Query 027291
Match_columns 225
No_of_seqs 114 out of 197
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03962 Mnd1: Mnd1 family; I 100.0 5.1E-72 1.1E-76 474.8 22.4 187 16-205 1-188 (188)
2 KOG3433 Protein involved in me 100.0 7.1E-68 1.5E-72 440.6 20.2 202 2-207 1-203 (203)
3 COG5124 Protein predicted to b 100.0 1.2E-62 2.6E-67 408.0 19.7 204 2-208 1-208 (209)
4 PF07106 TBPIP: Tat binding pr 98.7 4E-06 8.6E-11 69.8 18.3 144 14-162 4-158 (169)
5 KOG4603 TBP-1 interacting prot 97.5 0.038 8.3E-07 46.8 18.9 175 14-200 10-200 (201)
6 PF08679 DsrD: Dissimilatory s 97.0 0.0014 3.1E-08 47.0 4.7 56 13-70 3-61 (67)
7 KOG3433 Protein involved in me 96.4 0.016 3.4E-07 49.5 7.8 41 43-83 11-53 (203)
8 PF04703 FaeA: FaeA-like prote 95.9 0.012 2.5E-07 41.8 3.8 60 13-75 2-62 (62)
9 PF03965 Penicillinase_R: Peni 95.5 0.075 1.6E-06 41.2 7.5 63 14-77 6-69 (115)
10 PF02002 TFIIE_alpha: TFIIE al 95.4 0.015 3.3E-07 44.4 3.2 60 13-76 15-79 (105)
11 cd07153 Fur_like Ferric uptake 95.0 0.053 1.1E-06 41.6 5.1 61 12-72 2-65 (116)
12 PF01475 FUR: Ferric uptake re 94.7 0.044 9.6E-07 42.6 4.0 70 5-74 2-73 (120)
13 smart00550 Zalpha Z-DNA-bindin 94.5 0.14 3E-06 36.5 5.9 53 7-62 2-55 (68)
14 cd00090 HTH_ARSR Arsenical Res 94.5 0.23 5E-06 33.6 6.9 60 10-75 6-65 (78)
15 PF13412 HTH_24: Winged helix- 94.4 0.11 2.4E-06 33.9 4.9 47 10-60 2-48 (48)
16 PRK06266 transcription initiat 94.4 0.12 2.7E-06 43.7 6.4 63 11-77 22-89 (178)
17 KOG0250 DNA repair protein RAD 94.1 0.85 1.8E-05 48.0 12.7 119 81-201 399-547 (1074)
18 smart00418 HTH_ARSR helix_turn 93.9 0.13 2.8E-06 34.0 4.5 51 16-71 2-52 (66)
19 PF09789 DUF2353: Uncharacteri 93.1 1.7 3.6E-05 40.3 11.7 77 88-168 91-173 (319)
20 PRK09462 fur ferric uptake reg 92.8 0.15 3.3E-06 41.2 4.1 70 3-72 9-81 (148)
21 TIGR02698 CopY_TcrY copper tra 91.8 1 2.2E-05 36.0 7.6 63 14-77 7-70 (130)
22 PF12840 HTH_20: Helix-turn-he 91.7 0.35 7.6E-06 33.2 4.2 51 11-65 10-60 (61)
23 COG0735 Fur Fe2+/Zn2+ uptake r 91.5 0.27 5.8E-06 40.1 4.1 64 4-67 14-79 (145)
24 PRK06474 hypothetical protein; 91.3 3.8 8.3E-05 34.4 11.0 66 10-77 10-79 (178)
25 PF12325 TMF_TATA_bd: TATA ele 91.2 5.9 0.00013 31.6 11.3 45 120-164 64-111 (120)
26 PTZ00464 SNF-7-like protein; P 91.1 6.3 0.00014 34.3 12.4 87 79-165 14-118 (211)
27 COG1579 Zn-ribbon protein, pos 90.8 11 0.00025 33.4 14.0 95 80-178 49-146 (239)
28 TIGR00373 conserved hypothetic 90.6 0.51 1.1E-05 39.1 5.0 59 14-76 17-80 (158)
29 PF09339 HTH_IclR: IclR helix- 90.6 0.44 9.5E-06 31.8 3.8 49 11-62 3-51 (52)
30 COG1777 Predicted transcriptio 90.5 3.3 7.2E-05 36.2 9.9 50 11-66 15-67 (217)
31 smart00346 HTH_ICLR helix_turn 89.8 1.2 2.6E-05 32.2 5.9 52 9-63 3-54 (91)
32 PF05158 RNA_pol_Rpc34: RNA po 89.7 0.64 1.4E-05 43.0 5.3 69 8-79 6-76 (327)
33 TIGR02702 SufR_cyano iron-sulf 89.6 1.2 2.7E-05 37.7 6.7 64 13-80 3-70 (203)
34 PF08317 Spc7: Spc7 kinetochor 89.6 16 0.00036 33.4 14.8 43 155-197 243-285 (325)
35 PRK11639 zinc uptake transcrip 89.6 0.31 6.7E-06 40.6 2.9 63 4-66 19-83 (169)
36 COG1675 TFA1 Transcription ini 89.1 3.8 8.3E-05 34.8 9.1 44 35-78 38-86 (176)
37 PF02403 Seryl_tRNA_N: Seryl-t 89.0 3.6 7.9E-05 31.3 8.3 63 79-144 32-94 (108)
38 PF08317 Spc7: Spc7 kinetochor 88.9 19 0.0004 33.0 16.9 44 121-164 181-224 (325)
39 COG2433 Uncharacterized conser 88.8 14 0.00029 37.2 13.9 148 3-162 318-508 (652)
40 PRK10141 DNA-binding transcrip 88.4 7.1 0.00015 30.9 9.8 61 10-74 15-75 (117)
41 PF09744 Jnk-SapK_ap_N: JNK_SA 88.2 13 0.00028 31.1 11.6 63 118-181 90-153 (158)
42 PF13730 HTH_36: Helix-turn-he 88.2 0.88 1.9E-05 30.2 3.9 52 5-59 1-55 (55)
43 PF01978 TrmB: Sugar-specific 88.0 0.65 1.4E-05 32.4 3.2 56 14-74 11-66 (68)
44 smart00531 TFIIE Transcription 87.6 1.1 2.4E-05 36.5 4.8 48 26-76 15-70 (147)
45 PF15556 Zwint: ZW10 interacto 86.9 20 0.00044 31.4 12.3 113 90-203 91-214 (252)
46 KOG0995 Centromere-associated 86.7 31 0.00066 34.4 14.8 24 88-111 233-256 (581)
47 PF05008 V-SNARE: Vesicle tran 86.4 5.3 0.00012 28.6 7.4 58 79-141 21-78 (79)
48 PRK11637 AmiB activator; Provi 86.3 30 0.00066 32.7 14.7 30 80-109 44-73 (428)
49 PF13851 GAS: Growth-arrest sp 85.4 16 0.00035 31.4 11.1 87 81-167 91-196 (201)
50 PF05010 TACC: Transforming ac 85.3 24 0.00053 30.7 13.0 120 78-197 25-159 (207)
51 PRK02224 chromosome segregatio 84.9 12 0.00026 38.4 11.7 14 60-78 453-466 (880)
52 smart00420 HTH_DEOR helix_turn 84.9 2.5 5.4E-05 26.9 4.7 48 14-65 3-50 (53)
53 COG3883 Uncharacterized protei 84.6 13 0.00029 33.5 10.5 77 64-140 19-96 (265)
54 TIGR03185 DNA_S_dndD DNA sulfu 84.6 29 0.00062 34.7 14.0 58 117-175 262-325 (650)
55 cd04766 HTH_HspR Helix-Turn-He 84.6 6.4 0.00014 29.1 7.3 47 26-81 1-47 (91)
56 PF06160 EzrA: Septation ring 84.5 19 0.00041 35.6 12.6 60 120-183 375-434 (560)
57 PF08784 RPA_C: Replication pr 84.3 1.8 4E-05 32.6 4.3 49 9-60 45-96 (102)
58 PF07798 DUF1640: Protein of u 84.2 17 0.00036 30.4 10.4 21 149-169 138-158 (177)
59 PF09730 BicD: Microtubule-ass 83.3 18 0.00038 37.1 11.9 54 118-172 90-144 (717)
60 COG1497 Predicted transcriptio 83.0 2.2 4.8E-05 38.1 4.8 77 2-89 5-81 (260)
61 PF05557 MAD: Mitotic checkpoi 82.9 19 0.00042 36.5 12.2 72 75-146 502-588 (722)
62 PRK11637 AmiB activator; Provi 82.7 40 0.00086 31.9 13.6 33 77-109 48-80 (428)
63 PF13591 MerR_2: MerR HTH fami 82.6 5 0.00011 29.6 5.9 31 48-81 15-45 (84)
64 smart00787 Spc7 Spc7 kinetocho 82.4 32 0.00068 31.7 12.3 114 78-197 167-280 (312)
65 PF11559 ADIP: Afadin- and alp 81.9 21 0.00047 28.7 10.0 14 48-61 6-19 (151)
66 PF06476 DUF1090: Protein of u 81.7 24 0.00052 27.9 12.1 84 82-165 23-112 (115)
67 PF06005 DUF904: Protein of un 81.6 18 0.00038 26.3 8.8 27 151-177 41-67 (72)
68 PRK10411 DNA-binding transcrip 81.5 11 0.00024 33.0 8.8 60 10-75 3-62 (240)
69 PF12761 End3: Actin cytoskele 81.4 35 0.00075 29.6 11.8 87 84-182 97-186 (195)
70 PF15188 CCDC-167: Coiled-coil 81.4 11 0.00023 28.5 7.3 57 90-146 5-65 (85)
71 smart00347 HTH_MARR helix_turn 81.2 16 0.00034 26.1 8.2 73 5-83 6-80 (101)
72 PHA00738 putative HTH transcri 81.1 6.8 0.00015 30.8 6.4 69 8-80 9-77 (108)
73 KOG0972 Huntingtin interacting 80.0 44 0.00096 31.0 12.1 72 114-188 301-379 (384)
74 PRK05431 seryl-tRNA synthetase 80.0 14 0.00029 35.4 9.4 66 76-144 28-93 (425)
75 PRK04778 septation ring format 79.2 69 0.0015 31.6 15.2 59 120-182 379-437 (569)
76 PF08220 HTH_DeoR: DeoR-like h 78.9 4.5 9.8E-05 27.6 4.3 47 13-63 2-48 (57)
77 KOG0995 Centromere-associated 78.7 67 0.0014 32.1 13.7 22 146-167 329-350 (581)
78 PF07106 TBPIP: Tat binding pr 78.6 32 0.00069 28.3 10.1 75 118-197 80-154 (169)
79 PLN02678 seryl-tRNA synthetase 78.5 16 0.00035 35.3 9.4 66 76-144 33-98 (448)
80 PRK14137 recX recombination re 78.5 4.7 0.0001 34.6 5.2 62 4-65 30-93 (195)
81 PF15450 DUF4631: Domain of un 77.9 69 0.0015 31.7 13.4 94 91-187 420-517 (531)
82 PF09726 Macoilin: Transmembra 77.8 41 0.0009 34.4 12.5 27 86-112 491-517 (697)
83 PF12718 Tropomyosin_1: Tropom 77.2 38 0.00082 27.6 11.7 92 81-175 33-134 (143)
84 COG3937 Uncharacterized conser 77.1 28 0.00062 27.3 8.7 82 43-140 23-106 (108)
85 TIGR00606 rad50 rad50. This fa 77.0 54 0.0012 35.7 13.8 99 70-180 568-670 (1311)
86 PF14197 Cep57_CLD_2: Centroso 76.8 25 0.00054 25.3 8.2 60 82-142 4-65 (69)
87 PF08279 HTH_11: HTH domain; 76.7 7.7 0.00017 25.5 4.9 42 13-57 2-43 (55)
88 PRK09413 IS2 repressor TnpA; R 76.6 31 0.00067 26.9 9.1 53 2-60 8-60 (121)
89 PF03962 Mnd1: Mnd1 family; I 76.2 18 0.00039 30.8 8.1 106 85-202 64-174 (188)
90 COG2345 Predicted transcriptio 76.2 26 0.00056 30.8 9.3 71 13-87 13-87 (218)
91 PHA02943 hypothetical protein; 75.6 19 0.00041 30.2 7.8 69 5-79 3-73 (165)
92 PRK09834 DNA-binding transcrip 75.6 5.9 0.00013 34.9 5.2 60 1-63 1-60 (263)
93 PRK10884 SH3 domain-containing 75.5 53 0.0012 28.4 12.6 28 80-107 90-117 (206)
94 PF04156 IncA: IncA protein; 75.4 46 0.00099 27.6 13.7 66 79-144 84-150 (191)
95 COG4477 EzrA Negative regulato 75.2 53 0.0012 32.7 11.9 59 121-183 379-437 (570)
96 PF12802 MarR_2: MarR family; 74.4 10 0.00022 25.2 5.1 54 6-64 2-56 (62)
97 PF14282 FlxA: FlxA-like prote 74.4 30 0.00065 26.6 8.3 54 89-142 18-76 (106)
98 KOG0933 Structural maintenance 74.2 54 0.0012 35.0 12.2 100 78-178 401-501 (1174)
99 PF06005 DUF904: Protein of un 73.4 32 0.0007 24.9 10.2 30 80-109 8-37 (72)
100 PF12128 DUF3584: Protein of u 73.3 62 0.0013 35.0 13.0 33 146-178 768-800 (1201)
101 TIGR02209 ftsL_broad cell divi 73.3 11 0.00025 27.1 5.5 34 119-154 33-66 (85)
102 PRK03573 transcriptional regul 73.2 43 0.00094 26.3 10.5 72 4-80 26-98 (144)
103 PF13601 HTH_34: Winged helix 73.1 22 0.00047 25.9 6.9 73 13-89 2-77 (80)
104 PF05701 WEMBL: Weak chloropla 73.0 88 0.0019 30.7 13.0 52 125-176 243-308 (522)
105 PF05837 CENP-H: Centromere pr 72.9 41 0.00089 25.9 10.1 28 147-174 53-82 (106)
106 COG1579 Zn-ribbon protein, pos 72.9 61 0.0013 28.9 10.9 38 76-113 52-89 (239)
107 PF10153 DUF2361: Uncharacteri 72.7 46 0.00099 26.4 9.9 82 73-166 18-99 (114)
108 PF01726 LexA_DNA_bind: LexA D 72.7 9.8 0.00021 26.9 4.8 51 9-62 4-59 (65)
109 PF08614 ATG16: Autophagy prot 72.5 58 0.0013 27.5 10.4 107 76-182 67-185 (194)
110 PF04065 Not3: Not1 N-terminal 72.2 62 0.0013 28.7 10.7 86 79-164 118-212 (233)
111 COG1522 Lrp Transcriptional re 71.7 4 8.6E-05 32.4 2.9 67 7-77 4-78 (154)
112 PF07061 Swi5: Swi5; InterPro 71.6 39 0.00085 25.1 9.9 76 121-202 4-82 (83)
113 PRK15422 septal ring assembly 71.3 38 0.00082 25.2 7.7 25 86-110 7-31 (79)
114 TIGR00414 serS seryl-tRNA synt 71.3 40 0.00086 32.1 10.0 67 76-144 30-96 (418)
115 TIGR02168 SMC_prok_B chromosom 71.0 71 0.0015 33.2 12.5 59 125-183 966-1027(1179)
116 PRK13729 conjugal transfer pil 70.9 32 0.00069 33.6 9.2 58 81-144 67-124 (475)
117 COG5185 HEC1 Protein involved 70.8 35 0.00077 33.6 9.4 95 83-181 330-435 (622)
118 PF01466 Skp1: Skp1 family, di 70.6 4.2 9.1E-05 29.5 2.6 43 158-205 16-63 (78)
119 cd07625 BAR_Vps17p The Bin/Amp 70.5 76 0.0016 28.0 11.8 61 114-174 119-189 (230)
120 PF10805 DUF2730: Protein of u 70.4 16 0.00035 28.2 5.9 73 67-144 20-92 (106)
121 PRK13509 transcriptional repre 70.3 10 0.00022 33.4 5.4 55 8-66 2-56 (251)
122 PF11569 Homez: Homeodomain le 70.2 2.9 6.2E-05 29.2 1.5 34 16-50 13-46 (56)
123 PF01022 HTH_5: Bacterial regu 69.8 8.9 0.00019 24.8 3.8 45 11-60 2-46 (47)
124 cd00890 Prefoldin Prefoldin is 69.7 28 0.00061 26.7 7.3 48 63-110 74-121 (129)
125 COG5185 HEC1 Protein involved 69.6 1.2E+02 0.0026 30.0 14.7 33 147-179 366-398 (622)
126 PF10458 Val_tRNA-synt_C: Valy 69.6 20 0.00044 25.1 5.9 60 84-143 5-65 (66)
127 PF12777 MT: Microtubule-bindi 69.6 27 0.00059 32.2 8.3 31 151-181 279-309 (344)
128 PF05600 DUF773: Protein of un 69.5 1.2E+02 0.0026 29.9 14.7 151 30-188 52-238 (507)
129 PF10146 zf-C4H2: Zinc finger- 69.5 80 0.0017 27.9 14.7 69 118-201 40-109 (230)
130 smart00787 Spc7 Spc7 kinetocho 69.5 93 0.002 28.6 16.7 81 84-170 145-225 (312)
131 PRK03918 chromosome segregatio 69.4 91 0.002 31.9 12.8 30 81-110 624-653 (880)
132 PRK00767 transcriptional regul 68.9 12 0.00025 30.4 5.2 56 2-79 1-56 (197)
133 PF05278 PEARLI-4: Arabidopsis 68.8 92 0.002 28.3 13.7 47 25-80 56-102 (269)
134 COG1422 Predicted membrane pro 68.7 31 0.00067 30.0 7.8 50 90-144 72-121 (201)
135 smart00345 HTH_GNTR helix_turn 68.6 6.1 0.00013 25.8 2.9 32 28-62 22-53 (60)
136 TIGR03545 conserved hypothetic 68.1 65 0.0014 32.1 11.0 57 88-144 180-239 (555)
137 COG2433 Uncharacterized conser 68.0 82 0.0018 31.9 11.5 88 1-101 269-370 (652)
138 PF04977 DivIC: Septum formati 68.0 22 0.00049 24.9 6.0 10 176-185 58-67 (80)
139 PF06163 DUF977: Bacterial pro 68.0 13 0.00028 30.1 5.0 65 7-80 5-72 (127)
140 PRK09039 hypothetical protein; 67.8 1E+02 0.0023 28.5 12.5 52 122-173 142-200 (343)
141 PF05667 DUF812: Protein of un 67.6 99 0.0021 31.1 12.2 84 80-169 325-418 (594)
142 COG4942 Membrane-bound metallo 67.6 62 0.0013 31.2 10.3 20 124-143 87-106 (420)
143 COG4026 Uncharacterized protei 67.4 94 0.002 27.8 10.9 65 124-190 163-230 (290)
144 PF09789 DUF2353: Uncharacteri 67.2 1.1E+02 0.0024 28.5 14.2 73 57-147 112-184 (319)
145 TIGR02168 SMC_prok_B chromosom 67.0 1.5E+02 0.0033 30.8 13.9 18 123-140 439-456 (1179)
146 KOG0999 Microtubule-associated 66.8 38 0.00082 34.0 8.8 27 120-146 166-192 (772)
147 PF09304 Cortex-I_coil: Cortex 66.5 62 0.0013 25.4 8.6 15 149-163 77-91 (107)
148 PF07848 PaaX: PaaX-like prote 66.5 16 0.00036 26.2 4.9 57 14-70 4-64 (70)
149 PF09440 eIF3_N: eIF3 subunit 66.5 53 0.0011 26.5 8.4 60 117-195 69-128 (133)
150 PRK04863 mukB cell division pr 66.2 1.1E+02 0.0024 34.1 13.2 23 88-110 312-334 (1486)
151 PRK10163 DNA-binding transcrip 66.1 14 0.0003 32.7 5.5 56 5-63 19-74 (271)
152 PF07139 DUF1387: Protein of u 65.9 1.1E+02 0.0023 28.4 11.1 34 147-180 241-283 (302)
153 PF10562 CaM_bdg_C0: Calmoduli 65.9 7.8 0.00017 23.4 2.6 20 153-172 9-28 (29)
154 PF04111 APG6: Autophagy prote 65.9 22 0.00049 32.6 6.9 56 82-143 42-97 (314)
155 KOG0963 Transcription factor/C 65.7 66 0.0014 32.5 10.4 96 79-181 281-383 (629)
156 PF10211 Ax_dynein_light: Axon 65.7 31 0.00067 29.3 7.3 20 36-55 79-98 (189)
157 PF09726 Macoilin: Transmembra 65.6 1.3E+02 0.0029 30.7 12.9 108 81-188 550-661 (697)
158 TIGR00738 rrf2_super rrf2 fami 65.5 7.6 0.00016 30.2 3.3 60 13-76 10-72 (132)
159 COG0640 ArsR Predicted transcr 65.5 20 0.00043 25.0 5.3 55 12-70 26-80 (110)
160 PRK10920 putative uroporphyrin 65.2 57 0.0012 31.1 9.6 83 63-149 49-131 (390)
161 COG3883 Uncharacterized protei 65.1 1.1E+02 0.0024 27.8 11.0 40 72-111 19-59 (265)
162 KOG0971 Microtubule-associated 65.0 90 0.0019 33.3 11.4 70 101-170 308-389 (1243)
163 cd00092 HTH_CRP helix_turn_hel 64.9 23 0.0005 23.7 5.3 34 27-63 26-59 (67)
164 PLN02320 seryl-tRNA synthetase 64.8 43 0.00093 33.0 8.9 66 75-144 92-157 (502)
165 PF07724 AAA_2: AAA domain (Cd 64.7 2.2 4.8E-05 35.5 0.1 59 26-84 71-136 (171)
166 smart00419 HTH_CRP helix_turn_ 64.3 5.6 0.00012 25.0 2.0 29 35-63 14-42 (48)
167 PRK03947 prefoldin subunit alp 64.3 24 0.00052 28.0 6.1 46 64-109 82-127 (140)
168 TIGR01010 BexC_CtrB_KpsE polys 63.9 1.2E+02 0.0026 27.8 12.3 80 85-165 172-258 (362)
169 PF10376 Mei5: Double-strand r 63.8 78 0.0017 27.8 9.6 79 116-205 130-219 (221)
170 smart00529 HTH_DTXR Helix-turn 63.8 19 0.00041 26.2 5.0 41 36-81 6-46 (96)
171 TIGR00634 recN DNA repair prot 63.7 1.6E+02 0.0034 29.1 14.7 55 127-181 276-333 (563)
172 KOG0250 DNA repair protein RAD 63.5 1.1E+02 0.0023 33.0 11.8 23 43-65 318-340 (1074)
173 PF03961 DUF342: Protein of un 63.4 70 0.0015 30.5 10.0 33 79-111 330-362 (451)
174 PRK10884 SH3 domain-containing 63.4 43 0.00093 29.0 7.8 21 89-109 92-112 (206)
175 TIGR03752 conj_TIGR03752 integ 63.3 57 0.0012 31.9 9.3 15 40-54 51-65 (472)
176 PF10796 Anti-adapt_IraP: Sigm 63.2 44 0.00096 25.2 6.9 65 121-185 7-84 (87)
177 PHA01750 hypothetical protein 63.2 18 0.00039 26.2 4.5 30 81-110 40-69 (75)
178 PF11932 DUF3450: Protein of u 63.2 1E+02 0.0023 26.9 11.9 19 120-138 52-70 (251)
179 PF10146 zf-C4H2: Zinc finger- 63.1 1.1E+02 0.0023 27.0 12.1 65 97-167 32-99 (230)
180 PF01325 Fe_dep_repress: Iron 63.0 5.6 0.00012 27.6 1.9 41 22-65 18-58 (60)
181 PF04111 APG6: Autophagy prote 62.9 1.2E+02 0.0027 27.7 13.9 23 120-142 60-82 (314)
182 PF04977 DivIC: Septum formati 62.1 51 0.0011 23.0 7.4 36 118-154 25-60 (80)
183 PF10498 IFT57: Intra-flagella 61.9 91 0.002 29.3 10.2 45 121-165 298-344 (359)
184 PRK03918 chromosome segregatio 61.7 1.9E+02 0.0042 29.5 14.6 15 95-109 631-645 (880)
185 PF13348 Y_phosphatase3C: Tyro 61.3 18 0.00038 25.1 4.2 33 165-197 35-67 (68)
186 cd00592 HTH_MerR-like Helix-Tu 61.3 41 0.00089 24.8 6.5 40 27-73 1-40 (100)
187 KOG4196 bZIP transcription fac 61.1 89 0.0019 25.5 10.2 13 42-54 30-42 (135)
188 PRK14127 cell division protein 60.8 80 0.0017 24.8 8.5 74 39-133 21-101 (109)
189 KOG0996 Structural maintenance 60.8 1.2E+02 0.0027 32.9 11.8 23 147-169 477-499 (1293)
190 PF10481 CENP-F_N: Cenp-F N-te 60.7 1.2E+02 0.0027 27.7 10.4 61 81-141 23-91 (307)
191 PF05667 DUF812: Protein of un 60.7 1.3E+02 0.0028 30.3 11.5 61 118-182 441-503 (594)
192 PRK10636 putative ABC transpor 60.6 51 0.0011 32.9 8.8 26 119-144 600-625 (638)
193 TIGR01529 argR_whole arginine 60.6 31 0.00067 28.1 6.1 62 12-77 2-65 (146)
194 PF02388 FemAB: FemAB family; 60.4 55 0.0012 30.9 8.6 96 32-142 202-298 (406)
195 PRK10906 DNA-binding transcrip 60.3 18 0.00039 31.9 5.0 55 8-66 2-56 (252)
196 PF05732 RepL: Firmicute plasm 60.2 25 0.00054 29.3 5.6 67 11-83 55-126 (165)
197 PF04375 HemX: HemX; InterPro 60.2 51 0.0011 30.8 8.3 82 64-149 43-125 (372)
198 PHA02562 46 endonuclease subun 60.1 1.7E+02 0.0036 28.2 14.4 96 78-173 215-323 (562)
199 PRK11147 ABC transporter ATPas 59.3 48 0.001 33.0 8.4 21 121-141 572-592 (635)
200 PF04738 Lant_dehyd_C: Lantibi 59.1 43 0.00094 31.7 7.8 163 33-205 8-189 (500)
201 TIGR02431 pcaR_pcaU beta-ketoa 59.0 19 0.00042 31.1 5.0 56 4-62 2-57 (248)
202 PF14197 Cep57_CLD_2: Centroso 59.0 44 0.00095 24.0 6.0 58 87-144 2-60 (69)
203 PF09304 Cortex-I_coil: Cortex 58.9 87 0.0019 24.6 10.1 13 126-138 60-72 (107)
204 PRK00888 ftsB cell division pr 58.8 68 0.0015 24.7 7.5 52 126-188 29-80 (105)
205 PRK15090 DNA-binding transcrip 58.6 26 0.00056 30.6 5.7 54 5-62 8-61 (257)
206 PF12808 Mto2_bdg: Micro-tubul 58.6 35 0.00076 23.4 5.1 45 98-144 5-49 (52)
207 TIGR00293 prefoldin, archaeal 58.4 35 0.00077 26.4 6.0 46 64-109 74-119 (126)
208 PF05483 SCP-1: Synaptonemal c 58.3 2.3E+02 0.005 29.3 13.0 82 78-165 589-670 (786)
209 PRK11546 zraP zinc resistance 58.1 62 0.0014 26.6 7.5 39 73-111 44-82 (143)
210 PRK11179 DNA-binding transcrip 57.7 13 0.00027 30.1 3.4 60 1-66 1-67 (153)
211 PF10168 Nup88: Nuclear pore c 57.7 1.6E+02 0.0034 30.4 11.8 32 78-109 560-591 (717)
212 COG3074 Uncharacterized protei 57.6 73 0.0016 23.3 8.0 27 151-177 48-74 (79)
213 PF00392 GntR: Bacterial regul 57.5 8 0.00017 26.5 1.9 39 25-66 22-62 (64)
214 cd00584 Prefoldin_alpha Prefol 57.4 37 0.0008 26.4 5.9 47 63-109 74-120 (129)
215 COG1196 Smc Chromosome segrega 57.0 2.4E+02 0.0051 30.5 13.5 59 121-179 860-921 (1163)
216 PF05701 WEMBL: Weak chloropla 57.0 92 0.002 30.5 9.8 71 63-145 13-83 (522)
217 PF10168 Nup88: Nuclear pore c 56.9 1.2E+02 0.0026 31.2 10.9 14 125-138 601-614 (717)
218 TIGR00012 L29 ribosomal protei 56.3 61 0.0013 22.0 6.3 46 120-165 8-53 (55)
219 PLN02943 aminoacyl-tRNA ligase 56.2 43 0.00092 35.4 7.7 67 79-145 885-952 (958)
220 COG1378 Predicted transcriptio 56.0 65 0.0014 28.5 7.9 38 39-77 40-77 (247)
221 PF14257 DUF4349: Domain of un 56.0 1.4E+02 0.0031 26.1 10.3 87 43-145 104-190 (262)
222 TIGR01069 mutS2 MutS2 family p 55.9 2E+02 0.0044 29.7 12.4 20 4-23 412-434 (771)
223 PRK10434 srlR DNA-bindng trans 55.8 25 0.00054 31.0 5.2 56 7-66 1-56 (256)
224 PF01047 MarR: MarR family; I 55.6 21 0.00045 23.6 3.7 47 14-64 6-52 (59)
225 PF08280 HTH_Mga: M protein tr 55.6 30 0.00065 23.5 4.5 40 12-55 6-45 (59)
226 PRK04778 septation ring format 55.6 1.2E+02 0.0025 30.0 10.3 59 88-146 280-339 (569)
227 cd07665 BAR_SNX1 The Bin/Amphi 55.5 1.5E+02 0.0032 26.2 12.6 67 114-180 123-190 (234)
228 PRK14165 winged helix-turn-hel 55.5 30 0.00065 30.3 5.5 59 27-89 22-80 (217)
229 PF10212 TTKRSYEDQ: Predicted 55.5 2.2E+02 0.0048 28.3 12.5 60 117-176 455-514 (518)
230 PRK11546 zraP zinc resistance 55.4 1.2E+02 0.0025 25.0 10.2 41 126-166 63-106 (143)
231 TIGR01843 type_I_hlyD type I s 55.3 99 0.0021 28.3 9.3 84 48-145 182-267 (423)
232 KOG4674 Uncharacterized conser 55.3 2.4E+02 0.0053 32.2 13.3 27 140-166 1298-1324(1822)
233 PF08657 DASH_Spc34: DASH comp 55.3 92 0.002 28.0 8.7 43 71-113 173-217 (259)
234 PRK05729 valS valyl-tRNA synth 55.2 42 0.00091 34.9 7.4 66 79-144 807-873 (874)
235 PRK11569 transcriptional repre 55.1 32 0.0007 30.4 5.8 54 6-62 23-76 (274)
236 KOG4643 Uncharacterized coiled 55.1 1.4E+02 0.0031 32.1 10.9 152 11-169 75-249 (1195)
237 COG1438 ArgR Arginine represso 55.0 32 0.0007 28.5 5.3 65 12-83 6-75 (150)
238 cd01279 HTH_HspR-like Helix-Tu 54.9 81 0.0018 23.6 7.2 46 26-80 1-46 (98)
239 KOG0996 Structural maintenance 54.8 2.5E+02 0.0054 30.8 12.8 23 150-172 908-930 (1293)
240 PRK11642 exoribonuclease R; Pr 54.7 21 0.00045 37.1 5.1 51 13-63 21-72 (813)
241 PRK14549 50S ribosomal protein 54.6 74 0.0016 22.7 6.6 47 120-166 15-62 (69)
242 TIGR00606 rad50 rad50. This fa 54.5 2.5E+02 0.0054 30.7 13.3 85 77-161 882-982 (1311)
243 KOG0963 Transcription factor/C 54.4 2.5E+02 0.0054 28.5 12.7 121 78-203 230-359 (629)
244 KOG0981 DNA topoisomerase I [R 54.3 53 0.0012 33.1 7.5 98 82-190 635-737 (759)
245 PRK15178 Vi polysaccharide exp 54.2 2.1E+02 0.0046 27.7 11.7 66 80-145 239-307 (434)
246 PF10458 Val_tRNA-synt_C: Valy 53.9 73 0.0016 22.2 6.7 58 118-175 5-65 (66)
247 cd00089 HR1 Protein kinase C-r 53.7 76 0.0017 22.4 9.1 66 79-145 5-70 (72)
248 PF03961 DUF342: Protein of un 53.7 78 0.0017 30.2 8.6 25 79-103 337-361 (451)
249 TIGR02231 conserved hypothetic 53.6 93 0.002 30.2 9.2 36 75-110 70-105 (525)
250 PF02403 Seryl_tRNA_N: Seryl-t 53.6 87 0.0019 23.6 7.3 57 117-173 36-98 (108)
251 PF06156 DUF972: Protein of un 53.4 1.1E+02 0.0023 23.9 8.6 52 81-145 6-57 (107)
252 PF02646 RmuC: RmuC family; I 53.3 1.4E+02 0.003 27.1 9.8 28 184-211 72-99 (304)
253 PRK10046 dpiA two-component re 53.3 37 0.0008 28.5 5.7 54 5-62 157-210 (225)
254 PRK10225 DNA-binding transcrip 53.2 1.5E+02 0.0032 25.6 11.0 30 39-68 43-73 (257)
255 PF02996 Prefoldin: Prefoldin 53.2 40 0.00087 25.6 5.4 52 57-109 59-110 (120)
256 cd07377 WHTH_GntR Winged helix 53.2 8.7 0.00019 25.5 1.5 33 27-62 26-58 (66)
257 TIGR02404 trehalos_R_Bsub treh 53.2 9.3 0.0002 32.7 2.0 31 39-70 34-64 (233)
258 KOG0971 Microtubule-associated 53.0 2.7E+02 0.0058 29.9 12.4 110 74-183 222-359 (1243)
259 COG1340 Uncharacterized archae 52.6 1.8E+02 0.004 26.7 10.3 23 119-141 78-100 (294)
260 KOG2758 Translation initiation 52.6 1.1E+02 0.0025 28.9 9.0 61 117-194 73-133 (432)
261 TIGR02944 suf_reg_Xantho FeS a 52.4 16 0.00034 28.5 3.1 49 12-63 10-59 (130)
262 PF07926 TPR_MLP1_2: TPR/MLP1/ 52.3 1.2E+02 0.0025 24.1 8.6 27 85-111 61-87 (132)
263 PRK04424 fatty acid biosynthes 52.2 17 0.00037 30.6 3.4 50 7-60 3-52 (185)
264 PF06657 Cep57_MT_bd: Centroso 52.2 92 0.002 22.8 9.5 66 78-144 12-77 (79)
265 PF05443 ROS_MUCR: ROS/MUCR tr 52.1 9.4 0.0002 31.0 1.7 30 174-206 84-113 (132)
266 PF05911 DUF869: Plant protein 52.0 1.3E+02 0.0029 31.2 10.3 31 131-161 190-226 (769)
267 PF14775 NYD-SP28_assoc: Sperm 51.9 31 0.00068 24.1 4.1 26 118-143 34-59 (60)
268 COG2331 Uncharacterized protei 51.9 8.3 0.00018 28.6 1.2 22 45-66 20-41 (82)
269 PRK05892 nucleoside diphosphat 51.9 1.2E+02 0.0027 25.0 8.4 60 83-142 11-72 (158)
270 PRK09039 hypothetical protein; 51.9 2E+02 0.0043 26.7 11.0 13 199-211 257-272 (343)
271 KOG4603 TBP-1 interacting prot 51.9 1.6E+02 0.0034 25.4 9.1 73 85-157 118-196 (201)
272 KOG2760 Vacuolar sorting prote 51.8 18 0.0004 34.6 3.8 60 8-71 364-423 (432)
273 PF08672 APC2: Anaphase promot 51.6 33 0.00071 24.0 4.2 24 39-62 31-54 (60)
274 PF00831 Ribosomal_L29: Riboso 51.4 77 0.0017 21.7 6.5 47 120-166 10-56 (58)
275 PHA02104 hypothetical protein 51.4 8.1 0.00017 28.4 1.1 10 67-76 34-43 (89)
276 TIGR00019 prfA peptide chain r 51.2 1.5E+02 0.0032 28.0 9.7 74 68-143 26-101 (360)
277 PF08651 DASH_Duo1: DASH compl 51.1 65 0.0014 23.7 5.9 49 121-170 2-50 (78)
278 KOG1029 Endocytic adaptor prot 50.9 1.2E+02 0.0025 31.9 9.4 62 80-141 441-503 (1118)
279 KOG2391 Vacuolar sorting prote 50.7 2.2E+02 0.0049 26.9 12.2 21 118-138 254-274 (365)
280 PRK00306 50S ribosomal protein 50.6 86 0.0019 22.0 6.5 47 120-166 12-58 (66)
281 PF04849 HAP1_N: HAP1 N-termin 50.6 1.8E+02 0.0039 26.9 9.9 35 75-109 219-253 (306)
282 PF13463 HTH_27: Winged helix 50.4 31 0.00068 23.2 4.0 46 14-62 6-51 (68)
283 KOG4674 Uncharacterized conser 50.4 2.1E+02 0.0046 32.7 11.9 89 82-170 1173-1292(1822)
284 PF13851 GAS: Growth-arrest sp 50.2 1.6E+02 0.0036 25.2 13.4 55 84-144 28-82 (201)
285 PRK13169 DNA replication intia 50.2 1.2E+02 0.0027 23.7 8.5 53 80-145 5-57 (110)
286 PRK09954 putative kinase; Prov 50.2 22 0.00048 32.4 4.1 47 10-60 2-48 (362)
287 TIGR03752 conj_TIGR03752 integ 50.1 88 0.0019 30.6 8.2 38 74-111 57-94 (472)
288 PF05584 Sulfolobus_pRN: Sulfo 49.8 41 0.0009 24.6 4.6 57 14-75 8-67 (72)
289 PRK09841 cryptic autophosphory 49.7 3E+02 0.0065 28.0 13.4 78 88-166 272-356 (726)
290 KOG4403 Cell surface glycoprot 49.6 2.4E+02 0.0053 27.7 10.9 103 64-169 225-374 (575)
291 cd07627 BAR_Vps5p The Bin/Amph 49.3 1.7E+02 0.0036 25.0 13.6 66 113-178 104-172 (216)
292 PRK11020 hypothetical protein; 49.2 1.2E+02 0.0026 24.1 7.4 50 88-138 3-52 (118)
293 cd01106 HTH_TipAL-Mta Helix-Tu 49.0 1.1E+02 0.0024 22.8 7.9 37 27-70 1-37 (103)
294 PF07989 Microtub_assoc: Micro 48.9 1E+02 0.0022 22.4 8.3 60 81-145 5-64 (75)
295 PF04999 FtsL: Cell division p 48.8 58 0.0013 24.1 5.5 34 119-154 44-77 (97)
296 PF15397 DUF4618: Domain of un 48.4 2.1E+02 0.0045 25.8 12.5 29 82-110 80-108 (258)
297 PF00261 Tropomyosin: Tropomyo 48.4 1.1E+02 0.0023 26.7 7.9 19 147-165 90-108 (237)
298 COG0172 SerS Seryl-tRNA synthe 48.3 1.3E+02 0.0028 29.2 8.9 54 83-138 36-89 (429)
299 PRK09802 DNA-binding transcrip 48.3 99 0.0021 27.5 7.8 54 6-63 12-65 (269)
300 PF03492 Methyltransf_7: SAM d 48.2 11 0.00024 34.8 1.7 36 41-76 198-233 (334)
301 PF07889 DUF1664: Protein of u 48.1 1.4E+02 0.0031 23.9 11.5 35 71-109 28-62 (126)
302 KOG0933 Structural maintenance 48.1 3.9E+02 0.0085 28.9 13.2 32 76-107 780-811 (1174)
303 PTZ00419 valyl-tRNA synthetase 48.0 66 0.0014 34.1 7.6 66 79-144 925-991 (995)
304 PRK10265 chaperone-modulator p 47.9 77 0.0017 24.1 6.2 85 37-145 15-99 (101)
305 PF15290 Syntaphilin: Golgi-lo 47.9 2.3E+02 0.0049 26.1 10.2 64 83-146 75-139 (305)
306 cd00427 Ribosomal_L29_HIP Ribo 47.9 87 0.0019 21.3 6.5 47 120-166 9-55 (57)
307 PF09730 BicD: Microtubule-ass 47.8 3.4E+02 0.0073 28.1 13.1 109 78-190 354-474 (717)
308 PF06008 Laminin_I: Laminin Do 47.5 2E+02 0.0043 25.3 10.6 84 82-165 44-139 (264)
309 PF04880 NUDE_C: NUDE protein, 47.3 39 0.00084 28.5 4.7 44 87-140 4-47 (166)
310 PRK00117 recX recombination re 47.3 35 0.00076 27.5 4.4 48 17-64 16-63 (157)
311 COG4026 Uncharacterized protei 47.0 2.1E+02 0.0045 25.7 9.3 53 120-183 152-204 (290)
312 PF10552 ORF6C: ORF6C domain; 46.8 1.3E+02 0.0029 23.2 7.7 36 123-158 7-45 (116)
313 cd07596 BAR_SNX The Bin/Amphip 46.8 1.6E+02 0.0035 24.1 9.8 52 114-165 107-161 (218)
314 PRK14136 recX recombination re 46.7 28 0.0006 32.2 4.1 56 10-65 160-215 (309)
315 PF10186 Atg14: UV radiation r 46.7 2E+02 0.0042 25.0 13.3 7 193-199 153-159 (302)
316 PF14947 HTH_45: Winged helix- 46.5 58 0.0012 23.3 5.0 27 33-59 23-49 (77)
