.|+.|+|-.+.-+++.+=|-..|-.|+ |++|+. |+.+.- ...-+.-..
T Consensus 189 ~~i~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~pV~tt~~~kg~~p~~-------hp~~~G---~~~~~~~~~ 258 (535)
T PRK07524 189 AALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALTINAKGLLPAG-------HPLLLG---ASQSLPAVR 258 (535)
T ss_pred HHHHHHHHHHHhCCCcEEEECCChHHHHHHHHHHHHHHCCCEEEcccccccCCCC-------Chhhcc---CCCCCHHHH
Q ss_pred HHHhhCCEEEEecCCccc
Q 027287 111 EMAKHSDAFIALPGGYGT 128 (225)
Q Consensus 111 ~mv~~sDa~IvlpGG~GT 128 (225)
.+++.||.+|+++--.+.
T Consensus 259 ~~~~~aDlvl~vG~~~~~ 276 (535)
T PRK07524 259 ALIAEADVVLAVGTELGE 276 (535)
T ss_pred HHHHhCCEEEEeCCCcCc
No 361
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=22.37 E-value=2.7e+02 Score=24.25 Aligned_cols=33 Identities=30% Similarity=0.602 Sum_probs=21.9
Q ss_pred CCEEEEecCCcccHHHHHHHHHHHHhCCCCC-cEEEEeC
Q 027287 116 SDAFIALPGGYGTLEELLEVITWAQLGIHDK-PVGLLNV 153 (225)
Q Consensus 116 sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~k-Piill~~ 153 (225)
.| +|+.-||=||+.|+...+. + ...+ |+.++..
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~--~--~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALI--Q--LDDIPALGILPL 91 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHh--c--CCCCCcEEEEcC
Confidence 45 4556899999999987762 1 1233 6776653
No 362
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=22.27 E-value=1e+02 Score=28.58 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=21.8
Q ss_pred CcceEEE-EeCCCCCC-----ChH-HHHHHHHHHHHHHhCC--CeEEEcCC
Q 027287 18 KFNRICV-FCGSSAGK-----KST-YKDAAIELGKELVARN--IDLVYGGG 59 (225)
Q Consensus 18 ~~~~V~V-fggs~~~~-----~~~-~~~~A~~lG~~LA~~G--~~lv~GGg 59 (225)
++++|.| ||||.... ++. ..+.|+++.++- +.| ..||+||+
T Consensus 7 ~~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~-~~g~~vViV~sGa 56 (372)
T PRK05429 7 DARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALR-AAGHEVVLVSSGA 56 (372)
T ss_pred hCCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHH-HCCCeEEEEcccH
Confidence 3456666 88877653 233 334444444433 445 45778763
No 363
>PRK07035 short chain dehydrogenase; Provisional
Probab=22.26 E-value=1.4e+02 Score=24.86 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=19.5
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGG 58 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 58 (225)
++|.|.|+++. ....+++.|+++|+.|+--+
T Consensus 9 k~vlItGas~g--------IG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 9 KIALVTGASRG--------IGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CEEEEECCCcH--------HHHHHHHHHHHCCCEEEEEe
Confidence 46667765542 23567777778888877444
No 364
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=22.23 E-value=3.6e+02 Score=20.52 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=22.9
Q ss_pred cccCCcceEEEEeCCCCCC------ChHHHHHHHHHHHHHHhCCCeEE---EcC
Q 027287 14 NNQSKFNRICVFCGSSAGK------KSTYKDAAIELGKELVARNIDLV---YGG 58 (225)
Q Consensus 14 ~~~~~~~~V~Vfggs~~~~------~~~~~~~A~~lG~~LA~~G~~lv---~GG 58 (225)
....+...+.||||+..-. .+.-.+-++..=+.|++.|+.|+ +||
T Consensus 34 Ga~~~~l~aklfGGa~m~~~~~~~~~~IG~rNv~~a~~~L~~~gi~I~a~dvGG 87 (114)
T PF03975_consen 34 GARPSRLEAKLFGGANMFPGMNSSSFNIGERNVEAARELLAEEGIPIVAEDVGG 87 (114)
T ss_dssp T--GGG-EEEEEE----S------SS-HHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred CCCHHHeEEEEeeCcccccccccccCCHHHHHHHHHHHHHHHCCCcEEEeeCCC
Confidence 3456667899999998643 23444555556677889999998 565
No 365
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=22.21 E-value=3e+02 Score=25.39 Aligned_cols=90 Identities=20% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCC-CceEeecC--CHHHHHHH
Q 027287 35 TYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGET-VGEVKPVA--DMHQRKAE 111 (225)
Q Consensus 35 ~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~-~~~~~~~~--~m~~Rk~~ 111 (225)
...+..+.+++..-...+.||.|+|+ +-..+++.-.+.|-.++.|-.+...-.+..... -..++..+ +...-++.
T Consensus 216 ~l~~~~~~~~~~~~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~ 293 (453)
T PRK09496 216 HIRAVMSEFGRLEKPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEE 293 (453)
T ss_pred HHHHHHHHhCccCCCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhc
Confidence 34444444554333357888999975 444566755566778877732211100110100 01233322 23344444
Q ss_pred HHhhCCEEEEecCCc
Q 027287 112 MAKHSDAFIALPGGY 126 (225)
Q Consensus 112 mv~~sDa~IvlpGG~ 126 (225)
-+..+|++|++.+.-
T Consensus 294 ~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 294 GIDEADAFIALTNDD 308 (453)
T ss_pred CCccCCEEEECCCCc
Confidence 567889999888764
No 366
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=22.19 E-value=65 Score=30.37 Aligned_cols=27 Identities=33% Similarity=0.661 Sum_probs=15.0
Q ss_pred eEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 53 DLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 53 ~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
.+|-|||+.|+|-|..- .+.|-+|+=+
T Consensus 3 viIIGgGaAGl~aA~~a--a~~g~~V~vl 29 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITA--AEKGARVLVL 29 (409)
T ss_dssp EEEE--SHHHHHHHHHH--HHTT--EEEE
T ss_pred EEEECCCHHHHHHHHHH--HhCCCCEEEE
Confidence 46779999999977654 3445444433
No 367
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=22.18 E-value=3.8e+02 Score=22.32 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=27.1
Q ss_pred HhhhcccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCC
Q 027287 10 EMEMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGG 59 (225)
Q Consensus 10 ~~~~~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg 59 (225)
++++...-+.++|-|.|+++. ....+++.|+++|+.|+..+.
