Query 027290
Match_columns 225
No_of_seqs 137 out of 1285
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 2.2E-42 4.9E-47 300.2 23.9 188 20-224 137-331 (365)
2 KOG0698 Serine/threonine prote 100.0 1.6E-40 3.4E-45 286.6 24.4 206 3-224 95-305 (330)
3 KOG0697 Protein phosphatase 1B 100.0 3.5E-41 7.6E-46 273.4 18.7 204 3-223 73-291 (379)
4 PF00481 PP2C: Protein phospha 100.0 7.4E-42 1.6E-46 285.4 14.0 179 21-215 70-254 (254)
5 PTZ00224 protein phosphatase 2 100.0 8.6E-39 1.9E-43 278.8 24.0 179 24-224 84-272 (381)
6 KOG0699 Serine/threonine prote 100.0 1.7E-37 3.6E-42 260.0 15.5 167 44-225 326-505 (542)
7 COG0631 PTC1 Serine/threonine 100.0 2.4E-35 5.2E-40 246.8 16.8 172 22-224 80-253 (262)
8 KOG0700 Protein phosphatase 2C 100.0 3.8E-34 8.2E-39 244.0 16.3 180 19-207 166-376 (390)
9 smart00332 PP2Cc Serine/threon 100.0 1.6E-31 3.5E-36 221.9 22.8 182 20-220 72-255 (255)
10 cd00143 PP2Cc Serine/threonine 100.0 4E-31 8.6E-36 219.0 24.2 186 18-222 67-254 (254)
11 PRK14559 putative protein seri 100.0 5.3E-30 1.1E-34 235.3 19.1 175 23-224 455-636 (645)
12 KOG1323 Serine/threonine phosp 100.0 1.8E-27 4E-32 198.0 16.9 188 19-223 217-487 (493)
13 KOG0618 Serine/threonine phosp 99.9 4.9E-21 1.1E-25 177.4 12.3 176 24-224 589-773 (1081)
14 KOG1379 Serine/threonine prote 99.8 2.4E-18 5.2E-23 143.2 15.3 159 16-221 141-329 (330)
15 smart00331 PP2C_SIG Sigma fact 99.5 6.7E-13 1.5E-17 106.0 15.3 124 26-206 66-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.4 1.7E-12 3.6E-17 105.2 9.8 102 44-189 93-196 (212)
17 PF07228 SpoIIE: Stage II spor 99.4 1.7E-10 3.7E-15 91.8 19.4 143 26-223 40-193 (193)
18 TIGR02865 spore_II_E stage II 99.3 3.3E-11 7.2E-16 114.4 16.3 138 27-222 617-763 (764)
19 COG2208 RsbU Serine phosphatas 97.9 0.00097 2.1E-08 58.7 16.3 122 48-223 231-366 (367)
20 COG3700 AphA Acid phosphatase 59.4 14 0.00031 29.3 3.7 47 163-210 73-130 (237)
21 PF09436 DUF2016: Domain of un 47.4 13 0.00027 24.8 1.4 17 160-176 26-42 (72)
22 PF05402 PqqD: Coenzyme PQQ sy 46.8 59 0.0013 20.6 4.7 40 163-204 3-42 (68)
23 PF05785 CNF1: Rho-activating 44.5 26 0.00057 29.6 3.2 25 45-70 129-153 (281)
24 TIGR03859 PQQ_PqqD coenzyme PQ 40.1 73 0.0016 21.4 4.4 41 161-204 16-56 (81)
25 PF06972 DUF1296: Protein of u 31.9 93 0.002 19.9 3.5 27 175-204 19-45 (60)
26 PF14014 DUF4230: Protein of u 31.5 2.2E+02 0.0048 21.2 6.8 41 147-187 75-115 (157)
27 PF04155 Ground-like: Ground-l 28.4 1.6E+02 0.0035 19.4 4.6 42 176-220 7-48 (76)
28 COG2168 DsrH Uncharacterized c 27.9 47 0.001 23.4 1.9 29 157-186 22-50 (96)
29 TIGR02276 beta_rpt_yvtn 40-res 27.2 91 0.002 17.2 2.9 20 59-78 3-22 (42)
30 PRK15322 invasion protein OrgB 24.0 3.9E+02 0.0085 21.6 6.6 51 155-206 142-193 (210)
31 PF01436 NHL: NHL repeat; Int 22.4 1.3E+02 0.0028 15.5 3.5 20 55-74 8-27 (28)
32 COG3315 O-Methyltransferase in 22.4 1.2E+02 0.0027 25.9 3.8 94 69-189 104-197 (297)
33 PRK02079 pyrroloquinoline quin 22.3 2.1E+02 0.0046 19.7 4.3 40 161-203 21-60 (88)
34 cd00534 DHNA_DHNTPE Dihydroneo 21.0 3.2E+02 0.0069 19.5 5.9 52 167-218 43-96 (118)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=2.2e-42 Score=300.20 Aligned_cols=188 Identities=37% Similarity=0.671 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC-CCCCCceeEEEEEeCCeEEEEEcccCcEEEEeeccCCCCCCCCccccceeeEec
Q 027290 20 KAAKKAILDGFRKTDESLLQESVSG-GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVV 98 (225)
Q Consensus 20 ~~~~~~l~~a~~~~~~~l~~~~~~~-~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~l 98 (225)
..+.++|.++|.++++.+.+....+ ...+|||++++++.++++|+||+||||+|+++++ ++++|
T Consensus 137 ~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g---------------~~~~L 201 (365)
T PLN03145 137 REIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRG---------------KAIEM 201 (365)
T ss_pred hhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCC---------------eEEEe
Confidence 4678889999999999998765333 3458999999999999999999999999999999 99999
Q ss_pred CCCCCCCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCC------CcccCCceEEEEecCCCeEEEEecCCcc
Q 027290 99 TRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF------GVVATPDIHSFEVTERDHFIILGCDGLW 172 (225)
Q Consensus 99 t~DH~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~------~v~~~p~i~~~~l~~~d~~lil~SDGl~ 172 (225)
|+||+|.++.|++||.+.||.+. .++++|.+.+||+|||..+|.. +++++|++..+++.++|+||||||||||
T Consensus 202 T~DH~~~~~~E~~RI~~~Gg~v~-~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLw 280 (365)
T PLN03145 202 SRDHKPMCSKERKRIEASGGYVY-DGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIW 280 (365)
T ss_pred cCCCCCCCHHHHHHHHHcCCcee-cceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccc
Confidence 99999999999999999999986 5788898999999999887642 4788999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027290 173 GVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 173 d~l~~~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~~DNiTvivi~~~~ 224 (225)
|+|+++|+++++...+....+++.+|+.|+++|+ .+++.||+|||||+|+.