317 PF10473 CENP-F_leu_zip: Leuci 46.5 1.6E+02 0.0035 24.1 11.9 20 119-138 82-101 (140)
318 PRK09764 DNA-binding transcrip 46.4 14 0.0003 31.9 2.0 30 39-68 39-69 (240)
319 COG0255 RpmC Ribosomal protein 46.4 1.1E+02 0.0024 22.1 6.6 46 120-165 14-59 (69)
320 COG3682 Predicted transcriptio 46.3 37 0.0008 27.3 4.3 61 14-75 9-70 (123)
321 KOG2264 Exostosin EXT1L [Signa 46.3 1E+02 0.0022 31.3 8.0 23 84-106 101-123 (907)
322 PF02082 Rrf2: Transcriptional 46.2 17 0.00037 26.3 2.2 59 15-77 12-73 (83)
323 PF01638 HxlR: HxlR-like helix 46.2 37 0.0008 24.9 4.1 50 25-76 17-68 (90)
324 COG1340 Uncharacterized archae 46.1 2E+02 0.0043 26.5 9.4 19 91-109 21-39 (294)
325 PF04728 LPP: Lipoprotein leuc 46.1 1E+02 0.0022 21.5 7.9 45 125-173 4-48 (56)
326 PRK11169 leucine-responsive tr 45.9 25 0.00055 28.7 3.4 64 6-73 9-80 (164)
327 KOG0804 Cytoplasmic Zn-finger 45.9 1.9E+02 0.0041 28.4 9.5 69 121-189 379-455 (493)
328 COG2188 PhnF Transcriptional r 45.7 13 0.00029 32.2 1.8 31 39-70 41-71 (236)
329 KOG1029 Endocytic adaptor prot 45.7 2E+02 0.0043 30.4 10.1 60 43-109 446-505 (1118)
330 PF12777 MT: Microtubule-bindi 45.6 2.5E+02 0.0053 25.9 10.6 97 85-187 230-329 (344)
331 cd04765 HTH_MlrA-like_sg2 Heli 45.6 1.3E+02 0.0028 22.7 7.9 98 27-140 1-99 (99)
332 PRK09990 DNA-binding transcrip 45.1 2E+02 0.0043 24.6 11.5 30 39-68 41-71 (251)
333 KOG3647 Predicted coiled-coil 45.0 2.5E+02 0.0055 25.8 10.2 61 43-113 103-163 (338)
334 PF11932 DUF3450: Protein of u 44.9 2.1E+02 0.0046 24.9 13.7 26 121-146 74-99 (251)
335 PF14193 DUF4315: Domain of un 44.9 62 0.0014 24.2 5.0 28 84-111 2-29 (83)
336 PF08461 HTH_12: Ribonuclease 44.8 38 0.00082 23.8 3.7 50 15-66 2-53 (66)
337 PF15070 GOLGA2L5: Putative go 44.5 3.5E+02 0.0077 27.4 13.0 93 80-172 33-138 (617)
338 PTZ00446 vacuolar sorting prot 44.5 2.1E+02 0.0045 24.7 12.1 100 82-181 26-141 (191)
339 PRK00461 rpmC 50S ribosomal pr 44.1 1.2E+02 0.0026 22.8 6.5 47 120-166 11-57 (87)
340 KOG0288 WD40 repeat protein Ti 44.0 3.1E+02 0.0068 26.6 11.0 102 78-202 50-152 (459)
341 PRK00409 recombination and DNA 43.9 3.9E+02 0.0085 27.7 12.4 19 5-23 418-439 (782)
342 PRK14900 valS valyl-tRNA synth 43.8 84 0.0018 33.7 7.6 66 80-145 839-905 (1052)
343 KOG1962 B-cell receptor-associ 43.8 1.3E+02 0.0029 26.4 7.6 25 120-144 154-178 (216)
344 PF14282 FlxA: FlxA-like prote 43.5 1.5E+02 0.0032 22.8 7.7 22 83-104 19-40 (106)
345 KOG0161 Myosin class II heavy 43.4 3.8E+02 0.0082 31.0 12.6 49 88-136 1095-1144(1930)
346 KOG0962 DNA repair protein RAD 43.2 4.1E+02 0.0089 29.4 12.4 91 118-214 1056-1157(1294)
347 KOG0977 Nuclear envelope prote 43.2 2E+02 0.0043 28.8 9.6 56 79-134 158-214 (546)
348 TIGR00122 birA_repr_reg BirA b 43.2 67 0.0014 22.1 4.8 45 14-63 3-47 (69)
349 PRK11281 hypothetical protein; 42.9 4.3E+02 0.0093 28.8 12.6 65 79-143 76-147 (1113)
350 PF08172 CASP_C: CASP C termin 42.9 2.2E+02 0.0047 25.4 9.1 80 80-163 3-121 (248)
351 PRK11402 DNA-binding transcrip 42.8 17 0.00036 31.3 2.0 31 39-70 43-73 (241)
352 TIGR01461 greB transcription e 42.7 1E+02 0.0022 25.4 6.5 65 84-148 9-76 (156)
353 PF01316 Arg_repressor: Argini 42.6 72 0.0016 22.9 4.9 64 9-77 3-68 (70)
354 COG1321 TroR Mn-dependent tran 42.5 74 0.0016 26.2 5.7 57 9-69 8-64 (154)
355 PLN02381 valyl-tRNA synthetase 42.2 84 0.0018 33.7 7.3 66 79-144 993-1059(1066)
356 TIGR02325 C_P_lyase_phnF phosp 42.2 17 0.00036 30.9 1.9 34 36-70 39-72 (238)
357 PLN02668 indole-3-acetate carb 42.1 14 0.0003 35.2 1.4 31 46-76 259-289 (386)
358 KOG0994 Extracellular matrix g 41.9 3.5E+02 0.0077 30.0 11.5 91 82-172 1231-1323(1758)
359 PRK05771 V-type ATP synthase s 41.8 3.6E+02 0.0077 27.0 11.4 21 44-64 16-36 (646)
360 cd04776 HTH_GnyR Helix-Turn-He 41.8 87 0.0019 24.3 5.8 30 23-52 33-67 (118)
361 PF10186 Atg14: UV radiation r 41.8 2.3E+02 0.0051 24.5 11.8 34 76-109 56-89 (302)
362 cd01109 HTH_YyaN Helix-Turn-He 41.8 1.5E+02 0.0033 22.4 8.6 94 39-143 10-105 (113)
363 PRK13729 conjugal transfer pil 41.7 1.1E+02 0.0024 29.9 7.5 19 91-109 70-88 (475)
364 TIGR03185 DNA_S_dndD DNA sulfu 41.7 3.7E+02 0.0081 26.9 16.7 48 64-111 361-412 (650)
365 PF13545 HTH_Crp_2: Crp-like h 41.6 20 0.00044 24.8 2.0 28 36-63 35-62 (76)
366 PF05529 Bap31: B-cell recepto 41.5 1.6E+02 0.0035 24.5 7.8 18 125-142 155-172 (192)
367 PF06160 EzrA: Septation ring 41.5 2.8E+02 0.006 27.5 10.4 73 89-161 277-356 (560)
368 PRK10869 recombination and rep 41.5 3.6E+02 0.0079 26.6 13.4 60 120-179 264-326 (553)
369 PRK06798 fliD flagellar cappin 41.4 2.4E+02 0.0053 27.1 9.8 54 83-145 379-432 (440)
370 PF00261 Tropomyosin: Tropomyo 41.4 2.4E+02 0.0052 24.5 11.6 29 149-177 197-225 (237)
371 PF11198 DUF2857: Protein of u 41.2 94 0.002 26.2 6.2 51 147-201 59-115 (180)
372 CHL00154 rpl29 ribosomal prote 41.1 1.3E+02 0.0028 21.4 6.7 47 120-166 15-61 (67)
373 PHA02078 hypothetical protein 41.1 9.9 0.00022 26.2 0.2 27 23-49 18-46 (54)
374 KOG1655 Protein involved in va 41.0 2.5E+02 0.0054 24.6 12.6 57 82-138 25-84 (218)
375 KOG4360 Uncharacterized coiled 40.8 1.3E+02 0.0028 30.0 7.7 56 43-109 197-252 (596)
376 PF15035 Rootletin: Ciliary ro 40.7 2.3E+02 0.0049 24.1 12.4 64 82-145 15-95 (182)
377 PRK03902 manganese transport t 40.4 87 0.0019 24.7 5.7 53 9-65 6-58 (142)
378 PF06810 Phage_GP20: Phage min 40.4 2.1E+02 0.0045 23.5 8.6 31 81-111 18-48 (155)
379 PRK10079 phosphonate metabolis 40.3 23 0.00051 30.4 2.5 31 39-70 45-75 (241)
380 smart00437 TOP1Ac Bacterial DN 40.2 22 0.00047 31.6 2.3 44 24-67 10-54 (259)
381 PF02344 Myc-LZ: Myc leucine z 40.2 90 0.002 19.3 4.4 27 119-145 3-29 (32)
382 PRK10361 DNA recombination pro 40.2 3.7E+02 0.0081 26.4 14.3 87 126-212 142-232 (475)
383 TIGR02018 his_ut_repres histid 40.1 19 0.00041 30.7 1.9 29 39-67 35-64 (230)
384 PF15294 Leu_zip: Leucine zipp 40.1 2.9E+02 0.0064 25.2 11.6 29 81-109 130-158 (278)
385 PF11336 DUF3138: Protein of u 40.0 98 0.0021 30.2 6.7 25 148-172 82-106 (514)
386 TIGR02895 spore_sigI RNA polym 39.7 1.1E+02 0.0024 26.6 6.6 74 119-200 116-189 (218)
387 smart00344 HTH_ASNC helix_turn 39.7 28 0.0006 25.9 2.6 46 11-60 3-48 (108)
388 PF15397 DUF4618: Domain of un 39.3 2.9E+02 0.0063 24.9 12.9 112 81-195 4-127 (258)
389 PRK14999 histidine utilization 39.2 20 0.00044 30.8 2.0 30 39-69 46-75 (241)
390 TIGR03545 conserved hypothetic 39.0 4.1E+02 0.0088 26.5 12.1 22 180-201 254-275 (555)
391 PF05557 MAD: Mitotic checkpoi 38.9 95 0.0021 31.6 6.9 44 122-179 604-647 (722)
392 COG4477 EzrA Negative regulato 38.8 3.2E+02 0.0068 27.4 10.1 88 86-173 277-371 (570)
393 PF12128 DUF3584: Protein of u 38.7 5.5E+02 0.012 27.9 13.3 59 118-176 314-379 (1201)
394 PF10883 DUF2681: Protein of u 38.5 1.1E+02 0.0023 23.2 5.5 51 77-127 24-79 (87)
395 PF07851 TMPIT: TMPIT-like pro 38.1 3.4E+02 0.0074 25.4 11.3 48 129-183 44-95 (330)
396 PRK05287 hypothetical protein; 38.0 1.6E+02 0.0035 26.4 7.5 65 130-203 64-131 (250)
397 PF15070 GOLGA2L5: Putative go 38.0 4.4E+02 0.0096 26.7 12.8 88 81-174 13-105 (617)
398 PF13600 DUF4140: N-terminal d 37.9 1.3E+02 0.0029 22.3 6.1 47 63-109 49-96 (104)
399 PF09032 Siah-Interact_N: Siah 37.9 1.6E+02 0.0035 21.8 6.2 45 90-138 3-47 (79)
400 TIGR00219 mreC rod shape-deter 37.6 80 0.0017 28.5 5.6 10 129-138 96-105 (283)
401 COG1725 Predicted transcriptio 37.5 19 0.0004 29.0 1.3 35 34-69 40-74 (125)
402 PRK10246 exonuclease subunit S 37.4 4.6E+02 0.01 28.0 11.9 96 73-169 774-880 (1047)
403 PF14468 DUF4427: Protein of u 37.4 53 0.0012 26.6 3.8 34 47-80 47-85 (132)
404 smart00035 CLa CLUSTERIN alpha 37.4 1.5E+02 0.0032 26.1 6.9 53 147-200 90-142 (216)
405 PRK01885 greB transcription el 37.4 1.4E+02 0.003 24.6 6.5 65 84-148 11-78 (157)
406 PRK12423 LexA repressor; Provi 37.3 41 0.0009 28.5 3.5 55 11-68 6-65 (202)
407 PRK10698 phage shock protein P 37.2 2.8E+02 0.006 24.1 11.5 79 81-166 104-183 (222)
408 cd04761 HTH_MerR-SF Helix-Turn 37.2 43 0.00094 21.0 2.8 37 27-70 1-37 (49)
409 TIGR01884 cas_HTH CRISPR locus 37.2 94 0.002 26.2 5.7 52 6-63 140-191 (203)
410 KOG0161 Myosin class II heavy 36.9 2.3E+02 0.005 32.7 9.8 67 78-144 1078-1145(1930)
411 cd01109 HTH_YyaN Helix-Turn-He 36.8 1.8E+02 0.0039 22.1 6.8 69 24-106 36-109 (113)
412 PF14662 CCDC155: Coiled-coil 36.6 2.8E+02 0.0061 24.0 13.4 56 121-176 120-178 (193)
413 TIGR02449 conserved hypothetic 36.5 1.6E+02 0.0034 21.1 9.1 59 80-144 4-62 (65)
414 COG4942 Membrane-bound metallo 36.5 4.1E+02 0.0088 25.8 12.3 20 88-107 169-188 (420)
415 PRK15396 murein lipoprotein; P 36.4 1.8E+02 0.0038 21.5 7.3 47 125-175 26-72 (78)
416 COG1730 GIM5 Predicted prefold 36.3 1.2E+02 0.0026 25.0 5.9 37 64-107 82-118 (145)
417 KOG0243 Kinesin-like protein [ 36.2 3.9E+02 0.0083 28.9 10.8 29 118-146 442-470 (1041)
418 PRK05638 threonine synthase; V 36.2 78 0.0017 30.1 5.6 69 7-79 367-436 (442)
419 PRK13879 conjugal transfer pro 36.1 3.2E+02 0.007 24.5 9.1 60 121-180 49-111 (253)
420 COG1349 GlpR Transcriptional r 36.1 43 0.00094 29.5 3.6 51 7-61 1-51 (253)
421 PRK05589 peptide chain release 36.0 2.7E+02 0.0059 25.9 8.8 66 70-137 6-73 (325)
422 PF10234 Cluap1: Clusterin-ass 35.6 3.4E+02 0.0073 24.6 13.7 80 91-176 170-252 (267)
423 TIGR01462 greA transcription e 35.6 1.7E+02 0.0036 23.7 6.7 65 85-149 7-74 (151)
424 COG3096 MukB Uncharacterized p 35.6 5E+02 0.011 27.7 11.1 40 145-184 930-969 (1480)
425 PRK09480 slmA division inhibit 35.5 97 0.0021 24.8 5.4 55 2-78 1-56 (194)
426 PF03002 Somatostatin: Somatos 35.4 19 0.00041 19.4 0.7 12 61-72 2-13 (18)
427 PF07888 CALCOCO1: Calcium bin 35.4 4.7E+02 0.01 26.2 12.0 85 75-165 342-426 (546)
428 PF06698 DUF1192: Protein of u 35.4 66 0.0014 22.6 3.6 29 85-113 23-51 (59)
429 COG4957 Predicted transcriptio 35.4 43 0.00093 27.6 3.1 31 173-206 87-117 (148)
430 KOG0978 E3 ubiquitin ligase in 35.3 4.3E+02 0.0094 27.3 10.7 101 73-173 542-658 (698)
431 PRK11020 hypothetical protein; 35.2 2.1E+02 0.0045 22.8 6.8 44 124-167 5-49 (118)
432 PRK00888 ftsB cell division pr 35.1 1.2E+02 0.0025 23.4 5.4 35 77-111 28-62 (105)
433 TIGR02977 phageshock_pspA phag 34.9 2.9E+02 0.0063 23.7 11.6 43 84-132 107-149 (219)
434 PRK00591 prfA peptide chain re 34.4 4E+02 0.0088 25.1 9.8 75 66-142 23-100 (359)
435 TIGR00498 lexA SOS regulatory 34.3 1E+02 0.0022 25.6 5.4 63 5-73 2-69 (199)
436 COG4985 ABC-type phosphate tra 34.3 3.5E+02 0.0076 24.4 8.8 30 115-144 212-241 (289)
437 KOG3215 Uncharacterized conser 34.2 1.1E+02 0.0023 26.9 5.5 71 87-161 100-183 (222)
438 PRK06330 transcript cleavage f 34.2 3.2E+02 0.007 28.3 9.7 117 24-148 518-640 (718)
439 PRK05431 seryl-tRNA synthetase 34.0 2.2E+02 0.0049 27.1 8.3 58 117-174 35-98 (425)
440 PRK14145 heat shock protein Gr 34.0 3.1E+02 0.0067 23.7 10.4 55 84-144 39-93 (196)
441 COG4565 CitB Response regulato 33.9 1E+02 0.0022 27.3 5.4 55 4-62 152-206 (224)
442 PF11461 RILP: Rab interacting 33.8 92 0.002 22.0 4.2 27 119-145 5-31 (60)
443 PLN03229 acetyl-coenzyme A car 33.3 5.2E+02 0.011 27.0 10.9 40 127-166 669-712 (762)
444 KOG0804 Cytoplasmic Zn-finger 33.3 4.8E+02 0.01 25.7 11.3 13 17-29 260-272 (493)
445 KOG1666 V-SNARE [Intracellular 33.3 2.9E+02 0.0063 24.4 8.0 30 115-144 63-92 (220)
446 cd07664 BAR_SNX2 The Bin/Amphi 33.2 3.4E+02 0.0073 23.9 13.2 63 114-176 123-186 (234)
447 COG1422 Predicted membrane pro 33.0 1.5E+02 0.0033 25.8 6.2 39 124-162 72-111 (201)
448 cd00093 HTH_XRE Helix-turn-hel 32.9 63 0.0014 19.4 3.1 29 174-202 28-56 (58)
449 PF08287 DASH_Spc19: Spc19; I 32.7 2.2E+02 0.0048 23.5 7.0 61 81-142 66-152 (153)
450 PF04740 LXG: LXG domain of WX 32.6 2.9E+02 0.0062 22.9 11.2 83 87-169 103-193 (204)
451 PRK09464 pdhR transcriptional 32.6 2.6E+02 0.0056 23.9 7.9 28 39-66 44-72 (254)
452 COG1724 Predicted RNA binding 32.5 43 0.00093 24.1 2.4 30 41-70 4-33 (66)
453 KOG0964 Structural maintenance 32.5 3.5E+02 0.0077 29.2 9.7 91 75-165 250-344 (1200)
454 PF08826 DMPK_coil: DMPK coile 32.5 1.8E+02 0.0039 20.5 8.1 18 120-137 42-59 (61)
455 PRK10870 transcriptional repre 32.1 2.3E+02 0.0051 23.3 7.2 71 5-80 51-123 (176)
456 TIGR03853 matur_matur probable 32.0 65 0.0014 23.9 3.3 49 3-61 14-62 (77)
457 PF04100 Vps53_N: Vps53-like, 31.8 4.4E+02 0.0096 24.8 10.6 34 149-182 95-131 (383)
458 KOG1962 B-cell receptor-associ 31.8 2.8E+02 0.0062 24.4 7.8 18 150-167 194-211 (216)
459 PF10211 Ax_dynein_light: Axon 31.7 2.6E+02 0.0057 23.7 7.5 11 32-42 46-57 (189)
460 PF04645 DUF603: Protein of un 31.7 2.8E+02 0.006 23.7 7.4 55 85-140 107-161 (181)
461 PRK00226 greA transcription el 31.6 2.1E+02 0.0045 23.2 6.7 66 83-149 10-79 (157)
462 smart00530 HTH_XRE Helix-turn- 31.5 65 0.0014 19.1 3.0 29 174-202 26-54 (56)
463 KOG0018 Structural maintenance 31.5 7.2E+02 0.016 27.1 12.2 89 91-179 396-501 (1141)
464 TIGR00414 serS seryl-tRNA synt 31.5 2.8E+02 0.006 26.4 8.4 61 118-178 38-105 (418)
465 KOG0432 Valyl-tRNA synthetase 31.4 2E+02 0.0044 30.5 7.8 64 81-144 928-992 (995)
466 KOG2391 Vacuolar sorting prote 30.9 3E+02 0.0066 26.0 8.2 17 165-181 262-278 (365)
467 KOG0979 Structural maintenance 30.8 6.2E+02 0.014 27.4 11.2 35 77-111 249-283 (1072)
468 PF11853 DUF3373: Protein of u 30.7 44 0.00095 32.8 2.9 25 84-108 32-56 (489)
469 PRK11014 transcriptional repre 30.6 29 0.00063 27.6 1.4 36 25-63 24-59 (141)
470 PF07072 DUF1342: Protein of u 30.5 2.4E+02 0.0052 24.5 7.2 71 118-203 41-114 (211)
471 PRK15422 septal ring assembly 30.5 2.3E+02 0.005 21.1 10.0 21 155-175 52-72 (79)
472 PF09358 UBA_e1_C: Ubiquitin-a 30.5 39 0.00085 26.8 2.1 31 43-73 42-74 (125)
473 PF05615 THOC7: Tho complex su 30.4 2.7E+02 0.0059 21.9 9.8 66 79-144 42-108 (139)
474 PF02787 CPSase_L_D3: Carbamoy 30.4 2.4E+02 0.0052 22.3 6.6 27 181-207 80-106 (123)
475 TIGR00019 prfA peptide chain r 30.4 4.7E+02 0.01 24.7 10.2 28 146-173 72-99 (360)
476 cd04779 HTH_MerR-like_sg4 Heli 30.3 2.9E+02 0.0062 22.1 9.6 101 27-144 1-101 (134)
477 PRK10244 anti-RssB factor; Pro 30.3 2.5E+02 0.0053 21.4 7.5 63 122-184 8-83 (88)
478 PRK00215 LexA repressor; Valid 30.2 1.2E+02 0.0026 25.3 5.2 58 11-71 4-66 (205)
479 KOG4348 Adaptor protein CMS/SE 30.2 1.8E+02 0.0039 28.6 6.7 104 39-144 497-621 (627)
480 PF10234 Cluap1: Clusterin-ass 30.2 3E+02 0.0066 24.9 8.0 29 83-111 176-204 (267)
481 PF10975 DUF2802: Protein of u 30.1 2.1E+02 0.0045 20.5 6.4 26 124-149 5-30 (70)
482 PF04420 CHD5: CHD5-like prote 30.1 2.4E+02 0.0053 23.1 6.9 53 86-140 36-89 (161)
483 KOG4571 Activating transcripti 30.1 1.8E+02 0.004 26.7 6.5 37 117-164 248-284 (294)
484 KOG2587 RNA polymerase III (C) 30.0 5.7E+02 0.012 25.5 12.7 53 12-68 398-450 (551)
485 COG3661 AguA Alpha-glucuronida 30.0 2.2E+02 0.0049 28.1 7.4 55 131-188 621-676 (684)
486 TIGR02680 conserved hypothetic 29.9 7.4E+02 0.016 27.4 12.2 27 120-146 300-326 (1353)
487 PF03938 OmpH: Outer membrane 29.9 2.8E+02 0.0061 21.9 12.8 90 82-185 42-131 (158)
488 PRK14160 heat shock protein Gr 29.9 3.8E+02 0.0082 23.4 12.4 54 85-144 56-109 (211)
489 PF13863 DUF4200: Domain of un 29.9 2.5E+02 0.0055 21.4 7.8 21 118-138 61-81 (126)
490 PLN02678 seryl-tRNA synthetase 29.8 3E+02 0.0064 26.7 8.3 49 117-166 40-88 (448)
491 PF12252 SidE: Dot/Icm substra 29.6 6E+02 0.013 27.9 10.8 122 56-177 1038-1193(1439)
492 KOG3647 Predicted coiled-coil 29.5 4.5E+02 0.0099 24.2 12.7 87 89-182 111-197 (338)
493 TIGR01000 bacteriocin_acc bact 29.4 3.7E+02 0.008 25.6 8.9 67 74-145 234-312 (457)
494 PF09012 FeoC: FeoC like trans 29.3 51 0.0011 22.9 2.4 50 14-67 3-52 (69)
495 KOG0964 Structural maintenance 29.2 6.3E+02 0.014 27.5 10.9 116 79-203 414-531 (1200)
496 COG3074 Uncharacterized protei 29.2 2.3E+02 0.005 20.8 9.9 69 92-177 6-74 (79)
497 PRK00591 prfA peptide chain re 29.1 5E+02 0.011 24.5 10.3 95 80-176 3-102 (359)
498 KOG3990 Uncharacterized conser 29.1 3.1E+02 0.0066 25.0 7.6 72 77-148 226-298 (305)
499 TIGR02680 conserved hypothetic 29.1 7.3E+02 0.016 27.5 12.0 102 76-177 269-382 (1353)
500 PF07888 CALCOCO1: Calcium bin 29.0 6E+02 0.013 25.5 14.1 91 81-181 141-231 (546)
No 1
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=100.00 E-value=5.1e-72 Score=474.78 Aligned_cols=187 Identities=53% Similarity=0.866 Sum_probs=184.7
Q ss_pred HHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHH
Q 027291 16 ILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQS 94 (225)
Q Consensus 16 il~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~ 94 (225)
||+|||++++|||||||||+||| +||++|+||||||+|||||||++||||||||||||||++.+.+++.+++|+++++.
T Consensus 1 il~~f~e~~~~y~lKELEK~~pK~~gI~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~ 80 (188)
T PF03962_consen 1 ILEIFHESKDFYTLKELEKLAPKEKGIVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEE 80 (188)
T ss_pred ChHHHhhcCCcccHHHHHHHcccccCCchhhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 027291 95 SKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFT 174 (225)
Q Consensus 95 ~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~ 174 (225)
++.++++++.+|+.++.+|+++++|..+|+++++|+.++++|+++|++|+.+||+.|+++++++..++++|||||||||+
T Consensus 81 ~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~ 160 (188)
T PF03962_consen 81 LEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFS 160 (188)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHhhcCCCCCccc
Q 027291 175 LQQWCSNNFPQAKEELEQMYKDVGIPEDFDY 205 (225)
Q Consensus 175 l~~~~~kk~~~~~~~~~~l~~~fgIp~d~dy 205 (225)
|++||+++|||++++ |+++||||+||||
T Consensus 161 l~~~~~~k~~~~~~~---i~k~f~Ip~d~dy 188 (188)
T PF03962_consen 161 LKSYLKKKFGMDEED---IRKEFGIPEDFDY 188 (188)
T ss_pred HHHHHHHhcCCCHHH---HHHHcCCccccCC
Confidence 999999999999999 5679999999998
No 2
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=100.00 E-value=7.1e-68 Score=440.58 Aligned_cols=202 Identities=46% Similarity=0.704 Sum_probs=197.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhH
Q 027291 2 SKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQL 81 (225)
Q Consensus 2 m~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~ 81 (225)
|++| ||.+|||.+|+++||++++||.||||||++||+||+.|+||||||+|||||+|.+||||||||||||||++...+
T Consensus 1 m~~k-ls~~ekr~~l~eIf~eskDff~LkelEKlG~kKgIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ 79 (203)
T KOG3433|consen 1 MTVK-LSSDEKRMILLEIFQESKDFFQLKELEKLGSKKGIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDR 79 (203)
T ss_pred CCcc-cchHHHHHHHHHHHHhhHhHHHHHHHHHhCCccceehhHHHHHHHHHhccchHHHHHhcccccccccchHHHHHH
Confidence 5666 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDERE-EALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEV 160 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~-~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~ 160 (225)
...+..|+++++...++...+.+.++..+.+|+.+++|+ ++-.++..|++.++.++.++.++.+|||..++.+....+.
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~ 159 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKT 159 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 8888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhcCCCCCccccc
Q 027291 161 AHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDVGIPEDFDYLE 207 (225)
Q Consensus 161 ~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~fgIp~d~dy~e 207 (225)
+.+||||||||||+|++||+++||+++.+ ||++||||+||||+.
T Consensus 160 ~~eaanrwtDnI~il~dy~~rkf~~e~nq---i~~~fgIPed~d~iq 203 (203)
T KOG3433|consen 160 MAEAANRWTDNIFILIDYLYRKFGLEPNQ---IRKEFGIPEDFDYIQ 203 (203)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCCHHH---HhHhcCCCccccccC
Confidence 99999999999999999999999999988 678999999999984
No 3
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=100.00 E-value=1.2e-62 Score=408.00 Aligned_cols=204 Identities=32% Similarity=0.466 Sum_probs=187.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhH
Q 027291 2 SKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQL 81 (225)
Q Consensus 2 m~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~ 81 (225)
|||+|||.+|||.|+++|||.|++||+|||+||+++|+||+.|+|||+||+|||||+|.+||||||||||||||++.+.+
T Consensus 1 M~~~~ls~~eKrr~L~aI~~~SKdFFqLkEvEkLGSKK~IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~~~qk~ 80 (209)
T COG5124 1 MPPKGLSLAEKRRRLEAIFHDSKDFFQLKEVEKLGSKKQIVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQTLQKL 80 (209)
T ss_pred CCCccccHHHHHHHHHHHHhccHHHHHHHHHHHhccccccHHHHHHHHHHHHhhcCceeeeeeccceeEEecchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcH-HHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGRE--ESD-EREEALEELKAV-ELKHIELKDEMGQYADNDPAAFEAMKNA 157 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~--~~~-eR~~ll~~l~~L-~~~~~~l~~el~~~~~~Dp~~i~~~k~~ 157 (225)
...+..|+++++++.+.++.+.+.|+.+++.|. -|+ +|...-..|.++ +.+...++.+|.++..++|.+.+.++.+
T Consensus 81 ~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~~r~k~~Te~~~n~~~~~Ll~~~k~eqd~~k~~l~~l~~~~pi~~d~~~~~ 160 (209)
T COG5124 81 YDSSELLKKKIQEVKQDIATYKEEIDKEKATRRKKFTEGQKNYNREALLEKRKKEQDEIKKKLNSLQKIEPIRWDAAKIQ 160 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhccccccCchhHHHHhhh
Confidence 999999999999999999999999999997652 333 555555444444 4566667779999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhcCCCCCcccccc
Q 027291 158 IEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDVGIPEDFDYLEL 208 (225)
Q Consensus 158 ~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~fgIp~d~dy~e~ 208 (225)
.+..++++|+|||||++|++|+|++|++++++ ||++||||+||||+.+
T Consensus 161 ~kk~~~~~n~~tDnI~ilidy~c~kf~~~~~q---ir~~fgIPedld~~q~ 208 (209)
T COG5124 161 EKKKKVHLNKTTDNIEILIDYLCKKFFLKPEQ---IRKEFGIPEDLDEFQE 208 (209)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHcCCCHHH---HHHhcCCCcchhhhcc
Confidence 99999999999999999999999999999998 6789999999999863
No 4
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=98.67 E-value=4e-06 Score=69.77 Aligned_cols=144 Identities=19% Similarity=0.254 Sum_probs=114.7
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccc-------hhhhhHHHHHH
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPS-------CAGNQLRNVYR 86 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps-------~~~~~~~~~~~ 86 (225)
..|++||....-+|+.-||---... +|.=..|--+|.+||.+|.|.+-=+|-..+||+-.+ .....+...+.
T Consensus 4 ~~Il~y~~~qNRPys~~di~~nL~~-~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~ 82 (169)
T PF07106_consen 4 DAILEYMKEQNRPYSAQDIFDNLHN-KVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIK 82 (169)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHh-hccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHH
Confidence 5799999999999999999887776 666677788999999999999999999999998633 45666777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CHHHHHHHHHHHHHHH
Q 027291 87 KLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADN----DPAAFEAMKNAIEVAH 162 (225)
Q Consensus 87 ~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~----Dp~~i~~~k~~~~~~k 162 (225)
.|++++..++..+..++..+......- | =.++...+.+|+.++..+...|..+... +|+.++++......+.
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~--t--~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~ 158 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEP--T--NEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWR 158 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--C--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 888888888888888888887776532 2 2357777888999999999999999875 5666666555544443
No 5
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=97.48 E-value=0.038 Score=46.78 Aligned_cols=175 Identities=14% Similarity=0.212 Sum_probs=119.5
Q ss_pred HHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEc----ccc---hhhhhHHHHH
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWS----LPS---CAGNQLRNVY 85 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWs----Fps---~~~~~~~~~~ 85 (225)
..+|.++++..-+|+-.|.=--..+ . .-.-.|-..|.+|-+-|.|..-=-|-+-+|.+ |.. .....+.-++
T Consensus 10 ~ivl~~~~eqNrP~ssq~v~~~lq~e~-lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i 88 (201)
T KOG4603|consen 10 GIVLRYLQEQNRPYSSQDVFGNLQREH-LGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKI 88 (201)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHh-ccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHH
Confidence 4689999999999999887666666 2 22567889999999999999999999999986 333 5667777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CHHHHHHHHHHH---
Q 027291 86 RKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADN----DPAAFEAMKNAI--- 158 (225)
Q Consensus 86 ~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~----Dp~~i~~~k~~~--- 158 (225)
..|++++.++.+.+...+..|..+...- .-.++-++.++|.++++.-++.|.++... .|+..+...+.-
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s~L----t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~ 164 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSSAL----TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKY 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 8888888888888887777777664422 12345566777788888888888887764 565544433332
Q ss_pred -HHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhcCCC
Q 027291 159 -EVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDVGIP 200 (225)
Q Consensus 159 -~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~fgIp 200 (225)
..++..-..++| |..-+..-.+++.++ +..++||.
T Consensus 165 ~~~wrk~krmf~e----i~d~~~e~~pk~kse---l~eelGIE 200 (201)
T KOG4603|consen 165 CKEWRKRKRMFRE----IIDKLLEGLPKKKSE---LYEELGIE 200 (201)
T ss_pred HHHHHHHHHHHHH----HHHHHHcCCcchHHH---HHHHhCcC
Confidence 222222223333 222334455666655 67789884
No 6
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=96.99 E-value=0.0014 Score=47.02 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=42.3
Q ss_pred HHHHHHHHhh---ccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 13 RGKILEIFYE---SQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 13 r~ril~~f~e---~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
++.|++|+.. +++=|-+|||.|+.|..+ +..||-++..||.+|.+.-==-||+.+|
T Consensus 3 K~~Ile~L~~k~~~KskfYfkD~~k~~pd~k--~R~vKKi~~~LV~Eg~l~yWSSGSTTmY 61 (67)
T PF08679_consen 3 KQKILEFLEAKKKKKSKFYFKDFYKAFPDAK--PREVKKIVNELVNEGKLEYWSSGSTTMY 61 (67)
T ss_dssp HHHHHHHHSSCCCHSS-EEHHHHHHH-TTS---HHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHCCCcC--HHHHHHHHHHHHhhCeEEEEcCCCcEEe
Confidence 5789999883 478888999999999855 8999999999999998874344444433
No 7
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.016 Score=49.47 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=36.3
Q ss_pred hhcHHHHHHHhhh-cCccccccccce-eeEEcccchhhhhHHH
Q 027291 43 TQSVKDVVQSLVD-DDLVLKDKIGTS-VYFWSLPSCAGNQLRN 83 (225)
Q Consensus 43 ~~~VKdvlQ~LVD-DglV~~EKiGss-N~YWsFps~~~~~~~~ 83 (225)
-|.+.++++...| ++|..+||||+- ++||+|-.+..+.+-.