T Consensus 3 ~~~~~~~~~~k~ilItGa~g~--------IG~~la~~l~~~G~~V~~~~r 44 (259)
T PRK08213 3 TVLELFDLSGKTALVTGGSRG--------LGLQIAEALGEAGARVVLSAR 44 (259)
T ss_pred cchhhhCcCCCEEEEECCCch--------HHHHHHHHHHHcCCEEEEEeC
Confidence 444544445578888876542 245677788889998775543
No 368
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.98 E-value=4.6e+02 Score=23.58 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=0.0
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCC-------------------------------------CeEEEcCCCcc
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARN-------------------------------------IDLVYGGGSVG 62 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G-------------------------------------~~lv~GGg~~G 62 (225)
++|+|+.-... +...+.+.++.++|.++| +.|+.|| .|
T Consensus 1 m~igii~~~~~---~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGG--DG 75 (292)
T PRK01911 1 MKIAIFGQTYQ---ESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGG--DG 75 (292)
T ss_pred CEEEEEeCCCC---HHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECC--cH
Q ss_pred HHHHHHHHHHhcCCeEEEE
Q 027287 63 LMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 63 lM~a~a~gA~~aGG~viGI 81 (225)
-|=-+++-+...+-.++||
T Consensus 76 T~L~aa~~~~~~~~PilGI 94 (292)
T PRK01911 76 TFLRTATYVGNSNIPILGI 94 (292)
T ss_pred HHHHHHHHhcCCCCCEEEE
No 369
>PRK15494 era GTPase Era; Provisional
Probab=21.94 E-value=6e+02 Score=23.02 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=39.7
Q ss_pred HhhCCEEEEecCCcccHHHHHHHHHHHHhCCCC-CcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEE----cCCH
Q 027287 113 AKHSDAFIALPGGYGTLEELLEVITWAQLGIHD-KPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVS----APNA 187 (225)
Q Consensus 113 v~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~-kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~----~~d~ 187 (225)
+..||++|++--..-++++....+ +..+...+ .||+++|-.+..+.....+.....+.+. ....+.+ -...
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~i-l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~---~~~i~~iSAktg~gv 204 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNI-LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHP---DSLLFPISALSGKNI 204 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHH-HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCC---CcEEEEEeccCccCH
Confidence 467998777644333333332211 12222223 4555566544433222222222222110 0122222 3468
Q ss_pred HHHHHHHHhhcCCc
Q 027287 188 KELMNKMEEYFPQH 201 (225)
Q Consensus 188 ee~~~~l~~~~~~~ 201 (225)
++++++|.+..+..
T Consensus 205 ~eL~~~L~~~l~~~ 218 (339)
T PRK15494 205 DGLLEYITSKAKIS 218 (339)
T ss_pred HHHHHHHHHhCCCC
Confidence 89999999887654
No 370
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=21.92 E-value=4.8e+02 Score=26.71 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 36 YKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 36 ~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
+...+.=+...|+..||.+++|++. ---+.+++.|.+.+..+++|
T Consensus 595 H~~ra~fv~~~l~~~GfeV~~~~~~-~s~e~~v~aa~~~~a~ivvl 639 (714)
T PRK09426 595 HDRGAKVIATAFADLGFDVDIGPLF-QTPEEAARQAVENDVHVVGV 639 (714)
T ss_pred hhHhHHHHHHHHHhCCeeEecCCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 5555666778888899999988764 55678889999999999998
No 371
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=21.90 E-value=1.7e+02 Score=26.00 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=34.8
Q ss_pred CChHHHHHHHHHHHHHHhCCC---eEEEc-CCCccHHHHHHHHHHhcCC
Q 027287 32 KKSTYKDAAIELGKELVARNI---DLVYG-GGSVGLMGLISQAVYDGGR 76 (225)
Q Consensus 32 ~~~~~~~~A~~lG~~LA~~G~---~lv~G-Gg~~GlM~a~a~gA~~aGG 76 (225)
..+.+...-..+++.|++.|+ .+|+| ||+.-+|+.+++......+
T Consensus 84 ~~~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 84 SPETLIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred cHHHHHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 456788888999999999988 34444 4567889999998887655
No 372
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=21.89 E-value=3.1e+02 Score=24.13 Aligned_cols=9 Identities=11% Similarity=0.006 Sum_probs=4.0
Q ss_pred CCEEEEecC
Q 027287 116 SDAFIALPG 124 (225)
Q Consensus 116 sDa~IvlpG 124 (225)
.|++|||++
T Consensus 45 ~d~ivVLGa 53 (239)
T PRK10834 45 RQVGVVLGT 53 (239)
T ss_pred CCEEEEcCC
Confidence 344444443
No 373
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=21.87 E-value=4.1e+02 Score=21.12 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=52.2
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEE-eCCccccCCCCCCC
Q 027287 17 SKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGV-IPKTLMPREITGET 95 (225)
Q Consensus 17 ~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGI-iP~~~~~~e~~~~~ 95 (225)
-+-++|+|+|-|.. ..+.|+..|.++|.++..=--..- .+.+...++.-.+..+ .| .+.+.+.-.+.
T Consensus 26 ~~gk~v~VvGrs~~--------vG~pla~lL~~~gatV~~~~~~t~---~l~~~v~~ADIVvsAtg~~-~~i~~~~ikpG 93 (140)
T cd05212 26 LDGKKVLVVGRSGI--------VGAPLQCLLQRDGATVYSCDWKTI---QLQSKVHDADVVVVGSPKP-EKVPTEWIKPG 93 (140)
T ss_pred CCCCEEEEECCCch--------HHHHHHHHHHHCCCEEEEeCCCCc---CHHHHHhhCCEEEEecCCC-CccCHHHcCCC
Confidence 45578999964332 346788888889998865543211 1222333444333333 12 11222221221
Q ss_pred CceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHH
Q 027287 96 VGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELL 133 (225)
Q Consensus 96 ~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~ 133 (225)
..-+-+..++ +.-....+.+.++.=.|||.|-+.=..