T Consensus 281 dvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al-~rgs~DNITvIVV~l~~ 331 (365)
T PLN03145 281 DVFRSQNAVDFARRRLQEHNDPVMCSKELVDEAL-KRKSGDNLAVVVVCFQS 331 (365)
T ss_pred cCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hCCCCCCEEEEEEEeec
Confidence 9999999999988877766689999999999997 79999999999999974
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-40 Score=286.59 Aligned_cols=206 Identities=36% Similarity=0.551 Sum_probs=179.4
Q ss_pred HHHHHHHhccccccCCHHHHHHHHHHHHH-HHHHHHHhhhcCCCCCCCceeEEEEEeCC-eEEEEEcccCcEEEEeeccC
Q 027290 3 RSVYMLMLFQLAYHLDVKAAKKAILDGFR-KTDESLLQESVSGGWQDGATAVCIWILGR-TVFVANIGDAKAVVARSSIV 80 (225)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~-~~~~~l~~~~~~~~~~~GtT~~~~~i~~~-~l~~anvGDSr~~l~~~~~~ 80 (225)
++++..+..+..........++++.++|. +++..+.+. ..+...+|||++++++.++ ++|+||+||||+++++.+
T Consensus 95 ~~L~~~l~~~~~~~~~~~~~~~a~~~~F~~~~D~~~~~~-~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~-- 171 (330)
T KOG0698|consen 95 KHLHKNLLEQLAFPKDRQDVKDALRRAFLTKTDSEFLEK-REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKG-- 171 (330)
T ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCC--
Confidence 35556666666555444678999999999 699999876 2224567899888888755 999999999999999754
Q ss_pred CCCCCCCccccceeeEecCCCCCCCCHHHHHHHHHcCCEEeeC---CcccceeeeeccccCccCcCCCcccCCceEEEEe
Q 027290 81 DGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSN---GRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEV 157 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~lt~DH~~~~~~e~~ri~~~g~~~~~~---~r~~g~~~~sR~lGd~~~k~~~v~~~p~i~~~~l 157 (225)
+ .+++||.||.|..+.|+.||.++||++... +|++|.++++|+|||..+|.++++++|++....+
T Consensus 172 --------~----~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~ 239 (330)
T KOG0698|consen 172 --------G----VAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKI 239 (330)
T ss_pred --------C----eeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEc
Confidence 0 699999999999999999999999999864 4999999999999999999878999999999999
Q ss_pred cCCCeEEEEecCCcccccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027290 158 TERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 158 ~~~d~~lil~SDGl~d~l~~~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~~DNiTvivi~~~~ 224 (225)
.+.|+|||||||||||+++++|++++++..+.....+..++..|...|+ .+++.||||||||.|.+
T Consensus 240 ~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~-~~~s~DnitvvvV~l~~ 305 (330)
T KOG0698|consen 240 NSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEAL-SRGSKDNITVVVVRLKS 305 (330)
T ss_pred CCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHh-hcCCCCCeEEEEEEecC
Confidence 9999999999999999999999999999976555688999999999997 89999999999999975
No 3
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-41 Score=273.44 Aligned_cols=204 Identities=31% Similarity=0.570 Sum_probs=183.9
Q ss_pred HHHHHHHhcccccc-----CCHHHHHHHHHHHHHHHHHHHHhhhc--CCCCCCCceeEEEEEeCCeEEEEEcccCcEEEE
Q 027290 3 RSVYMLMLFQLAYH-----LDVKAAKKAILDGFRKTDESLLQESV--SGGWQDGATAVCIWILGRTVFVANIGDAKAVVA 75 (225)
Q Consensus 3 ~~~~~~~~~~~~~~-----~~~~~~~~~l~~a~~~~~~~l~~~~~--~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~ 75 (225)
.++++.++....+. -+.+++++.|+..|.++++.++.... ....++|||++++++...++|++|+||||++++
T Consensus 73 ~hLlehi~sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~ 152 (379)
T KOG0697|consen 73 EHLLEHIISSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLC 152 (379)
T ss_pred HHHHHHhhhhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhhee
Confidence 45555555555553 36678999999999999999988763 344669999999999999999999999999999
Q ss_pred eeccCCCCCCCCccccceeeEecCCCCCCCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCC--------Ccc
Q 027290 76 RSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVV 147 (225)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~lt~DH~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~--------~v~ 147 (225)
|++ .+..-|.||.|.++.|++||..+||.+. -.|++|.++++|+|||++||.. .++
T Consensus 153 rng---------------~~~f~TqDHKP~~p~EkeRIqnAGGSVM-IqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVS 216 (379)
T KOG0697|consen 153 RNG---------------EVVFSTQDHKPYLPKEKERIQNAGGSVM-IQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVS 216 (379)
T ss_pred cCC---------------ceEEeccCCCCCChHHHHHHhcCCCeEE-EEEecceeeeehhccCcccccCCCCCchhcccC
Confidence 999 9999999999999999999999999987 5799999999999999999964 589
Q ss_pred cCCceEEEEecCCCeEEEEecCCcccccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEec
Q 027290 148 ATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFR 223 (225)
Q Consensus 148 ~~p~i~~~~l~~~d~~lil~SDGl~d~l~~~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~~DNiTvivi~~~ 223 (225)
++|+|..+.-...|+|||||+||+||+|+++|+++++...+.-..+...+|...++.++ -.|++||+|+++|.|.
T Consensus 217 PEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCL-hKGSRDNMsivlvcfp 291 (379)
T KOG0697|consen 217 PEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCL-HKGSRDNMSIVLVCFP 291 (379)
T ss_pred CCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHH-hccCccCceEEEEecC
Confidence 99999999999888899999999999999999999999998878899999999999998 7999999999999885
No 4
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=7.4e-42 Score=285.39 Aligned_cols=179 Identities=42% Similarity=0.677 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhcC-CCCCCCceeEEEEEeCCeEEEEEcccCcEEEEeeccCCCCCCCCccccceeeE-e
Q 027290 21 AAKKAILDGFRK-TDESLLQESVS-GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAI-V 97 (225)
Q Consensus 21 ~~~~~l~~a~~~-~~~~l~~~~~~-~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~-~ 97 (225)
.+.++|..+|.+ +++.+...... ....+|||++++++.++++|+||+||||+|+++.+ ... +
T Consensus 70 ~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~---------------~~~~~ 134 (254)
T PF00481_consen 70 DIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNG---------------GIIKQ 134 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETT---------------EEEEE
T ss_pred chhhcccceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeecc---------------ccccc
Confidence 688999999999 88888763322 55679999999999999999999999999999998 666 9
Q ss_pred cCCCCCCCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcC---CCcccCCceEEEEecCCCeEEEEecCCcccc
Q 027290 98 VTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKK---FGVVATPDIHSFEVTERDHFIILGCDGLWGV 174 (225)
Q Consensus 98 lt~DH~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~---~~v~~~p~i~~~~l~~~d~~lil~SDGl~d~ 174 (225)
||.||+|.++.|+.||.++||.+...+|+.|.+++||+|||..+|+ ++++++|+|..+++.++|+|||||||||||+
T Consensus 135 Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~ 214 (254)
T PF00481_consen 135 LTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDV 214 (254)
T ss_dssp SS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTT
T ss_pred cccccccchhhccceeeccccccccchhhhhccccccccccccccccccceeeeecccccccccccceEEEEEccccccc
Confidence 9999999999999999999999988889999999999999999998 7899999999999999988999999999999
Q ss_pred cChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCc
Q 027290 175 FGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNC 215 (225)
Q Consensus 175 l~~~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~~DNi 215 (225)
|+++|+++++.+....+.+|+.+|++|+++|+ ++|+.|||
T Consensus 215 l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~-~~gs~DNi 254 (254)
T PF00481_consen 215 LSNEEIVDIVRESLNSGRSPQEAAEKLVDEAI-ARGSKDNI 254 (254)
T ss_dssp SHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH-HTTHHSHE
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-hcCCCCCC
Confidence 99999999999988765679999999999997 89999997
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=8.6e-39 Score=278.77 Aligned_cols=179 Identities=34% Similarity=0.588 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCceeEEEEEe-CCeEEEEEcccCcEEEEeeccCCCCCCCCccccceeeEecCCCC
Q 027290 24 KAILDGFRKTDESLLQESVSGGWQDGATAVCIWIL-GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVH 102 (225)
Q Consensus 24 ~~l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~-~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt~DH 102 (225)
+.|.+++..+|+.+.+.. ..+|||++++++. ++++|++|+||||+|+++++ ++++||+||
T Consensus 84 ~~l~~a~~~~d~~i~~~~----~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g---------------~~~~LT~DH 144 (381)
T PTZ00224 84 ERMEELCLEIDEEWMDSG----REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDG---------------KLVFATEDH 144 (381)
T ss_pred HHHHHHHHHHHHHHHhcc----cCCCCeEEEEEEEECCEEEEEEcccceEEEEECC---------------EEEEcccCC
Confidence 458889999999987643 2469999998876 57999999999999999998 999999999
Q ss_pred CCCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCC--------CcccCCceEEEEecCCCeEEEEecCCccc-
Q 027290 103 KAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGLWG- 173 (225)
Q Consensus 103 ~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~--------~v~~~p~i~~~~l~~~d~~lil~SDGl~d- 173 (225)
++.++.|++||.+.|+.+. .+|+.|.+.+||+|||..+|.. .+++.|++..+.+.++| |||||||||||
T Consensus 145 ~~~~~~E~~RI~~~gg~v~-~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~ 222 (381)
T PTZ00224 145 KPNNPGERQRIEACGGRVV-SNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEG 222 (381)
T ss_pred CCCCHHHHhHHHHccCEec-cccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCCC-EEEEECCCcCcC
Confidence 9999999999999999997 4688999999999999876643 36789999999998765 99999999999
Q ss_pred ccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027290 174 VFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 174 ~l~~~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~~DNiTvivi~~~~ 224 (225)
+++++|+.+++.+.+....+++.+|+.|+++|+ .+|+.||||||||+|..
