BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027291
MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL
KDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDERE
EALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCS
NNFPQAKEELEQMYKDVGIPEDFDYLELSPVPLSSVGDQTVEGCP

High Scoring Gene Products

Symbol, full name Information P value
ATMND1
AT4G29170
protein from Arabidopsis thaliana 3.2e-58
MND1
Meiotic nuclear division protein 1 homolog
protein from Bos taurus 2.9e-23
Mnd1
meiotic nuclear divisions 1 homolog (S. cerevisiae)
protein from Mus musculus 2.9e-23
MND1
Meiotic nuclear division protein 1 homolog
protein from Homo sapiens 3.8e-23
mnd1
meiotic nuclear divisions 1 homolog (S. cerevisiae)
gene_product from Danio rerio 2.7e-13
mnd1
meiotic nuclear division protein 1
gene from Dictyostelium discoideum 2.8e-11

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027291
        (225 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119881 - symbol:ATMND1 "AT4G29170" species:37...   598  3.2e-58   1
UNIPROTKB|Q32L19 - symbol:MND1 "Meiotic nuclear division ...   268  2.9e-23   1
MGI|MGI:1924165 - symbol:Mnd1 "meiotic nuclear divisions ...   268  2.9e-23   1
UNIPROTKB|Q9BWT6 - symbol:MND1 "Meiotic nuclear division ...   267  3.8e-23   1
ZFIN|ZDB-GENE-040801-116 - symbol:mnd1 "meiotic nuclear d...   174  2.7e-13   1
POMBASE|SPAC13A11.03 - symbol:mcp7 "meiosis specific coil...   158  1.3e-11   1
DICTYBASE|DDB_G0291750 - symbol:mnd1 "meiotic nuclear div...   155  2.8e-11   1


>TAIR|locus:2119881 [details] [associations]
            symbol:ATMND1 "AT4G29170" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006302 "double-strand break repair"
            evidence=RCA;IMP] [GO:0009553 "embryo sac development"
            evidence=IMP] [GO:0009555 "pollen development" evidence=RCA;IMP]
            [GO:0010212 "response to ionizing radiation" evidence=RCA;IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0000278 "mitotic
            cell cycle" evidence=RCA] [GO:0000724 "double-strand break repair
            via homologous recombination" evidence=RCA] [GO:0006261
            "DNA-dependent DNA replication" evidence=RCA] [GO:0006275
            "regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
            methylation" evidence=RCA] [GO:0006312 "mitotic recombination"
            evidence=RCA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=RCA] [GO:0007062 "sister chromatid
            cohesion" evidence=RCA] [GO:0007126 "meiosis" evidence=RCA]
            [GO:0007129 "synapsis" evidence=RCA] [GO:0007131 "reciprocal
            meiotic recombination" evidence=RCA] [GO:0009560 "embryo sac egg
            cell differentiation" evidence=RCA] [GO:0010332 "response to gamma
            radiation" evidence=RCA] [GO:0016444 "somatic cell DNA
            recombination" evidence=RCA] [GO:0016568 "chromatin modification"
            evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
            [GO:0042138 "meiotic DNA double-strand break formation"
            evidence=RCA] [GO:0042991 "transcription factor import into
            nucleus" evidence=RCA] [GO:0043687 "post-translational protein
            modification" evidence=RCA] [GO:0045132 "meiotic chromosome
            segregation" evidence=RCA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=RCA] [GO:0051726 "regulation
            of cell cycle" evidence=RCA] GO:GO:0007126 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0009555 EMBL:AL078470
            EMBL:AL161574 GO:GO:0010212 GO:GO:0006310 GO:GO:0006302
            GO:GO:0009553 eggNOG:COG5124 HOGENOM:HOG000006783
            InterPro:IPR005647 Pfam:PF03962 PIRSF:PIRSF026991 EMBL:AM162278
            EMBL:DQ248000 EMBL:AK117713 EMBL:BT005435 IPI:IPI00548107
            IPI:IPI00846479 PIR:T08972 RefSeq:NP_001078469.1 RefSeq:NP_194646.2
            UniGene:At.31952 IntAct:Q8GYD2 STRING:Q8GYD2 PaxDb:Q8GYD2
            PRIDE:Q8GYD2 EnsemblPlants:AT4G29170.1 GeneID:829038
            KEGG:ath:AT4G29170 TAIR:At4g29170 InParanoid:Q8GYD2 OMA:TEERTML
            PhylomeDB:Q8GYD2 ProtClustDB:CLSN2680146 Genevestigator:Q8GYD2
            Uniprot:Q8GYD2
        Length = 230