T Consensus 11 r~~l~eIf~eskDff~LkelEKlG~kKgIv~~tvKdvLQsLvD 53 (203)
T KOG3433|consen 11 RMILLEIFQESKDFFQLKELEKLGSKKGIVWQTVKDVLQSLVD 53 (203)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHhCCccceehhHHHHHHHHHhc
Confidence 5789999999999 799999999999 9999999887766543
No 8
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=95.89 E-value=0.012 Score=41.81 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=46.2
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccccee-eEEcccc
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSV-YFWSLPS 75 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN-~YWsFps 75 (225)
+..||+|+...+...+=-|+-.. .||+..+|.=+|+.|.++|.|...+.|-+. -||-+-|
T Consensus 2 ke~Il~~i~~~~~p~~T~eiA~~---~gls~~~aR~yL~~Le~eG~V~~~~~~rG~~~~W~l~~ 62 (62)
T PF04703_consen 2 KEKILEYIKEQNGPLKTREIADA---LGLSIYQARYYLEKLEKEGKVERSPVRRGKSTYWRLNS 62 (62)
T ss_dssp HHCHHHHHHHHTS-EEHHHHHHH---HTS-HHHHHHHHHHHHHCTSEEEES-SSSSS-EEEES-
T ss_pred cHHHHHHHHHcCCCCCHHHHHHH---hCCCHHHHHHHHHHHHHCCCEEEecCCCCcceeeeecC
Confidence 36799999998888888887554 599999999999999999999998885554 4898754
No 9
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=95.50 E-value=0.075 Score=41.24 Aligned_cols=63 Identities=24% Similarity=0.425 Sum_probs=55.5
Q ss_pred HHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchh
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCA 77 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~ 77 (225)
..|++++-+... =|.+||-..+|. .++...||.=+|..|++-|+|..++.|..++|..-=+..
T Consensus 6 ~~IM~~lW~~~~-~t~~eI~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~~~gr~~~Y~p~is~~ 69 (115)
T PF03965_consen 6 LEIMEILWESGE-ATVREIHEALPEERSWAYSTVQTLLNRLVEKGFLTREKIGRAYVYSPLISRE 69 (115)
T ss_dssp HHHHHHHHHHSS-EEHHHHHHHHCTTSS--HHHHHHHHHHHHHTTSEEEEEETTCEEEEESSSHH
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHhccccchhHHHHHHHHHHhCCceeEeecCCceEEEeCCcHH
Confidence 468999999988 899999999999 799999999999999999999999999999998776654
No 10
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=95.40 E-value=0.015 Score=44.44 Aligned_cols=60 Identities=23% Similarity=0.455 Sum_probs=39.2
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc-----cccceeeEEcccch
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD-----KIGTSVYFWSLPSC 76 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E-----KiGssN~YWsFps~ 76 (225)
-.+|++++...+.. .| |-+|...|+.+..|.-+|..|-++|+|... .-|...|||.+...
T Consensus 15 ~~~Il~~L~~~~~l---~d-e~la~~~~l~~~~vRkiL~~L~~~~lv~~~~~~d~~~~~~~~yw~i~~~ 79 (105)
T PF02002_consen 15 AVRILDALLRKGEL---TD-EDLAKKLGLKPKEVRKILYKLYEDGLVSYRRRKDDERGWTRYYWYIDYD 79 (105)
T ss_dssp THHHHHHHHHH--B----H-HHHHHTT-S-HHHHHHHHHHHHHHSS-EEEEE--------EEEEE-THH
T ss_pred HHHHHHHHHHcCCc---CH-HHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEEEcCCCcEEEEEEEEcHH
Confidence 35788888766543 33 667777899999999999999999999665 45888999999654
No 11
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=95.00 E-value=0.053 Score=41.61 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccce-eeEEc
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTS-VYFWS 72 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGss-N~YWs 72 (225)
-|..||++|.+....+|..||-..+.+ .+|+..||==.|+.|++.|+|+.-..|.+ ++|-.
T Consensus 2 qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y~~ 65 (116)
T cd07153 2 QRLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYEL 65 (116)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCceEEEe
Confidence 378899999999999999999877766 57899999999999999999998888665 55543
No 12
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=94.69 E-value=0.044 Score=42.56 Aligned_cols=70 Identities=24% Similarity=0.273 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
+|+-.-.-|..||++|.+....+|..||-+.+.+ ..|+..||=-.|..|++.|+|..=-.|....+..+.
T Consensus 2 ~glr~T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~ 73 (120)
T PF01475_consen 2 AGLRLTPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGDGESRYELS 73 (120)
T ss_dssp TTHHHHHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEES
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCCCcceEeec
Confidence 4555666789999999999999999999987766 578899999999999999999988777555555554
No 13
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=94.53 E-value=0.14 Score=36.47 Aligned_cols=53 Identities=30% Similarity=0.274 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhhccC-ccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 7 LSLEEKRGKILEIFYESQD-FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~-~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
.+.++-+.+||.+|.+... -++.+||=+.+ ||...+|.-+|..|..+|+|..+
T Consensus 2 ~~~~~~~~~IL~~L~~~g~~~~ta~eLa~~l---gl~~~~v~r~L~~L~~~G~V~~~ 55 (68)
T smart00550 2 LTQDSLEEKILEFLENSGDETSTALQLAKNL---GLPKKEVNRVLYSLEKKGKVCKQ 55 (68)
T ss_pred CCchHHHHHHHHHHHHCCCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEec
Confidence 3566778999999999977 49999986654 99999999999999999999764
No 14
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=94.51 E-value=0.23 Score=33.60 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccc
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPS 75 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps 75 (225)
...+..|+.++.... .+..||.+.. ||...+|.-.|..|++.|+|.....| ...||++..
T Consensus 6 ~~~~~~il~~l~~~~--~~~~ei~~~~---~i~~~~i~~~l~~L~~~g~i~~~~~~-~~~~~~~~~ 65 (78)
T cd00090 6 DPTRLRILRLLLEGP--LTVSELAERL---GLSQSTVSRHLKKLEEAGLVESRREG-RRVYYSLTD 65 (78)
T ss_pred ChHHHHHHHHHHHCC--cCHHHHHHHH---CcCHhHHHHHHHHHHHCCCeEEEEec-cEEEEEeCC
Confidence 356678888877765 8888876655 78999999999999999999998877 456677764
No 15
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=94.44 E-value=0.11 Score=33.94 Aligned_cols=47 Identities=26% Similarity=0.370 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL 60 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~ 60 (225)
++.+.+||.++++.+. .|.+||-+. .|++..+|..+|+.|+++|+|.
T Consensus 2 ~~~~~~Il~~l~~~~~-~t~~ela~~---~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 2 DETQRKILNYLRENPR-ITQKELAEK---LGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp -HHHHHHHHHHHHCTT-S-HHHHHHH---HTS-HHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHHcCC-CCHHHHHHH---hCCCHHHHHHHHHHHHHCcCcC
Confidence 4678899999999766 788887554 5899999999999999999984
No 16
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=94.43 E-value=0.12 Score=43.66 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc-----cccceeeEEcccchh
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD-----KIGTSVYFWSLPSCA 77 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E-----KiGssN~YWsFps~~ 77 (225)
+...+||..+-.+. .-|-.||-.. -||+.+.|.-+|+.|.++|||... ..|--.|||++....
T Consensus 22 ~~~~~Vl~~L~~~g-~~tdeeLA~~---Lgi~~~~VRk~L~~L~e~gLv~~~r~r~~~~Gr~~y~w~l~~~~ 89 (178)
T PRK06266 22 EEGFEVLKALIKKG-EVTDEEIAEQ---TGIKLNTVRKILYKLYDARLADYKREKDEETNWYTYTWKPELEK 89 (178)
T ss_pred ccHhHHHHHHHHcC-CcCHHHHHHH---HCCCHHHHHHHHHHHHHCCCeEEeeeeccCCCcEEEEEEeCHHH
Confidence 44567777777655 3455555444 599999999999999999999832 357789999997543
No 17
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.10 E-value=0.85 Score=47.98 Aligned_cols=119 Identities=18% Similarity=0.288 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------C---H
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKG-REESDEREEALEELKAVELKHIELKDEMGQYADN--------D---P 148 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~-r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~--------D---p 148 (225)
++++++.|+.+++.++..+..|..+++..+.. +...+++.....++..|...+.....+|..++++ + |
T Consensus 399 ~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~ 478 (1074)
T KOG0250|consen 399 RENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMP 478 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhH
Confidence 45555556666666666666666555555442 3334455556666777777777666666655543 3 3
Q ss_pred HHHHHHHHHHHH--------------HHHHHHhhhhhHHHHHHHHHhhCC----CCHHHHHHHHhhcCCCC
Q 027291 149 AAFEAMKNAIEV--------------AHAAANRWTDNIFTLQQWCSNNFP----QAKEELEQMYKDVGIPE 201 (225)
Q Consensus 149 ~~i~~~k~~~~~--------------~k~aanrwTDNI~~l~~~~~kk~~----~~~~~~~~l~~~fgIp~ 201 (225)
+.+..+...... +++. +|+.-|.....-|-+-|- -|...+..+-+.++||.
T Consensus 479 ~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~--KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~ 547 (1074)
T KOG0250|consen 479 QLLRAIERRKRRFQTPPKGPLGKYVTLKEP--KWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPG 547 (1074)
T ss_pred HHHHHHHHHHhcCCCCCCCCccceeEecCc--HHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCC
Confidence 444443333333 2333 899999988888887773 35666777888999995
No 18
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=93.93 E-value=0.13 Score=34.02 Aligned_cols=51 Identities=24% Similarity=0.370 Sum_probs=38.9
Q ss_pred HHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEE
Q 027291 16 ILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFW 71 (225)
Q Consensus 16 il~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YW 71 (225)
|+.++. ...-++.||.+.. |++..+|...|..|+++|+|..++.|...+|.
T Consensus 2 il~~l~--~~~~~~~~i~~~l---~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~ 52 (66)
T smart00418 2 ILKLLA--EGELCVCELAEIL---GLSQSTVSHHLKKLREAGLVESRREGKRVYYS 52 (66)
T ss_pred HHHHhh--cCCccHHHHHHHH---CCCHHHHHHHHHHHHHCCCeeeeecCCEEEEE
Confidence 566665 3445666665554 79999999999999999999988877765554
No 19
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.13 E-value=1.7 Score=40.28 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 027291 88 LESDLQSSKKRHTELVEQCNALKKG------REESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVA 161 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~~k~~------r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~ 161 (225)
|.+.+.+++..+.-|+.++...+.+ |....+|..++.+++.+..++.+|+.++..+-+ ..+++..+-...
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD----EkeEl~~ERD~y 166 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD----EKEELVTERDAY 166 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3333333333344444444444332 345589999999999999999999998887762 344455555555
Q ss_pred HHHHHhh
Q 027291 162 HAAANRW 168 (225)
Q Consensus 162 k~aanrw 168 (225)
+.-|+|-
T Consensus 167 k~K~~RL 173 (319)
T PF09789_consen 167 KCKAHRL 173 (319)
T ss_pred HHHHHHH
Confidence 5555555
No 20
>PRK09462 fur ferric uptake regulator; Provisional
Probab=92.77 E-value=0.15 Score=41.24 Aligned_cols=70 Identities=23% Similarity=0.249 Sum_probs=57.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhc-cCccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccceeeEEc
Q 027291 3 KKRGLSLEEKRGKILEIFYES-QDFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWS 72 (225)
Q Consensus 3 ~~KglS~eEKr~ril~~f~e~-~~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWs 72 (225)
+.+|+-.-..|..||++|.+. ...+|..||-..+.+ .+|...||=-.|..|++.|+|+.=..|.+..+.-
T Consensus 9 ~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~~~~~~~~y~ 81 (148)
T PRK09462 9 KKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFE 81 (148)
T ss_pred HHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCcEEEE
Confidence 346777778899999999986 579999999887766 6788999999999999999998766655544433
No 21
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=91.76 E-value=1 Score=36.02 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=52.4
Q ss_pred HHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchh
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCA 77 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~ 77 (225)
..|+.+|-.... -+.+||-..++. .|+...||.=+|.-|++-|+|...|.|...+|+.-=+..
T Consensus 7 ~~VM~vlW~~~~-~t~~eI~~~l~~~~~~~~tTv~T~L~rL~~KG~v~~~k~gr~~~Y~p~vs~e 70 (130)
T TIGR02698 7 WEVMRVVWTLGE-TTSRDIIRILAEKKDWSDSTIKTLLGRLVDKGCLTTEKEGRKFIYTALVSED 70 (130)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHhhccCCcHHHHHHHHHHHHHCCceeeecCCCcEEEEecCCHH
Confidence 357888876665 488998887777 899999999999999999999999999998888655543
No 22
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=91.67 E-value=0.35 Score=33.22 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
.-|.+||.++ ......+..||-..+ ||...+|--.|+.|.+-|+|.+.+-|
T Consensus 10 p~R~~Il~~L-~~~~~~t~~ela~~l---~~~~~t~s~hL~~L~~aGli~~~~~g 60 (61)
T PF12840_consen 10 PTRLRILRLL-ASNGPMTVSELAEEL---GISQSTVSYHLKKLEEAGLIEVEREG 60 (61)
T ss_dssp HHHHHHHHHH-HHCSTBEHHHHHHHH---TS-HHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHH-hcCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEEeccC
Confidence 4678899999 556677888877666 89999999999999999999998876
No 23
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=91.52 E-value=0.27 Score=40.10 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccce
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTS 67 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGss 67 (225)
.+|+-+-..|..||++|.++.+..+-.||=..+.+ .+|+.-||=-.|..|++-|+|+.=-.+.+
T Consensus 14 ~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~~~~~ 79 (145)
T COG0735 14 EAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLEFEGG 79 (145)
T ss_pred HcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46888888899999999999999999999888887 78999999999999999999998888665
No 24
>PRK06474 hypothetical protein; Provisional
Probab=91.34 E-value=3.8 Score=34.43 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc---c-ceeeEEcccchh
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI---G-TSVYFWSLPSCA 77 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi---G-ssN~YWsFps~~ 77 (225)
..-|.+||+++.......|..||-..++ +|...||==.|..|++.|+|++.+- | ..--||....+.
T Consensus 10 ~p~R~~Il~~L~~~~~~~ta~el~~~l~--~is~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~ 79 (178)
T PRK06474 10 HPVRMKICQVLMRNKEGLTPLELVKILK--DVPQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEED 79 (178)
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHhc--CCCHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccce
Confidence 3468999999999877799999987765 6778899999999999999998654 3 333455544443
No 25
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.20 E-value=5.9 Score=31.58 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAHAA 164 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~a 164 (225)
.....++..|+.+++.|+..+...-.. -.+.+++++.++...|+-
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 344555666677777776665554432 357788888888877764
No 26
>PTZ00464 SNF-7-like protein; Provisional
Probab=91.13 E-value=6.3 Score=34.35 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCc----HHHH-HHHHHHHHHHHHHHHHHHHHHHHhh----
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKK----GREES----DERE-EALEELKAVELKHIELKDEMGQYAD---- 145 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~----~r~~~----~eR~-~ll~~l~~L~~~~~~l~~el~~~~~---- 145 (225)
...+..+..+...+..+.+++..+...+..++. +|..+ -.|. .+|.+..-++.++.++...+..+..
T Consensus 14 ~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ 93 (211)
T PTZ00464 14 PTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFT 93 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666655554432 33211 1122 3555555566655555555444432
Q ss_pred -----CCHHHHHHHHHHHHHHHHHH
Q 027291 146 -----NDPAAFEAMKNAIEVAHAAA 165 (225)
Q Consensus 146 -----~Dp~~i~~~k~~~~~~k~aa 165 (225)
.+-+.+..|+.....++..-
T Consensus 94 ie~a~~~~~vv~amk~g~kaLK~~~ 118 (211)
T PTZ00464 94 TESVKDTKVQVDAMKQAAKTLKKQF 118 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14556666666666555543
No 27
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.80 E-value=11 Score=33.45 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNALKKG---REESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKN 156 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~---r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~ 156 (225)
.++..++.++.++..++..+.++.+++...... -.+..+..+|-.++..++.+...|..++..+. +.++.+..
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~----~~~~~l~~ 124 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELM----EEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 344444445555555555555555554443321 12333455666666666666666666655544 23444555
Q ss_pred HHHHHHHHHHhhhhhHHHHHHH
Q 027291 157 AIEVAHAAANRWTDNIFTLQQW 178 (225)
Q Consensus 157 ~~~~~k~aanrwTDNI~~l~~~ 178 (225)
++..++.+..+--.|+..+..=
T Consensus 125 ~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 125 EIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544444444433
No 28
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=90.64 E-value=0.51 Score=39.12 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=42.2
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc-----cccccceeeEEcccch
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL-----KDKIGTSVYFWSLPSC 76 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~-----~EKiGssN~YWsFps~ 76 (225)
-.|++.+-.+. .-|--|| |-.-||...+|.-+|..|.++|||. .+.-|-..|||.+...
T Consensus 17 v~Vl~aL~~~~-~~tdEeL---a~~Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~ 80 (158)
T TIGR00373 17 GLVLFSLGIKG-EFTDEEI---SLELGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYE 80 (158)
T ss_pred HHHHHHHhccC-CCCHHHH---HHHHCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHH
Confidence 34556555444 3444444 4445999999999999999999993 3345889999988643
No 29
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=90.60 E-value=0.44 Score=31.76 Aligned_cols=49 Identities=31% Similarity=0.438 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
+|--+||++|.++....++.||-+. .|+..-+|--+|+.|++.|+|..+
T Consensus 3 ~ral~iL~~l~~~~~~~t~~eia~~---~gl~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 3 ERALRILEALAESGGPLTLSEIARA---LGLPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHHHHCHHCTBSCEEHHHHHHH---HTS-HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCcCeecC
Confidence 4678899999999999999998655 588999999999999999999754
No 30
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=90.47 E-value=3.3 Score=36.22 Aligned_cols=50 Identities=26% Similarity=0.332 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCcccc--ccccc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLK--DKIGT 66 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~--EKiGs 66 (225)
+=|.+||.++.... +|.+ .++. -|+.++.|=+.|+.|.+.|||.+ ||+-.
T Consensus 15 etRR~Il~lLt~~p-~yvs-----EiS~~lgvsqkAVl~HL~~LE~AGlveS~ie~~~R 67 (217)
T COG1777 15 ETRRRILQLLTRRP-CYVS-----EISRELGVSQKAVLKHLRILERAGLVESRIEKIPR 67 (217)
T ss_pred cHHHHHHHHHhcCc-hHHH-----HHHhhcCcCHHHHHHHHHHHHHcCCchhhcccccc
Confidence 35789999999998 7765 3566 79999999999999999999998 55543
No 31
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=89.79 E-value=1.2 Score=32.24 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.-++...|+++|.......++.||-... ||...+|--+|+.|++.|+|..+.
T Consensus 3 ~~~r~~~Il~~l~~~~~~~t~~~ia~~l---~i~~~tv~r~l~~L~~~g~l~~~~ 54 (91)
T smart00346 3 SLERGLAVLRALAEEPGGLTLAELAERL---GLSKSTAHRLLNTLQELGYVEQDG 54 (91)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHh---CCCHHHHHHHHHHHHHCCCeeecC
Confidence 3467889999999986789999988777 899999999999999999998763
No 32
>PF05158 RNA_pol_Rpc34: RNA polymerase Rpc34 subunit; InterPro: IPR007832 The family comprises a subunit specific to RNA Pol III, the tRNA specific polymerase. The C34 subunit of Saccharomyces cerevisiae RNA Pol III is part of a subcomplex of three subunits which have no counterpart in the other two nuclear RNA polymerases. This subunit interacts with TFIIIB70 and therefore participates in Pol III recruitment [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2DK8_A 2DK5_A 2YU3_A.
Probab=89.72 E-value=0.64 Score=42.99 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhhc--cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 8 SLEEKRGKILEIFYES--QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 8 S~eEKr~ril~~f~e~--~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
++.+-..+|++++++. ..-|+.+||++..|. .....+-.+||.|++.|++..=| +.+.+.|...+....
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~--~~~~~~~~~in~Ll~~~~~~~~~-~~~~l~~~~~~~~~a 76 (327)
T PF05158_consen 6 KLSELEKKLLELCRENPSPKGFSQEDLQQLIPG--LDLQELVKAINELLSSGLLKLLK-KGGGLSYKAVSEEEA 76 (327)
T ss_dssp -HHHHHHHHHHHHHH---SS-EEHHHHHHH-TT--S-HHHHHHHHHHHHHHTSEEEEE--SSSEEEEE--SSS-
T ss_pred hHHHHHHHHHHHHHHhcCCCCcCHHHHHhhcCC--CCHHHHHHHHHHHHhCCCEEEEE-cCCEEEEEEeCHHHH
Confidence 5677889999999998 999999999999775 55788899999999999999999 555588887755443
No 33
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=89.60 E-value=1.2 Score=37.74 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=51.4
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc----cccceeeEEcccchhhhh
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD----KIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E----KiGssN~YWsFps~~~~~ 80 (225)
|.+||..+..... -+..||=+.. ||++++|--.|+.|+++|+|... ..|--.++|+........
T Consensus 3 r~~IL~~L~~~~~-~t~~eLA~~l---gis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~ 70 (203)
T TIGR02702 3 KEDILSYLLKQGQ-ATAAALAEAL---AISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQ 70 (203)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhh
Confidence 6789999987765 6888876655 89999999999999999999765 257788888877665443
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.60 E-value=16 Score=33.40 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhc
Q 027291 155 KNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDV 197 (225)
Q Consensus 155 k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~f 197 (225)
...+....+........|-.+...+...-|.+..++..++..|
T Consensus 243 ~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 243 EEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3333334444444445555566666556677777777766654
No 35
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=89.55 E-value=0.31 Score=40.64 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGT 66 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGs 66 (225)
.+|+-.-..|..||++|.+....+|--||-..+.+ .+|...||=-.|..|++.|+|+.=..|.
T Consensus 19 ~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~~~~ 83 (169)
T PRK11639 19 QRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVESTN 83 (169)
T ss_pred HcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEecCC
Confidence 45776677899999999999999999999988877 5688999999999999999998655443
No 36
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=89.08 E-value=3.8 Score=34.82 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=37.1
Q ss_pred hccCCCcchhcHHHHHHHhhhcCccccccccce-----eeEEcccchhh
Q 027291 35 LGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTS-----VYFWSLPSCAG 78 (225)
Q Consensus 35 ~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGss-----N~YWsFps~~~ 78 (225)
+|-..||....|..+|..|-++|+|..-|++.. -|||-+-++..
T Consensus 38 la~~l~i~~~~vrriL~~L~e~~li~~~k~rd~~~~~~~y~w~~~~~~v 86 (176)
T COG1675 38 LAELLGIKKNEVRRILYALYEDGLISYRKKRDEESGWEEYTWYINYEKV 86 (176)
T ss_pred HHHHhCccHHHHHHHHHHHHhCCceEEEeecccCCCcEEEEEEechHHH
Confidence 344479999999999999999999999888775 58899887653
No 37
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=88.96 E-value=3.6 Score=31.29 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
..+..+...+..+++.++.+...+...|...+... +++..+.++...+..++..+..++..+.
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~---~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAG---EDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT---CCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777777777777777777776644 3455666666666666666666555443
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.86 E-value=19 Score=33.04 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 027291 121 EALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAA 164 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~a 164 (225)
.+.+.+..|..++..|+.-......+||+.+..++.++......
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~ 224 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEE 224 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444445555444444444433333
No 39
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.79 E-value=14 Score=37.20 Aligned_cols=148 Identities=21% Similarity=0.324 Sum_probs=77.3
Q ss_pred CCCCCCHHHHHH--HHHHH-----------------HhhccCccchHHHHhhccCCCc------------chhcHHHHHH
Q 027291 3 KKRGLSLEEKRG--KILEI-----------------FYESQDFYLLKELEKLGPKKGV------------ITQSVKDVVQ 51 (225)
Q Consensus 3 ~~KglS~eEKr~--ril~~-----------------f~e~~~~ytlKELEK~~pKkGI------------~~~~VKdvlQ 51 (225)
|++-||.|||+. +.+.| |++-+. .|.-+|+.+|.-|| .+-++.++|-
T Consensus 318 P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~--kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~ 395 (652)
T COG2433 318 PDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKP--KLEKVERKLPELGIWKDVERIKALVIRGYPLAEALS 395 (652)
T ss_pred CcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHH--HHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHH
Confidence 567899999998 22221 222222 56778999988765 2445555555
Q ss_pred HhhhcCccccccccc--------eeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--HHHH-
Q 027291 52 SLVDDDLVLKDKIGT--------SVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREES--DERE- 120 (225)
Q Consensus 52 ~LVDDglV~~EKiGs--------sN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~--~eR~- 120 (225)
.....-. --|+-|+ ..++ .....+..++++|+.++..|+..+.+++..|+.++...+.. ..|.
T Consensus 396 ~~~e~~~-p~e~~~~~~~e~~ei~~~~-----~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~ 469 (652)
T COG2433 396 KVKEEER-PREKEGTEEEERREITVYE-----KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDK 469 (652)
T ss_pred HHHhhhc-cccccccccccccchhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554333 4556666 2221 22334555666666666666666666666666554422110 0111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 027291 121 -EALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAH 162 (225)
Q Consensus 121 -~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k 162 (225)
..-.++..++.++..|+.+|..-. ..++.++..+..++
T Consensus 470 ~~~~rei~~~~~~I~~L~~~L~e~~----~~ve~L~~~l~~l~ 508 (652)
T COG2433 470 VRKDREIRARDRRIERLEKELEEKK----KRVEELERKLAELR 508 (652)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 112335555566666666554322 24555555544444
No 40
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=88.42 E-value=7.1 Score=30.87 Aligned_cols=61 Identities=21% Similarity=0.197 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
+.-|.+||.++.... ..+.-||-.. -|++..+|--.|.-|.+-|||.+++.|...||.-=|
T Consensus 15 dptRl~IL~~L~~~~-~~~v~ela~~---l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~ 75 (117)
T PRK10141 15 DETRLGIVLLLRESG-ELCVCDLCTA---LDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLSP 75 (117)
T ss_pred CHHHHHHHHHHHHcC-CcCHHHHHHH---HCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEECc
Confidence 346788999987543 3677777543 488999999999999999999999999999888755
No 41
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=88.24 E-value=13 Score=31.05 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHh
Q 027291 118 EREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIE-VAHAAANRWTDNIFTLQQWCSN 181 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~-~~k~aanrwTDNI~~l~~~~~k 181 (225)
++..+...+..|+.+...|...+..+++-. ..++....++. .....-.|.|+=|-.++.++-+
T Consensus 90 e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~-~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver 153 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLELKLKNLSDQS-SRLEEREAELKKEYNRLHERERELLRKLKEHVER 153 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999998888777542 23333333322 3455556788877777777654
No 42
>PF13730 HTH_36: Helix-turn-helix domain
Probab=88.15 E-value=0.88 Score=30.23 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHhh--ccCcc-chHHHHhhccCCCcchhcHHHHHHHhhhcCcc
Q 027291 5 RGLSLEEKRGKILEIFYE--SQDFY-LLKELEKLGPKKGVITQSVKDVVQSLVDDDLV 59 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e--~~~~y-tlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV 59 (225)
++||+.+|.--+.=.-+. ...+| +...|- ...|++..||.-.+..|++-|+|
T Consensus 1 ~~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la---~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 1 KNLSPTAKLVYLYLASYANKNGGCFPSQETLA---KDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCcCHHHHH---HHHCcCHHHHHHHHHHHHHCcCC
Confidence 478888886543322222 22244 555544 44599999999999999999986
No 43
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=87.97 E-value=0.65 Score=32.42 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=42.1
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
.+++..+. ...-.|..|| +...||...+|-.+|..|++.|+|...+ |.--.|++-|
T Consensus 11 ~~vy~~Ll-~~~~~t~~eI---a~~l~i~~~~v~~~L~~L~~~GlV~~~~-~~~~~Y~a~~ 66 (68)
T PF01978_consen 11 AKVYLALL-KNGPATAEEI---AEELGISRSTVYRALKSLEEKGLVEREE-GRPKVYRAVP 66 (68)
T ss_dssp HHHHHHHH-HHCHEEHHHH---HHHHTSSHHHHHHHHHHHHHTTSEEEEE-ECCEEEEEE-
T ss_pred HHHHHHHH-HcCCCCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEEc-CceEEEEEeC
Confidence 45666666 4444555554 4456999999999999999999999999 7777777655
No 44
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=87.62 E-value=1.1 Score=36.48 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=35.3
Q ss_pred ccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc----c---cc-ceeeEEcccch
Q 027291 26 FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD----K---IG-TSVYFWSLPSC 76 (225)
Q Consensus 26 ~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E----K---iG-ssN~YWsFps~ 76 (225)
.-+=.||- ..-||....|.-+|..|-+|+++.+. + -| ...|||.+...
T Consensus 15 ~~~dedLa---~~l~i~~n~vRkiL~~L~ed~~~~~~~~~e~~~~~~~~~~~yw~i~y~ 70 (147)
T smart00531 15 CVTEEDLA---ELLGIKQKQLRKILYLLYDEKLIKIDYKREKDPETKTWYRYYWYINYD 70 (147)
T ss_pred CcCHHHHH---HHhCCCHHHHHHHHHHHHhhhcchhheeeeeCCCCceEEEEEEEecHH
Confidence 44444443 34599999999999999999886443 2 46 78899999853
No 45
>PF15556 Zwint: ZW10 interactor
Probab=86.89 E-value=20 Score=31.45 Aligned_cols=113 Identities=15% Similarity=0.244 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 027291 90 SDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVEL-----KHIELKDEMGQYADNDPAAFEAMKNAIEVAHAA 164 (225)
Q Consensus 90 ~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~-----~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~a 164 (225)
-++++...+...|++.++..........++...-..-..|+. -+++..+|+..-....-..++.+..++..++..
T Consensus 91 ~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQ 170 (252)
T PF15556_consen 91 PQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQ 170 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666777777666544333444444343444433 344445555555555667889999999999999
Q ss_pred HHhhhhhHHHHHHH------HHhhCCCCHHHHHHHHhhcCCCCCc
Q 027291 165 ANRWTDNIFTLQQW------CSNNFPQAKEELEQMYKDVGIPEDF 203 (225)
Q Consensus 165 anrwTDNI~~l~~~------~~kk~~~~~~~~~~l~~~fgIp~d~ 203 (225)
|..|-|-.---..| +..+.-.+..+.. +..+++||+|-
T Consensus 171 a~qeqdKLQR~qtfLqLl~tLq~k~~~~eae~e-~~~~~~lp~dk 214 (252)
T PF15556_consen 171 AGQEQDKLQRHQTFLQLLYTLQGKLLFPEAEAE-LPQELDLPEDK 214 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccccc-chhhcCCCccc
Confidence 99999965433333 3445445444432 34567777664
No 46
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.68 E-value=31 Score=34.44 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 88 LESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
+-.+++.++..-.+|.+.|++..+
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek 256 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREK 256 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555777777777777777775544
No 47
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=86.37 E-value=5.3 Score=28.58 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMG 141 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~ 141 (225)
..+...+..++..+++...-+..++-.+.. -+...|..+..++...+.++..|+.+|.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~-----~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRS-----LPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-----S-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555555554443322 2557788888888888888888887775
No 48
>PRK11637 AmiB activator; Provisional
Probab=86.29 E-value=30 Score=32.68 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
..+.+++.++++++..+.++..++..+...
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~ 73 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASL 73 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666655555544
No 49
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.36 E-value=16 Score=31.40 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------CcHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGRE---------------ESDEREEAL-EELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~---------------~~~eR~~ll-~~l~~L~~~~~~l~~el~~~~ 144 (225)
.+.++..+++++..++-.-..|..++......|. .++-|.-+| .++..|...++....+|..+-
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555444442 234455444 457777888888887777644
Q ss_pred h---CCHHHHHHHHHHHHHHHHHHHh
Q 027291 145 D---NDPAAFEAMKNAIEVAHAAANR 167 (225)
Q Consensus 145 ~---~Dp~~i~~~k~~~~~~k~aanr 167 (225)
. .||..+..+...+....++-|.
T Consensus 171 ~~~nldp~~~~~v~~~l~~~l~~KN~ 196 (201)
T PF13851_consen 171 AAANLDPAALSQVSKKLEDVLDSKNQ 196 (201)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 4899888888777777666543
No 50
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.27 E-value=24 Score=30.67 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGRE------------ESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~------------~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
...+..++..+.........-+.+.+..|..+..... -..+|..+...+..++.....|...++++..
T Consensus 25 ~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~ 104 (207)
T PF05010_consen 25 EQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKE 104 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444555566666666666666666666655433221 1236677777777776666666555555543
Q ss_pred C--C-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhc
Q 027291 146 N--D-PAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDV 197 (225)
Q Consensus 146 ~--D-p~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~f 197 (225)
. + -.--+.++..+....+.+..|+.-+-+|+.|.-.+......+++++++.+
T Consensus 105 vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~ 159 (207)
T PF05010_consen 105 VIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKH 159 (207)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 0 01123456677777888889999999999999999988888888877654
No 51
>PRK02224 chromosome segregation protein; Provisional
Probab=84.94 E-value=12 Score=38.42 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=8.2
Q ss_pred ccccccceeeEEcccchhh
Q 027291 60 LKDKIGTSVYFWSLPSCAG 78 (225)
Q Consensus 60 ~~EKiGssN~YWsFps~~~ 78 (225)
+|-=||+ .|+++..
T Consensus 453 ~Cp~C~r-----~~~~~~~ 466 (880)
T PRK02224 453 KCPECGQ-----PVEGSPH 466 (880)
T ss_pred cCCCCCC-----cCCCcch
Confidence 3455777 5666554
No 52
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=84.93 E-value=2.5 Score=26.92 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=39.4
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
..|+.++.+. ..++..+|-+.. |++..+|...|+.|++.|+|....=|
T Consensus 3 ~~il~~l~~~-~~~s~~~l~~~l---~~s~~tv~~~l~~L~~~g~i~~~~~~ 50 (53)
T smart00420 3 QQILELLAQQ-GKVSVEELAELL---GVSEMTIRRDLNKLEEQGLLTRVHGG 50 (53)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 4688888875 468998888776 89999999999999999999765433
No 53
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.62 E-value=13 Score=33.52 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=50.9
Q ss_pred ccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH-HHHHHHHHHHHHHHHHHHHH
Q 027291 64 IGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDERE-EALEELKAVELKHIELKDEM 140 (225)
Q Consensus 64 iGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~-~ll~~l~~L~~~~~~l~~el 140 (225)
++.+++|=.--++........+..++++...++.++..|...|++....+.+..+|- ..-.+++.|+.+++.++..+
T Consensus 19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677766667767788888888999889999999999888888876554433332 22233444444444444433
No 54
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.59 E-value=29 Score=34.74 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADN------DPAAFEAMKNAIEVAHAAANRWTDNIFTL 175 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~------Dp~~i~~~k~~~~~~k~aanrwTDNI~~l 175 (225)
.+|..+-.++..++.++.+.+.++..|... -|..+.+.+..+......- ++......|
T Consensus 262 ~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~-~~~~~~~~l 325 (650)
T TIGR03185 262 EEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQ-QNQLTQEEL 325 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 468888889999999999999999888854 4667777777777665433 444333333
No 55
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=84.56 E-value=6.4 Score=29.09 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=30.9
Q ss_pred ccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhH
Q 027291 26 FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQL 81 (225)
Q Consensus 26 ~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~ 81 (225)
+|+++|+-++ .||++.+|.-+. +.|+|...+..+ =||-|+......+
T Consensus 1 ~~~i~e~A~~---~gvs~~tLr~ye----~~Gli~p~r~~~--g~R~y~~~dv~~l 47 (91)
T cd04766 1 VYVISVAAEL---SGMHPQTLRLYE----RLGLLSPSRTDG--GTRRYSERDIERL 47 (91)
T ss_pred CcCHHHHHHH---HCcCHHHHHHHH----HCCCcCCCcCCC--CCeeECHHHHHHH
Confidence 4566665433 699998888774 469999865433 3666877655443
No 56
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=84.52 E-value=19 Score=35.56 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhC
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNF 183 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~ 183 (225)
+.+...+.++...+..+..+...+. +.++.++.+-..|++.+.+|--.+..++.++.+.-
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~----~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~n 434 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEIN----ESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSN 434 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455556666666666666666654 46788888889999999999999999999987643
No 57
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=84.34 E-value=1.8 Score=32.60 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhh---ccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc
Q 027291 9 LEEKRGKILEIFYE---SQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL 60 (225)
Q Consensus 9 ~eEKr~ril~~f~e---~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~ 60 (225)
...-+.+||++|++ +.+=.++.+|=+.+ |+..-.|++.|+.|+++|.|-
T Consensus 45 ~~~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l---~~~~~~v~~al~~L~~eG~IY 96 (102)
T PF08784_consen 45 LSPLQDKVLNFIKQQPNSEEGVHVDEIAQQL---GMSENEVRKALDFLSNEGHIY 96 (102)
T ss_dssp S-HHHHHHHHHHHC----TTTEEHHHHHHHS---TS-HHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcccHHHHHHHh---CcCHHHHHHHHHHHHhCCeEe
Confidence 45568899999999 44456777776666 899999999999999999983
No 58
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.15 E-value=17 Score=30.41 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027291 149 AAFEAMKNAIEVAHAAANRWT 169 (225)
Q Consensus 149 ~~i~~~k~~~~~~k~aanrwT 169 (225)
..|..++.++...|-..-||.
T Consensus 138 ~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 138 TEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888885
No 59
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.27 E-value=18 Score=37.12 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=42.3
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhH
Q 027291 118 ER-EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNI 172 (225)
Q Consensus 118 eR-~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI 172 (225)
.| ..+|+.+.+|+.++-.|++++..|+.+- ..++-++.+++.+.+.+..|.-.+
T Consensus 90 ~rE~rll~dyselEeENislQKqvs~Lk~sQ-vefE~~Khei~rl~Ee~~~l~~ql 144 (717)
T PF09730_consen 90 FREARLLQDYSELEEENISLQKQVSVLKQSQ-VEFEGLKHEIKRLEEEIELLNSQL 144 (717)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 4789999999999999999999999763 567777777777777766665433
No 60
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=82.99 E-value=2.2 Score=38.14 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=50.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhH
Q 027291 2 SKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQL 81 (225)
Q Consensus 2 m~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~ 81 (225)
|+||+++ +..||..+...+---..||| |.+-||++|.|-+++..||+||+|..+.=| ++-..-+....+
T Consensus 5 ~~kk~~t----~fqIL~ei~~~qp~v~q~eI---A~~lgiT~QaVsehiK~Lv~eG~i~~~gR~----~Y~iTkkG~e~l 73 (260)
T COG1497 5 MSKKNLT----RFQILSEIAVRQPRVKQKEI---AKKLGITLQAVSEHIKELVKEGLIEKEGRG----EYEITKKGAEWL 73 (260)
T ss_pred hccccch----HHHHHHHHHHhCCCCCHHHH---HHHcCCCHHHHHHHHHHHHhccceeecCCe----eEEEehhHHHHH
Confidence 4455443 34566666666555567775 344699999999999999999999995443 444444444444
Q ss_pred HHHHHHHH
Q 027291 82 RNVYRKLE 89 (225)
Q Consensus 82 ~~~~~~l~ 89 (225)
...+..+.