T Consensus 223 ~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~-~rGs~DNITvIvV~~~~ 272 (381)
T PTZ00224 223 NFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAI-RRGSKDNISCLIVQLKD 272 (381)
T ss_pred ccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hcCCCCCEEEEEEEeeC
Confidence 899999999998766555689999999999997 89999999999999864
No 6
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-37 Score=260.04 Aligned_cols=167 Identities=35% Similarity=0.618 Sum_probs=156.4
Q ss_pred CCCCCCceeEEEEEeCCeEEEEEcccCcEEEEeeccCCCCCCCCccccceeeEecCCCCCCCCHHHHHHHHHcCCEEeeC
Q 027290 44 GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSN 123 (225)
Q Consensus 44 ~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt~DH~~~~~~e~~ri~~~g~~~~~~ 123 (225)
.+..+|||++||++.+++||+||.|||||++.|++ +.+-++.||.|..+.|..||..+||.+.-+
T Consensus 326 PG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~G---------------kAvdmS~DHKPEDevE~~RI~~AGG~vtlD 390 (542)
T KOG0699|consen 326 PGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNG---------------KAVDMSVDHKPEDEVETNRIHAAGGQVTLD 390 (542)
T ss_pred CCCCCCceEEEEEecCceEEEecCCCcceEEecCC---------------ceeecccCCCcccHHHHHHHHhcCCeEeec
Confidence 45568999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CcccceeeeeccccCccCcCC--------CcccCCceEEEEecCCCeEEEEecCCcccccChHHHHHHHHHHHhcCCCHH
Q 027290 124 GRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVT 195 (225)
Q Consensus 124 ~r~~g~~~~sR~lGd~~~k~~--------~v~~~p~i~~~~l~~~d~~lil~SDGl~d~l~~~ei~~~i~~~~~~~~~~~ 195 (225)
+|++|+++++|+|||+.||.. .+++.|||....|.+.|+|+|+|+||||++|+.+|++++++..+..+....
T Consensus 391 GRVNGGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls 470 (542)
T KOG0699|consen 391 GRVNGGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLS 470 (542)
T ss_pred ceecCccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHH
Confidence 999999999999999999953 688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-----CCCCCCcEEEEEEecCC
Q 027290 196 AVSRRLVREAVLE-----RRCKDNCTAIVIIFRHK 225 (225)
Q Consensus 196 ~~a~~L~~~a~~~-----~~~~DNiTvivi~~~~~ 225 (225)
.+|+.|++.++.. ..++||+|||++.|+++
T Consensus 471 ~iceeL~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 471 EICEELCDACLAPSTDGDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred HHHHHHHHhhcCCCCCCCCcCCCcceEEEEEeccc
Confidence 9999999999732 24789999999999753
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-35 Score=246.84 Aligned_cols=172 Identities=25% Similarity=0.416 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhc--CCCCCCCceeEEEEEeCCeEEEEEcccCcEEEEeeccCCCCCCCCccccceeeEecC
Q 027290 22 AKKAILDGFRKTDESLLQESV--SGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVT 99 (225)
Q Consensus 22 ~~~~l~~a~~~~~~~l~~~~~--~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt 99 (225)
+.+.|.+++..+++.+..... .+...+|||++++++.++++|+|||||||+|+++++ .++|+|
T Consensus 80 ~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~---------------~~~~lT 144 (262)
T COG0631 80 LEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDG---------------ELKQLT 144 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCC---------------ceEEec
Confidence 789999999999999998864 344668999999999999999999999999999999 999999
Q ss_pred CCCCCCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCCCcccCCceEEEEecCCCeEEEEecCCcccccChHH
Q 027290 100 RVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD 179 (225)
Q Consensus 100 ~DH~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~~v~~~p~i~~~~l~~~d~~lil~SDGl~d~l~~~e 179 (225)
.||++.+..++.++...++.... +|.+ .+||+||+... ..|++....+.++ +|||||||||||.+++++
T Consensus 145 ~DH~~~~~~~~~~~~~~~~~~~~-~~~~---~ltralG~~~~------~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~ 213 (262)
T COG0631 145 EDHSLVNRLEQRGIITPEEARSH-PRRN---ALTRALGDFDL------LEPDITELELEPG-DFLLLCSDGLWDVVSDDE 213 (262)
T ss_pred cCCcHHHHHHHhcCCCHHHHHhC-ccch---hhhhhcCCCcc------cceeEEEEEcCCC-CEEEEECCCCccCcCHHH
Confidence 99999999999998776665543 3332 89999998654 7899999999998 699999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027290 180 AVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 180 i~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~~DNiTvivi~~~~ 224 (225)
+.+++.. ..+++.++++|++.|+ .+++.||+|+++|.+..
T Consensus 214 i~~il~~----~~~~~~~~~~li~~a~-~~g~~DNiT~ilv~~~~ 253 (262)
T COG0631 214 IVDILKN----SETPQEAADKLIELAL-EGGGPDNITVVLVRLNG 253 (262)
T ss_pred HHHHHhc----CCCHHHHHHHHHHHHH-hcCCCCceEEEEEEeec
Confidence 9998875 3589999999999997 79999999999999753
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-34 Score=244.04 Aligned_cols=180 Identities=29% Similarity=0.409 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC------CCCCCceeEEEEEeCCeEEEEEcccCcEEEEeeccCCCCCCCCccccc
Q 027290 19 VKAAKKAILDGFRKTDESLLQESVSG------GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSS 92 (225)
Q Consensus 19 ~~~~~~~l~~a~~~~~~~l~~~~~~~------~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~ 92 (225)
...+.++|.+||.++++.+.+..... -..+|+|+++.++.++.+|+||+|||||++.+.. +++..
T Consensus 166 ~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~---------~~~~~ 236 (390)
T KOG0700|consen 166 HGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVE---------NNGSW 236 (390)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceec---------CCCCe
Confidence 46789999999999999998765321 1237999999999999999999999999997655 22333
Q ss_pred eeeEecCCCCCCCCHHHHHHHHHcCC-----EEeeCCcccceeeeeccccCccCcC--------------------CCcc
Q 027290 93 LKAIVVTRVHKAIYPQERARIQKSGG-----TVSSNGRLQGRLEVSRAFGDRQFKK--------------------FGVV 147 (225)
Q Consensus 93 ~~~~~lt~DH~~~~~~e~~ri~~~g~-----~~~~~~r~~g~~~~sR~lGd~~~k~--------------------~~v~ 147 (225)
|..+|||.||+..++.|++||...+. .+..++|++|.+.++|||||..+|. |+++
T Consensus 237 ~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~Pylt 316 (390)
T KOG0700|consen 237 LVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLT 316 (390)
T ss_pred EEEEecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCcee
Confidence 79999999999999999999998774 2223469999999999999998884 3689
Q ss_pred cCCceEEEEecCCCeEEEEecCCcccccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027290 148 ATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVL 207 (225)
Q Consensus 148 ~~p~i~~~~l~~~d~~lil~SDGl~d~l~~~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~ 207 (225)
++|.|+.++|.++|+||||||||||++|+++|++.++...+....+-+.+|+.|++.|+.