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 121/215 (56%), Positives = 139/215 (64%)

Query:     1 MSKKRGLSLEEKRGKILEIFYESQDFYXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXXX 60
             MSKKRGLSLEEKR K+L+IFYESQDF+             VI+                 
Sbjct:     1 MSKKRGLSLEEKREKMLQIFYESQDFFLLKELEKMGPKKGVISQSVKDVIQSLVDDDLVA 60

Query:    61 XXXIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALXXXXXXXXXXX 120
                IG S+YFWSLPSCAGNQLR+V +KLESDLQ S KR  ELV+QC AL           
Sbjct:    61 KDKIGISIYFWSLPSCAGNQLRSVRQKLESDLQGSNKRLAELVDQCEALKKGREESEERT 120

Query:   121 XXXXXXXXXXXXHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCS 180
                         H +LK+EM Q+ADNDPA  EA +NAIEVAH +ANRWTDNIFTL+QWCS
Sbjct:   121 EALTQLKDIEKKHKDLKNEMVQFADNDPATLEAKRNAIEVAHQSANRWTDNIFTLRQWCS 180

Query:   181 NNFPQAKEELEQMYKDVGIPEDFDYLELSPVPLSS 215
             NNFPQAKE+LE +Y + GI EDFDY+ELS  PLSS
Sbjct:   181 NNFPQAKEQLEHLYTEAGITEDFDYIELSSFPLSS 215


>UNIPROTKB|Q32L19 [details] [associations]
            symbol:MND1 "Meiotic nuclear division protein 1 homolog"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0007126 "meiosis" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] GO:GO:0005634
            GO:GO:0007126 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 eggNOG:COG5124 HOGENOM:HOG000006783
            InterPro:IPR005647 Pfam:PF03962 PIRSF:PIRSF026991 EMBL:BC109806
            IPI:IPI00696379 RefSeq:NP_001033312.1 UniGene:Bt.30108
            STRING:Q32L19 PRIDE:Q32L19 GeneID:618239 KEGG:bta:618239 CTD:84057
            HOVERGEN:HBG055698 InParanoid:Q32L19 OrthoDB:EOG4CZBGW
            NextBio:20901078 Uniprot:Q32L19
        Length = 205

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 63/208 (30%), Positives = 95/208 (45%)

Query:     1 MSKKRGLSLEEKRGKILEIFYESQD-FYXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXX 59
             MSKK+GLS EEKR +++EIFYE++D F              + T                
Sbjct:     1 MSKKKGLSAEEKRTRMMEIFYETKDVFQLKDMEKIAPKEKGITTMSVKEVLQSLVDDGMV 60

Query:    60 XXXXIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALXXXXXXXXXX 119
                 IGTS Y+W+ PS A +  +     L+S L    +++  L +               
Sbjct:    61 DCERIGTSNYYWAFPSKALHARKRKLEVLDSQLSEGNQKYANLQKSIEKAKVGRHETEER 120

Query:   120 XXXXXXXXXXXXXHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWC 179
                            +LK E+ +Y + DP   E ++ A +VA  AANRWTDNIF ++ W 
Sbjct:   121 TMLAKELSSLRDQREQLKAEVEKYRECDPQVVEEIRQANQVAKEAANRWTDNIFAIKSWA 180

Query:   180 SNNFPQAKEELEQMYKDVGIPEDFDYLE 207
                F   + +++   K+ GIPEDFDY++
Sbjct:   181 KRKFGFEENKID---KNFGIPEDFDYID 205