T Consensus 74 ~~~~~dlr 81 (260)
T COG1497 74 LEQLSDLR 81 (260)
T ss_pred HHHHHHHH
Confidence 44444443
No 61
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=82.94 E-value=19 Score=36.48 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=54.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-------C-------CCcHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 75 SCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKK-G-------R-------EESDEREEALEELKAVELKHIELKDE 139 (225)
Q Consensus 75 s~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~-~-------r-------~~~~eR~~ll~~l~~L~~~~~~l~~e 139 (225)
++....++.++..|+.++..++.++..|+.+|+.... | | +.+.........+..|+.+++.|...
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678889999999999999999999999987311 1 1 11234455678899999999999999
Q ss_pred HHHHhhC
Q 027291 140 MGQYADN 146 (225)
Q Consensus 140 l~~~~~~ 146 (225)
+..+...
T Consensus 582 l~~le~~ 588 (722)
T PF05557_consen 582 LRSLEEG 588 (722)
T ss_dssp HHHHTTT
T ss_pred HHhcccC
Confidence 9777654
No 62
>PRK11637 AmiB activator; Provisional
Probab=82.73 E-value=40 Score=31.87 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
....++..+..+++++..++.++.++...+...
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l 80 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQ 80 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666665555555554
No 63
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=82.65 E-value=5 Score=29.60 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=23.6
Q ss_pred HHHHHhhhcCccccccccceeeEEcccchhhhhH
Q 027291 48 DVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQL 81 (225)
Q Consensus 48 dvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~ 81 (225)
+.|..||+-|+|...-.| .. |.|++......
T Consensus 15 ~~l~~lve~Gli~p~~~~-~~--~~f~~~~l~rl 45 (84)
T PF13591_consen 15 EFLRELVEEGLIEPEGEE-EE--WYFSEEDLARL 45 (84)
T ss_pred HHHHHHHHCCCeeecCCC-Ce--eeECHHHHHHH
Confidence 567889999999998777 44 44988766553
No 64
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.42 E-value=32 Score=31.70 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNA 157 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~ 157 (225)
...+..-+..+.+..+.++.++..|++..+....-- .++=..+-+++.++..++...+.++..+. ..+..+...
T Consensus 167 ~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d--~~eL~~lk~~l~~~~~ei~~~~~~l~e~~----~~l~~l~~~ 240 (312)
T smart00787 167 LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD--PTELDRAKEKLKKLLQEIMIKVKKLEELE----EELQELESK 240 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 344444455555555555555555555554443321 11111111333333333333333333333 123333333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhc
Q 027291 158 IEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDV 197 (225)
Q Consensus 158 ~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~f 197 (225)
+....+....+...|-.+..-+...-|.+..++..|+..|
T Consensus 241 I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~ 280 (312)
T smart00787 241 IEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQL 280 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4444444444444444555555555566666666666444
No 65
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.94 E-value=21 Score=28.70 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=6.5
Q ss_pred HHHHHhhhcCcccc
Q 027291 48 DVVQSLVDDDLVLK 61 (225)
Q Consensus 48 dvlQ~LVDDglV~~ 61 (225)
-+-+.|+.=|++..
T Consensus 6 yiN~~L~s~G~~~~ 19 (151)
T PF11559_consen 6 YINQQLLSRGYPSD 19 (151)
T ss_pred HHHHHHHHCCCCCC
Confidence 34445555444443
No 66
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=81.68 E-value=24 Score=27.86 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSK-----KRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD-NDPAAFEAMK 155 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~-----~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~-~Dp~~i~~~k 155 (225)
..+...++.+|+-.+ .++..|+..+...+..=.+..-+.....++.+.+.++.+-+.+|..-.. .||+.|.+.+
T Consensus 23 ~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~ 102 (115)
T PF06476_consen 23 EAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQ 102 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345556666666655 4578888888888775455666777778888899999999999988665 5899999999
Q ss_pred HHHHHHHHHH
Q 027291 156 NAIEVAHAAA 165 (225)
Q Consensus 156 ~~~~~~k~aa 165 (225)
+.+..++..+
T Consensus 103 ~KL~ea~~eL 112 (115)
T PF06476_consen 103 KKLAEAKAEL 112 (115)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 67
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.60 E-value=18 Score=26.30 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 027291 151 FEAMKNAIEVAHAAANRWTDNIFTLQQ 177 (225)
Q Consensus 151 i~~~k~~~~~~k~aanrwTDNI~~l~~ 177 (225)
...++.+...++..-+-|.+-|..|.+
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555566655555544
No 68
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=81.52 E-value=11 Score=32.96 Aligned_cols=60 Identities=8% Similarity=0.156 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccc
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPS 75 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps 75 (225)
++.+.+|++++.+.+ +.+.+||-+.. ||+.+||.-.|..|...|+|.. ...+.+|+.++.
T Consensus 3 ~~R~~~Il~~l~~~~-~~~~~eLa~~l---~VS~~TiRRdL~~L~~~~~l~r--~~Gga~~~~~~~ 62 (240)
T PRK10411 3 AARQQAIVDLLLNHT-SLTTEALAEQL---NVSKETIRRDLNELQTQGKILR--NHGRAKYIHRQN 62 (240)
T ss_pred hHHHHHHHHHHHHcC-CCcHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEE--ecCeEEEecCCC
Confidence 567889999999654 89999998888 8999999999999999999864 455666776553
No 69
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=81.43 E-value=35 Score=29.56 Aligned_cols=87 Identities=8% Similarity=0.175 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hC-CHHHHHHHHHHHHH
Q 027291 84 VYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA--DN-DPAAFEAMKNAIEV 160 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~--~~-Dp~~i~~~k~~~~~ 160 (225)
....|+.+++++..++..++...+.. +.++.....++.+ +|+.-++=.+.+|..+. .. .+.-+...+.++..
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~--e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ 171 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKR--EFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDT 171 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHH--HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHH
Confidence 34456666666666666666555443 2233344444432 34444444444454443 22 34555555555555
Q ss_pred HHHHHHhhhhhHHHHHHHHHhh
Q 027291 161 AHAAANRWTDNIFTLQQWCSNN 182 (225)
Q Consensus 161 ~k~aanrwTDNI~~l~~~~~kk 182 (225)
..+. +..|.+|+.++
T Consensus 172 ie~Q-------V~~Le~~L~~k 186 (195)
T PF12761_consen 172 IEEQ-------VDGLESHLSSK 186 (195)
T ss_pred HHHH-------HHHHHHHHHHH
Confidence 5544 56899999876
No 70
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=81.36 E-value=11 Score=28.47 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 90 SDLQSSKKRHTELVEQCNALKK---GRE-ESDEREEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 90 ~~i~~~~~~i~~l~~~ie~~k~---~r~-~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
.+|+.++.+++.....++.... +++ ..+.|..+-.++..+...+...+++|..+..-
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 4555555555555555554432 333 34578899999999999999999999888853
No 71
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=81.18 E-value=16 Score=26.09 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc--ceeeEEcccchhhhhHH
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG--TSVYFWSLPSCAGNQLR 82 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG--ssN~YWsFps~~~~~~~ 82 (225)
-|||.. .-.||.++...+ ..+.++|-.. .+++..+|--.|..|++.|+|...+.+ --..|+.+.........
T Consensus 6 ~~l~~~--~~~il~~l~~~~-~~~~~~la~~---~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~ 79 (101)
T smart00347 6 LGLTPT--QFLVLRILYEEG-PLSVSELAKR---LGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIE 79 (101)
T ss_pred cCCCHH--HHHHHHHHHHcC-CcCHHHHHHH---HCCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHH
Confidence 356655 457788887765 4788888544 478899999999999999999988664 24456666555544433
Q ss_pred H
Q 027291 83 N 83 (225)
Q Consensus 83 ~ 83 (225)
.
T Consensus 80 ~ 80 (101)
T smart00347 80 E 80 (101)
T ss_pred H
Confidence 3
No 72
>PHA00738 putative HTH transcription regulator
Probab=81.09 E-value=6.8 Score=30.81 Aligned_cols=69 Identities=17% Similarity=0.069 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 8 SLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 8 S~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
-.+.-|.+||.++..... -+.-||-. .-|++..+|--.|.-|.+-|||.++|.|.-.||.-=|.....+
T Consensus 9 ~~dptRr~IL~lL~~~e~-~~V~eLae---~l~lSQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~~~~~~ 77 (108)
T PHA00738 9 RAKILRRKILELIAENYI-LSASLISH---TLLLSYTTVLRHLKILNEQGYIELYKEGRTLYAKIRENSKEIQ 77 (108)
T ss_pred cCCHHHHHHHHHHHHcCC-ccHHHHHH---hhCCCHHHHHHHHHHHHHCCceEEEEECCEEEEEECCCccHHH
Confidence 356789999999976432 34445533 3479999999999999999999999999999999888755433
No 73
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=79.99 E-value=44 Score=30.99 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=42.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHhhCCCC
Q 027291 114 EESDEREEALEELKAVELKHIELKDEMGQYAD--NDPAAFEAMKNAIEVAHAAANRWTDNI-----FTLQQWCSNNFPQA 186 (225)
Q Consensus 114 ~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~--~Dp~~i~~~k~~~~~~k~aanrwTDNI-----~~l~~~~~kk~~~~ 186 (225)
.+-.+|++.|.+. ..+++.++.|.+.-.. +|..-+.++++.+..+++......=-| .++.+|++..||+.
T Consensus 301 ~gv~~rT~~L~eV---m~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~ehs~lq~~l~~~~N~~ 377 (384)
T KOG0972|consen 301 VGVSSRTETLDEV---MDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVFEHSILQTYLRDHFNFS 377 (384)
T ss_pred ccHHHHHHHHHHH---HHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheehhhHHHHHHHHHHHhccc
Confidence 3455677665543 3344444444443322 255557788888888888765443333 24678888888876
Q ss_pred HH
Q 027291 187 KE 188 (225)
Q Consensus 187 ~~ 188 (225)
..
T Consensus 378 a~ 379 (384)
T KOG0972|consen 378 AN 379 (384)
T ss_pred cc
Confidence 53
No 74
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=79.95 E-value=14 Score=35.36 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=45.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
+....+..+..++..+++.++.++..+..+|...+..++ ++.+++++..+|.++++.+.+++..+.
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~ 93 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE---DAEALIAEVKELKEEIKALEAELDELE 93 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777888888888888888888877554443 345566666777777776666665544
No 75
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.22 E-value=69 Score=31.65 Aligned_cols=59 Identities=14% Similarity=0.284 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNN 182 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk 182 (225)
+.+..++.++..++..+..+...+. +.+..++..-..++..+.+|-.-+..+..++.+.
T Consensus 379 sel~e~leel~e~leeie~eq~ei~----e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~ 437 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLS----EMLQGLRKDELEAREKLERYRNKLHEIKRYLEKS 437 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444555555555555555555554 4577888888889999999999999999888875
No 76
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=78.87 E-value=4.5 Score=27.55 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=38.7
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
+..|++++.+. .+.+++||-... ||+.+||.=-|..|.+.|+|..-.
T Consensus 2 ~~~Il~~l~~~-~~~s~~ela~~~---~VS~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 2 QQQILELLKEK-GKVSVKELAEEF---GVSEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHHHHc-CCEEHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEc
Confidence 46789998775 577888887665 999999999999999999976543
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.69 E-value=67 Score=32.15 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 027291 146 NDPAAFEAMKNAIEVAHAAANR 167 (225)
Q Consensus 146 ~Dp~~i~~~k~~~~~~k~aanr 167 (225)
..|+.+++|..+...+...+|+
T Consensus 329 iS~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 329 ISGEDVERMNLERNKLKRELNK 350 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555555444443
No 78
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.59 E-value=32 Score=28.27 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhc
Q 027291 118 EREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDV 197 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~f 197 (225)
+-..+-+++.+|+.++..|+.+|..+...-+ .+++...+..+...+..-.+-+..|.+ ....++++++..+.+.|
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~---~~~~vs~ee~~~~~~~~ 154 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLRS---GSKPVSPEEKEKLEKEY 154 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHH
Confidence 3456667778888888888888888887643 345566666666666666666666655 34458888877766654
No 79
>PLN02678 seryl-tRNA synthetase
Probab=78.51 E-value=16 Score=35.32 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=44.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
++...+..+..++..+++.++.++..+..+|...+... +++.+++++..+|.+++..++.++..+.
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~---~~~~~l~~~~~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK---EDATELIAETKELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777788888888888888888887654433 3455666667777666666666655543
No 80
>PRK14137 recX recombination regulator RecX; Provisional
Probab=78.48 E-value=4.7 Score=34.65 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=53.8
Q ss_pred CCCCCHHHHHHHHHHHHhh--ccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYE--SQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e--~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
+++++.+|=+.+++.+-.. ++--||-+||...+.++|+.+..|..||+.|...|+|+=..--
T Consensus 30 ~~~~~~~e~~~~~~~~Al~~Ls~R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e~gyLDD~rfA 93 (195)
T PRK14137 30 RTPPTPDEAREALLAYAFRALAARAMTAAELRAKLERRSEDEALVTEVLERVQELGYQDDAQVA 93 (195)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 4578999888888777655 6889999999999999999999999999999999999877653
No 81
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=77.92 E-value=69 Score=31.71 Aligned_cols=94 Identities=13% Similarity=0.236 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHHHHHH
Q 027291 91 DLQSSKKRHTELVEQCNALKK---GREESDEREEALEELKAVELKHIELKDEMGQYADNDPA-AFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 91 ~i~~~~~~i~~l~~~ie~~k~---~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~-~i~~~k~~~~~~k~aan 166 (225)
.++.+-..|.++..++.-.+. .|-+++.+ +...++..++.+++.+-..+.-+..-+|. .|.+++..+. ..++-
T Consensus 420 KVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k-~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~--~~qi~ 496 (531)
T PF15450_consen 420 KVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGK-AREREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLA--TNQIM 496 (531)
T ss_pred HHHhhhHHHHHHHHHHHHHHhhhhhhccHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH--HHHHH
Confidence 333333334444444443333 34455553 44455889999999998889889988997 7888877665 44444
Q ss_pred hhhhhHHHHHHHHHhhCCCCH
Q 027291 167 RWTDNIFTLQQWCSNNFPQAK 187 (225)
Q Consensus 167 rwTDNI~~l~~~~~kk~~~~~ 187 (225)
....+|-.-+--.-.||+-..
T Consensus 497 kle~siq~nKtiqn~kfntEt 517 (531)
T PF15450_consen 497 KLENSIQTNKTIQNLKFNTET 517 (531)
T ss_pred HHHHHHHHHHHHHhcccchHH
Confidence 444444444444556776543
No 82
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.78 E-value=41 Score=34.38 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027291 86 RKLESDLQSSKKRHTELVEQCNALKKG 112 (225)
Q Consensus 86 ~~l~~~i~~~~~~i~~l~~~ie~~k~~ 112 (225)
..|++++.+.+.....++.++.++++.
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555666555544
No 83
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.18 E-value=38 Score=27.55 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----------HHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADND----------PAA 150 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~D----------p~~ 150 (225)
+...+..|+..+..++..+..++..+..++..-+.++.+. ...+.|...+..|..+|......= ...
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~---~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ 109 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK---SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVK 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555544444333333332 222245555555555544433221 123
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH
Q 027291 151 FEAMKNAIEVAHAAANRWTDNIFTL 175 (225)
Q Consensus 151 i~~~k~~~~~~k~aanrwTDNI~~l 175 (225)
.+.+.+.+..+-.....|-.=+..|
T Consensus 110 ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 110 AEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444455555555555555544433
No 84
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=77.11 E-value=28 Score=27.34 Aligned_cols=82 Identities=16% Similarity=0.268 Sum_probs=43.1
Q ss_pred hhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHH
Q 027291 43 TQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGRE--ESDERE 120 (225)
Q Consensus 43 ~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~--~~~eR~ 120 (225)
.-.|.+++..||++|-++.| ++..-.+.-+..++.+-..+..+ ...+|+.+..+-+ --.+-.
T Consensus 23 ~ek~~klvDelVkkGeln~e-------------Eak~~vddl~~q~k~~~~e~e~K---~~r~i~~ml~~~~~~r~~~~~ 86 (108)
T COG3937 23 AEKVQKLVDELVKKGELNAE-------------EAKRFVDDLLRQAKEAQGELEEK---IPRKIEEMLSDLEVARQSEMD 86 (108)
T ss_pred HHHHHHHHHHHHHcCCCCHH-------------HHHHHHHHHHHHHHHHhhhHHHh---hhHHHHHHHhhccccccchHH
Confidence 34578888888888888765 33333344444444333333333 2334443333211 001224
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027291 121 EALEELKAVELKHIELKDEM 140 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el 140 (225)
.+-.++..|+.++..|++++
T Consensus 87 ~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 87 ELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55566777777777777765
No 85
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.96 E-value=54 Score=35.70 Aligned_cols=99 Identities=15% Similarity=0.259 Sum_probs=65.8
Q ss_pred EEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-
Q 027291 70 FWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDP- 148 (225)
Q Consensus 70 YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp- 148 (225)
|| |.. ...+..+..+..++..++.....++..+..+.. .+..+..++..++.++......+. ..|+|
T Consensus 568 ~~--~~~--~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~------~l~~~~~~l~~~~~eL~~~~~~i~--~~~~~~ 635 (1311)
T TIGR00606 568 YF--PNK--KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQ------NKNHINNELESKEEQLSSYEDKLF--DVCGSQ 635 (1311)
T ss_pred CC--CCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh--cCCCch
Confidence 56 655 666777777788888888777777777765533 567777788888888888887777 44443
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 027291 149 ---AAFEAMKNAIEVAHAAANRWTDNIFTLQQWCS 180 (225)
Q Consensus 149 ---~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~ 180 (225)
+.+...+.++..+....+..+-.......|+.
T Consensus 636 ~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie 670 (1311)
T TIGR00606 636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFIT 670 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667777666555555544444444433
No 86
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=76.78 E-value=25 Score=25.27 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDER--EEALEELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR--~~ll~~l~~L~~~~~~l~~el~~ 142 (225)
...+..|+..++.+..++..-+.....+...|+ ...+ .....+..+|+.++..|+.+|+.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd-~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERD-SAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555444444444444444331 1111 12334444555555555555443
No 87
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=76.72 E-value=7.7 Score=25.55 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=36.1
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcC
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDD 57 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDg 57 (225)
...||.+|.++..++|.+||-.. -||+..||.-.|..|-+.|
T Consensus 2 ~~~il~~L~~~~~~it~~eLa~~---l~vS~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 2 QKQILKLLLESKEPITAKELAEE---LGVSRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHHHTTTSBEHHHHHHH---CTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHH---hCCCHHHHHHHHHHHHHCC
Confidence 46899999999888999998665 4899999999999999888
No 88
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=76.63 E-value=31 Score=26.87 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc
Q 027291 2 SKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL 60 (225)
Q Consensus 2 m~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~ 60 (225)
|+++.-|.|.|...+...+.... +..++ |..-||++.+|---+...-+.|...
T Consensus 8 ~~rr~ys~EfK~~aV~~~~~~g~---sv~ev---A~e~gIs~~tl~~W~r~y~~~~~~~ 60 (121)
T PRK09413 8 EKRRRRTTQEKIAIVQQSFEPGM---TVSLV---ARQHGVAASQLFLWRKQYQEGSLTA 60 (121)
T ss_pred CCCCCCCHHHHHHHHHHHHcCCC---CHHHH---HHHHCcCHHHHHHHHHHHhhccccc
Confidence 34567999999888887766433 44554 5557999999999988887666543
No 89
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.25 E-value=18 Score=30.81 Aligned_cols=106 Identities=25% Similarity=0.338 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH----HHHH
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNALKKGREES-DEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMK----NAIE 159 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~-~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k----~~~~ 159 (225)
...++..++.++.++..++..+..+...-+.. ..|..- .+...+-.++..|+.++..+..- ++... ..+.
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~e----l~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKE----LEKYSENDPEKIE 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCHHHHH
Confidence 34567777788888888888887776643322 233333 55666667777777777666621 22221 3456
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhcCCCCC
Q 027291 160 VAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDVGIPED 202 (225)
Q Consensus 160 ~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~fgIp~d 202 (225)
..+.++..+-+ .+-.|--+-|.+.. = +++.|||+..
T Consensus 139 ~~~~~~~~~~~---~anrwTDNI~~l~~-~---~~~k~~~~~~ 174 (188)
T PF03962_consen 139 KLKEEIKIAKE---AANRWTDNIFSLKS-Y---LKKKFGMDEE 174 (188)
T ss_pred HHHHHHHHHHH---HHHHHHhhHHHHHH-H---HHHhcCCCHH
Confidence 66666666666 45556555555532 2 4556888744
No 90
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=76.20 E-value=26 Score=30.78 Aligned_cols=71 Identities=23% Similarity=0.330 Sum_probs=47.2
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc----cccceeeEEcccchhhhhHHHHHHH
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD----KIGTSVYFWSLPSCAGNQLRNVYRK 87 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E----KiGssN~YWsFps~~~~~~~~~~~~ 87 (225)
|++||..+-.+.. =|..||= -+=||++|.|+..|+.|+.+|+|.+. ..|=--+.|...-....+.-..+..
T Consensus 13 r~~il~lL~~~g~-~sa~elA---~~Lgis~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f~~~y~~ 87 (218)
T COG2345 13 RERILELLKKSGP-VSADELA---EELGISPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFPKRYGE 87 (218)
T ss_pred HHHHHHHHhccCC-ccHHHHH---HHhCCCHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhcchhhHH
Confidence 4556655554433 3555553 33599999999999999999999988 2344567777666554444444443
No 91
>PHA02943 hypothetical protein; Provisional
Probab=75.60 E-value=19 Score=30.20 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=51.1
Q ss_pred CCCCHH--HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 5 RGLSLE--EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 5 KglS~e--EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
+|+|.. +....||+++ ..-+=|..||=+ .-|++--+|.-+|..|--+|.|..-++|.+. ||+.--++..
T Consensus 3 r~~sd~v~~R~~eILE~L--k~G~~TtseIAk---aLGlS~~qa~~~LyvLErEG~VkrV~~G~~t-yw~l~~day~ 73 (165)
T PHA02943 3 RGMSDTVHTRMIKTLRLL--ADGCKTTSRIAN---KLGVSHSMARNALYQLAKEGMVLKVEIGRAA-IWCLDEDAYT 73 (165)
T ss_pred cchhHHHHHHHHHHHHHH--hcCCccHHHHHH---HHCCCHHHHHHHHHHHHHcCceEEEeecceE-EEEEChHHHH
Confidence 357755 3455677777 555556666533 3699999999999999999999999999988 5666554443
No 92
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=75.57 E-value=5.9 Score=34.87 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=51.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
|--++|+..=++--.||+.|.+...-.++.||-+.. |+...||=-+|+.|+..|+|..+.
T Consensus 1 ~~~~~~v~sl~ral~iL~~l~~~~~~ls~~eia~~l---gl~kstv~RlL~tL~~~g~v~~~~ 60 (263)
T PRK09834 1 MTEYKTVRGLSRGLMVLRALNRLDGGATVGLLAELT---GLHRTTVRRLLETLQEEGYVRRSA 60 (263)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEec
Confidence 334567777789999999999888789999998776 899999999999999999998764
No 93
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.54 E-value=53 Score=28.44 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCN 107 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie 107 (225)
....++.++++++++++.++.++.....
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4556777888888888877777766544
No 94
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.36 E-value=46 Score=27.58 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR-EESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r-~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
...+..+..+.+++++++..+.++...+...+... ...+.+...-.++..+....+.+.+++..+.
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777766643 2334556666777777777777777777666
No 95
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=75.18 E-value=53 Score=32.65 Aligned_cols=59 Identities=12% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhC
Q 027291 121 EALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNF 183 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~ 183 (225)
.+-..++.+.+.+...+.+..+++ +.+..++++=..|++-++|.---+..+..|+.+.-
T Consensus 379 ~lq~~l~~~~~~l~~i~~~q~~~~----e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~n 437 (570)
T COG4477 379 ELQDNLEEIEKALTDIEDEQEKVQ----EHLTSLRKDELEARENLERLKSKLHEIKRYMEKSN 437 (570)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444556666666666666666665 35777888888899999999999999999987643
No 96
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=74.43 E-value=10 Score=25.23 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHhhccCc-cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDF-YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~-ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
|||..+ -++|-++.....- -+..||-... |+...+|--+|..|+..|+|..+..
T Consensus 2 glt~~q--~~vL~~l~~~~~~~~t~~~la~~l---~~~~~~vs~~v~~L~~~Glv~r~~~ 56 (62)
T PF12802_consen 2 GLTPSQ--FRVLMALARHPGEELTQSELAERL---GISKSTVSRIVKRLEKKGLVERERD 56 (62)
T ss_dssp TSTHHH--HHHHHHHHHSTTSGEEHHHHHHHH---TS-HHHHHHHHHHHHHTTSEEEEE-
T ss_pred ccCHHH--HHHHHHHHHCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 455543 5677777777653 5888887665 7899999999999999999988765
No 97
>PF14282 FlxA: FlxA-like protein
Probab=74.36 E-value=30 Score=26.65 Aligned_cols=54 Identities=13% Similarity=0.307 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-CcH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 89 ESDLQSSKKRHTELVEQCNALKKGRE-ESD----EREEALEELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 89 ~~~i~~~~~~i~~l~~~ie~~k~~r~-~~~----eR~~ll~~l~~L~~~~~~l~~el~~ 142 (225)
...|+.|+..|..|+..|..+..... +.+ .+..|-.++..|+.++..++.+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777766666433 222 2334445555666666655555443
No 98
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.20 E-value=54 Score=35.04 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR-EESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKN 156 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r-~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~ 156 (225)
.+..+..+..+..++...+.++..++..|...+..- .-+.++......+..++.+++.+++.|..|. +++...+.+++
T Consensus 401 l~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~-~~~~~~e~l~q 479 (1174)
T KOG0933|consen 401 LRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLG-YKIGQEEALKQ 479 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcchHHHHHH
Confidence 344455566666677777777777666665554432 3456777889999999999999999998886 56778889999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHH
Q 027291 157 AIEVAHAAANRWTDNIFTLQQW 178 (225)
Q Consensus 157 ~~~~~k~aanrwTDNI~~l~~~ 178 (225)
....+....-+.-|+...|..-
T Consensus 480 ~~~~l~~~~~~lk~~~~~l~a~ 501 (1174)
T KOG0933|consen 480 RRAKLHEDIGRLKDELDRLLAR 501 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988888776653
No 99
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.39 E-value=32 Score=24.93 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
.+..+++.+-..|+.++.++.+|+++-...
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444555555555555555555555544444
No 100
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=73.31 E-value=62 Score=35.00 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 027291 146 NDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQW 178 (225)
Q Consensus 146 ~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~ 178 (225)
.||..|..+++++..+...+.+-..+-..+..|
T Consensus 768 vD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY 800 (1201)
T PF12128_consen 768 VDPERIQQLKQEIEQLEKELKRIEERRAEVIEY 800 (1201)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 399999999999998887776666665555444
No 101
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=73.30 E-value=11 Score=27.11 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 027291 119 REEALEELKAVELKHIELKDEMGQYADNDPAAFEAM 154 (225)
Q Consensus 119 R~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~ 154 (225)
...+-+++..++.+..+|+.|+..++ +|+.|+++
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l~--~~~rIe~~ 66 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAELS--RHERIEKI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CHHHHHHH
Confidence 34555566667777777777777666 57676653
No 102
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=73.17 E-value=43 Score=26.29 Aligned_cols=72 Identities=11% Similarity=-0.005 Sum_probs=48.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc-eeeEEcccchhhhh
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT-SVYFWSLPSCAGNQ 80 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs-sN~YWsFps~~~~~ 80 (225)
+-|||.. .-.+|..++.....-+..||-+. -|+...+|--+|..|+..|+|....... .-.+.-...+....
T Consensus 26 ~~glt~~--q~~vL~~l~~~~~~~t~~eLa~~---l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~ 98 (144)
T PRK03573 26 PLELTQT--HWVTLHNIHQLPPEQSQIQLAKA---IGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEP 98 (144)
T ss_pred hcCCCHH--HHHHHHHHHHcCCCCCHHHHHHH---hCCChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHH
Confidence 3466665 34677777765554566665444 5889999999999999999999887632 33344444444443
No 103
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=73.10 E-value=22 Score=25.93 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=47.2
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccce---eeEEcccchhhhhHHHHHHHHH
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTS---VYFWSLPSCAGNQLRNVYRKLE 89 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGss---N~YWsFps~~~~~~~~~~~~l~ 89 (225)
|-.||.++..... -+.++|-+. -|++..++--.|+.|.+.|+|.++|...+ .-||+...........-++.|.
T Consensus 2 Rl~Il~~L~~~~~-~~f~~L~~~---l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~~~~~~L~ 77 (80)
T PF13601_consen 2 RLAILALLYANEE-ATFSELKEE---LGLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFERYVAALR 77 (80)
T ss_dssp HHHHHHHHHHHSE-EEHHHHHHH---TT--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCC-CCHHHHHHH---hCcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHHHHHHHHHH
Confidence 3456677666333 344555444 48889999999999999999999987654 4578887777666555444443
No 104
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=72.97 E-value=88 Score=30.69 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHH--------------HHHHHHHHHHHHHHHHhhhhhHHHHH
Q 027291 125 ELKAVELKHIELKDEMGQYADNDPAA--------------FEAMKNAIEVAHAAANRWTDNIFTLQ 176 (225)
Q Consensus 125 ~l~~L~~~~~~l~~el~~~~~~Dp~~--------------i~~~k~~~~~~k~aanrwTDNI~~l~ 176 (225)
++......+..|+.+|..+....... +...+.++..++..++.-++-++.|.
T Consensus 243 kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~ 308 (522)
T PF05701_consen 243 KLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLR 308 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666543333 55555555555555555555444443
No 105
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=72.90 E-value=41 Score=25.91 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhh--hHHH
Q 027291 147 DPAAFEAMKNAIEVAHAAANRWTD--NIFT 174 (225)
Q Consensus 147 Dp~~i~~~k~~~~~~k~aanrwTD--NI~~ 174 (225)
||+.-.++...-...+..-.+|+= |||.
T Consensus 53 ~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 53 DEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 787777888788888888888873 5553
No 106
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.89 E-value=61 Score=28.87 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR 113 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r 113 (225)
.+...+++.+..++.++.+.+.++..++..+...+..|
T Consensus 52 ~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~ 89 (239)
T COG1579 52 IELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 35566788888888899999998888888887665544
No 107
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=72.71 E-value=46 Score=26.35 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=49.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Q 027291 73 LPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFE 152 (225)
Q Consensus 73 Fps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~ 152 (225)
.|.......+..+..|+.+++.......+ ..+ ..+=-..-..||..+...+..|.+++.... |+...+
T Consensus 18 Lp~~vR~~~Er~L~~L~~~l~~~~~~~~~--kk~-~~kYh~VRFfERkKa~R~lkql~k~l~~~~---------~~~~~~ 85 (114)
T PF10153_consen 18 LPADVRVEKERELEALKRELEEAERKEKE--KKM-AKKYHMVRFFERKKATRKLKQLEKKLEEAE---------DKKEIK 85 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------ccccHH
Confidence 46666677777777777766664333221 111 000001235688888888888777776654 666777
Q ss_pred HHHHHHHHHHHHHH
Q 027291 153 AMKNAIEVAHAAAN 166 (225)
Q Consensus 153 ~~k~~~~~~k~aan 166 (225)
.+..++..+...+|
T Consensus 86 ~l~~~l~~~~~DL~ 99 (114)
T PF10153_consen 86 ELEKELHKLEVDLN 99 (114)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766543
No 108
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=72.67 E-value=9.8 Score=26.86 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhh----ccCccchHHHHhhccCCCcc-hhcHHHHHHHhhhcCccccc
Q 027291 9 LEEKRGKILEIFYE----SQDFYLLKELEKLGPKKGVI-TQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 9 ~eEKr~ril~~f~e----~~~~ytlKELEK~~pKkGI~-~~~VKdvlQ~LVDDglV~~E 62 (225)
+-+++.+||+|+.+ +.-.=|+.||=.. -|+. +.+|...|+.|.+.|+|..+
T Consensus 4 LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~---~g~~S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 4 LTERQKEVLEFIREYIEENGYPPTVREIAEA---LGLKSTSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp --HHHHHHHHHHHHHHHHHSS---HHHHHHH---HTSSSHHHHHHHHHHHHHTTSEEEG
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCHHHHHHH---hCCCChHHHHHHHHHHHHCcCccCC
Confidence 34678888888776 4555577776544 4676 99999999999999999765
No 109
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.50 E-value=58 Score=27.47 Aligned_cols=107 Identities=19% Similarity=0.287 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR-------EESDER-EEALEELKAVELKHIELKDEMGQYADND 147 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r-------~~~~eR-~~ll~~l~~L~~~~~~l~~el~~~~~~D 147 (225)
.........+..++.++..+.....++...+-.+...- .....+ ..+-.++..|+.++..+..++.......
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666666665555555554443211 111111 2333334444444444444444433321
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhh
Q 027291 148 ---PAAFEAMKNAIEVAHAAANRWT-DNIFTLQQWCSNN 182 (225)
Q Consensus 148 ---p~~i~~~k~~~~~~k~aanrwT-DNI~~l~~~~~kk 182 (225)
-+.+..+.-+...+-+...+-. +|-..|.-|+.++
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233334444444444444433 5888888888765
No 110
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.18 E-value=62 Score=28.68 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C----CCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh--CCHH
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKG--R----EESDEREEALEE-LKAVELKHIELKDEMGQYAD--NDPA 149 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~--r----~~~~eR~~ll~~-l~~L~~~~~~l~~el~~~~~--~Dp~ 149 (225)
..+.....=|+..|+.++..+..++..++.+..+ | ....+|...++. +...+-=+..|..=|..+.. .||+
T Consensus 118 ~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e 197 (233)
T PF04065_consen 118 KEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPE 197 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3445555567777777777777777777765431 1 133444433322 22333333444444444443 3899
Q ss_pred HHHHHHHHHHHHHHH
Q 027291 150 AFEAMKNAIEVAHAA 164 (225)
Q Consensus 150 ~i~~~k~~~~~~k~a 164 (225)
.|..++..+.-..+.
T Consensus 198 ~V~~ikedieyYve~ 212 (233)
T PF04065_consen 198 QVEDIKEDIEYYVES 212 (233)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999888877776664
No 111
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=71.72 E-value=4 Score=32.40 Aligned_cols=67 Identities=18% Similarity=0.322 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc-------cccccee-eEEcccchh
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK-------DKIGTSV-YFWSLPSCA 77 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~-------EKiGssN-~YWsFps~~ 77 (225)
..+++.-.+||+.++.... -++.+ +|.+-|+++.+|..-+..|.++|+|.- .++|..- .|..++-..
T Consensus 4 ~~lD~~D~~IL~~L~~d~r-~~~~e---ia~~lglS~~~v~~Ri~~L~~~GiI~~~~~~v~~~~lg~~~~a~v~v~~~~ 78 (154)
T COG1522 4 MKLDDIDRRILRLLQEDAR-ISNAE---LAERVGLSPSTVLRRIKRLEEEGVIKGYTAVLDPEKLGLDLTAFVEVKLER 78 (154)
T ss_pred ccccHHHHHHHHHHHHhCC-CCHHH---HHHHHCCCHHHHHHHHHHHHHCCceeeEEEEECHHHcCCCEEEEEEEEecC
Confidence 4578888999999999877 44444 455579999999999999999997754 3445432 555555443
No 112
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=71.56 E-value=39 Score=25.13 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhc
Q 027291 121 EALEELKAVELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDV 197 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~f 197 (225)
.+...+.+|+.+..++..++..+... +|+.+-+ .-+..++ .-|-.=|=--.|.+-+...-|+.-.+ +..+|
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l~~~~~~~v~--~hI~lLh-eYNeiKD~gQ~Lig~iA~~rgvt~~~---v~~e~ 77 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAELIEDPEKIVK--RHIKLLH-EYNEIKDIGQGLIGLIADQRGVTVKD---VYEEF 77 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHH--HHHHHHH-HHhHHHHHHHHHHHHHHHHcCCcHHH---HHHHc
Confidence 34455555555555666666655542 5544322 1122111 12222233335666667777888887 56799
Q ss_pred CCCCC
Q 027291 198 GIPED 202 (225)
Q Consensus 198 gIp~d 202 (225)
|++.+
T Consensus 78 gl~~~ 82 (83)
T PF07061_consen 78 GLDMN 82 (83)
T ss_pred CCCCC
Confidence 98854
No 113
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.32 E-value=38 Score=25.22 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 86 RKLESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 86 ~~l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
++|+.+|...-.-|.-|+..|++.+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 114
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=71.27 E-value=40 Score=32.12 Aligned_cols=67 Identities=24% Similarity=0.259 Sum_probs=44.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
+....+..+..++..+++.++.+...+..+|...+...+ +++++++++..+|..+++.+..++..+.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 96 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKK--DKIEEIKKELKELKEELTELSAALKALE 96 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667777888888888888877766443332 1266777777777777777777665554
No 115
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=71.02 E-value=71 Score=33.19 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhC
Q 027291 125 ELKAVELKHIELKDEMGQYADND---PAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNF 183 (225)
Q Consensus 125 ~l~~L~~~~~~l~~el~~~~~~D---p~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~ 183 (225)
++..|+.++..|...++.|.... .++++.+..+...+..+...-.+.|..|..-+...|
T Consensus 966 ~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 966 DEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888777777543 367777777777777777777777777777777766
No 116
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.87 E-value=32 Score=33.63 Aligned_cols=58 Identities=10% Similarity=0.230 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
-+.++..-+...++++++++.++.+++.+.. .+..+-+++++|+.+++.|+.+++...