T Consensus 317 aeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~ 376 (390)
T KOG0700|consen 317 AEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALG 376 (390)
T ss_pred ccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998765433456788888888873
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=1.6e-31 Score=221.90 Aligned_cols=182 Identities=42% Similarity=0.655 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC--CCCCCceeEEEEEeCCeEEEEEcccCcEEEEeeccCCCCCCCCccccceeeEe
Q 027290 20 KAAKKAILDGFRKTDESLLQESVSG--GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIV 97 (225)
Q Consensus 20 ~~~~~~l~~a~~~~~~~l~~~~~~~--~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (225)
..+.+.|.+++.++++.+....... ...+|||++++++..+++|++|+||||+|+++++ ++.+
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~---------------~~~~ 136 (255)
T smart00332 72 EDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNG---------------KAVQ 136 (255)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCC---------------ceeE
Confidence 4578889999999999998765433 2458999999999999999999999999999988 8999
Q ss_pred cCCCCCCCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCCCcccCCceEEEEecCCCeEEEEecCCcccccCh
Q 027290 98 VTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGP 177 (225)
Q Consensus 98 lt~DH~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~~v~~~p~i~~~~l~~~d~~lil~SDGl~d~l~~ 177 (225)
+|.||++.++.|..||...++.+. +++.++...++|++|+..+++. +...|++..+++.+.+++|||||||||+++++
T Consensus 137 lt~dh~~~~~~~~~~i~~~~~~~~-~~~~~~~~~lt~~~g~~~~~~~-i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~ 214 (255)
T smart00332 137 LTEDHKPSNEDERARIEAAGGFVI-NGRVNGVLALSRAIGDFFLKPY-VSAEPDVTVVELTEKDDFLILASDGLWDVLSN 214 (255)
T ss_pred cCCCCCCcCHHHHHHHHHcCCEEE-CCeECCeEecccccCCHhhcCC-eEeeeEEEEEEecCCCcEEEEECCccccCCCH
Confidence 999999999999999999999886 4577777899999999888754 88999999999733345899999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEE
Q 027290 178 SDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVI 220 (225)
Q Consensus 178 ~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~~DNiTvivi 220 (225)
+++.+++...... .+++.+|+.|.+.|. .++..||+|+|+|
T Consensus 215 ~~i~~~~~~~~~~-~~~~~~~~~l~~~a~-~~~~~Dn~T~ivv 255 (255)
T smart00332 215 QEVVDIVRKHLSK-SDPEEAAKRLIDLAL-ARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHHHHHhhc-CCHHHHHHHHHHHHH-HcCCCCCeEEEEC
Confidence 9999998776432 368999999999996 7899999999985
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=4e-31 Score=218.97 Aligned_cols=186 Identities=39% Similarity=0.658 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCCCceeEEEEEeCCeEEEEEcccCcEEEEeeccCCCCCCCCccccceee
Q 027290 18 DVKAAKKAILDGFRKTDESLLQESVS--GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKA 95 (225)
Q Consensus 18 ~~~~~~~~l~~a~~~~~~~l~~~~~~--~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~~ 95 (225)
....+...|..+|.++++.+...... ....+|||++++++.+++++++|+||||+|+++++ ++
T Consensus 67 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~---------------~~ 131 (254)
T cd00143 67 SEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG---------------EA 131 (254)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCC---------------ce
Confidence 36678889999999999999877543 34568999999999999999999999999999999 99
Q ss_pred EecCCCCCCCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCCCcccCCceEEEEecCCCeEEEEecCCccccc
Q 027290 96 IVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVF 175 (225)
Q Consensus 96 ~~lt~DH~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~~v~~~p~i~~~~l~~~d~~lil~SDGl~d~l 175 (225)
+++|.||++.++.+..|+...++.+. ..+.++...++|++|+..+++ ++...|++..+.+.+.+++|+|||||||+++
T Consensus 132 ~~lt~dh~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~t~~lG~~~~~~-~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l 209 (254)
T cd00143 132 VQLTKDHKPVNEEERERIEKAGGRVS-NGRVPGVLAVTRALGDFDLKP-GVSAEPDVTVVKLTEDDDFLILASDGLWDVL 209 (254)
T ss_pred eEcCCCCCCcChHHHHHHHHcCCcEE-eCEEcCceeeccccCCccccC-CEEcCCeEEEEEeCCCCcEEEEECCCCeecc
Confidence 99999999999999999999998754 345556678999999988884 4788999999999444458999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEe
Q 027290 176 GPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIF 222 (225)
Q Consensus 176 ~~~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~~DNiTvivi~~ 222 (225)
+++++.+++...... .+++.+|+.|++.|. .+++.||+|+|++.|
T Consensus 210 ~~~~i~~~~~~~~~~-~~~~~~a~~l~~~a~-~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 210 SNQEAVDIVRSELAK-EDLQEAAQELVDLAL-RRGSHDNITVVVVRL 254 (254)
T ss_pred ChHHHHHHHHHHhcc-cCHHHHHHHHHHHHH-hCCCCCCEEEEEEeC
Confidence 999999988775321 368999999999996 788999999999975
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.97 E-value=5.3e-30 Score=235.27 Aligned_cols=175 Identities=20% Similarity=0.260 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcC----CCCCCCceeEEEEEeCCeEEEEEcccCcEEEEe-eccCCCCCCCCccccceeeEe
Q 027290 23 KKAILDGFRKTDESLLQESVS----GGWQDGATAVCIWILGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKAIV 97 (225)
Q Consensus 23 ~~~l~~a~~~~~~~l~~~~~~----~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~-~~~~~~~~~~~~~~~~~~~~~ 97 (225)
.+.|.+++..+|+.+.+.... +...+|||++++++.++++|++||||||+|+++ ++ +++|
T Consensus 455 ~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g---------------~l~Q 519 (645)
T PRK14559 455 EETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKG---------------GLEQ 519 (645)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCC---------------eEEE
Confidence 567899999999999875422 334589999999999999999999999999985 56 8999
Q ss_pred cCCCCCCCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCCCcccCCceEEEEecCCCeEEEEecCCcccc--c
Q 027290 98 VTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGV--F 175 (225)
Q Consensus 98 lt~DH~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~~v~~~p~i~~~~l~~~d~~lil~SDGl~d~--l 175 (225)
||+||++.+...+.++....+. .+ ++...++|+||+...+ ..+|++..+.+.++ ++||||||||||+ +
T Consensus 520 LT~DHs~~~~lv~~Gi~~~~a~----~~-p~~~~LTrALG~~~~~----~l~Pdi~~~~L~~g-D~lLLCSDGL~D~~~v 589 (645)
T PRK14559 520 LTVDHEVGQREIQRGVEPQIAY----AR-PDAYQLTQALGPRDNS----AIQPDIQFLEIEED-TLLLLCSDGLSDNDLL 589 (645)
T ss_pred eCCCCCHHHHHHHhCCCHHHHh----cC-cccceeeeccCCCCCC----cccceEEEEEcCCC-CEEEEECCCCCCCccc
Confidence 9999998654333322111111 11 2346899999986543 25799999999876 4899999999994 4
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027290 176 GPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 176 ~~~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~~DNiTvivi~~~~ 224 (225)
.. ...+.+...+....+++++|+.|++.|+ .+|+.||+|+|||+++.