>MGI|MGI:1924165 [details] [associations]
            symbol:Mnd1 "meiotic nuclear divisions 1 homolog (S.
            cerevisiae)" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] MGI:MGI:1924165
            GO:GO:0005634 GO:GO:0007126 GO:GO:0003677 GO:GO:0006310
            eggNOG:COG5124 HOGENOM:HOG000006783 InterPro:IPR005647 Pfam:PF03962
            PIRSF:PIRSF026991 OMA:TEERTML CTD:84057 HOVERGEN:HBG055698
            OrthoDB:EOG4CZBGW GeneTree:ENSGT00490000043413 EMBL:AK011664
            EMBL:BC027741 IPI:IPI00132323 RefSeq:NP_084073.2 UniGene:Mm.274829
            IntAct:Q8K396 MINT:MINT-219233 STRING:Q8K396 PhosphoSite:Q8K396
            PaxDb:Q8K396 PRIDE:Q8K396 Ensembl:ENSMUST00000047368 GeneID:76915
            KEGG:mmu:76915 UCSC:uc008ppv.2 InParanoid:Q8K396 NextBio:346061
            Bgee:Q8K396 Genevestigator:Q8K396 Uniprot:Q8K396
        Length = 205

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 64/208 (30%), Positives = 95/208 (45%)

Query:     1 MSKKRGLSLEEKRGKILEIFYESQDFYXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXXX 60
             MSKKRGLS EEKR +++EIF+E++D +              IT                 
Sbjct:     1 MSKKRGLSGEEKRTRMMEIFFETKDVFQLKDLEKLAPKEKGITAMSVKEVLQSLVDDGMV 60

Query:    61 X-XXIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALXXXXXXXXXX 119
                 IGTS Y+W+ PS A +  +     L S L    ++H +L +               
Sbjct:    61 DCERIGTSNYYWAFPSKALHARKRKLEALNSQLSEGSQKHADLQKSIEKARVGRQETEER 120

Query:   120 XXXXXXXXXXXXXHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWC 179
                            +LK E+ +Y + DP   E ++ A +VA  AANRWTDNIF ++ W 
Sbjct:   121 AMLAKELSSFRDQRQQLKAEVEKYRECDPQVVEEIREANKVAKEAANRWTDNIFAIKSWA 180

Query:   180 SNNFPQAKEELEQMYKDVGIPEDFDYLE 207
                F   + +++   K+ GIPEDFDY++
Sbjct:   181 KRKFGFEESKID---KNFGIPEDFDYID 205


>UNIPROTKB|Q9BWT6 [details] [associations]
            symbol:MND1 "Meiotic nuclear division protein 1 homolog"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0007126 "meiosis"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] GO:GO:0005634
            GO:GO:0007126 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 EMBL:CH471056 eggNOG:COG5124 HOGENOM:HOG000006783
            InterPro:IPR005647 Pfam:PF03962 PIRSF:PIRSF026991 OMA:TEERTML
            CTD:84057 HOVERGEN:HBG055698 OrthoDB:EOG4CZBGW EMBL:AY028916
            EMBL:AK312172 EMBL:BC032142 IPI:IPI00029810 RefSeq:NP_115493.1
            UniGene:Hs.294088 ProteinModelPortal:Q9BWT6 STRING:Q9BWT6
            PhosphoSite:Q9BWT6 DMDM:74733462 PRIDE:Q9BWT6 DNASU:84057
            Ensembl:ENST00000240488 GeneID:84057 KEGG:hsa:84057 UCSC:uc003ink.2
            GeneCards:GC04P154265 HGNC:HGNC:24839 HPA:HPA039941 MIM:611422
            neXtProt:NX_Q9BWT6 PharmGKB:PA143485544 InParanoid:Q9BWT6
            PhylomeDB:Q9BWT6 GenomeRNAi:84057 NextBio:73199 ArrayExpress:Q9BWT6
            Bgee:Q9BWT6 CleanEx:HS_MND1 Genevestigator:Q9BWT6 Uniprot:Q9BWT6
        Length = 205