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~sa------q~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNK------QRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555555555555555555544443333 334555667778888888877775433
No 117
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=70.81 E-value=35 Score=33.55 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q 027291 83 NVYRKLESDLQSSKKRHTELVEQCNALKKG----REE-------SDEREEALEELKAVELKHIELKDEMGQYADNDPAAF 151 (225)
Q Consensus 83 ~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~----r~~-------~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i 151 (225)
..+.+|+.+|+..+.+|+.|+..+..++.. +-. ..+|.+|-.+|+...-+..+|.+++..-.---.+.+
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~ 409 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIF 409 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHH
Confidence 345556666666666666666666665431 111 136777777777777777777665533221111222
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 027291 152 EAMKNAIEVAHAAANRWTDNIFTLQQWCSN 181 (225)
Q Consensus 152 ~~~k~~~~~~k~aanrwTDNI~~l~~~~~k 181 (225)
+ .+.......+-..+||....+-+..
T Consensus 410 ~----slek~~~~~~sl~~~i~~~~~~i~~ 435 (622)
T COG5185 410 K----SLEKTLRQYDSLIQNITRSRSQIGH 435 (622)
T ss_pred H----HHHHHHHHHHHHHHHhcccHHHHhh
Confidence 2 3333344445556666655444443
No 118
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=70.61 E-value=4.2 Score=29.49 Aligned_cols=43 Identities=28% Similarity=0.267 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhh-----CCCCHHHHHHHHhhcCCCCCccc
Q 027291 158 IEVAHAAANRWTDNIFTLQQWCSNN-----FPQAKEELEQMYKDVGIPEDFDY 205 (225)
Q Consensus 158 ~~~~k~aanrwTDNI~~l~~~~~kk-----~~~~~~~~~~l~~~fgIp~d~dy 205 (225)
+-.+..||+.. ||..|..+|++. -|.++++ +|+.||||.|+.-
T Consensus 16 L~~l~~AA~yL--~I~~L~~~~~~~iA~~i~gks~ee---ir~~fgi~~d~t~ 63 (78)
T PF01466_consen 16 LFDLLNAANYL--DIKGLLDLCCKYIANMIKGKSPEE---IRKYFGIENDLTP 63 (78)
T ss_dssp HHHHHHHHHHH--T-HHHHHHHHHHHHHHHTTS-HHH---HHHHHT---TSSH
T ss_pred HHHHHHHHHHH--cchHHHHHHHHHHHHHhcCCCHHH---HHHHcCCCCCCCH
Confidence 33345555543 566666666542 3777777 6779999999764
No 119
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=70.54 E-value=76 Score=28.01 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHH-------HHHHHhhhhhHHH
Q 027291 114 EESDEREEALEELKAVELKHIELKDEMGQYA---DNDPAAFEAMKNAIEVA-------HAAANRWTDNIFT 174 (225)
Q Consensus 114 ~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~---~~Dp~~i~~~k~~~~~~-------k~aanrwTDNI~~ 174 (225)
+.-.+|..++.++.+.+......+....++. ..+|+.+++..+++..+ .....|.|.|+-.
T Consensus 119 ealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~ 189 (230)
T cd07625 119 EALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLI 189 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999999999999999996 34698888888777753 4456667777653
No 120
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=70.42 E-value=16 Score=28.20 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=47.3
Q ss_pred eeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 67 SVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 67 sN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
+.+||..=+.. ...+..++.+.+.+.....++..++.+++.+ ++.++=..+--++.+++.+++.+..++....
T Consensus 20 ~~~~~~~l~~~-~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~L----Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 20 GGIFWLWLRRT-YAKREDIEKLEERLDEHDRRLQALETKLEHL----PTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566533333 3446778888888888888888877777554 4445555666667777777777766665543
No 121
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=70.27 E-value=10 Score=33.39 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc
Q 027291 8 SLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT 66 (225)
Q Consensus 8 S~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs 66 (225)
..+|.+.+|++++.+ +.+.+.+||-... ||+.+||.--|..|...|+|..-.-|.
T Consensus 2 ~~~~R~~~Il~~l~~-~~~~~~~ela~~l---~vS~~TirRdL~~Le~~g~i~r~~gga 56 (251)
T PRK13509 2 TEAQRHQILLELLAQ-LGFVTVEKVIERL---GISPATARRDINKLDESGKLKKVRNGA 56 (251)
T ss_pred CHHHHHHHHHHHHHH-cCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEecCCc
Confidence 457899999999996 5677888887774 899999999999999999997655554
No 122
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=70.23 E-value=2.9 Score=29.17 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=23.1
Q ss_pred HHHHHhhccCccchHHHHhhccCCCcchhcHHHHH
Q 027291 16 ILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVV 50 (225)
Q Consensus 16 il~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvl 50 (225)
+.++|..++..+- .||+.++.|.|++.++|++--
T Consensus 13 L~~Yy~~h~~L~E-~DL~~L~~kS~ms~qqVr~WF 46 (56)
T PF11569_consen 13 LEDYYLKHKQLQE-EDLDELCDKSRMSYQQVRDWF 46 (56)
T ss_dssp HHHHHHHT----T-THHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHcCCccH-hhHHHHHHHHCCCHHHHHHHH
Confidence 5667776665555 999999999999999998753
No 123
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=69.84 E-value=8.9 Score=24.82 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL 60 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~ 60 (225)
+.|.+|+..+.+ ..++.-||-+. .|++..+|--.|..|.+.|+|.
T Consensus 2 ~~R~~Il~~L~~--~~~~~~el~~~---l~~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 2 PTRLRILKLLSE--GPLTVSELAEE---LGLSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHHHTT--SSEEHHHHHHH---HTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHh--CCCchhhHHHh---ccccchHHHHHHHHHHHCcCee
Confidence 578899999988 44666666544 5889999999999999999986
No 124
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=69.75 E-value=28 Score=26.72 Aligned_cols=48 Identities=25% Similarity=0.307 Sum_probs=32.5
Q ss_pred cccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 63 KIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 63 KiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
.||++.|...=..++......+++.+++.++.++..+..+...+....
T Consensus 74 ~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 74 DLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred EecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367666666555567777777777777777777777777766665543
No 125
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=69.62 E-value=1.2e+02 Score=29.99 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 027291 147 DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWC 179 (225)
Q Consensus 147 Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~ 179 (225)
.|+.++.|..+-..+-..+++..--+..|..-+
T Consensus 366 s~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 366 STEQFELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 556666666666665555555555555544443
No 126
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=69.61 E-value=20 Score=25.08 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 84 VYRKLESDLQSSKKRHTELVEQCNALK-KGREESDEREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~~~ie~~k-~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
.+.+|+++++.++..+..+...+.... ..+-+.+-...--.++.++..++..+...|..+
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555554443210 011122233444455666666666666665543
No 127
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.59 E-value=27 Score=32.16 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 027291 151 FEAMKNAIEVAHAAANRWTDNIFTLQQWCSN 181 (225)
Q Consensus 151 i~~~k~~~~~~k~aanrwTDNI~~l~~~~~k 181 (225)
++.-..-+..+-..-.||+.++..+..-+..
T Consensus 279 l~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~ 309 (344)
T PF12777_consen 279 LERAEKLISGLSGEKERWSEQIEELEEQLKN 309 (344)
T ss_dssp HHHHHHHHHCCHHHHHCCHCHHHHHHHHHHH
T ss_pred hccHHHHHhhhcchhhhHHHHHHHHHHHhcc
Confidence 4444444555566667777776666555443
No 128
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=69.54 E-value=1.2e+02 Score=29.86 Aligned_cols=151 Identities=15% Similarity=0.230 Sum_probs=78.0
Q ss_pred HHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHH---HH--------------------
Q 027291 30 KELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNV---YR-------------------- 86 (225)
Q Consensus 30 KELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~---~~-------------------- 86 (225)
.++-++..+..|.---.+.++.-|. .+|. ||-|+|=.+.|+..+.-+.- ++
T Consensus 52 ~~~~~~l~~~~i~Y~~c~~i~~iL~-----~te~-~skn~fG~yss~rmk~W~~Iv~~yeK~n~~L~E~a~~L~r~v~Ye 125 (507)
T PF05600_consen 52 DEIVQLLSGSYINYFHCKRIVEILK-----QTEA-DSKNIFGRYSSQRMKDWQEIVKLYEKDNLYLAEAAQILVRNVNYE 125 (507)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHh-----CCCc-cccceeccccchhHHHHHHHHHHHHhccchHHHHHHHHHHHhccc
Confidence 3344444445555555555555544 4555 78899999988843332221 11
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 027291 87 --KLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAA 164 (225)
Q Consensus 87 --~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~a 164 (225)
.+++++.++++.+.++..+..+..... ..-|...-..+++|.-+-..++.||..+-..=|..+.+.-+.+..+..|
T Consensus 126 IP~lkKqi~k~~q~~~d~~kk~~e~~~~~--~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i~~~i~~l~~a 203 (507)
T PF05600_consen 126 IPALKKQIAKCQQQLEDLDKKEEELQRSA--AEARERYKKACKQLGIKGENIREELLELVKELPSLFDEIVEAISDLQEA 203 (507)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 144445555554444444444433321 1123333333444444445566666665555566666666666555555
Q ss_pred HHhhh-----------hhHHHHHHHHHhhCCCCHH
Q 027291 165 ANRWT-----------DNIFTLQQWCSNNFPQAKE 188 (225)
Q Consensus 165 anrwT-----------DNI~~l~~~~~kk~~~~~~ 188 (225)
++.+. ..+.-+..|+..+-+...-
T Consensus 204 ie~Y~~f~~~~~~~~~~~~Lp~L~~v~~~gn~tvy 238 (507)
T PF05600_consen 204 IEYYQAFVEFVHDESESEVLPLLRFVQEHGNTTVY 238 (507)
T ss_pred HHHHHHHHHHHHcCccchhhHHHHHHHhCCCCcHh
Confidence 44332 3456667777765544433
No 129
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.50 E-value=80 Score=27.86 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhh-
Q 027291 118 EREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKD- 196 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~- 196 (225)
++..|+.+.....+++......+..+. ..|.+.+.+.....+.|+|-.+=+.-|++. ++.++++
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE----~iIkqa~~er~~~~~~i~r~~eey~~Lk~~-----------in~~R~e~ 104 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLE----NIIKQAESERNKRQEKIQRLYEEYKPLKDE-----------INELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 445555555555555555555544443 245666666677777777777644444443 3346667
Q ss_pred cCCCC
Q 027291 197 VGIPE 201 (225)
Q Consensus 197 fgIp~ 201 (225)
+|++.
T Consensus 105 lgl~~ 109 (230)
T PF10146_consen 105 LGLEP 109 (230)
T ss_pred cCCCC
Confidence 77764
No 130
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.49 E-value=93 Score=28.63 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 027291 84 VYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHA 163 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~ 163 (225)
-...|...++.++.....|...++.+.. ---.+.+.+..|+.++..|+.--..+..|||+.+..++..+.....
T Consensus 145 Lk~~L~~~~~~l~~D~~~L~~~~~~l~~------~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ 218 (312)
T smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNS------IKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQ 218 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3334445555555555555444444322 2345566677777777777777777777788777777766655544
Q ss_pred HHHhhhh
Q 027291 164 AANRWTD 170 (225)
Q Consensus 164 aanrwTD 170 (225)
.+..--.
T Consensus 219 ei~~~~~ 225 (312)
T smart00787 219 EIMIKVK 225 (312)
T ss_pred HHHHHHH
Confidence 4433333
No 131
>PRK03918 chromosome segregation protein; Provisional
Probab=69.44 E-value=91 Score=31.90 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
+...++.++.++..++.++.+++..++...
T Consensus 624 ~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~ 653 (880)
T PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELE 653 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555554
No 132
>PRK00767 transcriptional regulator BetI; Validated
Probab=68.92 E-value=12 Score=30.43 Aligned_cols=56 Identities=11% Similarity=0.206 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 2 SKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 2 m~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
|||.+.+ +++|.+||+--.+ +....|....|+.+|.+.. -++.+.+||.|||+..-
T Consensus 1 ~~~~~~~-~~~r~~Il~aA~~------------lf~~~G~~~~s~~~Ia~~a---------Gvs~gslY~~F~~Ke~L 56 (197)
T PRK00767 1 MPKVGME-PIRRQQLIDATLR------------AIGEVGLLDATIAQIARRA---------GVSTGIISHYFGGKDGL 56 (197)
T ss_pred CCCCccc-hhHHHHHHHHHHH------------HHHHcCcccCCHHHHHHHh---------CCCHHHHHHHhCCHHHH
Confidence 6766666 5699999764432 2344688899999987764 36778899999997653
No 133
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=68.81 E-value=92 Score=28.29 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=32.9
Q ss_pred CccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 25 DFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 25 ~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
.=|||++++.. +|+-.-...|.+++.+.|..|.+ |=||-.||+...-
T Consensus 56 ~sftl~~~~~~---~~~~~~~~~~e~~Sv~ses~V~V------ngY~Vk~S~~sil 102 (269)
T PF05278_consen 56 QSFTLSEIECM---KGLKTNEGDEEMSSVISESIVSV------NGYQVKPSQVSIL 102 (269)
T ss_pred ccccHHHHHHH---hcccccccchhhhhccccceeeE------CCEEEcHhHHHHH
Confidence 34678887765 35555577888888887877654 4599999976543
No 134
>COG1422 Predicted membrane protein [Function unknown]
Probab=68.70 E-value=31 Score=30.02 Aligned_cols=50 Identities=10% Similarity=0.234 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 90 SDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 90 ~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
++.+++++..++++++..++++.++ ...++++++-+.+....+.|+-+.+
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d-----~~~lkkLq~~qmem~~~Q~elmk~q 121 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGD-----MKKLKKLQEKQMEMMDDQRELMKMQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777776554 4667788888888888888887655
No 135
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=68.62 E-value=6.1 Score=25.75 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.0
Q ss_pred chHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 28 LLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 28 tlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
+..||-.. -||+..+|...++.|.++|+|...
T Consensus 22 s~~~la~~---~~vs~~tv~~~l~~L~~~g~i~~~ 53 (60)
T smart00345 22 SERELAAQ---LGVSRTTVREALSRLEAEGLVQRR 53 (60)
T ss_pred CHHHHHHH---HCCCHHHHHHHHHHHHHCCCEEEe
Confidence 66665444 599999999999999999999643
No 136
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=68.13 E-value=65 Score=32.06 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=31.4
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 88 LESDLQSS--KKRHTELVEQCNALKKGREE-SDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 88 l~~~i~~~--~~~i~~l~~~ie~~k~~r~~-~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
+++.++++ ..++++++.++++.+.+.-. -.+..+..+++.+|+.+.+..+..+..+.
T Consensus 180 w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~ 239 (555)
T TIGR03545 180 WKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAK 239 (555)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455 56677788888888776422 23444555555555555544444444433
No 137
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.04 E-value=82 Score=31.88 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=43.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcc-------CccchHH-HHhhccCCCc------chhcHHHHHHHhhhcCccccccccc
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQ-------DFYLLKE-LEKLGPKKGV------ITQSVKDVVQSLVDDDLVLKDKIGT 66 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~-------~~ytlKE-LEK~~pKkGI------~~~~VKdvlQ~LVDDglV~~EKiGs 66 (225)
|++.||+|..| +++|.++.. ++-.+-+ .+|+|.+-|= ..++|-+=-+.| ..-++|.
T Consensus 269 ~~S~r~~~~~e----Vve~I~~lG~PvvVAtDVtp~P~~V~KiAasf~A~ly~P~~dLsveEK~~~~------r~~~~~~ 338 (652)
T COG2433 269 LESRRGIDRSE----VVEFISELGKPVVVATDVTPAPETVKKIAASFNAVLYTPDRDLSVEEKQEAL------RTLKISV 338 (652)
T ss_pred eeccccCCHHH----HHHHHHHcCCceEEEccCCCChHHHHHHHHHcCCcccCCcccCCHHHHHHHH------hhcCCCC
Confidence 46778888765 677777643 3333333 3455544221 134444444422 2223333
Q ss_pred eeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 027291 67 SVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTE 101 (225)
Q Consensus 67 sN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~ 101 (225)
+|= ---++..+....+..+...+...+.++.+
T Consensus 339 ~dd---H~RDALAAA~kAY~~yk~kl~~vEr~~~~ 370 (652)
T COG2433 339 SDD---HERDALAAAYKAYLAYKPKLEKVERKLPE 370 (652)
T ss_pred CCc---hHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 331 11245555556666666666666655444
No 138
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=68.01 E-value=22 Score=24.89 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=4.3
Q ss_pred HHHHHhhCCC
Q 027291 176 QQWCSNNFPQ 185 (225)
Q Consensus 176 ~~~~~kk~~~ 185 (225)
..+.++++||
T Consensus 58 e~~AR~~lgm 67 (80)
T PF04977_consen 58 EKVAREKLGM 67 (80)
T ss_pred HHHHHHHcCC
Confidence 3344444444
No 139
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.98 E-value=13 Score=30.11 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=47.7
Q ss_pred CCHHHH---HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 7 LSLEEK---RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 7 lS~eEK---r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
.|.+|+ ..+|+++.+++.- .|++|++.+ .|.+--||+.++..||.-|-|-. +.+|=.|||+....
T Consensus 5 ~T~eer~eLk~rIvElVRe~GR-iTi~ql~~~---TGasR~Tvk~~lreLVa~G~l~~-----~G~~GvF~seqA~~ 72 (127)
T PF06163_consen 5 FTPEEREELKARIVELVREHGR-ITIKQLVAK---TGASRNTVKRYLRELVARGDLYR-----HGRSGVFPSEQARK 72 (127)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC-ccHHHHHHH---HCCCHHHHHHHHHHHHHcCCeEe-----CCCccccccHHHHH
Confidence 677766 4577888777654 588888764 69999999999999999875543 23334799976433
No 140
>PRK09039 hypothetical protein; Validated
Probab=67.85 E-value=1e+02 Score=28.55 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHH----HHHhhhhhHH
Q 027291 122 ALEELKAVELKHIELKDEMGQYADND---PAAFEAMKNAIEVAHA----AANRWTDNIF 173 (225)
Q Consensus 122 ll~~l~~L~~~~~~l~~el~~~~~~D---p~~i~~~k~~~~~~k~----aanrwTDNI~ 173 (225)
|-+++..|+.++..|+.+|.....-+ -..|+.+...+..+.. .+.+|-+++|
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~ 200 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFF 200 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33556667777777777776666554 2567777777777743 4677777775
No 141
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.63 E-value=99 Score=31.11 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------CCHHHHHH
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD------NDPAAFEA 153 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~------~Dp~~i~~ 153 (225)
.....+..|+++++.+...+..+...++.... +...+..++.+.+.+..+++.++.-... ..++-|++
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~------~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~k 398 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKS------SLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAK 398 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 44555666666666666666666666655544 3344555555555555555555544332 23456655
Q ss_pred HHHHHHH----HHHHHHhhh
Q 027291 154 MKNAIEV----AHAAANRWT 169 (225)
Q Consensus 154 ~k~~~~~----~k~aanrwT 169 (225)
+..-+.. ...-++.|.
T Consensus 399 L~~~v~~s~~rl~~L~~qWe 418 (594)
T PF05667_consen 399 LQALVEASEQRLVELAQQWE 418 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 5544432 344455665
No 142
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=67.56 E-value=62 Score=31.20 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027291 124 EELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 124 ~~l~~L~~~~~~l~~el~~~ 143 (225)
..+.++++.++.+...|.++
T Consensus 87 ~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 87 DDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred hHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444333
No 143
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.36 E-value=94 Score=27.84 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHH
Q 027291 124 EELKAVELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEEL 190 (225)
Q Consensus 124 ~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~ 190 (225)
.++++++.++++|+.+...+.+. -|..+.+++.....+-..+..- .-+.+.+-.+..||..++++
T Consensus 163 ~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~--e~~~i~dl~~et~~l~p~di 230 (290)
T COG4026 163 AEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELP--EEELISDLVKETLNLAPKDI 230 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccch--HHHHHHHHHHHHhccCchhc
Confidence 33444444444444444333321 2444445444444333332211 12333444456888888875
No 144
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=67.15 E-value=1.1e+02 Score=28.49 Aligned_cols=73 Identities=22% Similarity=0.304 Sum_probs=37.9
Q ss_pred CccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHH
Q 027291 57 DLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIEL 136 (225)
Q Consensus 57 glV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l 136 (225)
-.+..+.+|+.++. .+...+-..++++..+++.++..+..+-. +-.++..+....+....+|
T Consensus 112 ~r~~~~~~~~~~~~-----~ere~lV~qLEk~~~q~~qLe~d~qs~lD-------------EkeEl~~ERD~yk~K~~RL 173 (319)
T PF09789_consen 112 QRVGDEGIGARHFP-----HEREDLVEQLEKLREQIEQLERDLQSLLD-------------EKEELVTERDAYKCKAHRL 173 (319)
T ss_pred hhhhhccccccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 34555677887655 33444444444444444444444444443 3445555555555556666
Q ss_pred HHHHHHHhhCC
Q 027291 137 KDEMGQYADND 147 (225)
Q Consensus 137 ~~el~~~~~~D 147 (225)
..||.-.-..|
T Consensus 174 N~ELn~~L~g~ 184 (319)
T PF09789_consen 174 NHELNYILNGD 184 (319)
T ss_pred HHHHHHHhCCC
Confidence 66665544443
No 145
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=66.95 E-value=1.5e+02 Score=30.80 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027291 123 LEELKAVELKHIELKDEM 140 (225)
Q Consensus 123 l~~l~~L~~~~~~l~~el 140 (225)
-.++..+..++..++.++
T Consensus 439 ~~~~~~~~~~~~~l~~~~ 456 (1179)
T TIGR02168 439 QAELEELEEELEELQEEL 456 (1179)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 146
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.84 E-value=38 Score=34.03 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
+.+|.++.+|+.++-.|++.+..+..+
T Consensus 166 ~RllseYSELEEENIsLQKqVs~LR~s 192 (772)
T KOG0999|consen 166 ARLLSEYSELEEENISLQKQVSNLRQS 192 (772)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhhh
Confidence 378899999999999999999988876
No 147
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=66.53 E-value=62 Score=25.44 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 027291 149 AAFEAMKNAIEVAHA 163 (225)
Q Consensus 149 ~~i~~~k~~~~~~k~ 163 (225)
+.+.++.-+...++.
T Consensus 77 eK~ak~~l~~r~~k~ 91 (107)
T PF09304_consen 77 EKQAKLELESRLLKA 91 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 148
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=66.52 E-value=16 Score=26.19 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=44.3
Q ss_pred HHHHHHH----hhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 14 GKILEIF----YESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 14 ~ril~~f----~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
+.|+.+| .....--...+|=.++..-||...+|.=-|--|+.+|++...+.|-..+|
T Consensus 4 Sli~tl~Gdy~~~~g~~i~~~~Li~ll~~~Gv~e~avR~alsRl~~~G~L~~~r~Gr~~~Y 64 (70)
T PF07848_consen 4 SLIVTLLGDYLRPRGGWIWVASLIRLLAAFGVSESAVRTALSRLVRRGWLESERRGRRSYY 64 (70)
T ss_dssp HHHHHHHHHHCCTTTS-EEHHHHHHHHCCTT--HHHHHHHHHHHHHTTSEEEECCCTEEEE
T ss_pred eehHHHHHHHhccCCCceeHHHHHHHHHHcCCChHHHHHHHHHHHHcCceeeeecCccceE
Confidence 4556666 23455567888889999999999999999999999999999999986555
No 149
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=66.46 E-value=53 Score=26.53 Aligned_cols=60 Identities=25% Similarity=0.427 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHh
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYK 195 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~ 195 (225)
..|...++++.+|+.+...+-. -++ ||+.+..++. |.- ...+|+.+.+|+.++.++.+.+
T Consensus 69 ~kr~~Vl~~l~~l~~~~~~v~~---~~~--~~ev~~~l~~-------------dk~-~nl~~L~~~h~it~e~id~LY~ 128 (133)
T PF09440_consen 69 EKREEVLAELKELEEETEPVLE---LLE--DPEVVKNLRS-------------DKK-QNLEYLEENHGITPEMIDALYK 128 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHc--CHHHHHHHHc-------------cHH-HHHHHHHHhcCCCHHHHHHHHH
Confidence 4577888888887777766633 223 8888877665 332 3466999999999999887653
No 150
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.24 E-value=1.1e+02 Score=34.08 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027291 88 LESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
+...+.++..++..|+...+.+.
T Consensus 312 I~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 312 MARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 151
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=66.08 E-value=14 Score=32.74 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.|++.=+|--.||++|..+..-.++.||=+. .|+..-||=-+|++|++.|+|..+.
T Consensus 19 ~~~~sl~r~l~IL~~~~~~~~~~tl~eIa~~---lglpkStv~RlL~tL~~~G~l~~~~ 74 (271)
T PRK10163 19 KGAQALERGIAILQYLEKSGGSSSVSDISLN---LDLPLSTTFRLLKVLQAADFVYQDS 74 (271)
T ss_pred ccchHHHHHHHHHHHHHhCCCCcCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEEcC
Confidence 4678888999999999988888999887443 6889999999999999999997763
No 152
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=65.92 E-value=1.1e+02 Score=28.38 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHH---------HHHhhhhhHHHHHHHHH
Q 027291 147 DPAAFEAMKNAIEVAHA---------AANRWTDNIFTLQQWCS 180 (225)
Q Consensus 147 Dp~~i~~~k~~~~~~k~---------aanrwTDNI~~l~~~~~ 180 (225)
..+.+.+++.+|+.+.. -+.|+|=++..|+.-+.
T Consensus 241 sE~Ql~ELRadIK~fvs~rk~de~lg~~~rf~~d~~~l~~~i~ 283 (302)
T PF07139_consen 241 SEEQLAELRADIKHFVSERKYDEELGRAARFTCDPEQLKKSIM 283 (302)
T ss_pred CHHHHHHHHHHHHHHhhhhhhHHHHhHhhhcccCHHHHHHHHH
Confidence 56777777777776654 38889988888887765
No 153
>PF10562 CaM_bdg_C0: Calmodulin-binding domain C0 of NMDA receptor NR1 subunit; InterPro: IPR018882 This is a very short highly conserved domain that is C-terminal to the cytosolic transmembrane region IV of the NMDA-receptor 1. It has been shown to bind Calmodulin-Calcium with high affinity. The ionotropic N-methyl-D-aspartate receptor (NMDAR) is a major source of calcium flux into neurons in the brain and plays a critical role in learning, memory, neural development, and synaptic plasticity. Calmodulin (CaM) regulates NMDARs by binding tightly to the C0 and C1 regions of their NR1 subunit. The conserved tryptophan is considered to be the anchor residue [].
Probab=65.91 E-value=7.8 Score=23.44 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhhhH
Q 027291 153 AMKNAIEVAHAAANRWTDNI 172 (225)
Q Consensus 153 ~~k~~~~~~k~aanrwTDNI 172 (225)
.++++++.++.++++|-.||
T Consensus 9 ~kqk~~elAr~a~dkWR~~i 28 (29)
T PF10562_consen 9 RKQKQLELARHAADKWRGNI 28 (29)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 35677889999999999987
No 154
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=65.86 E-value=22 Score=32.58 Aligned_cols=56 Identities=32% Similarity=0.469 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
...+..+.++++.++.+..++.+.+..+.. ++..+.+++..|+.+.+.+..+-..|
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~------e~~~l~~el~~le~e~~~l~~eE~~~ 97 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEK------EREELDQELEELEEELEELDEEEEEY 97 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777666666666644 55666666666666666665544443
No 155
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=65.75 E-value=66 Score=32.47 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAI 158 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~ 158 (225)
.+....++.....|..+...+..++.....+...- ...=..+-++++.....+++++.+|+.++ | ++++++++
T Consensus 281 ~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~--~~qI~~le~~l~~~~~~leel~~kL~~~s--D---YeeIK~EL 353 (629)
T KOG0963|consen 281 DALGSVLNQKDSEIAQLSNDIERLEASLVEEREKH--KAQISALEKELKAKISELEELKEKLNSRS--D---YEEIKKEL 353 (629)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhc--c---HHHHHHHH
Confidence 33334444444444444444444444443322100 01123444556666666777777777775 4 67788888
Q ss_pred HHHHH-------HHHhhhhhHHHHHHHHHh
Q 027291 159 EVAHA-------AANRWTDNIFTLQQWCSN 181 (225)
Q Consensus 159 ~~~k~-------aanrwTDNI~~l~~~~~k 181 (225)
.+++. .|+-|.++.-.+.+-+-.
T Consensus 354 siLk~ief~~se~a~~~~~~~~~leslLl~ 383 (629)
T KOG0963|consen 354 SILKAIEFGDSEEANDEDETAKTLESLLLE 383 (629)
T ss_pred HHHHHhhcCCcccccccccccchHHHHHHH
Confidence 88875 377777666676666544
No 156
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.67 E-value=31 Score=29.32 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=9.6
Q ss_pred ccCCCcchhcHHHHHHHhhh
Q 027291 36 GPKKGVITQSVKDVVQSLVD 55 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVD 55 (225)
||-.|.-..-|-|-++.+++
T Consensus 79 C~ERGlLL~rvrde~~~~l~ 98 (189)
T PF10211_consen 79 CPERGLLLLRVRDEYRMTLD 98 (189)
T ss_pred cHHHhHHHHHHHHHHHHHHH
Confidence 34445444445555555444
No 157
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=65.61 E-value=1.3e+02 Score=30.75 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--C-HHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKG-REESDEREEALEELKAVELKHIELKDEMGQYADN--D-PAAFEAMKN 156 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~-r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~--D-p~~i~~~k~ 156 (225)
++..+.+|..++...+..+..++..+.+++.- ++...+-+.|+..|..++.+...|+..|..=-.. | =-.+-.-++
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akr 629 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKR 629 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555443 5544567899999999999999998877542211 1 123444455
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHH
Q 027291 157 AIEVAHAAANRWTDNIFTLQQWCSNNFPQAKE 188 (225)
Q Consensus 157 ~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~ 188 (225)
+++++...+-.=-.-|.-|+.-+..-..+-|.
T Consensus 630 q~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 630 QLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 55555555555555666666666555544443
No 158
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=65.53 E-value=7.6 Score=30.16 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=41.8
Q ss_pred HHHHHHHHhhc--cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc-eeeEEcccch
Q 027291 13 RGKILEIFYES--QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT-SVYFWSLPSC 76 (225)
Q Consensus 13 r~ril~~f~e~--~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs-sN~YWsFps~ 76 (225)
.-+++-++... ....+..+| +...||...+|..+++.|+..|+|.... |. +.|.++-|.+
T Consensus 10 al~~l~~la~~~~~~~~s~~ei---a~~~~i~~~~v~~il~~L~~~gli~~~~-g~~ggy~l~~~~~ 72 (132)
T TIGR00738 10 ALRALLDLALNPDEGPVSVKEI---AERQGISRSYLEKILRTLRRAGLVESVR-GPGGGYRLARPPE 72 (132)
T ss_pred HHHHHHHHHhCCCCCcCcHHHH---HHHHCcCHHHHHHHHHHHHHCCcEEecc-CCCCCccCCCCHH
Confidence 34555566544 447788777 4446899999999999999999998754 43 4455554443
No 159
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=65.51 E-value=20 Score=24.96 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
.|.+|+..+... .-.+..+|-... |+...+|--.|..|-+.|+|.....|...+|
T Consensus 26 ~r~~il~~l~~~-~~~~~~~l~~~~---~~~~~~v~~hL~~L~~~glv~~~~~~~~~~~ 80 (110)
T COG0640 26 TRLEILSLLAEG-GELTVGELAEAL---GLSQSTVSHHLKVLREAGLVELRREGRLRLY 80 (110)
T ss_pred HHHHHHHHHHhc-CCccHHHHHHHH---CCChhHHHHHHHHHHHCCCeEEEecccEEEE
Confidence 678888888876 222244444444 7889999999999999999999999988444
No 160
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=65.24 E-value=57 Score=31.08 Aligned_cols=83 Identities=13% Similarity=0.234 Sum_probs=49.9
Q ss_pred cccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 63 KIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 63 KiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~ 142 (225)
=+|.+-|||. .+...........|+.++..+..........++.... .-+..-..+-.++.++..++..|+..+..
T Consensus 49 a~g~g~y~~~--~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~--~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ 124 (390)
T PRK10920 49 AAGAGLYYHG--KQQAQNQTATNDALANQLTALQKAQESQKQELEGILK--QQAKALDQANRQQAALAKQLDELQQKVAT 124 (390)
T ss_pred HHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888883 3555555667777777776665554433333332211 01112234445677888888888888888
Q ss_pred HhhCCHH
Q 027291 143 YADNDPA 149 (225)
Q Consensus 143 ~~~~Dp~ 149 (225)
++..+|.
T Consensus 125 ls~~~~~ 131 (390)
T PRK10920 125 ISGSDAK 131 (390)
T ss_pred HhCCChh
Confidence 8877764
No 161
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.12 E-value=1.1e+02 Score=27.77 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=22.2
Q ss_pred cccchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 72 SLPSCAGNQLRNV-YRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 72 sFps~~~~~~~~~-~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
+|++-.+...-.. +..-+.++..+......++..|+.+-.
T Consensus 19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~ 59 (265)
T COG3883 19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDN 59 (265)
T ss_pred hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333 555666666666666666666665544
No 162
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.01 E-value=90 Score=33.26 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC-----------CHHHHHHHHHHHHHHHHHHHhh
Q 027291 101 ELVEQCNALKKGREESDERE-EALEELKAVELKHIELKDEMGQYADN-----------DPAAFEAMKNAIEVAHAAANRW 168 (225)
Q Consensus 101 ~l~~~ie~~k~~r~~~~eR~-~ll~~l~~L~~~~~~l~~el~~~~~~-----------Dp~~i~~~k~~~~~~k~aanrw 168 (225)
++.+.|+-+...++=.++|. .|-.+++.+++++.+|..+|+-++.- ....+.++..+...+|+++.|.
T Consensus 308 d~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 308 DTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRL 387 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333345565 33345666666666665555554421 2345556666666666665555
Q ss_pred hh
Q 027291 169 TD 170 (225)
Q Consensus 169 TD 170 (225)
-|
T Consensus 388 RD 389 (1243)
T KOG0971|consen 388 RD 389 (1243)
T ss_pred Hh
Confidence 54
No 163
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=64.94 E-value=23 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=27.3
Q ss_pred cchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 27 YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 27 ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.+..|| |...|++..+|-.+++.|+++|+|....
T Consensus 26 ~s~~el---a~~~g~s~~tv~r~l~~L~~~g~i~~~~ 59 (67)
T cd00092 26 LTRQEI---ADYLGLTRETVSRTLKELEEEGLISRRG 59 (67)
T ss_pred cCHHHH---HHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 454444 3446899999999999999999998875
No 164
>PLN02320 seryl-tRNA synthetase
Probab=64.83 E-value=43 Score=33.00 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=47.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 75 SCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 75 s~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
-+....+..+...+..+++.++.+...+..+|.. +.. ..++.+++++..+|..++..|+.++..+.
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~---~~~~~~l~~~~k~lk~~i~~le~~~~~~~ 157 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKG-KLE---PSERQALVEEGKNLKEGLVTLEEDLVKLT 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777778888888888888888888865 221 13567777777777777777777665554
No 165
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=64.67 E-value=2.2 Score=35.49 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=47.7
Q ss_pred ccchHHHHhhccC----CCcchhcHHHHHHHhhhcCcccc---ccccceeeEEcccchhhhhHHHH
Q 027291 26 FYLLKELEKLGPK----KGVITQSVKDVVQSLVDDDLVLK---DKIGTSVYFWSLPSCAGNQLRNV 84 (225)
Q Consensus 26 ~ytlKELEK~~pK----kGI~~~~VKdvlQ~LVDDglV~~---EKiGssN~YWsFps~~~~~~~~~ 84 (225)
+-=|.|+||..|. +.++.+.|-+.|-.++|+|.|.- ..|.++|.+|-|-|-........
T Consensus 71 VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~ 136 (171)
T PF07724_consen 71 VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIID 136 (171)
T ss_dssp EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHH
T ss_pred hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhh
Confidence 5557899999993 67788999999999999999963 36889999999998766554443
No 166
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=64.33 E-value=5.6 Score=24.96 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=24.7
Q ss_pred hccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 35 LGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 35 ~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
+|...|++..+|-.+|..|.+.|+|..++
T Consensus 14 la~~l~~s~~tv~~~l~~L~~~g~l~~~~ 42 (48)
T smart00419 14 IAELLGLTRETVSRTLKRLEKEGLISREG 42 (48)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34446899999999999999999998765
No 167
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=64.30 E-value=24 Score=28.02 Aligned_cols=46 Identities=17% Similarity=0.085 Sum_probs=35.3
Q ss_pred ccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 64 IGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 64 iGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
+|++-|..--..++...+..+++.|.+.++.+...+..++..++..
T Consensus 82 lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 82 LGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888887777788888888888888888888777777777666544
No 168
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=63.94 E-value=1.2e+02 Score=27.81 Aligned_cols=80 Identities=10% Similarity=0.181 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CHHHHHHHHHH
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNALKKGRE--E-SDEREEALEELKAVELKHIELKDEMGQYADN----DPAAFEAMKNA 157 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~--~-~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~----Dp~~i~~~k~~ 157 (225)
+.-+++++..++.+..+++.++..-+.... + ...-......+.+|+.++..++.+|..+... .|. +..++.+
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~-v~~l~~~ 250 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ-VPSLQAR 250 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc-hHHHHHH
Confidence 334566666666677777766666555332 2 2334567888999999999999998877643 453 3344444
Q ss_pred HHHHHHHH
Q 027291 158 IEVAHAAA 165 (225)
Q Consensus 158 ~~~~k~aa 165 (225)
+..+...+
T Consensus 251 i~~l~~~i 258 (362)
T TIGR01010 251 IKSLRKQI 258 (362)
T ss_pred HHHHHHHH
Confidence 44444443
No 169
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=63.84 E-value=78 Score=27.80 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh----hCC
Q 027291 116 SDEREEALEELKAVELKHIELKDEMGQYAD-------NDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSN----NFP 184 (225)
Q Consensus 116 ~~eR~~ll~~l~~L~~~~~~l~~el~~~~~-------~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~k----k~~ 184 (225)
...+.++..+...|..++...+.+|..+.. +|...++.+...-+.+.+ +=++-|...+.. +|.