T Consensus 590 e~-~~~~~l~~il~~~~~l~~aa~~Li~~Al-~~gg~DNITvIvV~l~~ 636 (645)
T PRK14559 590 ET-HWQTHLLPLLSSSANLDQGLNKLIDLAN-QYNGHDNITAILVRLKV 636 (645)
T ss_pred ch-HHHHHHHHHHhcCCCHHHHHHHHHHHHH-HcCCCCcEEEEEEEecc
Confidence 43 3333444445555689999999999996 79999999999999864
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=1.8e-27 Score=197.97 Aligned_cols=188 Identities=24% Similarity=0.396 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceeEEEEEeCCeEEEEEcccCcEEEEeeccCCCCCCCCccccceeeEec
Q 027290 19 VKAAKKAILDGFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVV 98 (225)
Q Consensus 19 ~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~l 98 (225)
..-+..+|+.||..++++|.+........+|||+.+++..-+++|++|.||||++++|++ .++++
T Consensus 217 E~LViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrnd---------------eirpl 281 (493)
T KOG1323|consen 217 EHLVIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRND---------------EIRPL 281 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecC---------------Ceeec
Confidence 345677999999999999998877777789999999999999999999999999999999 99999
Q ss_pred CCCCCCCCHHHHHHHHHcCC--------EEe----------------------------------------------eCC
Q 027290 99 TRVHKAIYPQERARIQKSGG--------TVS----------------------------------------------SNG 124 (225)
Q Consensus 99 t~DH~~~~~~e~~ri~~~g~--------~~~----------------------------------------------~~~ 124 (225)
+++.+| +.||+|++..+- ... .+.
T Consensus 282 S~efTP--etERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrka 359 (493)
T KOG1323|consen 282 SKEFTP--ETERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKA 359 (493)
T ss_pred ccccCc--HHHHHHHHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhh
Confidence 999998 678899876441 110 112
Q ss_pred cccceeeeeccccCccCcC--------CCcccCCceEEEEecC----CCeEEEEecCCcccccChHHHHHHHHHHHhcCC
Q 027290 125 RLQGRLEVSRAFGDRQFKK--------FGVVATPDIHSFEVTE----RDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGL 192 (225)
Q Consensus 125 r~~g~~~~sR~lGd~~~k~--------~~v~~~p~i~~~~l~~----~d~~lil~SDGl~d~l~~~ei~~~i~~~~~~~~ 192 (225)
|+.+.+.++|.+||++++- |-+++.|+|.+..+.+ .|+.+||+|||+||+++++|+..++...+....
T Consensus 360 Rll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~d 439 (493)
T KOG1323|consen 360 RLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTD 439 (493)
T ss_pred hhhhhheeccccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCC
Confidence 3445799999999998773 3478899999998873 456999999999999999999999998876432
Q ss_pred --CH---HHHHHHHHHHHHH------------hCCCCCCcEEEEEEec
Q 027290 193 --SV---TAVSRRLVREAVL------------ERRCKDNCTAIVIIFR 223 (225)
Q Consensus 193 --~~---~~~a~~L~~~a~~------------~~~~~DNiTvivi~~~ 223 (225)
+| ..+|+.|+..|.- .-|+.|||||.||.+.
T Consensus 440 p~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 440 PADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred CCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEecc
Confidence 33 4567777766520 1267899999999875
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=4.9e-21 Score=177.35 Aligned_cols=176 Identities=27% Similarity=0.422 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCceeEEEEEeCC--------eEEEEEcccCcEEEEeeccCCCCCCCCccccceee
Q 027290 24 KAILDGFRKTDESLLQESVSGGWQDGATAVCIWILGR--------TVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKA 95 (225)
Q Consensus 24 ~~l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~~~--------~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~~ 95 (225)
+.|+++|..+++++-+.. ..-|..++.+.+..+ ++++||+|+|.+++++++ +-
T Consensus 589 ~~mr~~fl~~~rklg~~g----~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng---------------~~ 649 (1081)
T KOG0618|consen 589 EQMRNTFLRLNRKLGEEG----QVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNG---------------KP 649 (1081)
T ss_pred HHHHHHHHHHhhhhhhhh----ccccchhhheeecccccCcccchhhhHhhhccchhhhhhcC---------------Cc
Confidence 339999999999996553 334666666766543 789999999999999999 88
Q ss_pred EecCCCC-CCCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCCCcccCCceEEEEecCCCeEEEEecCCcccc
Q 027290 96 IVVTRVH-KAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGV 174 (225)
Q Consensus 96 ~~lt~DH-~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~~v~~~p~i~~~~l~~~d~~lil~SDGl~d~ 174 (225)
.+.|+-. ...+++|.+||...+|++.++++++|....||++|.....+ ++-+.|+|....+.+.|+|||+++-++|++
T Consensus 650 ~p~t~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P-~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~ 728 (1081)
T KOG0618|consen 650 LPTTRSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFP-HVLPDPHVSVVILTEQDEFLIVGNKQLWSV 728 (1081)
T ss_pred CcccccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeecccccccc-cccCCCceeeEecccCceEEEEcchHHhhh
Confidence 8888774 55689999999999999999999999999999999888776 599999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027290 175 FGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 175 l~~~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~~DNiTvivi~~~~ 224 (225)
|+.+++++.++. ..+|-.+|++|++.|. ..|+.||++++||++..
T Consensus 729 Lsid~a~~~vRn----~~dpL~AAkKL~d~Aq-SYgc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 729 LSIDTAVDAVRN----VEDPLLAAKKLCDLAQ-SYGCAENVSVLVVRLNH 773 (1081)
T ss_pred ccHHHHHHHHhc----CCchHHHHHHHHHHHH-hcccccCeeEEEEEeec
Confidence 999999998773 3589999999999995 99999999999999863
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.80 E-value=2.4e-18 Score=143.19 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=116.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceeEEEEEe--CCeEEEEEcccCcEEEEeeccCCCCCCCCccccce
Q 027290 16 HLDVKAAKKAILDGFRKTDESLLQESVSGGWQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSL 93 (225)
Q Consensus 16 ~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~ 93 (225)
.+++..+...|..|+.++.++ +...-++||++++.+. +++||+||+|||...++|+|
T Consensus 141 ~~~~~~P~~lL~~ay~~l~~~------~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G--------------- 199 (330)
T KOG1379|consen 141 DFNPSDPVNLLEKAYAELKSQ------KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREG--------------- 199 (330)
T ss_pred ccCCCChHHHHHHHHHHHhhc------CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECC---------------
Confidence 444446677777777665432 1223468999999988 88999999999999999999
Q ss_pred eeEecCCCCCCCCHHHHHHHHHcCCEEeeCCcccceeeee-----ccccCccCcCCCcccCCceEEEEecCCCeEEEEec
Q 027290 94 KAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVS-----RAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGC 168 (225)
Q Consensus 94 ~~~~lt~DH~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~s-----R~lGd~~~k~~~v~~~p~i~~~~l~~~d~~lil~S 168 (225)
++++.|..+... .+-.. +|.+. ..++| .....+...+.+.++| .|||||
T Consensus 200 ~vv~~S~~Q~H~----------------FN~Py--QLs~~p~~~~~~~~d-------~p~~ad~~~~~v~~GD-vIilAT 253 (330)
T KOG1379|consen 200 KVVFRSPEQQHY----------------FNTPY--QLSSPPEGYSSYISD-------VPDSADVTSFDVQKGD-VIILAT 253 (330)
T ss_pred EEEEcCchheec----------------cCCce--eeccCCccccccccC-------CccccceEEEeccCCC-EEEEec
Confidence 999998775431 01110 11111 11222 2234567888888887 799999
Q ss_pred CCcccccChHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH----------------------hCCCCCCcEEEEEE
Q 027290 169 DGLWGVFGPSDAVEFVQKLLK-EGLSVTAVSRRLVREAVL----------------------ERRCKDNCTAIVII 221 (225)
Q Consensus 169 DGl~d~l~~~ei~~~i~~~~~-~~~~~~~~a~~L~~~a~~----------------------~~~~~DNiTvivi~ 221 (225)
|||||+|.+++|..++..... ....++..|+.++..|.. ..|..||||+||..