T Consensus 94 a~Vidvg~~~-~~~~~~~~~a~~~tPvpgGVGp~T~a~ 130 (140)
T cd05212 94 ATVINCSPTK-LSGDDVKESASLYVPMTGGVGKLTVAM 130 (140)
T ss_pred CEEEEcCCCc-ccchhhHhhceEEcCCCCCchHHHHHH
Confidence 1111111111 112345566889999999999876444
No 374
>PRK07116 flavodoxin; Provisional
Probab=21.78 E-value=4.1e+02 Score=21.05 Aligned_cols=80 Identities=10% Similarity=0.170 Sum_probs=44.3
Q ss_pred HhhCCE-EEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCc--hHHHHHHHHHHHcC-CCCccccCcEEEcCCHH
Q 027287 113 AKHSDA-FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY--NSLLTFIDKAVEEG-FISPNARHIIVSAPNAK 188 (225)
Q Consensus 113 v~~sDa-~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w--~~l~~~l~~~~~~g-fi~~~~~~~i~~~~d~e 188 (225)
+...|. +|+.|=-.|++......+ +.++...+||++++.+.|.. ......++++.... +.+ ...+.-..+.+
T Consensus 74 l~~~D~Iiig~Pv~~~~~p~~v~~f-l~~~~l~~k~v~~f~T~g~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 149 (160)
T PRK07116 74 IAEYDVIFLGFPIWWYVAPRIINTF-LESYDFSGKTVIPFATSGGSGIGNAEKELKKSYPDANWKE---GRLLNGGASKE 149 (160)
T ss_pred HHhCCEEEEECChhccccHHHHHHH-HHhcCCCCCEEEEEEeCCCCCcCcHHHHHHHHCCcCcccc---CeeecCCCcHH
Confidence 455775 444555568887776665 34555668999998775433 35556666654221 111 11111113455
Q ss_pred HHHHHHHh
Q 027287 189 ELMNKMEE 196 (225)
Q Consensus 189 e~~~~l~~ 196 (225)
++-++|++
T Consensus 150 ~i~~wl~~ 157 (160)
T PRK07116 150 EIKEWINK 157 (160)
T ss_pred HHHHHHHH
Confidence 67777665
No 375
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=21.78 E-value=6e+02 Score=24.64 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=21.7
Q ss_pred EEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEe
Q 027287 119 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 152 (225)
Q Consensus 119 ~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~ 152 (225)
+|++.||=||+.|+..-+- .-....-|+-++-
T Consensus 119 ii~VaGGDGT~~eVVTGi~--Rrr~~~~pv~~~P 150 (535)
T KOG4435|consen 119 IIYVAGGDGTIGEVVTGIF--RRRKAQLPVGFYP 150 (535)
T ss_pred eEEEecCCCcHHHhhHHHH--hcccccCceeecc
Confidence 5677899999999975552 1112346888874
No 376
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=21.66 E-value=2.8e+02 Score=23.19 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=38.2
Q ss_pred CCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHH
Q 027287 116 SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKM 194 (225)
Q Consensus 116 sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l 194 (225)
.+++|+.+||+=.-+|-...+. ....+|.|+.+ +..+++++- .+....+....++.+.++.|
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l~------~~g~vv~L~~~-----~e~l~~Rl~------~~~~RPll~~~~~~~~l~~L 133 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLLK------KRGIVVYLDAP-----FETLYERLQ------RDRKRPLLQTEDPREELEEL 133 (172)
T ss_pred CCeEEECCCccccCHHHHHHHH------hCCeEEEEeCC-----HHHHHHHhc------cccCCCcccCCChHHHHHHH
Confidence 3699999999999999887772 23367777754 333333332 23344566677774433333
No 377
>PLN02448 UDP-glycosyltransferase family protein
Probab=21.60 E-value=6.7e+02 Score=23.72 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=40.0
Q ss_pred HHhhCCE-EEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHc---CCCCccccCcEEEcCCH
Q 027287 112 MAKHSDA-FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEE---GFISPNARHIIVSAPNA 187 (225)
Q Consensus 112 mv~~sDa-~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~---gfi~~~~~~~i~~~~d~ 187 (225)
++.+.++ ..+-.||.||..|.. .+++|++.+-. +.|+... .+.+++. |.-=....+.- -.-+.
T Consensus 336 iL~h~~v~~fvtHgG~nS~~eal---------~~GvP~l~~P~--~~DQ~~n-a~~v~~~~g~G~~~~~~~~~~-~~~~~ 402 (459)
T PLN02448 336 VLCHSSVGGFWTHCGWNSTLEAV---------FAGVPMLTFPL--FWDQPLN-SKLIVEDWKIGWRVKREVGEE-TLVGR 402 (459)
T ss_pred HhccCccceEEecCchhHHHHHH---------HcCCCEEeccc--cccchhh-HHHHHHHhCceEEEecccccC-CcCcH
Confidence 4456664 677789999988765 26899998742 4444433 2334332 31100000000 01256
Q ss_pred HHHHHHHHhhcC
Q 027287 188 KELMNKMEEYFP 199 (225)
Q Consensus 188 ee~~~~l~~~~~ 199 (225)
+++.+.+++...
T Consensus 403 ~~l~~av~~vl~ 414 (459)
T PLN02448 403 EEIAELVKRFMD 414 (459)
T ss_pred HHHHHHHHHHhc
Confidence 677666666553
No 378
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=21.55 E-value=1.3e+02 Score=25.61 Aligned_cols=123 Identities=23% Similarity=0.268 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCeEE-EcCCCccHHHHHHHHHHhcCCeEEEEeCCc--c--ccCCCCCCCCceEeecCCHHHHHHHHHh
Q 027287 40 AIELGKELVARNIDLV-YGGGSVGLMGLISQAVYDGGRHVIGVIPKT--L--MPREITGETVGEVKPVADMHQRKAEMAK 114 (225)
Q Consensus 40 A~~lG~~LA~~G~~lv-~GGg~~GlM~a~a~gA~~aGG~viGIiP~~--~--~~~e~~~~~~~~~~~~~~m~~Rk~~mv~ 114 (225)
|-.|+++=-+.|-.++ -|.|. |-+..-.- ..--.+++++|--+. . ..+....-.+..+.+..+-. -..+-.