T Consensus 130 ~~~~~el~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q------~~l~eL~~~~~~~e~~~~T 203 (221)
T PF10376_consen 130 ELKQQELEEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQ------EALYELQSEMSEEEGEKFT 203 (221)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHH------HHHHHHHHHHhhccccCcc
Confidence 345677777777888887777777766653 232233332222222222 123345555444 333
Q ss_pred CCHHHHHHHHhhcCCCCCccc
Q 027291 185 QAKEELEQMYKDVGIPEDFDY 205 (225)
Q Consensus 185 ~~~~~~~~l~~~fgIp~d~dy 205 (225)
| .+ |-+.|||++++=|
T Consensus 204 M--~e---L~~~l~ID~~LI~ 219 (221)
T PF10376_consen 204 M--GE---LIKRLGIDYDLIH 219 (221)
T ss_pred H--HH---HHHHhCCCccccC
Confidence 3 23 6779999988644
No 170
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=63.79 E-value=19 Score=26.21 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=31.4
Q ss_pred ccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhH
Q 027291 36 GPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQL 81 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~ 81 (225)
|..-||+..+|-..|+.|+..|+|.....+ +.+++......
T Consensus 6 a~~l~is~stvs~~l~~L~~~glI~r~~~~-----~~~lT~~g~~~ 46 (96)
T smart00529 6 AERLNVSPPTVTQMLKKLEKDGLVEYEPYR-----GITLTEKGRRL 46 (96)
T ss_pred HHHhCCChHHHHHHHHHHHHCCCEEEcCCC-----ceEechhHHHH
Confidence 333699999999999999999999998753 35565555443
No 171
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.67 E-value=1.6e+02 Score=29.05 Aligned_cols=55 Identities=11% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 027291 127 KAVELKHIELKDEMGQYAD---NDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSN 181 (225)
Q Consensus 127 ~~L~~~~~~l~~el~~~~~---~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~k 181 (225)
.++...++.+..+|..|.+ .||+.++.+...+..+.....++...+.-+..|..+
T Consensus 276 ~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~ 333 (563)
T TIGR00634 276 GNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEK 333 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3333444444455555554 388888888888888777777777666666666553
No 172
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=63.46 E-value=1.1e+02 Score=33.01 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=17.8
Q ss_pred hhcHHHHHHHhhhcCcccccccc
Q 027291 43 TQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 43 ~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
.-+|+..++.++|++=+.-+.|-
T Consensus 318 ~teiea~i~~~~~e~~~~d~Ei~ 340 (1074)
T KOG0250|consen 318 LTEIEAKIGELKDEVDAQDEEIE 340 (1074)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHH
Confidence 46788889999988877777664
No 173
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=63.41 E-value=70 Score=30.52 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
..+..+++.|.+++..++.++..++..+.....
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345666677888888888888888888777655
No 174
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.39 E-value=43 Score=29.02 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027291 89 ESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 89 ~~~i~~~~~~i~~l~~~ie~~ 109 (225)
...+.++++++++++.++...
T Consensus 92 ~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444444
No 175
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=63.26 E-value=57 Score=31.92 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=7.7
Q ss_pred CcchhcHHHHHHHhh
Q 027291 40 GVITQSVKDVVQSLV 54 (225)
Q Consensus 40 GI~~~~VKdvlQ~LV 54 (225)
||-+-+=.|-|-.||
T Consensus 51 GiegDTP~DTlrTlv 65 (472)
T TIGR03752 51 GIEGDTPADTLRTLV 65 (472)
T ss_pred CCCCCCccchHHHHH
Confidence 555555555555554
No 176
>PF10796 Anti-adapt_IraP: Sigma-S stabilisation anti-adaptor protein ; InterPro: IPR019732 This entry is conserved in Enterobacteriaceae. It is one of a series of proteins, expressed by these bacteria in response to stress, that help to regulate Sigma-S, the stationary phase sigma factor of Escherichia coli and Salmonella. IraP is essential for Sigma-S stabilisation in some but not all starvation conditions []. ; GO: 0005737 cytoplasm
Probab=63.24 E-value=44 Score=25.24 Aligned_cols=65 Identities=23% Similarity=0.219 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------hCCHHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHhhCCC
Q 027291 121 EALEELKAVELKHIELKDEMGQYA--------DNDPAAFEAMKNAIEVAHAAANRWTD-----NIFTLQQWCSNNFPQ 185 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~--------~~Dp~~i~~~k~~~~~~k~aanrwTD-----NI~~l~~~~~kk~~~ 185 (225)
.+|.++.+.+.+-++|..+++.++ ..++...+.+...+..+.+.|..=.| +...|..|+.+-..+
T Consensus 7 ~lL~KlA~~e~esKeL~AqVEAleivitALL~~l~~~~~~~~i~~I~~Ai~~a~~~~~~~~~sd~eLL~~~~~~Ll~~ 84 (87)
T PF10796_consen 7 ELLAKLAEKEAESKELTAQVEALEIVITALLRTLDQGGRQEMIESIEKAIEDASPSSDVPLKSDAELLLQYVKKLLRH 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHhcccCCccchHHHHHHHHHHHHHHhc
Confidence 455556666666666666665554 33788888888888888888776444 477888888765443
No 177
>PHA01750 hypothetical protein
Probab=63.21 E-value=18 Score=26.17 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
.+..+.+|..++++++.++.++++++.+.+
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555566666666666666666665554
No 178
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.21 E-value=1e+02 Score=26.89 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKD 138 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~ 138 (225)
..++.++..|..+++.|+.
T Consensus 52 ~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.08 E-value=1.1e+02 Score=27.04 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHHh
Q 027291 97 KRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAHAAANR 167 (225)
Q Consensus 97 ~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~aanr 167 (225)
.-+.++...++.+. .||...+++|......+..|...+...... --+.+..+..+...+++.+|+
T Consensus 32 ~~L~e~~kE~~~L~------~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 32 KCLEEYRKEMEELL------QERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443 377888888877777777777777665532 113445555555555555554
No 180
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=63.04 E-value=5.6 Score=27.55 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=31.3
Q ss_pred hccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 22 ESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 22 e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
+....-+.++|=+. -||++-||-+.|+.|.++|+|..++=|
T Consensus 18 ~~~~~v~~~~iA~~---L~vs~~tvt~ml~~L~~~GlV~~~~y~ 58 (60)
T PF01325_consen 18 EEGGPVRTKDIAER---LGVSPPTVTEMLKRLAEKGLVEYEPYK 58 (60)
T ss_dssp HCTSSBBHHHHHHH---HTS-HHHHHHHHHHHHHTTSEEEETTT
T ss_pred cCCCCccHHHHHHH---HCCChHHHHHHHHHHHHCCCEEecCCC
Confidence 35666677765333 589999999999999999999987643
No 181
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=62.91 E-value=1.2e+02 Score=27.70 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~ 142 (225)
..+++++.+|+.+..++..++..
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 182
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=62.11 E-value=51 Score=22.99 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 027291 118 EREEALEELKAVELKHIELKDEMGQYADNDPAAFEAM 154 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~ 154 (225)
+...+-.++.+++.++..|+.+++.+.. ||+.|++.
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l~~-~~~~ie~~ 60 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERLKN-DPDYIEKV 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 3456667788888888888888888832 88888764
No 183
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.94 E-value=91 Score=29.31 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHH
Q 027291 121 EALEELKAVELKHIELKDEMGQYADN--DPAAFEAMKNAIEVAHAAA 165 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~~~--Dp~~i~~~k~~~~~~k~aa 165 (225)
.+..+|.++..++.+.+.+++.-... |-.-+-++|+.+..++..+
T Consensus 298 ~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI 344 (359)
T PF10498_consen 298 ERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEI 344 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 33344445555555555555543322 3222445555555555543
No 184
>PRK03918 chromosome segregation protein; Provisional
Probab=61.74 E-value=1.9e+02 Score=29.53 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 027291 95 SKKRHTELVEQCNAL 109 (225)
Q Consensus 95 ~~~~i~~l~~~ie~~ 109 (225)
++..+..++..++..
T Consensus 631 ~~~~i~~l~~~i~~l 645 (880)
T PRK03918 631 AFEELAETEKRLEEL 645 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 185
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=61.33 E-value=18 Score=25.09 Aligned_cols=33 Identities=6% Similarity=0.250 Sum_probs=22.1
Q ss_pred HHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhc
Q 027291 165 ANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDV 197 (225)
Q Consensus 165 anrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~f 197 (225)
.....+.--.+..|+...+|+++++++.|+..|
T Consensus 35 l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 35 LDAIDERYGSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 333344555788999999999999999888654
No 186
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=61.33 E-value=41 Score=24.81 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=27.7
Q ss_pred cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcc
Q 027291 27 YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSL 73 (225)
Q Consensus 27 ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsF 73 (225)
|+++|+-+ ..||++.+|.-+. ..|++...+-+++.++|++
T Consensus 1 ~~~~eva~---~~gi~~~tlr~~~----~~Gll~~~~~~~g~r~y~~ 40 (100)
T cd00592 1 YTIGEVAK---LLGVSVRTLRYYE----EKGLLPPERSENGYRLYSE 40 (100)
T ss_pred CCHHHHHH---HHCcCHHHHHHHH----HCCCcCCCcCCCCCcccCH
Confidence 45555544 3699999988774 4699998887776555544
No 187
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=61.15 E-value=89 Score=25.46 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=10.6
Q ss_pred chhcHHHHHHHhh
Q 027291 42 ITQSVKDVVQSLV 54 (225)
Q Consensus 42 ~~~~VKdvlQ~LV 54 (225)
++|||.|+.+.|-
T Consensus 30 vsmSVReLNr~Lr 42 (135)
T KOG4196|consen 30 VSMSVRELNRHLR 42 (135)
T ss_pred HHhhHHHHHHHhc
Confidence 6888888888775
No 188
>PRK14127 cell division protein GpsB; Provisional
Probab=60.78 E-value=80 Score=24.78 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=48.2
Q ss_pred CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR----- 113 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r----- 113 (225)
.|..+--|-+.|+..++| ...+...+..|++++..++.++.+++.++.......
T Consensus 21 RGYd~~EVD~FLd~V~~d---------------------ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~ 79 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKD---------------------YEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATT 79 (109)
T ss_pred CCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 799999999999988873 233455666677777777777777776665432211
Q ss_pred --CCcHHHHHHHHHHHHHHHHH
Q 027291 114 --EESDEREEALEELKAVELKH 133 (225)
Q Consensus 114 --~~~~eR~~ll~~l~~L~~~~ 133 (225)
..+..--.+|+++..|++.+
T Consensus 80 ~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 80 QPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred CCCCCcchHHHHHHHHHHHHHH
Confidence 11233456777777777654
No 189
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.76 E-value=1.2e+02 Score=32.93 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhh
Q 027291 147 DPAAFEAMKNAIEVAHAAANRWT 169 (225)
Q Consensus 147 Dp~~i~~~k~~~~~~k~aanrwT 169 (225)
..+.+..+.+++..+....|+-+
T Consensus 477 ~~~e~~~~ekel~~~~~~~n~~~ 499 (1293)
T KOG0996|consen 477 IREEIEKLEKELMPLLKQVNEAR 499 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544444444444433
No 190
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=60.72 E-value=1.2e+02 Score=27.73 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CC--c--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGR----EE--S--DEREEALEELKAVELKHIELKDEMG 141 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r----~~--~--~eR~~ll~~l~~L~~~~~~l~~el~ 141 (225)
+...+++|+++...-+-.+..|++.++.-+..- .+ . -+...+++..+.|++....|..+|.
T Consensus 23 lE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 23 LEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence 334444444444444444555666665544311 10 0 1344666666666666666665553
No 191
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.71 E-value=1.3e+02 Score=30.33 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHhh
Q 027291 118 EREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANR--WTDNIFTLQQWCSNN 182 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanr--wTDNI~~l~~~~~kk 182 (225)
+...++.+++.++.+.+.+..++.... +.+.++..+...+-..+|| +|.-|+-|+.-++|+
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~~Ke----e~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQ 503 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIRQKE----ELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQ 503 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHH
Confidence 444556666666666666655554433 2233344444433333333 555555555555543
No 192
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=60.58 E-value=51 Score=32.94 Aligned_cols=26 Identities=8% Similarity=-0.094 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 119 REEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 119 R~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
-..+.+++.+++.++..+..+++.+.
T Consensus 600 ~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 600 LTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655
No 193
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=60.57 E-value=31 Score=28.10 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcc--hhcHHHHHHHhhhcCccccccccceeeEEcccchh
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVI--TQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCA 77 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~--~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~ 77 (225)
.|..++.-+.+++.+.|..||=..+.+.|+. .-||== -|.+-|+|.+-- |.+.++++.|...
T Consensus 2 ~R~~~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsR---dL~elglvk~~~-~~g~~~Y~~~~~~ 65 (146)
T TIGR01529 2 QRQERIKEIITEEKISTQEELVALLKAEGIEVTQATVSR---DLRELGAVKVRD-EDGSYVYSLPADG 65 (146)
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHH---HHHHcCCEEEEC-CCCcEEEeecccc
Confidence 5777888888999999999998888777766 334433 444459987544 8888989998765
No 194
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=60.45 E-value=55 Score=30.88 Aligned_cols=96 Identities=21% Similarity=0.250 Sum_probs=45.9
Q ss_pred HHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 32 LEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 32 LEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
|-+.-.. .|+...+ +++-+.|.+-= -++ .-+|=+.= ....-++.++++++.++++++++.+++++..
T Consensus 202 l~~~T~~R~~f~~r~-~~Yf~~l~~~f---~d~---a~~~~A~l-----~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~ 269 (406)
T PF02388_consen 202 LYKETAERKGFSIRS-LEYFENLYDAF---GDK---AKFFLAEL-----NGKEYLESLQEKLEKLEKEIEKLEEKLEKNP 269 (406)
T ss_dssp HHHHHHHHTT------HHHHHHHHHHC---CCC---EEEEEEEE-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHhhCCCcccC-HHHHHHHHHhc---CCC---eEEEEEEE-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3333334 6766654 36666666511 111 11222221 2334566788888888888888888877665
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 111 KGREESDEREEALEELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 111 ~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~ 142 (225)
.....+..+-.++..+.+++++++.-++.
T Consensus 270 ---k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 270 ---KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11112334444444445554444443333
No 195
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=60.29 E-value=18 Score=31.94 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc
Q 027291 8 SLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT 66 (225)
Q Consensus 8 S~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs 66 (225)
..++.+.+|++++.+ +.+.+++||-... ||+.+||.=-|..|-+.|+|.--.=|.
T Consensus 2 ~~~~R~~~Il~~l~~-~~~~~~~ela~~l---~vS~~TiRRdL~~Le~~g~l~r~~GGa 56 (252)
T PRK10906 2 KQTQRHDAIIELVKQ-QGYVSTEELVEHF---SVSPQTIRRDLNDLAEQNKILRHHGGA 56 (252)
T ss_pred CHHHHHHHHHHHHHH-cCCEeHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEEecCCE
Confidence 467899999999965 5578999998877 899999998899999999996544444
No 196
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=60.20 E-value=25 Score=29.33 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhccC-----ccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHH
Q 027291 11 EKRGKILEIFYESQD-----FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRN 83 (225)
Q Consensus 11 EKr~ril~~f~e~~~-----~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~ 83 (225)
.|+.+||-|+-+.-+ +.|.++| |.+.|++..||...+..|.+-|.|..- ..+.|+-=|.-..+--..
T Consensus 55 ~k~~~Vl~~il~~~d~~N~v~~t~~~i---a~~l~iS~~Tv~r~ik~L~e~~iI~k~---~~G~Y~iNP~~~~kG~~~ 126 (165)
T PF05732_consen 55 NKAFRVLMYILENMDKDNAVVATQKEI---AEKLGISKPTVSRAIKELEEKNIIKKI---RNGAYMINPNFFFKGDRD 126 (165)
T ss_pred hhHHHHHHHHHHhcCCCCeEEeeHHHH---HHHhCCCHHHHHHHHHHHHhCCcEEEc---cCCeEEECcHHheeCcHH
Confidence 578899999887544 3466665 444799999999999999999999754 344788888766554333
No 197
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=60.20 E-value=51 Score=30.84 Aligned_cols=82 Identities=17% Similarity=0.359 Sum_probs=44.4
Q ss_pred ccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 64 IGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHT-ELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 64 iGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~-~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~ 142 (225)
+|.+-||| -.+.....+.++..|..++..+..... .....+....... .+.-..+-.++..++..+..++..+..
T Consensus 43 lg~~~~~~--~~~q~~~~~~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~--~~~~~~l~~~l~~~~~~l~~l~~~~~~ 118 (372)
T PF04375_consen 43 LGAGGWYW--QQQQLQQLQQQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQ--QEQLQQLQQELAQLQQQLAELQQQLAA 118 (372)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666 222233344555566666655555555 3333333322211 111134445577778888888888888
Q ss_pred HhhCCHH
Q 027291 143 YADNDPA 149 (225)
Q Consensus 143 ~~~~Dp~ 149 (225)
+...+|.
T Consensus 119 l~~~~~~ 125 (372)
T PF04375_consen 119 LSQRSRD 125 (372)
T ss_pred HhcCChH
Confidence 8776664
No 198
>PHA02562 46 endonuclease subunit; Provisional
Probab=60.11 E-value=1.7e+02 Score=28.22 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESD-EREEALEELKAVELKHIELKDEMGQYAD----------- 145 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~-eR~~ll~~l~~L~~~~~~l~~el~~~~~----------- 145 (225)
....+..++.+..+...+..++..++..|........+-. .-..+-..+..++..+..++..+..|..
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~ 294 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQI 294 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcC
Confidence 4556666666666666666667777777766665443322 2233444555566666666666665532
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 027291 146 -NDPAAFEAMKNAIEVAHAAANRWTDNIF 173 (225)
Q Consensus 146 -~Dp~~i~~~k~~~~~~k~aanrwTDNI~ 173 (225)
.+|..+..+...+..+...+....+-|.
T Consensus 295 ~~~~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 295 SEGPDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1255555555555555555444444444
No 199
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=59.28 E-value=48 Score=33.02 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027291 121 EALEELKAVELKHIELKDEMG 141 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~ 141 (225)
.+-+++.+|+.++++++.++.
T Consensus 572 ~~e~~i~~le~~~~~~~~~~~ 592 (635)
T PRK11147 572 QLPQLLEDLEAEIEALQAQVA 592 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555553
No 200
>PF04738 Lant_dehyd_C: Lantibiotic dehydratase, C terminus; InterPro: IPR006827 Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides []. They are produced by bacteria of the Firmicutes phylum, and include mutacin, subtilin, and nisin. Lantibiotic peptides contain thioether bridges termed lanthionines that are thought to be generated by dehydration of serine and threonine residues followed by addition of cysteine residues []. This family constitutes the C terminus of the enzyme proposed to catalyse the dehydration step [, ].
Probab=59.05 E-value=43 Score=31.67 Aligned_cols=163 Identities=14% Similarity=0.196 Sum_probs=90.2
Q ss_pred HhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 027291 33 EKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKL----ESDLQSSKKRHTELVEQCN 107 (225)
Q Consensus 33 EK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l----~~~i~~~~~~i~~l~~~ie 107 (225)
+.++.. .++.+..|..+|..||+.|++-++ |-.|.....-...-++.| ....+.....+.++...+.
T Consensus 8 ~~L~~~~~~~~~~~v~~~L~~Li~~~~L~~~--------l~~p~~~~dpl~~L~~~L~~~~~~~~~~~~~~L~~l~~~~~ 79 (500)
T PF04738_consen 8 EQLAKEFPEAEAERVENYLRQLIEQGFLISE--------LRPPLTGPDPLEYLIERLAPEDIPAAAEWLARLEELQALID 79 (500)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHCCEEEec--------CCCCCCCcCHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 445545 588999999999999999999887 777877777777777776 1133344455555555555
Q ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHh---------hCCHHHHHHHHHHHHHHHHHHHhh--hhhHHHH
Q 027291 108 ALKKGREESDEREEALEELKAVELKHIELKD-EMGQYA---------DNDPAAFEAMKNAIEVAHAAANRW--TDNIFTL 175 (225)
Q Consensus 108 ~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~-el~~~~---------~~Dp~~i~~~k~~~~~~k~aanrw--TDNI~~l 175 (225)
.... .+-.+|.+.++++.+.-.++..... +-.-|. ..+...++.+.+.+..+..-.-.+ ..-....
T Consensus 80 ~~~~--~~~~~~~~~l~~i~~~~~~l~~~~~~~~~l~~D~~~~~~~~~l~~~~~~~l~~~l~~l~~l~~~~~~~~~l~~~ 157 (500)
T PF04738_consen 80 EYED--ADLGERIAALAEIEERFSELTGEPARRNLLYVDRTLDYEEITLGRNVLDELEEALELLLRLSPWYAGNQYLEEY 157 (500)
T ss_pred Hhhc--CCcccchhHHHHHHHHHHHHhcccccCcceEEEEeeccccccCCHHHHHHHHHHHHHHHHhccCcCccHHHHHH
Confidence 4433 3456677777766655554441111 000011 124455555555555444332222 2333445
Q ss_pred HHHHHhhCCCCHH--HHHHHHhhcCCCCCccc
Q 027291 176 QQWCSNNFPQAKE--ELEQMYKDVGIPEDFDY 205 (225)
Q Consensus 176 ~~~~~kk~~~~~~--~~~~l~~~fgIp~d~dy 205 (225)
...+..+||.... -++-+....||+..-.|
T Consensus 158 ~~~F~e~yg~~~~Vpllelld~~~glg~~~~~ 189 (500)
T PF04738_consen 158 KEAFIERYGEGQEVPLLELLDPESGLGYPAGY 189 (500)
T ss_pred HHHHHHHhCCCCceeHHHHHHHhcCCCCcccc
Confidence 5555668875331 12224445555544333
No 201
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=59.03 E-value=19 Score=31.13 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
+.+++.=+|--.||++|.+.....++.||=+. .|+..-||=-+|+.|++.|+|..+
T Consensus 2 ~~~v~sl~ral~IL~~l~~~~~~~~l~eia~~---lglpksT~~RlL~tL~~~G~l~~~ 57 (248)
T TIGR02431 2 RDFVASLARGLAVIEAFGAERPRLTLTDVAEA---TGLTRAAARRFLLTLVELGYVTSD 57 (248)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEeC
Confidence 34566667889999999998899999998554 588999999999999999999876
No 202
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=58.97 E-value=44 Score=24.00 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 87 KLESDLQSSKKRHTELVEQCNALKKG-REESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 87 ~l~~~i~~~~~~i~~l~~~ie~~k~~-r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
.|+.++..++.+...+..+++..... +.=..+|...+..+...-.++.+|+.+++.+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888777766442 12245788888888888888888888887766
No 203
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=58.94 E-value=87 Score=24.62 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 027291 126 LKAVELKHIELKD 138 (225)
Q Consensus 126 l~~L~~~~~~l~~ 138 (225)
+.+|+.++..+..
T Consensus 60 ~~eLqaki~ea~~ 72 (107)
T PF09304_consen 60 IAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 204
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.84 E-value=68 Score=24.72 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHH
Q 027291 126 LKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKE 188 (225)
Q Consensus 126 l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~ 188 (225)
+.+++.+++.++.+++. ++.+...+...+.+|.|+-..+....+..+|+-..
T Consensus 29 ~~~l~~q~~~~~~e~~~-----------l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~ 80 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAK-----------LKARNDQLFAEIDDLKGGQEAIEERARNELGMVKP 80 (105)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCC
Confidence 44555555555554433 34455566667777777777778888888887654
No 205
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=58.61 E-value=26 Score=30.60 Aligned_cols=54 Identities=19% Similarity=0.079 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
.+++.=+|--.||++|.+.. ..++.||=+. .|+..-||--+|+.|++.|+|..+
T Consensus 8 ~~v~sl~r~l~IL~~l~~~~-~l~l~eia~~---lgl~kstv~Rll~tL~~~G~l~~~ 61 (257)
T PRK15090 8 DSVSSVLKVFGILQALGEER-EIGITELSQR---VMMSKSTVYRFLQTMKTLGYVAQE 61 (257)
T ss_pred cccHHHHHHHHHHHHhhcCC-CCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEEc
Confidence 46777889999999998764 6899887544 589999999999999999999876
No 206
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=58.57 E-value=35 Score=23.37 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 98 RHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 98 ~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
++.+++..+.....+|. -+|...-.++.+|..++..|+.+|....
T Consensus 5 Rl~ELe~klkaerE~R~--~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 5 RLEELERKLKAEREARS--LDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHhHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666665552 3567777889999999999999997654
No 207
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=58.39 E-value=35 Score=26.45 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=34.8
Q ss_pred ccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 64 IGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 64 iGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
||++-|-..=..++..-+.++++.|.+.++.+...+..+...+...
T Consensus 74 iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 74 IGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666667777788888888888888888888887777654
No 208
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=58.29 E-value=2.3e+02 Score=29.28 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNA 157 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~ 157 (225)
...+.++++.|.++++...+.|.+|+..-..+++ ...+-..++..+...+..|+.+++.+...-.+..+....+
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKK------k~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~ke 662 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKK------KITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKE 662 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3446677777777777777777777777666665 3344455566666666666666666665444444444444
Q ss_pred HHHHHHHH
Q 027291 158 IEVAHAAA 165 (225)
Q Consensus 158 ~~~~k~aa 165 (225)
+..-...+
T Consensus 663 ie~K~~~e 670 (786)
T PF05483_consen 663 IESKSISE 670 (786)
T ss_pred HHHhhhhH
Confidence 44433333
No 209
>PRK11546 zraP zinc resistance protein; Provisional
Probab=58.06 E-value=62 Score=26.63 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=18.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 73 LPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 73 Fps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
.+.+...+.+.-.++...+...++.++-.-+.++..+..
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~ 82 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLT 82 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444444444444555555555555444444444443
No 210
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=57.75 E-value=13 Score=30.14 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc-------cccccc
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL-------KDKIGT 66 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~-------~EKiGs 66 (225)
||....| ++.=.+||+.++...-. +. -.+|...|+++.+|..=++.|.++|.|. -.+.|-
T Consensus 1 ~~~~~~l--D~~D~~Il~~Lq~d~R~-s~---~eiA~~lglS~~tV~~Ri~rL~~~GvI~~~~~~v~~~~lg~ 67 (153)
T PRK11179 1 MMENYQI--DNLDRGILEALMENART-PY---AELAKQFGVSPGTIHVRVEKMKQAGIITGTRVDVNPKQLGY 67 (153)
T ss_pred CCccccc--CHHHHHHHHHHHHcCCC-CH---HHHHHHHCcCHHHHHHHHHHHHHCCCeeeEEEEECHHHcCC
Confidence 6776554 56677899999887322 22 3455567999999999999999999885 257774
No 211
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=57.71 E-value=1.6e+02 Score=30.36 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
...++.++..|+.+.+....++.++++.++..
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555544
No 212
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.58 E-value=73 Score=23.33 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 027291 151 FEAMKNAIEVAHAAANRWTDNIFTLQQ 177 (225)
Q Consensus 151 i~~~k~~~~~~k~aanrwTDNI~~l~~ 177 (225)
.+.+..+...++..-+-|-+-|-+|..
T Consensus 48 reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 48 REALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555566666666667776666543
No 213
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=57.48 E-value=8 Score=26.54 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=27.7
Q ss_pred Ccc-chHHHHhhccCCCcchhcHHHHHHHhhhcCccccc-cccc
Q 027291 25 DFY-LLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD-KIGT 66 (225)
Q Consensus 25 ~~y-tlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E-KiGs 66 (225)
+.+ +..+|-+. -||+..+|.+.+..|.++|+|... +.|+
T Consensus 22 ~~lps~~~la~~---~~vsr~tvr~al~~L~~~g~i~~~~~~G~ 62 (64)
T PF00392_consen 22 DRLPSERELAER---YGVSRTTVREALRRLEAEGLIERRPGRGT 62 (64)
T ss_dssp SBE--HHHHHHH---HTS-HHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred CEeCCHHHHHHH---hccCCcHHHHHHHHHHHCCcEEEECCceE
Confidence 344 55555443 489999999999999999999765 4443
No 214
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=57.39 E-value=37 Score=26.44 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=35.7
Q ss_pred cccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 63 KIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 63 KiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
.+|++.|-..=..++.....++++.|++.++.++..+..++..++..
T Consensus 74 ~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~ 120 (129)
T cd00584 74 DLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTL 120 (129)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37887666666667778888888888888888888888877777654
No 215
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=57.01 E-value=2.4e+02 Score=30.47 Aligned_cols=59 Identities=17% Similarity=0.307 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC--C-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 027291 121 EALEELKAVELKHIELKDEMGQYADN--D-PAAFEAMKNAIEVAHAAANRWTDNIFTLQQWC 179 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~~~--D-p~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~ 179 (225)
.+..++..++.+...+...+..+..- + -..+..+......++....++...+..+..-+
T Consensus 860 ~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 921 (1163)
T COG1196 860 ELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL 921 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444322 1 13455555555566666666666555544443
No 216
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=56.98 E-value=92 Score=30.55 Aligned_cols=71 Identities=23% Similarity=0.311 Sum_probs=44.3
Q ss_pred cccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 63 KIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 63 KiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~ 142 (225)
+-| +.++|.=|. .. ......+.++..++..+..++..+..... +|...+.+|..-+..+..|...|+.
T Consensus 13 ~FG-~~~~~k~~~-~~----e~~~~~e~eL~~~qeel~~~k~~l~~~E~------~k~~~l~ELe~akr~veel~~kLe~ 80 (522)
T PF05701_consen 13 LFG-GSIDWKKHQ-SL----ERVKEKETELEKAQEELAKLKEQLEAAER------EKAQALSELESAKRTVEELKLKLEK 80 (522)
T ss_pred HcC-CccccccCC-ch----hhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 555888551 11 22333445555555555555555555533 6678888888888888888888876
Q ss_pred Hhh
Q 027291 143 YAD 145 (225)
Q Consensus 143 ~~~ 145 (225)
...
T Consensus 81 ~~~ 83 (522)
T PF05701_consen 81 AQA 83 (522)
T ss_pred HHH
Confidence 553
No 217
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.91 E-value=1.2e+02 Score=31.17 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 027291 125 ELKAVELKHIELKD 138 (225)
Q Consensus 125 ~l~~L~~~~~~l~~ 138 (225)
+++.+....+.|.+
T Consensus 601 R~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 601 RYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 218
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=56.26 E-value=61 Score=21.99 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAA 165 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aa 165 (225)
.++.+++.++++++-.|+-+...=.-.+|..|..+++.+...+.-.
T Consensus 8 ~EL~~~l~~lr~eLf~Lr~~~~~~~~~~~~~i~~~Rk~IARi~Tvl 53 (55)
T TIGR00012 8 EELAKKLDELKKELFELRFQKATGQLAKPHRIRQVRRDIARLLTVL 53 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHH
Confidence 4566677777777777775544444458999999999988877554
No 219
>PLN02943 aminoacyl-tRNA ligase
Probab=56.18 E-value=43 Score=35.41 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKK-GREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~-~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
.-......+|+++++.++++++.++.++....= .+-+.+-...-.+++.+++.+++.++..|+.+.+
T Consensus 885 iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 885 VDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335566777777777777777777777655432 2334455566666777888888888888887764
No 220
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=56.03 E-value=65 Score=28.54 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=35.6
Q ss_pred CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchh
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCA 77 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~ 77 (225)
.||--.-|=|||.+|.+-|+|..- -|.-.+|=+-|-..
T Consensus 40 sgvP~~kvY~vl~sLe~kG~v~~~-~g~P~~y~av~p~~ 77 (247)
T COG1378 40 SGVPRPKVYDVLRSLEKKGLVEVI-EGRPKKYRAVPPEE 77 (247)
T ss_pred cCCCchhHHHHHHHHHHCCCEEee-CCCCceEEeCCHHH
Confidence 788888999999999999999998 89999999999877
No 221
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=56.01 E-value=1.4e+02 Score=26.11 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=52.4
Q ss_pred hhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 027291 43 TQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEA 122 (225)
Q Consensus 43 ~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~l 122 (225)
+..+.+++..|-.-|.|....+.+-+ .-..+-.++..++.++.....|.+-++.+ .+.++.-++
T Consensus 104 ~~~~~~~l~~l~~~g~v~~~~~~~~D------------vT~~y~D~~arl~~l~~~~~rl~~ll~ka----~~~~d~l~i 167 (262)
T PF14257_consen 104 ADKFDSFLDELSELGKVTSRNISSED------------VTEQYVDLEARLKNLEAEEERLLELLEKA----KTVEDLLEI 167 (262)
T ss_pred HHHHHHHHHHHhccCceeeeeccccc------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHH
Confidence 45566666666655555544443322 22333445555555555555555544422 245667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 027291 123 LEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 123 l~~l~~L~~~~~~l~~el~~~~~ 145 (225)
-.+|.+.+.+++.++.++..|.+
T Consensus 168 e~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 168 ERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877764
No 222
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.86 E-value=2e+02 Score=29.72 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=13.5
Q ss_pred CCCCCHHHHHHH---HHHHHhhc
Q 027291 4 KRGLSLEEKRGK---ILEIFYES 23 (225)
Q Consensus 4 ~KglS~eEKr~r---il~~f~e~ 23 (225)
-.|+++.+-..- ++++|+..
T Consensus 412 g~GtD~~eg~ala~aiLe~l~~~ 434 (771)
T TIGR01069 412 GAGTDPDEGSALAISILEYLLKQ 434 (771)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhc
Confidence 357888887644 67777653
No 223
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=55.82 E-value=25 Score=30.99 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT 66 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs 66 (225)
|..+|.+.+|++++.+.+. -+.+||-+.. ||+.+||.--|..|-..|+|.--.=|.
T Consensus 1 m~~~eR~~~Il~~L~~~~~-v~v~eLa~~l---~VS~~TIRRDL~~Le~~g~l~r~~Gga 56 (256)
T PRK10434 1 MKPRQRQAAILEYLQKQGK-TSVEELAQYF---DTTGTTIRKDLVILEHAGTVIRTYGGV 56 (256)
T ss_pred CCHHHHHHHHHHHHHHcCC-EEHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEEECCE
Confidence 3568899999999999765 6888887665 899999988899999999987766554
No 224
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=55.64 E-value=21 Score=23.59 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=35.9
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
-.+|.++++.+. -++.||-+. -|+...+|--++..|++.|+|.....
T Consensus 6 ~~iL~~l~~~~~-~~~~~la~~---~~~~~~~~t~~i~~L~~~g~I~r~~~ 52 (59)
T PF01047_consen 6 FRILRILYENGG-ITQSELAEK---LGISRSTVTRIIKRLEKKGLIERERD 52 (59)
T ss_dssp HHHHHHHHHHSS-EEHHHHHHH---HTS-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcCC-CCHHHHHHH---HCCChhHHHHHHHHHHHCCCEEeccC
Confidence 467788887777 666765443 58899999999999999999987653
No 225
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=55.62 E-value=30 Score=23.54 Aligned_cols=40 Identities=25% Similarity=0.457 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhh
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVD 55 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVD 55 (225)
.+-+||+++.. ..-++++||.+. -|++.-+|+..+..|-+
T Consensus 6 rq~~Ll~~L~~-~~~~~~~ela~~---l~~S~rti~~~i~~L~~ 45 (59)
T PF08280_consen 6 RQLKLLELLLK-NKWITLKELAKK---LNISERTIKNDINELNE 45 (59)
T ss_dssp HHHHHHHHHHH-HTSBBHHHHHHH---CTS-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCcHHHHHHH---HCCCHHHHHHHHHHHHH
Confidence 46789999999 777799987655 48899999999988875
No 226
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=55.61 E-value=1.2e+02 Score=30.04 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 88 LESDLQSSKKRHTELVEQCNALKKGREESDE-REEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~e-R~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
....++.+..+|..+-..++.+...|...+. ...+-..+..++..+..|..++..++.+
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456666666777777777776665533222 3345555666666666666666666554
No 227
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=55.55 E-value=1.5e+02 Score=26.23 Aligned_cols=67 Identities=9% Similarity=0.153 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 027291 114 EESDEREEALEELKAVELKHIELKDEMGQYA-DNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCS 180 (225)
Q Consensus 114 ~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~-~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~ 180 (225)
.-...|.........++..+...+..+.++. .+.|+.+...+.++..+...+..-+-...-|-.-++
T Consensus 123 ~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik 190 (234)
T cd07665 123 GAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFERISATVR 190 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999995 456889999999998887777766655544444443
No 228
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=55.54 E-value=30 Score=30.26 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=44.4
Q ss_pred cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHH
Q 027291 27 YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLE 89 (225)
Q Consensus 27 ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~ 89 (225)
=|..||-+.. |++.++|--.|+.|.+.|+|.-...+ .+.+|+.-......++..+..+.
T Consensus 22 IS~~eLA~~L---~iS~~Tvsr~Lk~LEe~GlI~R~~~~-r~~~v~LTekG~~ll~~~~~d~~ 80 (217)
T PRK14165 22 ISSSEFANHT---GTSSKTAARILKQLEDEGYITRTIVP-RGQLITITEKGLDVLYNEYADYS 80 (217)
T ss_pred cCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEEcC-CceEEEECHHHHHHHHHHHHHHH
Confidence 3566776665 89999999999999999999888776 45777777776666555444443
No 229
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=55.52 E-value=2.2e+02 Score=28.25 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQ 176 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~ 176 (225)
.+|..+..++..+...+..|+.||..-+.+=-+.|.-|-+-+....+.+-.=+|-|..|+
T Consensus 455 ~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 455 KEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888899999999999999999887776556666676666666666666677776665
No 230
>PRK11546 zraP zinc resistance protein; Provisional
Probab=55.45 E-value=1.2e+02 Score=25.03 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHH
Q 027291 126 LKAVELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 126 l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~aan 166 (225)
...|+.++-..+.||..+... ||++|.++..++..++..+-
T Consensus 63 t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 63 TSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555443 88999999999998887654
No 231
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=55.33 E-value=99 Score=28.26 Aligned_cols=84 Identities=24% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcHHHHHHHHH
Q 027291 48 DVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR--EESDEREEALEE 125 (225)
Q Consensus 48 dvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r--~~~~eR~~ll~~ 125 (225)
+-.+.|+++|+|. .......+..+..++.++...+..+..++..++...... .....+.....+
T Consensus 182 ~~~~~L~~~g~is--------------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 247 (423)
T TIGR01843 182 EARRKLKEKGLVS--------------RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEE 247 (423)
T ss_pred HHHHHHHHcCCCC--------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027291 126 LKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 126 l~~L~~~~~~l~~el~~~~~ 145 (225)
+.+++.++..++.++..+..