T Consensus 254 DGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 254 DGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred ccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 999999999999999998877 567899999999999852 11568999999975
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.52 E-value=6.7e-13 Score=105.96 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceeEEEEE--eCCeEEEEEcccCcEEEEe-eccCCCCCCCCccccceeeEecCCCC
Q 027290 26 ILDGFRKTDESLLQESVSGGWQDGATAVCIWI--LGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKAIVVTRVH 102 (225)
Q Consensus 26 l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i--~~~~l~~anvGDSr~~l~~-~~~~~~~~~~~~~~~~~~~~~lt~DH 102 (225)
+.+.+..+|+.+... ....+|+|++++++ ..++++++|+||+|+|+++ ++ ...+.+.+.
T Consensus 66 ~~~~l~~~n~~l~~~---~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~---------------~~~~~~~~~ 127 (193)
T smart00331 66 LSQILERLNRAIYEN---GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADG---------------GLVEDLDDL 127 (193)
T ss_pred HHHHHHHHHHHHHhc---CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCC---------------CeEEEcCCC
Confidence 445566677777554 23457999999988 6789999999999999998 44 444455442
Q ss_pred CCCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCCCcccCCceEEEEecCCCeEEEEecCCcccccChHHHHH
Q 027290 103 KAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVE 182 (225)
Q Consensus 103 ~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~~v~~~p~i~~~~l~~~d~~lil~SDGl~d~l~~~ei~~ 182 (225)
++.+|... ...++...+.+.++| .|+|+|||||+.++++++.+
T Consensus 128 ------------------------------~~~lG~~~------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~ 170 (193)
T smart00331 128 ------------------------------GAPLGLEP------DVEVDVRELTLEPGD-LLLLYTDGLTEARNPERLEE 170 (193)
T ss_pred ------------------------------CceeeeCC------CCcceeEEEeeCCCC-EEEEECCCccccCChHHHHH
Confidence 23455221 123567788888887 68889999999999999888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH
Q 027290 183 FVQKLLKEGLSVTAVSRRLVREAV 206 (225)
Q Consensus 183 ~i~~~~~~~~~~~~~a~~L~~~a~ 206 (225)
++.+.. ..+++.+++++.++++
T Consensus 171 ~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 171 LLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred HHHHhc--CCCHHHHHHHHHHHHh
Confidence 887754 3478999999988864
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.40 E-value=1.7e-12 Score=105.19 Aligned_cols=102 Identities=23% Similarity=0.337 Sum_probs=56.7
Q ss_pred CCCCCCceeEEEEEeCCeEEEEEcccCcEEEE-eeccCCCCCCCCccccceeeEecCCCCCCCCHHHHHHHHHcCCEEee
Q 027290 44 GGWQDGATAVCIWILGRTVFVANIGDAKAVVA-RSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSS 122 (225)
Q Consensus 44 ~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~-~~~~~~~~~~~~~~~~~~~~~~lt~DH~~~~~~e~~ri~~~g~~~~~ 122 (225)
.....+||++++++.++.++++|+||||+|++ +++ .+.+++.+|+.. ..+
T Consensus 93 ~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g---------------~~~~l~~~~~~~----~~~---------- 143 (212)
T PF13672_consen 93 ELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNG---------------EIQQLTDDHSGE----YPN---------- 143 (212)
T ss_dssp GGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETT---------------EEEE-S---BHH----HHH----------
T ss_pred cccccCceEEEEEEECCEEEEEEECCCeEEEEECCC---------------EEEEcCCCccch----hhh----------
Confidence 34457999999999999999999999999765 566 899999999721 000
Q ss_pred CCcccceeeeeccccCccCcCCCcccCCceEEEEecCCCeEEEEecCCcccccChHH-HHHHHHHHHh
Q 027290 123 NGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-AVEFVQKLLK 189 (225)
Q Consensus 123 ~~r~~g~~~~sR~lGd~~~k~~~v~~~p~i~~~~l~~~d~~lil~SDGl~d~l~~~e-i~~~i~~~~~ 189 (225)
.++.+.... .....++..+++.+++ .|+|||||||+.+...+ +..++.+.++
T Consensus 144 ---------~~~~~~~~~-----~~~~~~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~l~~~~~ 196 (212)
T PF13672_consen 144 ---------QTRSLTGDD-----PEPDVQYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQFLKDLWN 196 (212)
T ss_dssp ---------CTTSCCHHC-----CCTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH------
T ss_pred ---------hhhccCccc-----cccCCeEEEEEcCCCC-EEEEECcCccccCCCHHHHHHHhhhccc
Confidence 122222111 1122255666667776 68889999999998765 5566655544
No 17
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.37 E-value=1.7e-10 Score=91.82 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceeEEEEEe--CCeEEEEEcccCcEEEEeeccCCCCCCCCccccceeeEecCCCCC
Q 027290 26 ILDGFRKTDESLLQESVSGGWQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHK 103 (225)
Q Consensus 26 l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt~DH~ 103 (225)
..+.+..+|+.+....... ..++|++++.+. .+.++++|+|++++++++++. + ....+.....