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 64/208 (30%), Positives = 95/208 (45%)

Query:     1 MSKKRGLSLEEKRGKILEIFYESQDFYXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXXX 60
             MSKK+GLS EEKR +++EIF E++D +              IT                 
Sbjct:     1 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV 60

Query:    61 X-XXIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALXXXXXXXXXX 119
                 IGTS Y+W+ PS A +  ++    LES L    ++H  L +               
Sbjct:    61 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEER 120

Query:   120 XXXXXXXXXXXXXHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWC 179
                            +LK E+ +Y D DP   E ++ A +VA  AANRWTDNIF ++ W 
Sbjct:   121 TRLAKELSSLRDQREQLKAEVEKYKDCDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWA 180

Query:   180 SNNFPQAKEELEQMYKDVGIPEDFDYLE 207
                F   + ++++ +   GIPEDFDY++
Sbjct:   181 KRKFGFEENKIDRTF---GIPEDFDYID 205


>ZFIN|ZDB-GENE-040801-116 [details] [associations]
            symbol:mnd1 "meiotic nuclear divisions 1 homolog
            (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0007126 "meiosis" evidence=IEA] ZFIN:ZDB-GENE-040801-116
            GO:GO:0005634 GO:GO:0007126 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 eggNOG:COG5124 HOGENOM:HOG000006783
            InterPro:IPR005647 Pfam:PF03962 PIRSF:PIRSF026991 CTD:84057
            HOVERGEN:HBG055698 OrthoDB:EOG4CZBGW EMBL:BC078223 IPI:IPI00503550
            RefSeq:NP_001003597.1 UniGene:Dr.82040 PRIDE:Q6DC61
            Ensembl:ENSDART00000054265 GeneID:445203 KEGG:dre:445203
            GeneTree:ENSGT00490000043413 InParanoid:Q6DC61 OMA:HETEERV
            NextBio:20831964 Bgee:Q6DC61 Uniprot:Q6DC61
        Length = 220

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 47/174 (27%), Positives = 72/174 (41%)

Query:     1 MSKKRGLSLEEKRGKILEIFYESQDFYXXXXXXXXXXXXXVIT-XXXXXXXXXXXXXXXX 59
             MSKK+GLSLEEKR +++EIF+E++D +              IT                 
Sbjct:     1 MSKKKGLSLEEKRSRMMEIFFETKDVFQLKDIEKIAPKSKGITPMSVKEVLQSLVDDNMV 60

Query:    60 XXXXIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALXXXXXXXXXX 119
                 +GTS Y+W+ PS A +  +    +LE  L+   +R   L +  +            
Sbjct:    61 DTERVGTSNYYWAFPSKALHARKRRLEELEKQLEDGSQRKKALQQAVDKAKVGREVNEER 120

Query:   120 XXXXXXXXXXXXXHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIF 173
                            ++K E+ +Y + DPA  E ++NA   A  A  RWT   F
Sbjct:   121 EDLLKELTALKGQRDQMKVEIEKYQECDPAVVEEIRNANIAAKEAVARWTGGTF 174


>POMBASE|SPAC13A11.03 [details] [associations]
            symbol:mcp7 "meiosis specific coiled-coil protein Mcp7"
            species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
            chromatin" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0007129 "synapsis" evidence=IMP] [GO:0007131
            "reciprocal meiotic recombination" evidence=IGI;IMP]
            PomBase:SPAC13A11.03 GO:GO:0005829 EMBL:CU329670
            GenomeReviews:CU329670_GR GO:GO:0000790 GO:GO:0006302 GO:GO:0007131
            GO:GO:0007129 EMBL:AB189985 PIR:T37610 RefSeq:NP_592991.1
            STRING:Q09739 EnsemblFungi:SPAC13A11.03.1 GeneID:2542548
            KEGG:spo:SPAC13A11.03 eggNOG:COG5124 HOGENOM:HOG000006783
            OMA:IGSGNWY OrthoDB:EOG4SR15W NextBio:20803600 InterPro:IPR005647
            Pfam:PF03962 PIRSF:PIRSF026991 Uniprot:Q09739
        Length = 210