T Consensus 248 l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 232
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=55.31 E-value=2.4e+02 Score=32.24 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=18.0
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 140 MGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 140 l~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
+.+|++.||..+.++..++..+++...
T Consensus 1298 ~~k~k~~d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1298 LEKYKDSDKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777776666654
No 233
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=55.31 E-value=92 Score=27.98 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=32.0
Q ss_pred Ecccc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027291 71 WSLPS--CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR 113 (225)
Q Consensus 71 WsFps--~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r 113 (225)
|-.|+ +....++.+++.+..+|+.++.++++-+.+++......
T Consensus 173 YP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~ 217 (259)
T PF08657_consen 173 YPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSS 217 (259)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 44444 44556777888888888888888888888888876644
No 234
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=55.17 E-value=42 Score=34.95 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKK-GREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~-~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
.-....+++|+++++.++.+++.++.++....= .+.+.+-...--+++.+++.++..++..|..+.
T Consensus 807 id~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 807 IDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335666777888888888888887777765432 234455566666677788888888888777664
No 235
>PRK11569 transcriptional repressor IclR; Provisional
Probab=55.15 E-value=32 Score=30.41 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
+++.=+|--.||++|.+.....++.||=+. .|+..-||--+|++|++.|+|..+
T Consensus 23 ~v~sl~ral~IL~~l~~~~~~~~lseia~~---lglpksTv~RlL~tL~~~G~l~~~ 76 (274)
T PRK11569 23 QVQSLTRGLKLLEWIAESNGSVALTELAQQ---AGLPNSTTHRLLTTMQQQGFVRQV 76 (274)
T ss_pred CccHHHHHHHHHHHHHhCCCCcCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEEc
Confidence 455667999999999998888999998554 588999999999999999999765
No 236
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=55.06 E-value=1.4e+02 Score=32.10 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhc----cCccchHHHHhhccC---CCcchh--cHHHHHHHhhhcCccccccc--------cceeeEEcc
Q 027291 11 EKRGKILEIFYES----QDFYLLKELEKLGPK---KGVITQ--SVKDVVQSLVDDDLVLKDKI--------GTSVYFWSL 73 (225)
Q Consensus 11 EKr~ril~~f~e~----~~~ytlKELEK~~pK---kGI~~~--~VKdvlQ~LVDDglV~~EKi--------GssN~YWsF 73 (225)
|+..+++..+.+- ..++.|.-.|+.-|+ ..|..- -.++.+.+++||--+.+|+| |-.--|-.=
T Consensus 75 ete~a~~~~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~id~~qe~se~i~e~~le~vGl~~~~~~s 154 (1195)
T KOG4643|consen 75 ETEMAQMRTIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSVIDDLQEASEKIAEKLLELVGLEKKYRES 154 (1195)
T ss_pred HHHHHHHHHHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeecc
Confidence 4666777666553 344555555555555 133322 23667777888766666655 776666655
Q ss_pred cchhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 027291 74 PSCAG------NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADND 147 (225)
Q Consensus 74 ps~~~------~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~D 147 (225)
|+... ...-..-..|.-+++.++.+|..|+..+++-- +.-..+-.+|..|+.++..|+-+...+-. +
T Consensus 155 ~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~------enll~lr~eLddleae~~klrqe~~e~l~-e 227 (1195)
T KOG4643|consen 155 RSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKF------ENLLRLRNELDDLEAEISKLRQEIEEFLD-E 227 (1195)
T ss_pred ccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 54321 22233344677788888888888887776532 23334455666666777776666665542 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 027291 148 PAAFEAMKNAIEVAHAAANRWT 169 (225)
Q Consensus 148 p~~i~~~k~~~~~~k~aanrwT 169 (225)
......-..++..+++.|.||.
T Consensus 228 a~ra~~yrdeldalre~aer~d 249 (1195)
T KOG4643|consen 228 AHRADRYRDELDALREQAERPD 249 (1195)
T ss_pred HHhhhhhhhHHHHHHHhhhcCC
Confidence 4556666778888888888886
No 237
>COG1438 ArgR Arginine repressor [Transcription]
Probab=55.04 E-value=32 Score=28.53 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhh----c-CccccccccceeeEEcccchhhhhHHH
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVD----D-DLVLKDKIGTSVYFWSLPSCAGNQLRN 83 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVD----D-glV~~EKiGssN~YWsFps~~~~~~~~ 83 (225)
.|..+..=+-.++.++|..||-..+.+.||. |-|+=|. + |+|.+- .+.+.||+|+|+........
T Consensus 6 ~R~~~Ik~iI~~~~i~TQ~Elv~~L~~~Gi~------vTQaTvSRDlkelglvKv~-~~~g~~~Y~l~~~~~~~~~~ 75 (150)
T COG1438 6 ERLELIKEIITEEKISTQEELVELLQEEGIE------VTQATVSRDLKELGLVKVR-NEKGTYVYSLPAELGVPPTS 75 (150)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCe------EehHHHHHHHHHcCCEEec-CCCCcEEEEeCCccCCCchh
Confidence 3444444445578899999999999998876 2233332 2 999987 89999999999876555333
No 238
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=54.92 E-value=81 Score=23.62 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=30.2
Q ss_pred ccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 26 FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 26 ~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
.|++.|+-++ .||++.++.-+ ...|+|...+ +.+=||.|.......
T Consensus 1 ~~~i~eva~~---~gVs~~tLR~y----e~~Gli~p~r--~~~g~R~Ys~~dv~~ 46 (98)
T cd01279 1 LYPISVAAEL---LGIHPQTLRVY----DRLGLVSPAR--TNGGGRRYSNNDLEL 46 (98)
T ss_pred CcCHHHHHHH---HCcCHHHHHHH----HHCCCCCCCc--CCCCCeeECHHHHHH
Confidence 3677776554 58888888876 5589998754 344456666555444
No 239
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.77 E-value=2.5e+02 Score=30.80 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH
Q 027291 150 AFEAMKNAIEVAHAAANRWTDNI 172 (225)
Q Consensus 150 ~i~~~k~~~~~~k~aanrwTDNI 172 (225)
.+++....+..+...+++-|=+|
T Consensus 908 kv~~~~~~~~~l~~~i~k~~~~i 930 (1293)
T KOG0996|consen 908 KVEKINEQLDKLEADIAKLTVAI 930 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 44444444445544444444433
No 240
>PRK11642 exoribonuclease R; Provisional
Probab=54.73 E-value=21 Score=37.09 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=40.4
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCC-cchhcHHHHHHHhhhcCcccccc
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKG-VITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkG-I~~~~VKdvlQ~LVDDglV~~EK 63 (225)
+..||++|.......+.++|++...-.+ -....+...|.+|+.+|.|...+
T Consensus 21 ~~~Il~~l~~~~~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~~ 72 (813)
T PRK11642 21 REFILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFTR 72 (813)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEcC
Confidence 4579999988778999999999875522 23567999999999999987543
No 241
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=54.55 E-value=74 Score=22.72 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYA-DNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~-~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.+|.+++.+|++++-.|+-+...=. -.+|..|...+.++...+..++
T Consensus 15 ~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ 62 (69)
T PRK14549 15 EEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQR 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777765554444 4578899999999888776554
No 242
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.47 E-value=2.5e+02 Score=30.74 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=42.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------C--------cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGRE-------E--------SDEREEALEELKAVELKHIELKDEMG 141 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~-------~--------~~eR~~ll~~l~~L~~~~~~l~~el~ 141 (225)
....++..++.+..+++.+...+.++...++....... + ..+-...+..+...-..+..+..++.
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666665555555555554432110 0 00111223334444455566666777
Q ss_pred HHhhCC-HHHHHHHHHHHHHH
Q 027291 142 QYADND-PAAFEAMKNAIEVA 161 (225)
Q Consensus 142 ~~~~~D-p~~i~~~k~~~~~~ 161 (225)
.|-..+ |..++.+..++..+
T Consensus 962 ~y~~~~~~~qL~~~e~el~~~ 982 (1311)
T TIGR00606 962 NKIQDGKDDYLKQKETELNTV 982 (1311)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 776665 55566665554433
No 243
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=54.39 E-value=2.5e+02 Score=28.51 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKK-------GR--EESDEREEALEELKAVELKHIELKDEMGQYADNDP 148 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~-------~r--~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp 148 (225)
...+...+.-+..+++..+.++..++.+++.... +. ...++=.++-..|.....++.+|..+++.....-.
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666666666555432 11 11223334444455567777777777777766655
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhcCCCCCc
Q 027291 149 AAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDVGIPEDF 203 (225)
Q Consensus 149 ~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~fgIp~d~ 203 (225)
+.++.-+.++..+-...+-.--=|.-+..-+... .+.+.|++++.|--.+
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-----sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKISELEELKEKLNSR-----SDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHHHh
Confidence 5555555555544444444433344444333322 3334455666544333
No 244
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=54.31 E-value=53 Score=33.14 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGRE---ESDEREEALEELKAVELKHIELKDEMGQYADN--DPAAFEAMKN 156 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~---~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~--Dp~~i~~~k~ 156 (225)
....++|+..|++++..+.+++..+..++.++. .+.++. ..+.+++.+.+|+.+|.+++-. |-+.. .
T Consensus 635 ~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k----~~Ek~~k~~~~l~eqi~kl~~q~~dkeen----K 706 (759)
T KOG0981|consen 635 EKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKK----EVEKKEKKLERLEEQLKKLEIQMTDKEEN----K 706 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc----cHHHHHHHHHHHHHHHHHHhhhccchhhc----c
Confidence 345667888888888888888888888877652 333333 5677777777777777776632 32211 1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHH
Q 027291 157 AIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEEL 190 (225)
Q Consensus 157 ~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~ 190 (225)
.+..-...+|-.---| -..||+ +|.++-+.|
T Consensus 707 ~vALGTSKiNYiDPRi--tvawcK-k~dVPiEKi 737 (759)
T KOG0981|consen 707 QVALGTSKLNYIDPRI--TVAWCK-KHDVPIEKI 737 (759)
T ss_pred eeecccccccccCCce--eeeehh-ccCCcHHHH
Confidence 1222233334322222 357865 778776554
No 245
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=54.20 E-value=2.1e+02 Score=27.68 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR---EESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r---~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
.+...+.-.+++++..+.+....+..+..-+... .+...=..++.-+..|+.++..++.+|..+..
T Consensus 239 ar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~ 307 (434)
T PRK15178 239 MQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMV 307 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555667777777777777777777666543 23344567888899999999999999998755
No 246
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=53.94 E-value=73 Score=22.21 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhhC-CHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 027291 118 EREEALEELKAVELKHIELKDEMGQ--YADN-DPAAFEAMKNAIEVAHAAANRWTDNIFTL 175 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~--~~~~-Dp~~i~~~k~~~~~~k~aanrwTDNI~~l 175 (225)
++..+-.++..++.++..+...|.. |-.. .|+.|+.-+.....+.....+....|..|
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666666666653 3333 45777777777777777777666665544
No 247
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=53.75 E-value=76 Score=22.36 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
...+..++.|..++..-.+-...++.-+.....+. ....+...-.++.+-...+..|+.+|.+|..
T Consensus 5 ~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~-~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 5 SKLQSRLERLEKELSIELKVKEGAENLLRLYSDEK-KKKLLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777776666666666555444443 2256788888899999999999999998874
No 248
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=53.71 E-value=78 Score=30.19 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELV 103 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~ 103 (225)
..+...+..++.+++.++..+..+.
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~ 361 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLK 361 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555555555555544433
No 249
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=53.59 E-value=93 Score=30.19 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=23.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 75 SCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 75 s~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
+.....++.++..++.+++.++.++..++..+.-..
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777666665443
No 250
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=53.58 E-value=87 Score=23.56 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--H----HHHHHHHHHHHHHHHHHHhhhhhHH
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADND--P----AAFEAMKNAIEVAHAAANRWTDNIF 173 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~D--p----~~i~~~k~~~~~~k~aanrwTDNI~ 173 (225)
.+|..+..+++.|+.+...+.+++....... . ..+..++.++..+...+..+.+.+.
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999888753 1 2333344444444444444444433
No 251
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=53.39 E-value=1.1e+02 Score=23.90 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
+-..+..+++++..+-..+.+|+..+ ..++++-..|+-++..|+.-|.....
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~-------------~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQL-------------QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455556666666666666555554 56677777888888888888777754
No 252
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=53.28 E-value=1.4e+02 Score=27.09 Aligned_cols=28 Identities=29% Similarity=0.518 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHhhcCCCCCccccccCCC
Q 027291 184 PQAKEELEQMYKDVGIPEDFDYLELSPV 211 (225)
Q Consensus 184 ~~~~~~~~~l~~~fgIp~d~dy~e~~~~ 211 (225)
...+-.++.+-...|.|.+.+|-.-..+
T Consensus 72 ~wGE~~Le~iLe~~gl~~~~~y~~Q~~~ 99 (304)
T PF02646_consen 72 NWGEMQLERILEDSGLPEGCDYETQVSL 99 (304)
T ss_pred hHHHHHHHHHHHHcCCCcccchhhcccc
Confidence 3344556667777788887777654444
No 253
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=53.27 E-value=37 Score=28.51 Aligned_cols=54 Identities=7% Similarity=0.142 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
+|++.--.| .|+.++.+-..=|+.|||-+ +-||+..||+-++..|+.-|++..+
T Consensus 157 ~~~~~Lt~r-~Vl~~~~~g~~g~s~~eIa~---~l~iS~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 157 TGIDPLTLN-AVRKLFKEPGVQHTAETVAQ---ALTISRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred CCCCHHHHH-HHHHHHHcCCCCcCHHHHHH---HhCccHHHHHHHHHHHHhCCeEEEE
Confidence 344433334 78888876555577777644 4599999999999999999999888
No 254
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=53.23 E-value=1.5e+02 Score=25.56 Aligned_cols=30 Identities=23% Similarity=0.159 Sum_probs=25.6
Q ss_pred CCcchhcHHHHHHHhhhcCccccc-ccccee
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKD-KIGTSV 68 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~E-KiGssN 68 (225)
-||+-.+|.|.|+.|..+|||... .-|+..
T Consensus 43 ~gVSRtpVREAL~~L~~eGlV~~~~~~G~~V 73 (257)
T PRK10225 43 LDVTRTVVREALIMLEIKGLVEVRRGAGIYV 73 (257)
T ss_pred hCCCHHHHHHHHHHHHHCCCEEEecCCEEEE
Confidence 699999999999999999999876 455544
No 255
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=53.21 E-value=40 Score=25.64 Aligned_cols=52 Identities=29% Similarity=0.298 Sum_probs=38.7
Q ss_pred CccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 57 DLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 57 glV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
+.|-+. +|++-|-+.=+.++..-...++..+++.++.+...+..++..+...
T Consensus 59 ~~vlV~-lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~ 110 (120)
T PF02996_consen 59 DKVLVS-LGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQL 110 (120)
T ss_dssp TEEEEE-EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CEEEEE-eeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 7887777777778888888888888888888888888877776544
No 256
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=53.17 E-value=8.7 Score=25.50 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=26.3
Q ss_pred cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 27 YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 27 ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
.+..+|-.. -||+..+|-..|..|.+.|+|...
T Consensus 26 ~~~~~la~~---~~is~~~v~~~l~~L~~~G~i~~~ 58 (66)
T cd07377 26 PSERELAEE---LGVSRTTVREALRELEAEGLVERR 58 (66)
T ss_pred CCHHHHHHH---HCCCHHHHHHHHHHHHHCCCEEec
Confidence 446665444 599999999999999999998654
No 257
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=53.17 E-value=9.3 Score=32.67 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=25.9
Q ss_pred CCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
=||+-+||..-|+.|+++|+|...+ |.+.|-
T Consensus 34 ~gVSR~TVR~Al~~L~~eGli~r~~-G~GTfV 64 (233)
T TIGR02404 34 YGASRETVRKALNLLTEAGYIQKIQ-GKGSIV 64 (233)
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEeC-CceEEE
Confidence 5999999999999999999998865 444443
No 258
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.00 E-value=2.7e+02 Score=29.93 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=75.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Q 027291 74 PSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR---EES-DEREEALEELKAVELKHIELKDEMGQYA----- 144 (225)
Q Consensus 74 ps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r---~~~-~eR~~ll~~l~~L~~~~~~l~~el~~~~----- 144 (225)
+|.....++.++..|+++++.++.+..+=..++-+...-+ +.. +=|..+++....|++++..-+.+.....
T Consensus 222 askte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~ 301 (1243)
T KOG0971|consen 222 ASKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKER 301 (1243)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666888888999999998888877776666554432 222 3377888877777777766555443322
Q ss_pred ---------hC------C----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhC
Q 027291 145 ---------DN------D----PAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNF 183 (225)
Q Consensus 145 ---------~~------D----p~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~ 183 (225)
++ | -++.+.+..++.-+++.+.-.+-.+.+|++-.-++-
T Consensus 302 ~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG 359 (1243)
T KOG0971|consen 302 YKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKG 359 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 2 245556677788888888888888888888888773
No 259
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.63 E-value=1.8e+02 Score=26.71 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027291 119 REEALEELKAVELKHIELKDEMG 141 (225)
Q Consensus 119 R~~ll~~l~~L~~~~~~l~~el~ 141 (225)
|..+-..+.+|-.....+.....
T Consensus 78 R~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 78 RDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444333
No 260
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=52.56 E-value=1.1e+02 Score=28.93 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHH
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMY 194 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~ 194 (225)
+.|++.++++++|+.+.+-+-+=+ . +|+.++.++..-.. -....++...+|+.++-++.+.
T Consensus 73 ekr~~Vla~lkeLe~ev~piv~~l---e--~Pd~~~~~~~~k~~------------~~~l~~L~e~ynf~~e~i~~ly 133 (432)
T KOG2758|consen 73 EKRTEVLAELKELEEEVAPIVKVL---E--NPDLIAALRSDKDR------------VQNLQHLQEHYNFTPERIETLY 133 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---c--CHHHHHHHHhhhhH------------HHHHHHHHHhcCCCHHHHHHHH
Confidence 357788888888888877764433 2 78888877654432 1334556666666666555444
No 261
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=52.39 E-value=16 Score=28.51 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhc-cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 12 KRGKILEIFYES-QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 12 Kr~ril~~f~e~-~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
---++|.++... ....+..|| +..-||+...|..+|+.|+..|+|...+
T Consensus 10 yal~~l~~la~~~~~~~s~~ei---a~~l~is~~~v~~~l~~L~~~Gli~~~~ 59 (130)
T TIGR02944 10 YATLVLTTLAQNDSQPYSAAEI---AEQTGLNAPTVSKILKQLSLAGIVTSKR 59 (130)
T ss_pred HHHHHHHHHHhCCCCCccHHHH---HHHHCcCHHHHHHHHHHHHHCCcEEecC
Confidence 345677777654 457788877 5557999999999999999999998754
No 262
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=52.30 E-value=1.2e+02 Score=24.06 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
+..+.++...++..+..++...+.++.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544443
No 263
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=52.24 E-value=17 Score=30.64 Aligned_cols=50 Identities=26% Similarity=0.195 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL 60 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~ 60 (225)
|+.++.+..|+++++..+.. +++||-. .-||+.+||.==|+.|..+|+|.
T Consensus 3 m~~~~R~~~Il~~l~~~~~~-~~~~La~---~~~vS~~TiRRDl~~L~~~g~~~ 52 (185)
T PRK04424 3 LSKKERQKALQELIEENPFI-TDEELAE---KFGVSIQTIRLDRMELGIPELRE 52 (185)
T ss_pred CCHHHHHHHHHHHHHHCCCE-EHHHHHH---HHCcCHHHHHHHHHHHhcchHHH
Confidence 56788999999999997765 6666544 35899999999999999999875
No 264
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=52.22 E-value=92 Score=22.84 Aligned_cols=66 Identities=18% Similarity=0.295 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
...+...+..|+.++..++...++|.+.+......- +...|..+..+++.|-+.++..-.++.++.
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~-~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSL-GRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777888888888888888877777665532 345788999999888888887777776654
No 265
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=52.13 E-value=9.4 Score=30.99 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=21.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHhhcCCCCCcccc
Q 027291 174 TLQQWCSNNFPQAKEELEQMYKDVGIPEDFDYL 206 (225)
Q Consensus 174 ~l~~~~~kk~~~~~~~~~~l~~~fgIp~d~dy~ 206 (225)
+|+.||...+|+++++ .|..||+|.|+--+
T Consensus 84 ~LkrHL~~~~gltp~e---YR~kwGlp~dyplv 113 (132)
T PF05443_consen 84 TLKRHLRTHHGLTPEE---YRAKWGLPKDYPLV 113 (132)
T ss_dssp BHHHHHHHTT-S-HHH---HHHHTT-GGG--SB
T ss_pred hHHHHHHHccCCCHHH---HHHHhCcCCCCccc
Confidence 4689999999999998 67899999986444
No 266
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=51.96 E-value=1.3e+02 Score=31.18 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhC------CHHHHHHHHHHHHHH
Q 027291 131 LKHIELKDEMGQYADN------DPAAFEAMKNAIEVA 161 (225)
Q Consensus 131 ~~~~~l~~el~~~~~~------Dp~~i~~~k~~~~~~ 161 (225)
+.++.|.+|...++.. .|..+.+|+.++..+
T Consensus 190 kkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~ 226 (769)
T PF05911_consen 190 KKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESL 226 (769)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence 5556666666655543 799999999998887
No 267
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=51.94 E-value=31 Score=24.07 Aligned_cols=26 Identities=27% Similarity=0.495 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 118 EREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
+|.+++.+...|++++.+|+.-|.+|
T Consensus 34 ~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 34 DRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999888776
No 268
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.94 E-value=8.3 Score=28.65 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.0
Q ss_pred cHHHHHHHhhhcCccccccccc
Q 027291 45 SVKDVVQSLVDDDLVLKDKIGT 66 (225)
Q Consensus 45 ~VKdvlQ~LVDDglV~~EKiGs 66 (225)
-..||||.+-||-++.++.||.
T Consensus 20 ~~~dvvq~~~ddplt~ce~c~a 41 (82)
T COG2331 20 NRFDVVQAMTDDPLTTCEECGA 41 (82)
T ss_pred hHHHHHHhcccCccccChhhCh
Confidence 3689999999999999999985
No 269
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=51.93 E-value=1.2e+02 Score=24.97 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 83 NVYRKLESDLQSSKKRHTELVEQCNALKKG--REESDEREEALEELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 83 ~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~--r~~~~eR~~ll~~l~~L~~~~~~l~~el~~ 142 (225)
.-+++|+++++.++.+..++-..|..+... +.+..+=...-+++..++.++..|+..|..
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888877777777777777663 333333333334466666777777666653
No 270
>PRK09039 hypothetical protein; Validated
Probab=51.93 E-value=2e+02 Score=26.67 Aligned_cols=13 Identities=15% Similarity=0.468 Sum_probs=7.3
Q ss_pred CCCCccc---cccCCC
Q 027291 199 IPEDFDY---LELSPV 211 (225)
Q Consensus 199 Ip~d~dy---~e~~~~ 211 (225)
||.+.++ |+|+-.
T Consensus 257 ~p~~i~~~I~I~GHTD 272 (343)
T PRK09039 257 IPPEINWVLRVDGHTD 272 (343)
T ss_pred cCCcCCeeEEEEEecC
Confidence 6766653 456533
No 271
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=51.86 E-value=1.6e+02 Score=25.37 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHH-HHHHHH----HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNALKKGR-EESDE-REEALE----ELKAVELKHIELKDEMGQYADNDPAAFEAMKNA 157 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~k~~r-~~~~e-R~~ll~----~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~ 157 (225)
+.+++++++++++.+..-.++|...+.|+ .-+.+ ....-. .+++-++...-.+.=+.++.++-|.....+.++
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk~ksel~ee 196 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGLPKKKSELYEE 196 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 45678888888888888888888888886 23322 222221 233344444445555667777767655554443
No 272
>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.84 E-value=18 Score=34.57 Aligned_cols=60 Identities=25% Similarity=0.271 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEE
Q 027291 8 SLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFW 71 (225)
Q Consensus 8 S~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YW 71 (225)
+.+||...+++.-..+.+- -.++.|.+-||+.-.-||.|++-+++|+|+-|+-=.+-+||
T Consensus 364 ~~~e~l~~~l~~V~~~etl----~a~e~A~~l~is~~lakErLl~AE~~G~lcRD~s~eGL~fY 423 (432)
T KOG2760|consen 364 SDEEKLVDALEDVSKSETL----TASELAKKLGISLGLAKERLLNAEDEGLLCRDDSVEGLRFY 423 (432)
T ss_pred chHHHHHHHHHhccCcchh----hHHHHHHHhCchHHHHHHHHHHHHhcCCeeeccCccceeec
Confidence 6678888888777766655 56778888999999999999999999999999988888888
No 273
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=51.60 E-value=33 Score=23.95 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=18.5
Q ss_pred CCcchhcHHHHHHHhhhcCccccc
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
..++...++.+|+.||.||.+.+.
T Consensus 31 ~~~s~~eL~~fL~~lv~e~~L~~~ 54 (60)
T PF08672_consen 31 YDISLEELQEFLDRLVEEGKLECS 54 (60)
T ss_dssp TT--HHHHHHHHHHHHHTTSEE--
T ss_pred CCCCHHHHHHHHHHHHHCCcEEec
Confidence 467899999999999999999887
No 274
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=51.41 E-value=77 Score=21.70 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.++.+++.+++.++-.|+-+...=.-.+|..|...++.+..++.-.+
T Consensus 10 ~eL~~~l~elk~eL~~Lr~q~~~~~l~n~~~ir~~Rr~IARi~Tvl~ 56 (58)
T PF00831_consen 10 EELQEKLEELKKELFNLRFQKATGQLENPHRIREIRRDIARILTVLR 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 45666777777777777777666333489999999999988776543
No 275
>PHA02104 hypothetical protein
Probab=51.41 E-value=8.1 Score=28.43 Aligned_cols=10 Identities=40% Similarity=1.102 Sum_probs=8.2
Q ss_pred eeeEEcccch
Q 027291 67 SVYFWSLPSC 76 (225)
Q Consensus 67 sN~YWsFps~ 76 (225)
+.+||.||.-
T Consensus 34 ~ti~w~fp~i 43 (89)
T PHA02104 34 STIFWTFPGI 43 (89)
T ss_pred eEEEEecCCc
Confidence 5689999973
No 276
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=51.24 E-value=1.5e+02 Score=28.03 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=43.6
Q ss_pred eeEEcccchhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 68 VYFWSLPSCAGNQ--LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 68 N~YWsFps~~~~~--~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
--||.-|..+... ....+..+-..+..+.....++....+-... .|.+-+..+..++..|..++..+..+|..+
T Consensus 26 p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~--~D~e~~~~a~~e~~~l~~~~~~~e~~l~~~ 101 (360)
T TIGR00019 26 PEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE--SDPEMREMAKEELEELEEKIEELEEQLKVL 101 (360)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489888765543 2233333333333344444444444433322 455667777788888998888888876663
No 277
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=51.10 E-value=65 Score=23.68 Aligned_cols=49 Identities=8% Similarity=0.239 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhh
Q 027291 121 EALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTD 170 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTD 170 (225)
+|.+++..|++-+.-+..=...+...- ..++...+.+..+-.-+|.||+
T Consensus 2 aL~kEL~~Lr~IN~~ie~~~~~L~~a~-~~~~~v~~~~~~t~~LLd~w~~ 50 (78)
T PF08651_consen 2 ALEKELEQLRKINPVIEGLIETLRSAK-SNMNRVQETVESTNTLLDKWIR 50 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777766666666666666554 5677777788888888888886
No 278
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.91 E-value=1.2e+02 Score=31.95 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNALKKGRE-ESDEREEALEELKAVELKHIELKDEMG 141 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~-~~~eR~~ll~~l~~L~~~~~~l~~el~ 141 (225)
+++..++.|+.++..+..++.+.+..|...+..-+ -+..|.-.+.++.+|+.++++++..|.
T Consensus 441 ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555444444333332211 122344445555555555555544443
No 279
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.66 E-value=2.2e+02 Score=26.86 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027291 118 EREEALEELKAVELKHIELKD 138 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~ 138 (225)
.++.|-+++..|++.+.-|..
T Consensus 254 ~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 254 MKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHhhhHHHHH
Confidence 344555555555555544444
No 280
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=50.56 E-value=86 Score=22.00 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.++.+++.+|++++-.|+-+...=.-.+|..|...+..+...+...+
T Consensus 12 ~eL~~~l~~lkkeL~~lR~~~~~~~~~n~~~i~~~rk~IARi~Tvl~ 58 (66)
T PRK00306 12 EELNEKLLELKKELFNLRFQKATGQLENTHRLREVRRDIARIKTVLR 58 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777755443334478999999988888776554
No 281
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=50.56 E-value=1.8e+02 Score=26.92 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=16.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 75 SCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 75 s~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
++....+...+...+++|..+..++.+++.++...
T Consensus 219 seELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 219 SEELARKTEENRRQQEEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555444443
No 282
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=50.36 E-value=31 Score=23.20 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=31.5
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
-.||.+++.....-++++|-. .-|+...+|-.+|+.|++.|+|...
T Consensus 6 ~~vL~~l~~~~~~~t~~~l~~---~~~~~~~~vs~~i~~L~~~glv~~~ 51 (68)
T PF13463_consen 6 WQVLRALAHSDGPMTQSDLAE---RLGISKSTVSRIIKKLEEKGLVEKE 51 (68)
T ss_dssp HHHHHHHT--TS-BEHHHHHH---HTT--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHccCCCcCHHHHHH---HHCcCHHHHHHHHHHHHHCCCEEec
Confidence 457777775666666666544 3588999999999999999999544
No 283
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=50.35 E-value=2.1e+02 Score=32.66 Aligned_cols=89 Identities=16% Similarity=0.273 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----------------------------cHHHHHHHHHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGREE----------------------------SDEREEALEELKAVELKH 133 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~----------------------------~~eR~~ll~~l~~L~~~~ 133 (225)
+.....|..+++.+...+.+|+..+....+.-.. -+++...+.++.+|..++
T Consensus 1173 k~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i 1252 (1822)
T KOG4674|consen 1173 KRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKI 1252 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666666666666555442100 135667777788888888
Q ss_pred HHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHHhhhh
Q 027291 134 IELKDEMGQYADN---DPAAFEAMKNAIEVAHAAANRWTD 170 (225)
Q Consensus 134 ~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~aanrwTD 170 (225)
..++.++.-|... -...+.....++..++..+.||-=
T Consensus 1253 ~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~ 1292 (1822)
T KOG4674|consen 1253 EKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQ 1292 (1822)
T ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777754 246788888888889999888863
No 284
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.19 E-value=1.6e+02 Score=25.15 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 84 VYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
.+..|.+++++++.+....+..+..... +-..+.+-|..++.++..|+.+|..|.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~------eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQ------ENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444444433322 223444445555555555555555554
No 285
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=50.18 E-value=1.2e+02 Score=23.74 Aligned_cols=53 Identities=25% Similarity=0.311 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
.+-.++..+++++..+-..+.+|+..+ ..++++-..|+-++..|+..|..+..
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~-------------~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQL-------------AELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555566666666666666665554 56677778888888888888877643
No 286
>PRK09954 putative kinase; Provisional
Probab=50.18 E-value=22 Score=32.37 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL 60 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~ 60 (225)
+++..+||+++++.. +-+..||-+.+ ||+..+|...|..|+.+|.|.
T Consensus 2 ~~~~~~il~~l~~~~-~~s~~~la~~l---~~s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 2 NNREKEILAILRRNP-LIQQNEIADIL---QISRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred ChHHHHHHHHHHHCC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCcC
Confidence 456778999999887 67888876655 699999999999999999884
No 287
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.13 E-value=88 Score=30.62 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=21.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 74 PSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 74 ps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
|.+..+.+-.++..+..+++.+...-+.|.++.+.++.
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556666666666555555555555544
No 288
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=49.79 E-value=41 Score=24.56 Aligned_cols=57 Identities=26% Similarity=0.393 Sum_probs=42.9
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc--cccceee-EEcccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD--KIGTSVY-FWSLPS 75 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E--KiGssN~-YWsFps 75 (225)
++||..+... +.||.||+. ++||.-.++.=+|-.|.+.|+|.-. ++|-..| -||.++
T Consensus 8 ~~IL~~ls~~--c~TLeeL~e---kTgi~k~~LlV~LsrL~k~GiI~Rkw~~~~gkk~R~YclK~ 67 (72)
T PF05584_consen 8 QKILIILSKR--CCTLEELEE---KTGISKNTLLVYLSRLAKRGIIERKWRKFGGKKYREYCLKY 67 (72)
T ss_pred HHHHHHHHhc--cCCHHHHHH---HHCCCHHHHHHHHHHHHHCCCeeeeeEEecCeEEEEEEecc
Confidence 4555555555 999999885 5899999999999999999999887 6663322 266554
No 289
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.73 E-value=3e+02 Score=28.04 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhCCHHHHHHHHHHHHH
Q 027291 88 LESDLQSSKKRHTELVEQCNALKKGR---EESDEREEALEELKAVELKHIELKDEMGQ----YADNDPAAFEAMKNAIEV 160 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~~k~~r---~~~~eR~~ll~~l~~L~~~~~~l~~el~~----~~~~Dp~~i~~~k~~~~~ 160 (225)
|++++..++.+....+.+++.-+... ..+.+-...+.++.+|+.++..++.++.. |....|.. ..++.+...
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v-~~l~~~~~~ 350 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTY-RALLEKRQT 350 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchH-HHHHHHHHH
Confidence 55667777777777777777666533 22334456777788888888777755544 55556743 344444444
Q ss_pred HHHHHH
Q 027291 161 AHAAAN 166 (225)
Q Consensus 161 ~k~aan 166 (225)
+...+.
T Consensus 351 L~~~~~ 356 (726)
T PRK09841 351 LEQERK 356 (726)
T ss_pred HHHHHH
Confidence 433333
No 290
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=49.61 E-value=2.4e+02 Score=27.65 Aligned_cols=103 Identities=16% Similarity=0.270 Sum_probs=56.5
Q ss_pred ccceeeEEcccchhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcC-C-----------------------CCc
Q 027291 64 IGTSVYFWSLPSCAGNQLRNVYRKLESDLQSS---KKRHTELVEQCNALKKG-R-----------------------EES 116 (225)
Q Consensus 64 iGssN~YWsFps~~~~~~~~~~~~l~~~i~~~---~~~i~~l~~~ie~~k~~-r-----------------------~~~ 116 (225)
||++-++.+ ....+..+..++++.+.++.+ ++...++++.++.++.. | +..
T Consensus 225 i~v~gcw~a--y~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~ 302 (575)
T KOG4403|consen 225 IGVGGCWFA--YRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGV 302 (575)
T ss_pred HHhhhhhhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcch
Confidence 455554433 334444455566666655544 34566666666666543 1 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHH-------------------HHHHHHHHHHHHhhh
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADN-DPAAFEAM-------------------KNAIEVAHAAANRWT 169 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~-Dp~~i~~~-------------------k~~~~~~k~aanrwT 169 (225)
+. ....++++.|+.++.+-+.+|+.-+.- -|.+++.. .+++..|+++|.+.-
T Consensus 303 e~-e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklk 374 (575)
T KOG4403|consen 303 EN-ETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLK 374 (575)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11 122257777777777777777765422 45555432 245677788777654
No 291
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=49.33 E-value=1.7e+02 Score=25.03 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=50.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 027291 113 REESDEREEALEELKAVELKHIELKDEMGQYADND---PAAFEAMKNAIEVAHAAANRWTDNIFTLQQW 178 (225)
Q Consensus 113 r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~D---p~~i~~~k~~~~~~k~aanrwTDNI~~l~~~ 178 (225)
|.--..|..++..++.+...+..++.++.++...+ |+++..++.++..+-.++..-......|-.=
T Consensus 104 k~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~ 172 (216)
T cd07627 104 RAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSEL 172 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446899999999999999999999999997643 7889888888887777666555444444333
No 292
>PRK11020 hypothetical protein; Provisional
Probab=49.21 E-value=1.2e+02 Score=24.14 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 027291 88 LESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKD 138 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~ 138 (225)
++.+|..+..++..++.++..+. .|.|.+-=.+...++..|.+++.+|+.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~-~rgd~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAAS-LRGDAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655543 355555444555555555555555543
No 293
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=48.97 E-value=1.1e+02 Score=22.84 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=24.6
Q ss_pred cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 27 YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 27 ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
|+++|+-++ .||++.++.-+. ..|++...+-+.+|+.
T Consensus 1 ~ti~eva~~---~gvs~~tlR~ye----~~Gll~~~~~~~~g~R 37 (103)
T cd01106 1 YTVGEVAKL---TGVSVRTLHYYD----EIGLLKPSRRTENGYR 37 (103)
T ss_pred CCHHHHHHH---HCcCHHHHHHHH----HCCCCCCCccCCCCce
Confidence 566666554 599999988664 4799876555444543
No 294
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=48.87 E-value=1e+02 Score=22.42 Aligned_cols=60 Identities=23% Similarity=0.182 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
....++.|.++.=.++-+|--|++.+.... .+.-..++.+--+|+.++..|+.++..+..
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~-----~~~~~~~~keNieLKve~~~L~~el~~~~~ 64 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLG-----PESIEELLKENIELKVEVESLKRELQEKKK 64 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888776321 233456777777788888888888877764
No 295
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=48.77 E-value=58 Score=24.14 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 027291 119 REEALEELKAVELKHIELKDEMGQYADNDPAAFEAM 154 (225)
Q Consensus 119 R~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~ 154 (225)
-..+..+...|+.+...|+-|...++ +|.+|++.
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~--~~~rIe~i 77 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLS--SPSRIERI 77 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--CHHHHHHH
Confidence 44555666667777777777777766 67776653
No 296
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=48.41 E-value=2.1e+02 Score=25.85 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
...+..|+.+++.++.+|..+++.+..+.
T Consensus 80 e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 80 ESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666665555543
No 297
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=48.37 E-value=1.1e+02 Score=26.72 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 027291 147 DPAAFEAMKNAIEVAHAAA 165 (225)
Q Consensus 147 Dp~~i~~~k~~~~~~k~aa 165 (225)
+-++|+.+...+..++..+
T Consensus 90 ~eeri~~lE~~l~ea~~~~ 108 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRA 108 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666655555555443
No 298
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.32 E-value=1.3e+02 Score=29.18 Aligned_cols=54 Identities=28% Similarity=0.341 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 027291 83 NVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKD 138 (225)
Q Consensus 83 ~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~ 138 (225)
.+..++..+++.++.+...+...|........+ ....++++.+.|..+++.+..