T Consensus 40 p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~---------~----~~~~~~~~~~ 104 (193)
T PF07228_consen 40 PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGTLTYANAGHPPPLLLRPGG---------R----EIEQLESEGP 104 (193)
T ss_dssp HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTEEEEEEESSSEEEEEETTC---------T----EEEEETCSSB
T ss_pred HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceEEEEeCCCCCCEEEEeccc---------c----ceeecccCcc
Confidence 4455666677774443222 367888888865 568999999999999999850 0 3333332222
Q ss_pred CCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCCCcccCCceEEEEecCCCeEEEEecCCcccccChHHH---
Q 027290 104 AIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDA--- 180 (225)
Q Consensus 104 ~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~~v~~~p~i~~~~l~~~d~~lil~SDGl~d~l~~~ei--- 180 (225)
| +|-.. ...+....+.+.++| .|+|+||||++....+.-
T Consensus 105 ~-------------------------------lG~~~------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~ 146 (193)
T PF07228_consen 105 P-------------------------------LGIFE------DIDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFG 146 (193)
T ss_dssp B-------------------------------CSSSC------TTCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCC
T ss_pred c-------------------------------eeeec------cccccceEEEecccc-EEEEeCCChhhccCCccchhH
Confidence 1 33110 123345566777776 699999999999854432
Q ss_pred ----HHHHHHHHhcCCCHHHHHHHHHHHHHH--hCCCCCCcEEEEEEec
Q 027290 181 ----VEFVQKLLKEGLSVTAVSRRLVREAVL--ERRCKDNCTAIVIIFR 223 (225)
Q Consensus 181 ----~~~i~~~~~~~~~~~~~a~~L~~~a~~--~~~~~DNiTvivi~~~ 223 (225)
.+.+.+. ...+++++++.+.+.+.. .....||+|+++++++
T Consensus 147 ~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 147 EERLLELLDEN--RGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp CHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred HHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 3333322 346799999999999853 2358999999999874
No 18
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.34 E-value=3.3e-11 Score=114.44 Aligned_cols=138 Identities=15% Similarity=0.106 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCceeEEEEEe--CCeEEEEEcccCcEEEEeeccCCCCCCCCccccceeeEecCCCCCC
Q 027290 27 LDGFRKTDESLLQESVSGGWQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKA 104 (225)
Q Consensus 27 ~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt~DH~~ 104 (225)
..++..+|+.+... ....+.+|+.+++++ .+++.++|+|+++.|+.+++ .+.+++..+.|
T Consensus 617 ~~ai~~lN~~L~~~---~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~---------------~v~~i~s~~lP 678 (764)
T TIGR02865 617 EVAIKTVNSILSLR---STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGA---------------KVEVIRSSNLP 678 (764)
T ss_pred HHHHHHHHHHHHhC---CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECC---------------EEEEecCCCce
Confidence 44566667666443 222368999999885 67999999999999999888 78888654332
Q ss_pred CCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCCCcccCCceEEEEecCCCeEEEEecCCcccccChHH-----
Q 027290 105 IYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD----- 179 (225)
Q Consensus 105 ~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~~v~~~p~i~~~~l~~~d~~lil~SDGl~d~l~~~e----- 179 (225)
+|-. -..+++....++.++| +|+|+|||+||..++++
T Consensus 679 -------------------------------lGil------~~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~ 720 (764)
T TIGR02865 679 -------------------------------IGIL------DEVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLW 720 (764)
T ss_pred -------------------------------eEec------cCCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHH
Confidence 2210 0124556777888887 79999999999987543
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--CCCCcEEEEEEe
Q 027290 180 AVEFVQKLLKEGLSVTAVSRRLVREAVLERR--CKDNCTAIVIIF 222 (225)
Q Consensus 180 i~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~--~~DNiTvivi~~ 222 (225)
+.+.+... ...+|+++++.|++++.+..+ ..||+|++++++
T Consensus 721 l~~~l~~~--~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 721 LVRKLKET--NTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 44444332 235899999999999864332 489999999986
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=97.89 E-value=0.00097 Score=58.66 Aligned_cols=122 Identities=15% Similarity=0.140 Sum_probs=82.1
Q ss_pred CCceeEEEEEe--CCeEEEEEcccCcEEEEeeccCCCCCCCCcccccee--eEecCCCCCCCCHHHHHHHHHcCCEEeeC
Q 027290 48 DGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLK--AIVVTRVHKAIYPQERARIQKSGGTVSSN 123 (225)
Q Consensus 48 ~GtT~~~~~i~--~~~l~~anvGDSr~~l~~~~~~~~~~~~~~~~~~~~--~~~lt~DH~~~~~~e~~ri~~~g~~~~~~ 123 (225)
+=+|+...+++ .+.+..+|+|---+++++.+. . +..++
T Consensus 231 ~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~--------------~~~~~~l~------------------------ 272 (367)
T COG2208 231 MFVTLFLGVYDLDSGELTYSNAGHEPALILSADG--------------EIEVEDLT------------------------ 272 (367)
T ss_pred cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCC--------------CceeEEcc------------------------
Confidence 45777777764 579999999999999988760 1 11111
Q ss_pred CcccceeeeeccccCccCcCCCcccCCceEEEEecCCCeEEEEecCCccc-------ccChHHHHHHHHHHHhcCCCHHH
Q 027290 124 GRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWG-------VFGPSDAVEFVQKLLKEGLSVTA 196 (225)
Q Consensus 124 ~r~~g~~~~sR~lGd~~~k~~~v~~~p~i~~~~l~~~d~~lil~SDGl~d-------~l~~~ei~~~i~~~~~~~~~~~~ 196 (225)
.....+|.. --..+.+....+.++| .+++.|||+++ .+..+...+++... ...++++
T Consensus 273 -------~~g~piG~~------~~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~--~~~~~~e 336 (367)
T COG2208 273 -------ALGLPIGLL------PDYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGRL--LGQPAEE 336 (367)
T ss_pred -------CCCceeeec------CCccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHHH--hCCCHHH
Confidence 122445521 1234456677778865 79999999999 45666666666652 3457888
Q ss_pred HHHHHHHHHHHh---CCCCCCcEEEEEEec
Q 027290 197 VSRRLVREAVLE---RRCKDNCTAIVIIFR 223 (225)
Q Consensus 197 ~a~~L~~~a~~~---~~~~DNiTvivi~~~ 223 (225)
+++.+.+....- ....||+|+++++++
T Consensus 337 ~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 337 ILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred HHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 888888876422 234688999999985
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=59.37 E-value=14 Score=29.33 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=31.9
Q ss_pred EEEEecCCcc-----------cccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 027290 163 FIILGCDGLW-----------GVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERR 210 (225)
Q Consensus 163 ~lil~SDGl~-----------d~l~~~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~ 210 (225)
.++..|.|+| |+|.++...+.+..-.++-.-|+++|..|++.-. +||
T Consensus 73 TvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq-~RG 130 (237)
T COG3700 73 TVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQ-RRG 130 (237)
T ss_pred eeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHH-hcC
Confidence 4666777776 5677777666655544444558999999998864 443
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=47.36 E-value=13 Score=24.83 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=12.3
Q ss_pred CCeEEEEecCCcccccC
Q 027290 160 RDHFIILGCDGLWGVFG 176 (225)
Q Consensus 160 ~d~~lil~SDGl~d~l~ 176 (225)
.++-+++++||+|=.+.
T Consensus 26 ~G~Rllva~nGv~lEv~ 42 (72)
T PF09436_consen 26 PGHRLLVASNGVFLEVR 42 (72)
T ss_pred CCcEEEEecCcEEEEEe
Confidence 34457789999996544
No 22
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=46.77 E-value=59 Score=20.59 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=16.2
Q ss_pred EEEEecCCcccccChHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027290 163 FIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVRE 204 (225)
Q Consensus 163 ~lil~SDGl~d~l~~~ei~~~i~~~~~~~~~~~~~a~~L~~~ 204 (225)
++++-.++-. ..-.+....+++.++.+.+..++++.|+++
T Consensus 3 ~vll~~~~~~--~~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 3 YVLLDPESGE--FTLNETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp EEEE------------THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred EEEEeCCCCC--ccccHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 3444444432 244455666666666556666666666644
No 23
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=44.46 E-value=26 Score=29.64 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=18.7
Q ss_pred CCCCCceeEEEEEeCCeEEEEEcccC
Q 027290 45 GWQDGATAVCIWILGRTVFVANIGDA 70 (225)
Q Consensus 45 ~~~~GtT~~~~~i~~~~l~~anvGDS 70 (225)
+..+|||.+.+ ++++.+|..|+|-+
T Consensus 129 G~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 129 GALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp --BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 34579998776 68999999999976
No 24
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=40.12 E-value=73 Score=21.42 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=28.6
Q ss_pred CeEEEEecCCcccccChHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027290 161 DHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVRE 204 (225)
Q Consensus 161 d~~lil~SDGl~d~l~~~ei~~~i~~~~~~~~~~~~~a~~L~~~ 204 (225)
+.++++...| ++.-+++...+++.++...+..++++.|.++
T Consensus 16 ~~~Vl~~p~~---~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~ 56 (81)
T TIGR03859 16 DCYVLLYPEG---MVKLNDSAGEILELCDGKRSLAEIIQELAQR 56 (81)
T ss_pred CcEEEEcCCc---eeeeChHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 4567767655 4555677777888777777777877777654
No 25
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=31.89 E-value=93 Score=19.89 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=21.4
Q ss_pred cChHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027290 175 FGPSDAVEFVQKLLKEGLSVTAVSRRLVRE 204 (225)
Q Consensus 175 l~~~ei~~~i~~~~~~~~~~~~~a~~L~~~ 204 (225)
-+++||..++.+. +.+|.+++++|+.+
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~q 45 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLSQ 45 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHhc
Confidence 4788998887765 35899999999874
No 26
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=31.50 E-value=2.2e+02 Score=21.24 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=27.1
Q ss_pred ccCCceEEEEecCCCeEEEEecCCcccccChHHHHHHHHHH
Q 027290 147 VATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKL 187 (225)
Q Consensus 147 ~~~p~i~~~~l~~~d~~lil~SDGl~d~l~~~ei~~~i~~~ 187 (225)
.+.|.+....++++.--++-...|+|..++.++..++....