T Consensus 24 al~ls~L~~~~g~~l~DIGaGt-Gsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~~ 99 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGT-GSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALPD 99 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCc-cHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhcC
Confidence 4455555445666666 67775 66543322 334578999992111 0 01111111233333322211 112223
Q ss_pred h--CCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCC
Q 027287 115 H--SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGF 172 (225)
Q Consensus 115 ~--sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gf 172 (225)
. .|+ |+++|| |+++++++++ |..+.. ---++.|.- --+.+...++.+-+.|+
T Consensus 100 ~~~~da-iFIGGg-~~i~~ile~~-~~~l~~--ggrlV~nai-tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 100 LPSPDA-IFIGGG-GNIEEILEAA-WERLKP--GGRLVANAI-TLETLAKALEALEQLGG 153 (187)
T ss_pred CCCCCE-EEECCC-CCHHHHHHHH-HHHcCc--CCeEEEEee-cHHHHHHHHHHHHHcCC
Confidence 3 344 455666 9999999887 444321 113455532 11223333344445554
No 379
>PLN02562 UDP-glycosyltransferase
Probab=21.55 E-value=7e+02 Score=23.63 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=26.2
Q ss_pred HHhhCC-EEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHH
Q 027287 112 MAKHSD-AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL 161 (225)
Q Consensus 112 mv~~sD-a~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~ 161 (225)
++.+.+ +..+=-||+||..|.. .+++|++.+- -|.|+..
T Consensus 341 iL~h~~v~~fvtH~G~nS~~Eal---------~~GvP~l~~P--~~~DQ~~ 380 (448)
T PLN02562 341 VLKHQAVGCYLTHCGWNSTMEAI---------QCQKRLLCYP--VAGDQFV 380 (448)
T ss_pred HhCCCccceEEecCcchhHHHHH---------HcCCCEEeCC--cccchHH
Confidence 445555 3677789999988875 2689999863 2445443
No 380
>PRK06180 short chain dehydrogenase; Provisional
Probab=21.42 E-value=1.5e+02 Score=25.42 Aligned_cols=33 Identities=15% Similarity=-0.025 Sum_probs=22.1
Q ss_pred cceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCC
Q 027287 19 FNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGG 59 (225)
Q Consensus 19 ~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg 59 (225)
.++|.|.|+++. ..+.+.+.|+++|+.|+..+-
T Consensus 4 ~~~vlVtGasgg--------iG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLITGVSSG--------FGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CCEEEEecCCCh--------HHHHHHHHHHhCcCEEEEEeC
Confidence 356888876552 245677777888998776543
No 381
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.35 E-value=4.9e+02 Score=23.34 Aligned_cols=63 Identities=25% Similarity=0.392 Sum_probs=34.3
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchH-----HHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 027287 124 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS-----LLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEE 196 (225)
Q Consensus 124 GG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~-----l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 196 (225)
+|+ |++..++.+.-..-.-.+.|++|+. ||++ +..|++.+.+.|. +-+++.|=|-|--+.+..
T Consensus 74 ~g~-t~~~~lel~~~~r~~~~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~Gv------dGlivpDLP~ee~~~~~~ 141 (265)
T COG0159 74 AGV-TLEDTLELVEEIRAKGVKVPIVLMT---YYNPIFNYGIEKFLRRAKEAGV------DGLLVPDLPPEESDELLK 141 (265)
T ss_pred CCC-CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHHHhhHHHHHHHHHHcCC------CEEEeCCCChHHHHHHHH
Confidence 344 4555555553222122467999984 5554 5666777766653 335555555544444433
No 382
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.34 E-value=1.5e+02 Score=28.62 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEE
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVARNIDLV 55 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv 55 (225)
.|+|.||....-.+.. -.||.|+..||+.+
T Consensus 268 ~V~Ilcgpgnnggdg~-----v~gRHL~~~G~~~v 297 (453)
T KOG2585|consen 268 LVAILCGPGNNGGDGL-----VCGRHLAQHGYTPV 297 (453)
T ss_pred eEEEEeCCCCccchhH-----HHHHHHHHcCceeE
Confidence 3999998876433322 28999999997655
No 383
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=21.25 E-value=3.6e+02 Score=25.27 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=21.4
Q ss_pred CeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCC
Q 027287 52 IDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPK 84 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~ 84 (225)
-.+|+||.. -|-+++.+.........|+|+.+
T Consensus 53 ~DvVFGGee-KL~eaI~ea~e~y~P~lI~VvTT 84 (352)
T TIGR03282 53 NDFVFGASE-KLVKVIRYAEEKFKPELIGVVGT 84 (352)
T ss_pred CceEeCcHH-HHHHHHHHHHHhcCCCEEEEECC
Confidence 456778764 77777766665567777777544
No 384
>PRK12686 carbamate kinase; Reviewed
Probab=21.25 E-value=1.5e+02 Score=27.06 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=22.3
Q ss_pred eEEE-EeCCCCCC----ChHHHHHHHHHHHHHHh---CCCeEE--EcCCC
Q 027287 21 RICV-FCGSSAGK----KSTYKDAAIELGKELVA---RNIDLV--YGGGS 60 (225)
Q Consensus 21 ~V~V-fggs~~~~----~~~~~~~A~~lG~~LA~---~G~~lv--~GGg~ 60 (225)
+|.| +||+.... .+...+.+++.++.||. .||.+| .|+||
T Consensus 4 ~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGP 53 (312)
T PRK12686 4 KIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGP 53 (312)
T ss_pred EEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 4444 77776543 23333445555555553 466554 78887
No 385
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=21.21 E-value=58 Score=30.84 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCC----------ccHHHHHHHHHHhcCCeEEEE--eCCc
Q 027287 38 DAAIELGKELVARNIDLVYGGGS----------VGLMGLISQAVYDGGRHVIGV--IPKT 85 (225)
Q Consensus 38 ~~A~~lG~~LA~~G~~lv~GGg~----------~GlM~a~a~gA~~aGG~viGI--iP~~ 85 (225)
+-|+.|++.|.++|+.|++||-. .|+-+..+..+++.-|.++-- +|..