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 52/211 (24%), Positives = 82/211 (38%)

Query:     5 RGLSLEEKRGKILEIFYESQDFYXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXXXXXXI 64
             +GLSL EKR ++  IF++S+DF+             ++                     I
Sbjct:     4 KGLSLAEKRRRLEAIFHDSKDFFQLKEVEKLGSKKQIVLQTVKDVLQSLVDDNIVKTEKI 63

Query:    65 GTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCN---ALXXXXXXXXXXXX 121
             GTS Y+WS PS A     +V   L++ L   K++   L E  +   +             
Sbjct:    64 GTSNYYWSFPSDAKRSRESVLGSLQAQLDDLKQKSKTLDENISFEKSKRDNEGTENDANQ 123

Query:   122 XXXXXXXXXXXHIEL-KDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCS 180
                         ++L K ++      +P  FE      +    AAN WTD I TL  +C 
Sbjct:   124 YTLELLHAKESELKLLKTQLSNLNHCNPETFELKNENTKKYMEAANLWTDQIHTLIAFCR 183

Query:   181 NNFPQAKEELEQMYKDVGIPEDFDYLELSPV 211
             +       +  Q+ +   IPED D L+L P+
Sbjct:   184 D----MGADTNQIREYCSIPEDLDDLQL-PI 209


>DICTYBASE|DDB_G0291750 [details] [associations]
            symbol:mnd1 "meiotic nuclear division protein 1"
            species:44689 "Dictyostelium discoideum" [GO:0007131 "reciprocal
            meiotic recombination" evidence=ISS] [GO:0003690 "double-stranded
            DNA binding" evidence=ISS] [GO:0000794 "condensed nuclear
            chromosome" evidence=ISS] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            dictyBase:DDB_G0291750 GenomeReviews:CM000155_GR EMBL:AAFI02000182
            GO:GO:0003690 GO:GO:0000794 GO:GO:0007131 eggNOG:COG5124
            InterPro:IPR005647 Pfam:PF03962 PIRSF:PIRSF026991
            RefSeq:XP_629976.1 STRING:Q54E86 EnsemblProtists:DDB0302477
            GeneID:8628306 KEGG:ddi:DDB_G0291750 OMA:KSERVES Uniprot:Q54E86
        Length = 221

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 46/207 (22%), Positives = 85/207 (41%)

Query:     2 SKKRGLSLEEKRGKILEIFYESQDFYXXXXXXXXXXXXXVITXXX-XXXXXXXXXXXXXX 60
             ++++G+S EEK+ K+ E F+ +   Y              +T                  
Sbjct:     3 TRRKGMSPEEKKEKLKEFFHSNSTIYSSKDVESEASKYTGMTQVQCKETLQMLIDDGVVN 62

Query:    61 XXXIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALXXXXXXXXXXX 120
                +G+S ++WS PS   +  ++   +    L  +K+R     ++   L           
Sbjct:    63 TDKMGSSNFYWSFPSFEFDSKKDKIIEQTKLLSETKERIQSETKKIEQLKSERVESETRT 122

Query:   121 XXXXXXXXXXXXHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCS 180
                         +   K+E+  YAD+  +  +  K  I++A AA NR+TDNI +L+Q+C 
Sbjct:   123 KNLEKLQTLKDDNKSFKEELLLYADS--SLIDDKKRDIKIAIAAVNRYTDNISSLRQFCD 180

Query:   181 NNFPQAKEELEQMYKDVGIPEDFDYLE 207
             + +     + +  +   GI  D DYLE
Sbjct:   181 SKYNIRPSDFDTSF---GIKPDMDYLE 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       169   0.00082  108 3  11 22  0.43    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.77u 0.14s 14.91t   Elapsed:  00:00:01
  Total cpu time:  14.77u 0.14s 14.91t   Elapsed:  00:00:01
  Start:  Fri May 10 08:39:53 2013   End:  Fri May 10 08:39:54 2013

Back to top