T Consensus 75 LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 115 (157)
T PF14014_consen 75 LPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKEA 115 (157)
T ss_pred CCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHHH
Confidence 35666777777754433555888888888888766655543
No 27
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=28.42 E-value=1.6e+02 Score=19.37 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEE
Q 027290 176 GPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVI 220 (225)
Q Consensus 176 ~~~ei~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~~DNiTvivi 220 (225)
.++++.+++.+.+.. .++...++.|...|= .....++.||+-
T Consensus 7 n~~~L~~ii~~~~~~-~~~~~s~~~Iq~~~e--~~f~~~f~vIcs 48 (76)
T PF04155_consen 7 NSEELRKIILKNMKE-CNLSISKRAIQKAAE--KRFGGSFEVICS 48 (76)
T ss_pred CCHHHHHHHHHHhcc-CCHHHHHHHHHHHHH--HHhCCCEEEEEe
Confidence 456777888777664 478888888887762 333337777763
No 28
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=27.93 E-value=47 Score=23.43 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=21.6
Q ss_pred ecCCCeEEEEecCCcccccChHHHHHHHHH
Q 027290 157 VTERDHFIILGCDGLWGVFGPSDAVEFVQK 186 (225)
Q Consensus 157 l~~~d~~lil~SDGl~d~l~~~ei~~~i~~ 186 (225)
+.++|. ++|+.|||+-.+...+..+.+..
T Consensus 22 l~~~D~-vlL~qdGV~aAl~~~~~~~sl~~ 50 (96)
T COG2168 22 LTEGDA-VLLLQDGVYAALKGNRYLASLRE 50 (96)
T ss_pred hcccCe-EEEEcccchhhhcCcHHHHHHhc
Confidence 346665 88899999999988876655543
No 29
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=27.16 E-value=91 Score=17.16 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=15.7
Q ss_pred CCeEEEEEcccCcEEEEeec
Q 027290 59 GRTVFVANIGDAKAVVARSS 78 (225)
Q Consensus 59 ~~~l~~anvGDSr~~l~~~~ 78 (225)
++++|++|-|+..+.++...
T Consensus 3 ~~~lyv~~~~~~~v~~id~~ 22 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTA 22 (42)
T ss_pred CCEEEEEeCCCCEEEEEECC
Confidence 56799999998888887543
No 30
>PRK15322 invasion protein OrgB; Provisional
Probab=24.04 E-value=3.9e+02 Score=21.64 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=35.0
Q ss_pred EEecCCCeEEEEecCCcccccChHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 027290 155 FEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEG-LSVTAVSRRLVREAV 206 (225)
Q Consensus 155 ~~l~~~d~~lil~SDGl~d~l~~~ei~~~i~~~~~~~-~~~~~~a~~L~~~a~ 206 (225)
+....+.. +|+|||----.+|+++.++.....+... .+.+..|..|-..++
T Consensus 142 i~yhd~~r-FV~~~g~qIaEFsPq~~v~~a~~~l~~~~d~~~~~~r~ls~~~l 193 (210)
T PRK15322 142 LKYHQEQR-FIMSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAI 193 (210)
T ss_pred EEEcCCCc-eEEEeCCchhccCHHHHHHHHHHHHHhCccchHHHHHHHhHHHH
Confidence 33444444 5568888888899999998776665443 347777877776665
No 31
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.41 E-value=1.3e+02 Score=15.53 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=15.3
Q ss_pred EEEeCCeEEEEEcccCcEEE
Q 027290 55 IWILGRTVFVANIGDAKAVV 74 (225)
Q Consensus 55 ~~i~~~~l~~anvGDSr~~l 74 (225)
++-.++.+|++-.|..|+..
T Consensus 8 av~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEETTSEEEEEECCCTEEEE
T ss_pred EEeCCCCEEEEECCCCEEEE
Confidence 33478899999888888765
No 32
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.36 E-value=1.2e+02 Score=25.89 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=51.8
Q ss_pred cCcEEEEeeccCCCCCCCCccccceeeEecCCCCCCCCHHHHHHHHHcCCEEeeCCcccceeeeeccccCccCcCCCccc
Q 027290 69 DAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVA 148 (225)
Q Consensus 69 DSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt~DH~~~~~~e~~ri~~~g~~~~~~~r~~g~~~~sR~lGd~~~k~~~v~~ 148 (225)
|||+|.+.... ++.....||+...+.-.+.+.+.++......+ .+.-.+-+.+.. ..
T Consensus 104 DTRayRl~~~~--------------~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~-----~Va~Dl~~~dw~----~~ 160 (297)
T COG3315 104 DTRAYRLDWPK--------------GTRVFEVDLPEVIEFKKKLLAERGATPPAHRR-----LVAVDLREDDWP----QA 160 (297)
T ss_pred ccceeecCCCC--------------CCeEEECCCcHHHHHHHHHhhhcCCCCCceEE-----EEeccccccchH----HH
Confidence 99999998771 48888999998766655666666653321100 122122110000 00
Q ss_pred CCceEEEEecCCCeEEEEecCCcccccChHHHHHHHHHHHh
Q 027290 149 TPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLK 189 (225)
Q Consensus 149 ~p~i~~~~l~~~d~~lil~SDGl~d~l~~~ei~~~i~~~~~ 189 (225)
+..--+++.-..++ -.-||.-|++++++-.++.....
T Consensus 161 ---L~~~G~d~~~pt~~-iaEGLl~YL~~~~v~~ll~~I~~ 197 (297)
T COG3315 161 ---LAAAGFDRSRPTLW-IAEGLLMYLPEEAVDRLLSRIAA 197 (297)
T ss_pred ---HHhcCCCcCCCeEE-EeccccccCCHHHHHHHHHHHHH
Confidence 00011222222333 45799999999998877766543
No 33
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=22.29 E-value=2.1e+02 Score=19.67 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=22.3
Q ss_pred CeEEEEecCCcccccChHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027290 161 DHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVR 203 (225)
Q Consensus 161 d~~lil~SDGl~d~l~~~ei~~~i~~~~~~~~~~~~~a~~L~~ 203 (225)
+.+++|+--|. +.-++....|++.++...+..++++.|..
T Consensus 21 ~~~vlL~PEgm---i~Lnetg~~Iw~~~DG~~tv~eIi~~L~~ 60 (88)
T PRK02079 21 NCHVLLYPEGM---IKLNESAGEILGLIDGKRTVAAIIAELQQ 60 (88)
T ss_pred CceEEEcCCee---eeechHHHHHHHHccCCCCHHHHHHHHHH
Confidence 44666666664 34445555556655555555555555543
No 34
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=21.03 E-value=3.2e+02 Score=19.46 Aligned_cols=52 Identities=6% Similarity=0.116 Sum_probs=36.5
Q ss_pred ecCCcccccChHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCCCCCcEEE
Q 027290 167 GCDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAI 218 (225)
Q Consensus 167 ~SDGl~d~l~~~ei~~~i~~~~~~~--~~~~~~a~~L~~~a~~~~~~~DNiTvi 218 (225)
+||-+-+.++-.++.+.+....... ...+.+|+.+.+..+........+++-
T Consensus 43 ~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~~~~v~~v~v~ 96 (118)
T cd00534 43 ESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLEDYPKVSAIKVK 96 (118)
T ss_pred ccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 6888988999999998888866543 357889999998876332333344433
Done!