T Consensus 307 ~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d 366 (399)
T PF00464_consen 307 KNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGD 366 (399)
T ss_dssp HHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTT
T ss_pred HHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCC
Confidence 45677888888899999987621 356666677777777766542 5644
No 386
>PRK04155 chaperone protein HchA; Provisional
Probab=21.20 E-value=93 Score=27.98 Aligned_cols=36 Identities=36% Similarity=0.324 Sum_probs=21.7
Q ss_pred CC-EEEEecCCcccHHHHHHHHHHHHh----CCCCCcEEEE
Q 027287 116 SD-AFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLL 151 (225)
Q Consensus 116 sD-a~IvlpGG~GTL~Ei~~a~~~~ql----g~~~kPiill 151 (225)
+| ..|++|||.|.+..+.+.-.+.++ ..++|||..+
T Consensus 146 ~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAI 186 (287)
T PRK04155 146 SDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITL 186 (287)
T ss_pred ccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEE
Confidence 44 577899999987765432222221 1357888765
No 387
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.16 E-value=4.9e+02 Score=23.82 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=11.6
Q ss_pred HhhCCEEEEecCCc
Q 027287 113 AKHSDAFIALPGGY 126 (225)
Q Consensus 113 v~~sDa~IvlpGG~ 126 (225)
...+|++|+++||.
T Consensus 81 ~~~~d~IIaiGGGS 94 (374)
T cd08189 81 ENGCDAILAVGGGS 94 (374)
T ss_pred hcCCCEEEEeCCcc
Confidence 35689999999985
No 388
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=21.12 E-value=91 Score=28.50 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=19.4
Q ss_pred eEEEcCCCccHHHHHHHHHHhcCCeEEEEe
Q 027287 53 DLVYGGGSVGLMGLISQAVYDGGRHVIGVI 82 (225)
Q Consensus 53 ~lv~GGg~~GlM~a~a~gA~~aGG~viGIi 82 (225)
.||-|||..|++-|+ .|.++|.+|+-|-
T Consensus 2 VvVIG~G~AGl~AA~--~Aae~G~~V~lve 29 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAI--EAAEAGAKVLLVE 29 (417)
T ss_dssp EEEE-SSHHHHHHHH--HHHHTTT-EEEEE
T ss_pred EEEECCCHHHHHHHH--HHhhhcCeEEEEE
Confidence 467799887887554 5778899998884
No 389
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=21.08 E-value=4.4e+02 Score=24.00 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.9
Q ss_pred hhCCEEEEecCCc
Q 027287 114 KHSDAFIALPGGY 126 (225)
Q Consensus 114 ~~sDa~IvlpGG~ 126 (225)
..+|++|+++||.
T Consensus 82 ~~~D~IIavGGGS 94 (357)
T cd08181 82 FNADFVIGIGGGS 94 (357)
T ss_pred cCCCEEEEeCCch
Confidence 4679999999985
No 390
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=21.05 E-value=2.3e+02 Score=26.02 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=11.1
Q ss_pred hhCCEEEEecCCc
Q 027287 114 KHSDAFIALPGGY 126 (225)
Q Consensus 114 ~~sDa~IvlpGG~ 126 (225)
..+|++|+++||.
T Consensus 82 ~~~D~IIaiGGGs 94 (376)
T cd08193 82 AGADGVIGFGGGS 94 (376)
T ss_pred cCCCEEEEeCCch
Confidence 4789999999985
No 391
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=20.93 E-value=5.1e+02 Score=23.90 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHh-----CCCeEEE--cCCC-ccHHHHHHHHHHhc----CCeEEEEeCCcc
Q 027287 34 STYKDAAIELGKELVA-----RNIDLVY--GGGS-VGLMGLISQAVYDG----GRHVIGVIPKTL 86 (225)
Q Consensus 34 ~~~~~~A~~lG~~LA~-----~G~~lv~--GGg~-~GlM~a~a~gA~~a----GG~viGIiP~~~ 86 (225)
+.+.+...+.-|..++ .|+.++. |||. .|+--.+.+-+.+. .-.+++|.|...
T Consensus 69 ~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~ 133 (382)
T cd06059 69 PELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQ 133 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCc
Confidence 3445555555555555 4778875 4443 36666666666654 234566788643
No 392
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=20.88 E-value=2.4e+02 Score=24.07 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=19.6
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHhCCC--eEEEcCC
Q 027287 25 FCGSSAGKKSTYKDAAIELGKELVARNI--DLVYGGG 59 (225)
Q Consensus 25 fggs~~~~~~~~~~~A~~lG~~LA~~G~--~lv~GGg 59 (225)
||||...+.+...+.++++.++. +.|+ .||.|||
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~viV~sg~ 41 (239)
T cd04246 6 FGGTSVADIERIKRVAERIKKAV-KKGYQVVVVVSAM 41 (239)
T ss_pred ECccccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCC
Confidence 88887764445555666665543 3444 4666754
No 393
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=20.88 E-value=3.8e+02 Score=20.36 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=60.8
Q ss_pred HHHHHHHhCCCeEE-EcCCCc--cHHHHHHHHHHhcCCeEEEEeCCc--cccCCCCCCCCceEeecCCHHHHHHHHHhhC
Q 027287 42 ELGKELVARNIDLV-YGGGSV--GLMGLISQAVYDGGRHVIGVIPKT--LMPREITGETVGEVKPVADMHQRKAEMAKHS 116 (225)
Q Consensus 42 ~lG~~LA~~G~~lv-~GGg~~--GlM~a~a~gA~~aGG~viGIiP~~--~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~s 116 (225)
++.+.|.+....++ .|.|-. |.-+++.+=|-..|-.++-- |.. ..+. .++.+.-..-...-...+..+ +.|
T Consensus 3 ~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t-~~~kg~i~~--~hp~~~G~~g~~~~~~~~~~l-~~a 78 (137)
T PF00205_consen 3 EAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATT-PMGKGVIPE--DHPLFLGYLGLFGSPAANEAL-EQA 78 (137)
T ss_dssp HHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEE-GGGTTSSTT--TSTTEEEESCGGSCHHHHHHH-HHS
T ss_pred HHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEec-CccccccCC--CCchhcccCCccCCHHHHHHh-cCC
Confidence 45666666544444 444322 44455555555556665322 211 1111 122221111011124445544 999
Q ss_pred CEEEEecCCcccHHHHHHHHHHHHhCCC-CCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHH
Q 027287 117 DAFIALPGGYGTLEELLEVITWAQLGIH-DKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKM 194 (225)
Q Consensus 117 Da~IvlpGG~GTL~Ei~~a~~~~qlg~~-~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l 194 (225)
|.+|+++-......-.. . ..... +.++|-++.+. + -+.....-.+.++.|++++++.|
T Consensus 79 Dlvl~iG~~~~~~~~~~---~--~~~~~~~~~~I~I~~d~-~--------------~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 79 DLVLAIGTRLSDFNTYG---F--SPAFNPDAKIIQIDPDP-A--------------EIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp SEEEEESSSSSTTTTTT---T--TGCSTTTSEEEEEESSG-G--------------GTTSSSEESEEEESHHHHHHHHH
T ss_pred CEEEEECCCCccccccc---c--ccccCCCCEEEEEECCH-H--------------HhCCCCCCCEEEEECHHHHhhCC
Confidence 99999987654422111 0 00112 23788887652 0 11222223377788888887765
No 394
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=20.74 E-value=2.6e+02 Score=18.80 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCCCeEEEcC
Q 027287 38 DAAIELGKELVARNIDLVYGG 58 (225)
Q Consensus 38 ~~A~~lG~~LA~~G~~lv~GG 58 (225)
..+..+++.|++.|+.++.-.
T Consensus 14 t~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 14 TLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred HHHHHHHHHHHHCCCeEEEEC
Confidence 357788999998888777554
No 395
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=20.68 E-value=1.5e+02 Score=26.09 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=20.6
Q ss_pred cceEEE-EeCCCCCC------ChHHHHHHHHHHHHHHhCCCe--EE-EcCC
Q 027287 19 FNRICV-FCGSSAGK------KSTYKDAAIELGKELVARNID--LV-YGGG 59 (225)
Q Consensus 19 ~~~V~V-fggs~~~~------~~~~~~~A~~lG~~LA~~G~~--lv-~GGg 59 (225)
++.|.| ||||.... .+...+.|+++.++. ++|+. || +|++
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~-~~g~~vvlV~Sga~ 58 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLM-NKGKEVILVSSGAI 58 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHH-HCCCeEEEEeeCcc
Confidence 455666 98888762 223334444444333 45643 43 6644
No 396
>PRK08339 short chain dehydrogenase; Provisional
Probab=20.68 E-value=1.6e+02 Score=25.04 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=18.9
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGG 58 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 58 (225)
+++-|.|+++ + ..+.+++.|+++|+.|+.-+
T Consensus 9 k~~lItGas~-g-------IG~aia~~l~~~G~~V~~~~ 39 (263)
T PRK08339 9 KLAFTTASSK-G-------IGFGVARVLARAGADVILLS 39 (263)
T ss_pred CEEEEeCCCC-c-------HHHHHHHHHHHCCCEEEEEe
Confidence 3556665544 2 23457777888888876543
No 397
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=20.65 E-value=4e+02 Score=22.11 Aligned_cols=86 Identities=26% Similarity=0.296 Sum_probs=43.3
Q ss_pred HHhhCCEEEEecCCcccHHHHHHHHHHHH-hCCCCCcEEEEeCCCCc------hHHHHHHHH-HHHcCCCCccccCcEE-
Q 027287 112 MAKHSDAFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLLNVDGYY------NSLLTFIDK-AVEEGFISPNARHIIV- 182 (225)
Q Consensus 112 mv~~sDa~IvlpGG~GTL~Ei~~a~~~~q-lg~~~kPiill~~~g~w------~~l~~~l~~-~~~~gfi~~~~~~~i~- 182 (225)
+.+...+.|+|+||. |...+++.+.-.. .++--+.|.+++.+.+| +.-..+++. +.+..-|++.....+.
T Consensus 17 i~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~ 95 (199)
T PF01182_consen 17 IAERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPENIHPIDG 95 (199)
T ss_dssp HHHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGGGEETSST
T ss_pred HHHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcceEEeCCC
Confidence 346678999999996 4446666664332 12223667777777666 222333332 3332223322222222
Q ss_pred EcCCHHHHHHHHHhhc
Q 027287 183 SAPNAKELMNKMEEYF 198 (225)
Q Consensus 183 ~~~d~ee~~~~l~~~~ 198 (225)
-.+|+++..+..++..
T Consensus 96 ~~~~~~~~~~~y~~~l 111 (199)
T PF01182_consen 96 EADDPEEAAERYEQEL 111 (199)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 1456777777666543
No 398
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=20.61 E-value=6e+02 Score=23.32 Aligned_cols=71 Identities=13% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCEEEEe---cCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEE
Q 027287 106 HQRKAEMAKHSDAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIV 182 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~Ivl---pGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~ 182 (225)
.+....++..||++|.+ .-|.|--.-+.|+++ .++|||..+.. -..+++. +.....++
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama------~G~PVI~s~~~-~~~eiv~------------~~~~G~lv 365 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCALDFK-CIDELVK------------HGENGLVF 365 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHH------cCCCEEEeCCC-CHHHHhc------------CCCCEEEE
Q ss_pred EcCCHHHHHHHHHhh
Q 027287 183 SAPNAKELMNKMEEY 197 (225)
Q Consensus 183 ~~~d~ee~~~~l~~~ 197 (225)
+|++++.+.|.+.
T Consensus 366 --~d~~~la~~i~~l 378 (415)
T cd03816 366 --GDSEELAEQLIDL 378 (415)
T ss_pred --CCHHHHHHHHHHH
No 399
>PRK12367 short chain dehydrogenase; Provisional
Probab=20.60 E-value=1.6e+02 Score=25.23 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=14.9
Q ss_pred CeEEEcCCCccHHHHHHHHHHhcCCeEEEE
Q 027287 52 IDLVYGGGSVGLMGLISQAVYDGGRHVIGV 81 (225)
Q Consensus 52 ~~lv~GGg~~GlM~a~a~gA~~aGG~viGI 81 (225)
..|||||+. |+=.++++...+.|..|+.+
T Consensus 16 ~~lITGas~-gIG~ala~~l~~~G~~Vi~~ 44 (245)
T PRK12367 16 RIGITGASG-ALGKALTKAFRAKGAKVIGL 44 (245)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHCCCEEEEE
Confidence 345555542 55555555555555555444
No 400
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=20.48 E-value=2e+02 Score=25.83 Aligned_cols=42 Identities=36% Similarity=0.326 Sum_probs=28.7
Q ss_pred HHHHHHHh----CCCeEEEcCCCccHHHHHHHHHHhcCC--eEEEEeCC
Q 027287 42 ELGKELVA----RNIDLVYGGGSVGLMGLISQAVYDGGR--HVIGVIPK 84 (225)
Q Consensus 42 ~lG~~LA~----~G~~lv~GGg~~GlM~a~a~gA~~aGG--~viGIiP~ 84 (225)
.+|.+|.+ ..+.++..|+ +|+...++++..+.+. +++||-|.
T Consensus 156 t~a~Ei~~q~~~~d~vvv~~G~-Gg~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 156 TLGLEVVEQMPDLATVLVPLSG-GGLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred HHHHHHHHhCCCCCEEEEEcCh-hHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 35555544 2345555544 6999999999988654 78999775
No 401
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.41 E-value=6.4e+02 Score=22.71 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCC
Q 027287 106 HQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGI 143 (225)
Q Consensus 106 ~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~ 143 (225)
.+|.+.+.+..|.-+||-||+|+-+|-+... .+.|.
T Consensus 188 ~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~a--i~~Gi 223 (283)
T PRK07998 188 IPLLKRIAEVSPVPLVIHGGSGIPPEILRSF--VNYKV 223 (283)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCCHHHHHHH--HHcCC
Confidence 5788888888899999999999998877443 35553
No 402
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=20.40 E-value=1.4e+02 Score=27.19 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=22.9
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHh
Q 027287 21 RICVFCGSSAGKKSTYKDAAIELGKELVA 49 (225)
Q Consensus 21 ~V~Vfggs~~~~~~~~~~~A~~lG~~LA~ 49 (225)
+|+|||||=++..-.+...|++..+.+.-
T Consensus 2 ~i~i~gGsFdP~H~GHl~la~~a~~~~~~ 30 (342)
T PRK07152 2 KIAIFGGSFDPIHKGHINIAKKAIKKLKL 30 (342)
T ss_pred eEEEEeeCCCCcCHHHHHHHHHHHHHhCC
Confidence 69999999988887888778777666543
No 403
>PRK08177 short chain dehydrogenase; Provisional
Probab=20.39 E-value=1.6e+02 Score=24.16 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=19.6
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcC
Q 027287 20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGG 58 (225)
Q Consensus 20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GG 58 (225)
++|.|.|+++. ....+++.|+++|+.|+.-+
T Consensus 2 k~vlItG~sg~--------iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 2 RTALIIGASRG--------LGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHhCCCEEEEEe
Confidence 46777765542 24557777777888877443
No 404
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=20.37 E-value=6.7e+02 Score=24.16 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=42.2
Q ss_pred HHHHHHHHHHh-CCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCc--cccCCCCCCCCceEeecCCHHHHHHHHHhh
Q 027287 39 AAIELGKELVA-RNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKT--LMPREITGETVGEVKPVADMHQRKAEMAKH 115 (225)
Q Consensus 39 ~A~~lG~~LA~-~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~--~~~~e~~~~~~~~~~~~~~m~~Rk~~mv~~ 115 (225)
...++.++|.+ +--.|+.|+|-.+..+++.+=|-..|-.|+-- +.. ..+. .|+.+.-.+-...-...+. .++.
T Consensus 184 ~i~~~~~~L~~AkrPvii~G~g~~~a~~~l~~lAe~~~~PV~tt-~~gkg~~~~--~hp~~~G~~g~~~~~~~~~-~l~~ 259 (549)
T PRK06457 184 DFSRAKELIKESEKPVLLIGGGTRGLGKEINRFAEKIGAPIIYT-LNGKGILPD--LDPKVMGGIGLLGTKPSIE-AMDK 259 (549)
T ss_pred HHHHHHHHHHcCCCcEEEECcchhhHHHHHHHHHHHHCCCEEEc-ccccccCCC--CChhhccCCCCCCCHHHHH-HHHh
Confidence 34556667764 34555567654455566655555667766521 111 0111 1111111110111123334 4478
Q ss_pred CCEEEEecCCcc
Q 027287 116 SDAFIALPGGYG 127 (225)
Q Consensus 116 sDa~IvlpGG~G 127 (225)
||.+|+++...+
T Consensus 260 aDlvl~lG~~~~ 271 (549)
T PRK06457 260 ADLLIMLGTSFP 271 (549)
T ss_pred CCEEEEECCCCC
Confidence 999999998765
No 405
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=20.37 E-value=2.6e+02 Score=21.73 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCe
Q 027287 34 STYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRH 77 (225)
Q Consensus 34 ~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~ 77 (225)
+...+.|..+.+.+.+.|-..++|-|. ---.+..-+.+.++.
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~--S~~~a~~~~~~~~~~ 60 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGH--SAAIASHFAADLGGL 60 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTH--HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCch--hhhHHHHHHHHHhcC
Confidence 456677888888887888888888764 333355556666654
No 406
>PLN02740 Alcohol dehydrogenase-like
Probab=20.18 E-value=2.8e+02 Score=25.17 Aligned_cols=83 Identities=22% Similarity=0.247 Sum_probs=41.3
Q ss_pred CCeEEEcCCCccHHHHHHHHHHhcCC-eEEEEeCCccccCCCCC-CCCceEeecC----CHHHHHHHHHh-hCCEEEEec
Q 027287 51 NIDLVYGGGSVGLMGLISQAVYDGGR-HVIGVIPKTLMPREITG-ETVGEVKPVA----DMHQRKAEMAK-HSDAFIALP 123 (225)
Q Consensus 51 G~~lv~GGg~~GlM~a~a~gA~~aGG-~viGIiP~~~~~~e~~~-~~~~~~~~~~----~m~~Rk~~mv~-~sDa~Ivlp 123 (225)
...+|+|+|+.|++ +..-|...|. +|+++...... .+... -..+.++... ++.++-..+.. ..|++|=..
T Consensus 200 ~~VlV~G~G~vG~~--a~q~ak~~G~~~Vi~~~~~~~r-~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 200 SSVAIFGLGAVGLA--VAEGARARGASKIIGVDINPEK-FEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCCcEEEEcCChHH-HHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 46777887654544 4556777787 58887432210 11100 0112222211 13322222222 367777777
Q ss_pred CCcccHHHHHHHH
Q 027287 124 GGYGTLEELLEVI 136 (225)
Q Consensus 124 GG~GTL~Ei~~a~ 136 (225)
|+..++.+.+..+
T Consensus 277 G~~~~~~~a~~~~ 289 (381)
T PLN02740 277 GNVEVLREAFLST 289 (381)
T ss_pred CChHHHHHHHHhh
Confidence 7777777666544
No 407
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=20.15 E-value=6.9e+02 Score=23.02 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=35.2
Q ss_pred hhCCEEEEecC--CcccHHHHHHHHHHHH-hCCCCCcEEEEeCCCCchHHHHHHHH-HHHcCC
Q 027287 114 KHSDAFIALPG--GYGTLEELLEVITWAQ-LGIHDKPVGLLNVDGYYNSLLTFIDK-AVEEGF 172 (225)
Q Consensus 114 ~~sDa~IvlpG--G~GTL~Ei~~a~~~~q-lg~~~kPiill~~~g~w~~l~~~l~~-~~~~gf 172 (225)
..||++|+-.- +.|-+.++...+.... +...+|++.+++.-|+...-...+.. +...|+
T Consensus 299 ~~~d~ii~GspT~~~~~~~~~~~~l~~l~~~~~~~K~~a~FGsygw~g~a~~~~~~~l~~~g~ 361 (394)
T PRK11921 299 FKSKAILVGSSTINRGILSSTAAILEEIKGLGFKNKKAAAFGSYGWSGESVKIITERLKKAGF 361 (394)
T ss_pred HhCCEEEEECCCcCccccHHHHHHHHHhhccCcCCCEEEEEecCCCccHHHHHHHHHHHHCCC
Confidence 35898776543 3455566655554332 23468999999886665555555543 444454
No 408
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.15 E-value=2.5e+02 Score=25.52 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=28.8
Q ss_pred CCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEc
Q 027287 17 SKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYG 57 (225)
Q Consensus 17 ~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~G 57 (225)
.++++|+|+. +.. .+...+.+.++.++|.++|+.++.-
T Consensus 3 ~~~~~I~iv~--~~~-~~~~~~~~~~l~~~L~~~g~~v~~~ 40 (306)
T PRK03372 3 TASRRVLLVA--HTG-RDEATEAARRVAKQLGDAGIGVRVL 40 (306)
T ss_pred CCccEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4567899994 322 3556678999999999999998865
No 409
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=20.13 E-value=2.2e+02 Score=27.22 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred hHHHHHhhhcccC--CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhc-CCeEEE
Q 027287 5 MEMEMEMEMNNQS--KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDG-GRHVIG 80 (225)
Q Consensus 5 ~~~~~~~~~~~~~--~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~a-GG~viG 80 (225)
||-|...+..... +.+.|+|.|||.. ++.. .+-+.|.+.=-.|+.||+ ++...+.+ +|..||
T Consensus 190 mekEl~~L~~~~~~p~rP~vaIlGGaKv--sdKi-----~vl~~Ll~k~D~iligG~-------ma~tFL~A~~G~~iG 254 (417)
T PTZ00005 190 MKKELDYFSKALENPQRPFLAILGGAKV--ADKI-----QLIKNLLDKVDEMIIGGG-------MAFTFKKVLDNMPIG 254 (417)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEcCccH--HhHH-----HHHHHHHHhcCEEEECcH-------HHHHHHHHhCCCccC
No 410
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=20.13 E-value=3e+02 Score=22.10 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=31.6
Q ss_pred cccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCC--C-eEEEcCCCccHHHHHHH
Q 027287 14 NNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARN--I-DLVYGGGSVGLMGLISQ 69 (225)
Q Consensus 14 ~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G--~-~lv~GGg~~GlM~a~a~ 69 (225)
..+.+-..|.=+|..... ...|.+.|.++++.+++.. + .+++|-| .|.+=++++
T Consensus 20 ~L~~~g~eV~D~G~~~~~-~~dy~~~a~~va~~V~~~~~d~GIliCgtG-iG~~iaANK 76 (140)
T PF02502_consen 20 YLEEKGYEVIDFGTYSED-SVDYPDFAEKVAEAVASGEADRGILICGTG-IGMSIAANK 76 (140)
T ss_dssp HHHHTTEEEEEESESSTS-T--HHHHHHHHHHHHHTTSSSEEEEEESSS-HHHHHHHHT
T ss_pred HHHHCCCEEEEeCCCCCC-CCCHHHHHHHHHHHHHcccCCeEEEEcCCC-hhhhhHhhc
Confidence 333444456666544433 5679999999999999743 2 2345666 476644443
No 411
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=20.08 E-value=2.5e+02 Score=25.86 Aligned_cols=18 Identities=6% Similarity=0.301 Sum_probs=13.3
Q ss_pred EEEcCCHHHHHHHHHhhc
Q 027287 181 IVSAPNAKELMNKMEEYF 198 (225)
Q Consensus 181 i~~~~d~ee~~~~l~~~~ 198 (225)
++-.+|++++.++|.+..
T Consensus 347 ~~~~~~~~~~~~~i~~~~ 364 (366)
T PRK14489 347 RLDINDVKQIADFVRQWL 364 (366)
T ss_pred cCCccCHHHHHHHHHHHh
Confidence 344688999988887753
Done!