T Consensus 36 ~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~--~~~~l~~e~~~l~~~l~~~e~ 89 (429)
T COG0172 36 EERRKLLRELEELQAERNELSKEIGRALKRGED--DAEELIAEVKELKEKLKELEA 89 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHHHHHHHHHhccH
Confidence 333445555555555555555555432221111 344444444444444444433
No 299
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=48.27 E-value=99 Score=27.47 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.....|.+.+|++++.+.+. -+.+||-+.. ||+.+||.==|..|-+.|++.--.
T Consensus 12 ~~~~~eR~~~Il~~L~~~~~-vtv~eLa~~l---~VS~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 12 VTGTSERREQIIQRLRQQGS-VQVNDLSALY---GVSTVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred hccHHHHHHHHHHHHHHcCC-EeHHHHHHHH---CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 35667888999999999876 7999998887 999999998899999999998444
No 300
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=48.16 E-value=11 Score=34.80 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=27.0
Q ss_pred cchhcHHHHHHHhhhcCccccccccceeeEEcccch
Q 027291 41 VITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSC 76 (225)
Q Consensus 41 I~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~ 76 (225)
..--.+.+++..||++|+|..||.-+-|+=+.+|+.
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~ 233 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSP 233 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---H
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCH
Confidence 345689999999999999999999999999999985
No 301
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=48.11 E-value=1.4e+02 Score=23.93 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=18.1
Q ss_pred EcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 71 WSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 71 WsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
|+||.--...+++ |...++.+-+.+..+.+.|..+
T Consensus 28 ws~sD~M~vTrr~----m~~A~~~v~kql~~vs~~l~~t 62 (126)
T PF07889_consen 28 WSFSDLMFVTRRS----MSDAVASVSKQLEQVSESLSST 62 (126)
T ss_pred CchhHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 7898876655544 3333444444444444444333
No 302
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.09 E-value=3.9e+02 Score=28.95 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=17.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCN 107 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie 107 (225)
++...+..+++.|++++.....+.++-....+
T Consensus 780 d~~~~re~rlkdl~keik~~k~~~e~~~~~~e 811 (1174)
T KOG0933|consen 780 DAKANRERRLKDLEKEIKTAKQRAEESSKELE 811 (1174)
T ss_pred HhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666555555444433
No 303
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=47.97 E-value=66 Score=34.05 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALK-KGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k-~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
......+++|+++++.++++++.++.++.... ..+-+.+-.+.--+++.+++.+++.++..|+.+.
T Consensus 925 id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 925 IDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777775432 1233334444445556667777777777666654
No 304
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=47.94 E-value=77 Score=24.08 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=50.0
Q ss_pred cCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 027291 37 PKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREES 116 (225)
Q Consensus 37 pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~ 116 (225)
-.+||.+. .|..||+-|+|.-+-.|. ==|.|++......+... +|.. .++--- +.-
T Consensus 15 ~~~gi~~~----~l~eLve~GlIep~~~~~--~~~~F~~~~l~r~~~a~-rL~~--------------dl~in~---~gi 70 (101)
T PRK10265 15 LHTGVSEE----ELNEIVGLGVIEPREIQE--TTWVFDDHAAIVVQRAV-RLRH--------------ELALDW---PGI 70 (101)
T ss_pred HHHCcCHH----HHHHHHHCCCeecCCCCc--ccceECHHHHHHHHHHH-HHHH--------------HcCCCH---HHH
Confidence 33477664 556788889999865553 45778886544432211 2211 110000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
.==-.||.+++.|+.++..|+..|..|.+
T Consensus 71 alvl~LLd~i~~Lr~el~~L~~~l~~~~~ 99 (101)
T PRK10265 71 AVALTLLDEIAHLKQENRLLRQRLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11247888899999999999998887764
No 305
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=47.90 E-value=2.3e+02 Score=26.13 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 83 NVYRKLESDLQSSKKRHTELVEQCNALKKG-REESDEREEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 83 ~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~-r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
.++.+-+..+.+-..+|.+|+.++..++.. -++.=-|.+.---|++.++++++|+.-++....+
T Consensus 75 akLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 75 AKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333334444444455555555444332 1222236544444888899999888877766654
No 306
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=47.87 E-value=87 Score=21.30 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.++.+++.++.+++-.|+.+...=+-.+|..+..++..+...+...+
T Consensus 9 ~eL~~~l~~l~~elf~Lr~q~~~~~~~~~~~~~~~Rr~IARi~Til~ 55 (57)
T cd00427 9 EELQEKLDELKKELFNLRFQKATGQLENPHRIRKVRKDIARIKTVLN 55 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666654444334489999999999888776543
No 307
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=47.84 E-value=3.4e+02 Score=28.11 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREES-----DEREEALEELKAVEL-------KHIELKDEMGQYAD 145 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~-----~eR~~ll~~l~~L~~-------~~~~l~~el~~~~~ 145 (225)
...+++++.....++..++.++..|+.++......-.+. .+-..+-.++..+.+ ++..|+++|.....
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777766665521111 112333344444444 55566666655553
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHH
Q 027291 146 NDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEEL 190 (225)
Q Consensus 146 ~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~ 190 (225)
. ..+-...+..+.+.+--..|.+..|-.++|-.-|..|.-+
T Consensus 434 ~----A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRV 474 (717)
T PF09730_consen 434 L----AGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRV 474 (717)
T ss_pred H----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccH
Confidence 2 3334455777888888899999999999998888877653
No 308
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=47.51 E-value=2e+02 Score=25.30 Aligned_cols=84 Identities=13% Similarity=0.193 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC----CHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKK-------GREESDERE-EALEELKAVELKHIELKDEMGQYADN----DPA 149 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~-------~r~~~~eR~-~ll~~l~~L~~~~~~l~~el~~~~~~----Dp~ 149 (225)
+..+..++.++..+...+..|..+...... .=+.+..|. .+...+..+...+..+-.++..|... .+.
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~ 123 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSE 123 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 344455555555555555555555554433 113344565 66777889999999999999999882 457
Q ss_pred HHHHHHHHHHHHHHHH
Q 027291 150 AFEAMKNAIEVAHAAA 165 (225)
Q Consensus 150 ~i~~~k~~~~~~k~aa 165 (225)
.+..+-.++......+
T Consensus 124 ~l~~~l~ea~~mL~em 139 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEM 139 (264)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666555544
No 309
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=47.34 E-value=39 Score=28.50 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 87 KLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEM 140 (225)
Q Consensus 87 ~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el 140 (225)
.++..+...-.+-+-|+.+| +||..|..+.+.|+.++..|+.|+
T Consensus 4 D~EsklN~AIERnalLE~EL----------dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESEL----------DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 567777777888888888887777
No 310
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=47.32 E-value=35 Score=27.50 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=40.3
Q ss_pred HHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 17 LEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 17 l~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
..+-+=+...||-+||-..+.++|+.+..|.++|..|.+.|.|+-.+.
T Consensus 16 ~al~~L~~r~~s~~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~ 63 (157)
T PRK00117 16 RALRLLARREHSRAELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERF 63 (157)
T ss_pred HHHHHHccchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 333444667899999999999999999999999999999999976544
No 311
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=47.03 E-value=2.1e+02 Score=25.73 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhC
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNF 183 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~ 183 (225)
.+++.++.+|+.+...++..| ..+..+...+-+...+.-|-++-|..-+..-+
T Consensus 152 eeL~~eleele~e~ee~~erl-----------k~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 152 EELLKELEELEAEYEEVQERL-----------KRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 444555555555554444444 44444445555555555555555555444444
No 312
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=46.81 E-value=1.3e+02 Score=23.18 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHH
Q 027291 123 LEELKAVELKHIELKDEMGQYADN---DPAAFEAMKNAI 158 (225)
Q Consensus 123 l~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~ 158 (225)
++...++.+++..+...+..+.++ ++..-..+++.+
T Consensus 7 ~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v 45 (116)
T PF10552_consen 7 MQATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAV 45 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 444555666666666666655554 444444444433
No 313
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.76 E-value=1.6e+02 Score=24.08 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=38.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHH
Q 027291 114 EESDEREEALEELKAVELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAHAAA 165 (225)
Q Consensus 114 ~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~aa 165 (225)
.--..|..++.++..++..+...+.++.++... .|..|+.++.++..+..++
T Consensus 107 ~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~ 161 (218)
T cd07596 107 ETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESAL 161 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Confidence 334578899999999999999999999999764 4666666665555444443
No 314
>PRK14136 recX recombination regulator RecX; Provisional
Probab=46.73 E-value=28 Score=32.20 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
.++..+=..+-+=++--|+-+||...+.++|+.+..|..||+.|...|+|+=+.--
T Consensus 160 ~~~~lk~kAL~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFA 215 (309)
T PRK14136 160 PARSLKGRALGYLSRREYSRAELARKLAPYADESDSVEPLLDALEREGWLSDARFA 215 (309)
T ss_pred cHHHHHHHHHHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHH
Confidence 34444444455557888999999999999999999999999999999999876643
No 315
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.68 E-value=2e+02 Score=25.02 Aligned_cols=7 Identities=14% Similarity=0.040 Sum_probs=4.4
Q ss_pred HHhhcCC
Q 027291 193 MYKDVGI 199 (225)
Q Consensus 193 l~~~fgI 199 (225)
+..-|.|
T Consensus 153 l~~ifpI 159 (302)
T PF10186_consen 153 LSEIFPI 159 (302)
T ss_pred HHHHhCc
Confidence 4556777
No 316
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=46.55 E-value=58 Score=23.32 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=22.4
Q ss_pred HhhccCCCcchhcHHHHHHHhhhcCcc
Q 027291 33 EKLGPKKGVITQSVKDVVQSLVDDDLV 59 (225)
Q Consensus 33 EK~~pKkGI~~~~VKdvlQ~LVDDglV 59 (225)
-.++-.+|++..++..+|..|++.|||
T Consensus 23 t~i~~~~~L~~~~~~~yL~~L~~~gLI 49 (77)
T PF14947_consen 23 TEIMYKANLNYSTLKKYLKELEEKGLI 49 (77)
T ss_dssp HHHHTTST--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHCcCe
Confidence 456666899999999999999999999
No 317
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=46.54 E-value=1.6e+02 Score=24.05 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027291 119 REEALEELKAVELKHIELKD 138 (225)
Q Consensus 119 R~~ll~~l~~L~~~~~~l~~ 138 (225)
+..+...++..+.++..|..
T Consensus 82 k~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 318
>PRK09764 DNA-binding transcriptional repressor MngR; Provisional
Probab=46.36 E-value=14 Score=31.91 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=25.5
Q ss_pred CCcchhcHHHHHHHhhhcCcccccc-cccee
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKDK-IGTSV 68 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~EK-iGssN 68 (225)
=||+-+||..-|+.|+.+|+|...+ .||..
T Consensus 39 ~~VSR~TvR~Al~~L~~eGli~r~~G~GtfV 69 (240)
T PRK09764 39 FGVSRVTVRQALRQLVEQQILESIQGSGTYV 69 (240)
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEecCceeEE
Confidence 5999999999999999999998654 56544
No 319
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=46.35 E-value=1.1e+02 Score=22.07 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAA 165 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aa 165 (225)
.++.+++.+|+.++-.|+.+...=.--+|..|...++.|...+.-.
T Consensus 14 eeL~~~l~eLK~ELf~LR~q~a~g~l~n~~~ir~vRr~IARi~Tv~ 59 (69)
T COG0255 14 EELEEELRELKKELFNLRFQLATGQLENPHRIREVRRDIARILTVL 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3566677777888888877776655558999999999988876543
No 320
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=46.34 E-value=37 Score=27.28 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=50.3
Q ss_pred HHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPS 75 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps 75 (225)
.-+++++=..+ .=|-.|+=-.+|+ ...+.-||+=+|.-|++-|+|.+.|=|-.=+|=+.=+
T Consensus 9 ~eVM~ilW~~~-~~t~~eI~~~l~~~~ews~sTV~TLl~RL~KKg~l~~~kdgr~~~y~pL~~ 70 (123)
T COG3682 9 WEVMEILWSRG-PATVREIIEELPADREWSYSTVKTLLNRLVKKGLLTRKKDGRAFRYSPLLT 70 (123)
T ss_pred HHHHHHHHHcC-CccHHHHHHHHhhcccccHHHHHHHHHHHHhccchhhhhcCCeeeeecccC
Confidence 45666666666 5688898888888 8999999999999999999999999998766655544
No 321
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=46.26 E-value=1e+02 Score=31.27 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027291 84 VYRKLESDLQSSKKRHTELVEQC 106 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~~~i 106 (225)
+.++|+.+|++++.+|++++..|
T Consensus 101 krqel~seI~~~n~kiEelk~~i 123 (907)
T KOG2264|consen 101 KRQELNSEIEEINTKIEELKRLI 123 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333
No 322
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=46.18 E-value=17 Score=26.27 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=40.1
Q ss_pred HHHHHHhhccC--ccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc-eeeEEcccchh
Q 027291 15 KILEIFYESQD--FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT-SVYFWSLPSCA 77 (225)
Q Consensus 15 ril~~f~e~~~--~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs-sN~YWsFps~~ 77 (225)
++|-++....+ +.+.+||=+ ..|+++-.|..+++.|+..|+|.+.+ |- +-|+=+-|.+.
T Consensus 12 ~~l~~la~~~~~~~~s~~eiA~---~~~i~~~~l~kil~~L~~~Gli~s~~-G~~GGy~L~~~~~~ 73 (83)
T PF02082_consen 12 RILLYLARHPDGKPVSSKEIAE---RLGISPSYLRKILQKLKKAGLIESSR-GRGGGYRLARPPEE 73 (83)
T ss_dssp HHHHHHHCTTTSC-BEHHHHHH---HHTS-HHHHHHHHHHHHHTTSEEEET-STTSEEEESS-CCG
T ss_pred HHHHHHHhCCCCCCCCHHHHHH---HHCcCHHHHHHHHHHHhhCCeeEecC-CCCCceeecCCHHH
Confidence 34444444333 578877644 46899999999999999999999887 64 66666655443
No 323
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=46.16 E-value=37 Score=24.88 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=35.4
Q ss_pred CccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc--ceeeEEcccch
Q 027291 25 DFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG--TSVYFWSLPSC 76 (225)
Q Consensus 25 ~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG--ssN~YWsFps~ 76 (225)
..-...||.+.+| ||++..+-+-|..|+++|||...-.. ...+.++....
T Consensus 17 g~~rf~el~~~l~--~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~ 68 (90)
T PF01638_consen 17 GPMRFSELQRRLP--GISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEK 68 (90)
T ss_dssp SSEEHHHHHHHST--TS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HH
T ss_pred CCCcHHHHHHhcc--hhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcC
Confidence 4566678888887 79999999999999999999765332 22345565543
No 324
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=46.13 E-value=2e+02 Score=26.54 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027291 91 DLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 91 ~i~~~~~~i~~l~~~ie~~ 109 (225)
.+..+..+..++...+...
T Consensus 21 ~~~e~~ekR~El~~~~~~~ 39 (294)
T COG1340 21 EIEELKEKRDELRKEASEL 39 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 325
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=46.08 E-value=1e+02 Score=21.50 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 027291 125 ELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIF 173 (225)
Q Consensus 125 ~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~ 173 (225)
++.+|..++..|..++.+++ ..|..++.++..+++.|.|-..-|.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs----~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLS----SDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665 2366666777778877776654333
No 326
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=45.89 E-value=25 Score=28.72 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc-------ccccccee-eEEcc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL-------KDKIGTSV-YFWSL 73 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~-------~EKiGssN-~YWsF 73 (225)
+..+++.=.+||..++...-. +. -.+|...|+++.+|..=++.|.++|.|. -.+.|-.- .||.+
T Consensus 9 ~~~lD~~D~~IL~~Lq~d~R~-s~---~eiA~~lglS~~tv~~Ri~rL~~~GvI~~~~~~v~p~~lg~~~~a~v~i 80 (164)
T PRK11169 9 GKDLDRIDRNILNELQKDGRI-SN---VELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEI 80 (164)
T ss_pred hhhHHHHHHHHHHHhccCCCC-CH---HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHHHhCCCEEEEEEE
Confidence 467899999999999987544 22 4455558999999999999999999986 35777654 45555
No 327
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.87 E-value=1.9e+02 Score=28.38 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh-CCCCHHH
Q 027291 121 EALEELKAVELKHIELKDEMGQYADN-------DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNN-FPQAKEE 189 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~~~-------Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk-~~~~~~~ 189 (225)
..-.++.+++..++++++|+....+. -..-..++++.....+++.--.-.-|--|+.=++.- |-++.++
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhh
Confidence 44445666666666666666555433 222333344444444444443444555555555553 3455543
No 328
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=45.74 E-value=13 Score=32.18 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=25.9
Q ss_pred CCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
=||+.|||.--|+.|+++|+|... =|.+.|-
T Consensus 41 f~VSR~TvRkAL~~L~~eGli~r~-~G~GtfV 71 (236)
T COG2188 41 FGVSRMTVRKALDELVEEGLIVRR-QGKGTFV 71 (236)
T ss_pred HCCcHHHHHHHHHHHHHCCcEEEE-ecCeeEE
Confidence 599999999999999999999775 3555554
No 329
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.66 E-value=2e+02 Score=30.36 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=31.5
Q ss_pred hhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 43 TQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 43 ~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
.-+.-+-+|+| +|.|+--+||.++. -++.......++....++..+.++|+++++.+..+
T Consensus 446 letLn~k~qql--s~kl~Dvr~~~tt~-----kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 446 LETLNFKLQQL--SGKLQDVRVDITTQ-----KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHH--hhhhhhheeccchH-----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555 35555555655442 23333344444445556666666666666665544
No 330
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.61 E-value=2.5e+02 Score=25.87 Aligned_cols=97 Identities=21% Similarity=0.170 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHH
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD---NDPAAFEAMKNAIEVA 161 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~---~Dp~~i~~~k~~~~~~ 161 (225)
+...++.+...+.++.+++..+..... +......+...|+.+....+..|..-.. .=.....+=...+..+
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~------~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l 303 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQK------EYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEEL 303 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHH
Confidence 334445555555555555555555544 2233444444444444444444433222 1222333445567778
Q ss_pred HHHHHhhhhhHHHHHHHHHhhCCCCH
Q 027291 162 HAAANRWTDNIFTLQQWCSNNFPQAK 187 (225)
Q Consensus 162 k~aanrwTDNI~~l~~~~~kk~~~~~ 187 (225)
......+..+.++.-+|++=--+++.
T Consensus 304 ~~~~~~l~GD~llaaa~isY~G~f~~ 329 (344)
T PF12777_consen 304 EEQLKNLVGDSLLAAAFISYLGPFTP 329 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCTSH
T ss_pred HHHhcccHHHHHHHHHHHHHcCCCCH
Confidence 88888889999988888873334444
No 331
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=45.60 E-value=1.3e+02 Score=22.66 Aligned_cols=98 Identities=13% Similarity=0.149 Sum_probs=53.2
Q ss_pred cchHHHHhhccCCCcchhcHHHHHHHhhhc-CccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 27 YLLKELEKLGPKKGVITQSVKDVVQSLVDD-DLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQ 105 (225)
Q Consensus 27 ytlKELEK~~pKkGI~~~~VKdvlQ~LVDD-glV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ 105 (225)
|+++|+-++ .||++-++.=+- +. |++...+-+++.-||+. .....++. +..+ +...--.++++..-
T Consensus 1 yti~EvA~~---~gVs~~tLR~ye----~~~gli~p~r~~~g~R~Yt~--~di~~l~~-I~~l---lr~~G~~l~~i~~~ 67 (99)
T cd04765 1 FSIGEVAEI---LGLPPHVLRYWE----TEFPQLKPVKRAGGRRYYRP--KDVELLLL-IKHL---LYEKGYTIEGAKQA 67 (99)
T ss_pred CCHHHHHHH---HCcCHHHHHHHH----HHcCCCCCcCCCCCCeeeCH--HHHHHHHH-HHHH---HHHCCCCHHHHHHH
Confidence 455555443 588888877553 34 66777665555455443 32222111 1110 11111223333333
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 106 CNALKKGREESDEREEALEELKAVELKHIELKDEM 140 (225)
Q Consensus 106 ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el 140 (225)
+.. .......|++++..+.++..++..|+.++
T Consensus 68 l~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (99)
T cd04765 68 LKE---DGAAAIREEEAEERLPSIRAELLDLRDQL 99 (99)
T ss_pred HHh---ccccccchhhHHHHHHHHHHHHHHHHhcC
Confidence 322 22334578899999999999999988753
No 332
>PRK09990 DNA-binding transcriptional regulator GlcC; Provisional
Probab=45.09 E-value=2e+02 Score=24.64 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=25.6
Q ss_pred CCcchhcHHHHHHHhhhcCccccc-ccccee
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKD-KIGTSV 68 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~E-KiGssN 68 (225)
=||+-.+|.|.|+.|..+|+|.+- ..|+..
T Consensus 41 ~gVSRtpVREAL~~L~~eGlV~~~~~~G~~V 71 (251)
T PRK09990 41 LGFSRSALREGLTVLRGRGIIETAQGRGSFV 71 (251)
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEeCCCeeEE
Confidence 699999999999999999999876 555543
No 333
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=45.05 E-value=2.5e+02 Score=25.84 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=31.8
Q ss_pred hhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027291 43 TQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR 113 (225)
Q Consensus 43 ~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r 113 (225)
...|.-||++-|-..++.+.+. +...+......+.|..+|+.-+.+...++..++.+..-|
T Consensus 103 l~e~Ekvlk~aIq~i~~~~q~~----------~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiR 163 (338)
T KOG3647|consen 103 LLEVEKVLKSAIQAIQVRLQSS----------RAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIR 163 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555555554432 222333334444556666666666666666666666555
No 334
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.95 E-value=2.1e+02 Score=24.93 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 121 EALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
.+-..+..++.++.+|+.++......
T Consensus 74 ~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 74 QLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666666655555543
No 335
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=44.93 E-value=62 Score=24.16 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 84 VYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
+++++.++|+..+.+|++++.++..+..
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~ 29 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEA 29 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888777777776655533
No 336
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=44.84 E-value=38 Score=23.83 Aligned_cols=50 Identities=26% Similarity=0.278 Sum_probs=42.8
Q ss_pred HHHHHHhhccCccchHHHHhhccCCCcc--hhcHHHHHHHhhhcCccccccccc
Q 027291 15 KILEIFYESQDFYLLKELEKLGPKKGVI--TQSVKDVVQSLVDDDLVLKDKIGT 66 (225)
Q Consensus 15 ril~~f~e~~~~ytlKELEK~~pKkGI~--~~~VKdvlQ~LVDDglV~~EKiGs 66 (225)
-||+++.++..+-+-+.|-+.....|.. ..+|.=.|..|=.||++. |.|.
T Consensus 2 ~IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~--~~g~ 53 (66)
T PF08461_consen 2 FILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTR--KVGR 53 (66)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCcc--ccCC
Confidence 3899999999999999999988886666 599999999999999776 5553
No 337
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=44.52 E-value=3.5e+02 Score=27.38 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR----------EESDEREEALEELKAVELKHIELKDEMGQYADN--- 146 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r----------~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~--- 146 (225)
.+...+..|.++......++.+|+..|..++..- ..+..-..+-.++..|.+++..|..++...-.+
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~ 112 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQ 112 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666777777777665321 122222456667777888888887777664332
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhH
Q 027291 147 DPAAFEAMKNAIEVAHAAANRWTDNI 172 (225)
Q Consensus 147 Dp~~i~~~k~~~~~~k~aanrwTDNI 172 (225)
........+..+..+-..+.+|-+..
T Consensus 113 Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 113 LSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233445555666666777776654
No 338
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=44.51 E-value=2.1e+02 Score=24.66 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh---------C
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKK-----GREESDERE-EALEELKAVELKHIELKDEMGQYAD---------N 146 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~-----~r~~~~eR~-~ll~~l~~L~~~~~~l~~el~~~~~---------~ 146 (225)
+..+-.|...++.+.++...|+..|+.... .+...-.|. .+|.+..-++.++.++...+..+.. .
T Consensus 26 ~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~ 105 (191)
T PTZ00446 26 YKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHL 105 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555543321 111111233 4555555556666655555444432 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHh
Q 027291 147 DPAAFEAMKNAIEVAHAAANRW-TDNIFTLQQWCSN 181 (225)
Q Consensus 147 Dp~~i~~~k~~~~~~k~aanrw-TDNI~~l~~~~~k 181 (225)
+-+.+..|+.....++..-... .|.|.-|.+=+..
T Consensus 106 ~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E 141 (191)
T PTZ00446 106 HKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQE 141 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4566666666666665553333 2444444444443
No 339
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=44.14 E-value=1.2e+02 Score=22.81 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.++.+++.+|++++-.|+-+...=.-.+|..|...++++...+.-++
T Consensus 11 eEL~e~L~elkkELf~LR~q~atgql~n~~~ir~iRR~IARilTvl~ 57 (87)
T PRK00461 11 EELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILN 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHH
Confidence 34555555555665555544333333467777777777776655443
No 340
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=44.00 E-value=3.1e+02 Score=26.63 Aligned_cols=102 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKG-REESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKN 156 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~-r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~ 156 (225)
...++..+++|+++...+..+........+-.... +.....|-..+.++.++.++..+..+ -|..+..+.+
T Consensus 50 ~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n--------~~~~l~~~~~ 121 (459)
T KOG0288|consen 50 LQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFEN--------AELALREMRR 121 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--------chhhHHHHHH
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhcCCCCC
Q 027291 157 AIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDVGIPED 202 (225)
Q Consensus 157 ~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~fgIp~d 202 (225)
+.++.-.-+. ..+-.|..... ....+|+|++
T Consensus 122 ~~r~~e~la~------------~~~~l~~~~~r---~~s~~ga~~~ 152 (459)
T KOG0288|consen 122 KMRIAERLAE------------ALKDLGLKDLR---RQSVDGAVPR 152 (459)
T ss_pred HHHHHHHHHH------------Hhhhcchhhhh---hhhhcCCCcc
No 341
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.88 E-value=3.9e+02 Score=27.71 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=12.4
Q ss_pred CCCCHHHHHHH---HHHHHhhc
Q 027291 5 RGLSLEEKRGK---ILEIFYES 23 (225)
Q Consensus 5 KglS~eEKr~r---il~~f~e~ 23 (225)
.|+++.+-... ++++|+..
T Consensus 418 ~GtDp~eg~ala~aile~l~~~ 439 (782)
T PRK00409 418 AGTDPDEGAALAISILEYLRKR 439 (782)
T ss_pred CCCCHHHHHHHHHHHHHHHHHC
Confidence 57888776544 56666654
No 342
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=43.81 E-value=84 Score=33.65 Aligned_cols=66 Identities=8% Similarity=0.044 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNALKK-GREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~-~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
-....+.+|+++++.++++++.++..+....- .+.+.+-...--.++.+++.+++++++.|..+..
T Consensus 839 D~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 839 DLAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667778888888888888888888877544 2334444444444556777777777777777765
No 343
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=43.79 E-value=1.3e+02 Score=26.42 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 120 EEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
..+.+++..|+.++++...+|+...
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~ 178 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQ 178 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555443
No 344
>PF14282 FlxA: FlxA-like protein
Probab=43.46 E-value=1.5e+02 Score=22.75 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027291 83 NVYRKLESDLQSSKKRHTELVE 104 (225)
Q Consensus 83 ~~~~~l~~~i~~~~~~i~~l~~ 104 (225)
..+..|+++|..+..++..|..
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444444444443
No 345
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=43.36 E-value=3.8e+02 Score=31.05 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHHH
Q 027291 88 LESDLQSSKKRHTELVEQCNALKKGREES-DEREEALEELKAVELKHIEL 136 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~~k~~r~~~-~eR~~ll~~l~~L~~~~~~l 136 (225)
+++.+.++...|.+|.+.++..+..|... -.|..+-.++++|+.++...
T Consensus 1095 l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555554444433221 23445555555555444444
No 346
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=43.19 E-value=4.1e+02 Score=29.45 Aligned_cols=91 Identities=19% Similarity=0.284 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhhCCHH---HHH------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCC
Q 027291 118 EREEALEELKAVELKHIELKDEMG--QYADNDPA---AFE------AMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQA 186 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~--~~~~~Dp~---~i~------~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~ 186 (225)
++..++.+..+++..+..++.||. .|.+.+.. .+- -....+-.+.. |+.| +|+.|=.-++|..
T Consensus 1056 e~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~-aLD~-----Aim~fHs~KMeei 1129 (1294)
T KOG0962|consen 1056 EKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDKYYK-ALDK-----AIMQFHSMKMEEI 1129 (1294)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHHHHH
Confidence 455666777777777777777776 23322211 111 11111111111 3333 5678888888888
Q ss_pred HHHHHHHHhhcCCCCCccccccCCCCCC
Q 027291 187 KEELEQMYKDVGIPEDFDYLELSPVPLS 214 (225)
Q Consensus 187 ~~~~~~l~~~fgIp~d~dy~e~~~~~~~ 214 (225)
..-|+.+=+.-+=..|.||+.=...+.|
T Consensus 1130 N~iI~elW~~tYrG~Did~IrIrsD~~~ 1157 (1294)
T KOG0962|consen 1130 NRIIRELWRKTYRGTDIDYIKIRSDSVS 1157 (1294)
T ss_pred HHHHHHHHHhccCCCCcceEEEeecccc
Confidence 8888877777777789999985555444
No 347
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=43.16 E-value=2e+02 Score=28.78 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHH
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGRE-ESDEREEALEELKAVELKHI 134 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~-~~~eR~~ll~~l~~L~~~~~ 134 (225)
...+..+..+..++..++.+...|...|..++...+ ++--|..+..+.+.|.+++.
T Consensus 158 ~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 158 NTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334455555666666666666666666666555432 22233333333444433333
No 348
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=43.15 E-value=67 Score=22.10 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=34.1
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.+|+..+++.. ++.++|-. .-||+..+|...++.|-++|++-..+
T Consensus 3 ~~il~~L~~~~--~~~~eLa~---~l~vS~~tv~~~l~~L~~~g~~i~~~ 47 (69)
T TIGR00122 3 LRLLALLADNP--FSGEKLGE---ALGMSRTAVNKHIQTLREWGVDVLTV 47 (69)
T ss_pred HHHHHHHHcCC--cCHHHHHH---HHCCCHHHHHHHHHHHHHCCCeEEec
Confidence 36778877543 45665544 45999999999999999999976665
No 349
>PRK11281 hypothetical protein; Provisional
Probab=42.93 E-value=4.3e+02 Score=28.80 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGRE-------ESDEREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~-------~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
...+.+.+.+++.++...+++.++...++..+..-. +...=.++-+.+.++..++...++.|..+
T Consensus 76 ~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777777777777777777776655211 11111235555566666666666666665
No 350
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.91 E-value=2.2e+02 Score=25.38 Aligned_cols=80 Identities=15% Similarity=0.290 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C--CC-----------------------c------HH----HH
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNALKKG----R--EE-----------------------S------DE----RE 120 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~----r--~~-----------------------~------~e----R~ 120 (225)
.++.++..+.+++++.+.-+..|+..|...... + .+ + .. -.
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLp 82 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILP 82 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHH
Confidence 467778888888888888888888888776532 1 00 0 00 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 027291 121 EALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHA 163 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~ 163 (225)
-+..+..-++.++.+|+.|+.+.. ..+..++.++..++.
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~----~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQ----QTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 233556666677777777765554 346666666666663
No 351
>PRK11402 DNA-binding transcriptional regulator FrlR; Provisional
Probab=42.85 E-value=17 Score=31.30 Aligned_cols=31 Identities=16% Similarity=0.422 Sum_probs=26.0
Q ss_pred CCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
=||+-+||..-|..|++||+|.... |.++|.
T Consensus 43 ~~VSR~TvR~Al~~L~~eGli~r~~-G~GTfV 73 (241)
T PRK11402 43 YNVSRITIRKAISDLVADGVLIRWQ-GKGTFV 73 (241)
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEec-CceeEE
Confidence 4999999999999999999998763 555554
No 352
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=42.71 E-value=1e+02 Score=25.36 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 027291 84 VYRKLESDLQSSK-KRHTELVEQCNALKKGR--EESDEREEALEELKAVELKHIELKDEMGQYADNDP 148 (225)
Q Consensus 84 ~~~~l~~~i~~~~-~~i~~l~~~ie~~k~~r--~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp 148 (225)
-+++|+++++.+. .++-++.+.|..+...- .+..+=.+.-.++..++.++..|+..|....=.||
T Consensus 9 G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A~iid~ 76 (156)
T TIGR01461 9 GYEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLENLKVVDY 76 (156)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcCEEeCC
Confidence 4567888888886 47788888888776532 23333344555667778888888888877655444
No 353
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=42.57 E-value=72 Score=22.93 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcc-hh-cHHHHHHHhhhcCccccccccceeeEEcccchh
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVI-TQ-SVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCA 77 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~-~~-~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~ 77 (225)
.+.-...|.+++. ++.+.+-.||=..+.+.||. .| ||==-|.. =|+|.+- -|.+.|++++|.+.
T Consensus 3 K~~R~~~I~~li~-~~~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLke---L~~vKv~-~~~g~~~Y~l~~~~ 68 (70)
T PF01316_consen 3 KSKRQELIKELIS-EHEISSQEELVELLEEEGIEVTQATISRDLKE---LGAVKVP-DGNGKYRYVLPEET 68 (70)
T ss_dssp HHHHHHHHHHHHH-HS---SHHHHHHHHHHTT-T--HHHHHHHHHH---HT-EEEE-CTTSSEEEE-TTST
T ss_pred HHHHHHHHHHHHH-HCCcCCHHHHHHHHHHcCCCcchhHHHHHHHH---cCcEEee-CCCCCEEEEecCcC
Confidence 3444455555555 45599999999999998987 22 22222222 2888865 78889999999864
No 354
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=42.54 E-value=74 Score=26.16 Aligned_cols=57 Identities=21% Similarity=0.203 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceee
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVY 69 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~ 69 (225)
.+.=...|..++. .+.+=..+||.+.. +|.+-||.+.++-|-.+|+|..++=|-.-+
T Consensus 8 ~edYL~~Iy~l~~-~~~~~~~~diA~~L---~Vsp~sVt~ml~rL~~~GlV~~~~y~gi~L 64 (154)
T COG1321 8 EEDYLETIYELLE-EKGFARTKDIAERL---KVSPPSVTEMLKRLERLGLVEYEPYGGVTL 64 (154)
T ss_pred HHHHHHHHHHHHh-ccCcccHHHHHHHh---CCCcHHHHHHHHHHHHCCCeEEecCCCeEE
Confidence 3333445555555 66777788887766 789999999999999999999987665443
No 355
>PLN02381 valyl-tRNA synthetase
Probab=42.21 E-value=84 Score=33.74 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKK-GREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~-~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
.-....+.+|+++++.++++++.++..+....= .+.+.+-...-.+++.+++.+++.++..|..+.
T Consensus 993 iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 1059 (1066)
T PLN02381 993 VNAEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKRLE 1059 (1066)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777777777777777777766655421 233444455555556677777777777666654
No 356
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=42.16 E-value=17 Score=30.94 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=27.0
Q ss_pred ccCCCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 36 GPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
|-.=||+-+||..-|+.|+++|+|...+ |.++|-
T Consensus 39 a~~~~VSR~TvR~Al~~L~~eGli~r~~-G~GtfV 72 (238)
T TIGR02325 39 AERFGVNRHTVRRAIAALVERGLLRAEQ-GRGTFV 72 (238)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEec-CCEEEE
Confidence 3336999999999999999999998864 444443
No 357
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=42.13 E-value=14 Score=35.16 Aligned_cols=31 Identities=26% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHHHHHHhhhcCccccccccceeeEEcccch
Q 027291 46 VKDVVQSLVDDDLVLKDKIGTSVYFWSLPSC 76 (225)
Q Consensus 46 VKdvlQ~LVDDglV~~EKiGssN~YWsFps~ 76 (225)
+.+.++.||++|+|..||.-+.|+=..+||.
T Consensus 259 l~~al~dlv~eGlI~eek~dsFniP~Y~ps~ 289 (386)
T PLN02668 259 FQDAWDDLVQEGLVTSEKRDSFNIPVYAPSL 289 (386)
T ss_pred HHHHHHHHHHcCCCCHHHHhcccCcccCCCH
Confidence 7789999999999999999999999999985
No 358
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.86 E-value=3.5e+02 Score=29.99 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-HHHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGREE-SDEREEALEELKAVELKHIELKDEMGQYADNDP-AAFEAMKNAIE 159 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~-~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp-~~i~~~k~~~~ 159 (225)
-..++.|.++|..+...+..++..|......-.- ..+-..|-.+...|....++|..+++++++.|+ .++.-.+..-.
T Consensus 1231 ~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~ 1310 (1758)
T KOG0994|consen 1231 ASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYE 1310 (1758)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Confidence 3344444455555555555555444443332211 123456666777788888899999999999886 55666666665
Q ss_pred HHHHHHHhhhhhH
Q 027291 160 VAHAAANRWTDNI 172 (225)
Q Consensus 160 ~~k~aanrwTDNI 172 (225)
...+|..|-.+.+
T Consensus 1311 ~s~ea~~r~~~s~ 1323 (1758)
T KOG0994|consen 1311 QSAEAERRVDASS 1323 (1758)
T ss_pred HHHHHHHhhhhhh
Confidence 5555555544444
No 359
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=41.84 E-value=3.6e+02 Score=27.00 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=17.6
Q ss_pred hcHHHHHHHhhhcCccccccc
Q 027291 44 QSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 44 ~~VKdvlQ~LVDDglV~~EKi 64 (225)
....++|+.|.+-|.||.+..
T Consensus 16 ~~~~~~l~~L~~lg~vhi~~~ 36 (646)
T PRK05771 16 SYKDEVLEALHELGVVHIEDL 36 (646)
T ss_pred HHHHHHHHHHHhCCCEEEeec
Confidence 456789999999999999865
No 360
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=41.84 E-value=87 Score=24.32 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=20.8
Q ss_pred ccCccchHHHHhhcc----C-CCcchhcHHHHHHH
Q 027291 23 SQDFYLLKELEKLGP----K-KGVITQSVKDVVQS 52 (225)
Q Consensus 23 ~~~~ytlKELEK~~p----K-kGI~~~~VKdvlQ~ 52 (225)
..-+|+-.+|+.+.- + .|++...|++++..
T Consensus 33 gyR~Y~~~~l~~l~~I~~lr~~G~~L~~I~~~l~~ 67 (118)
T cd04776 33 QTRVYSRRDRARLKLILRGKRLGFSLEEIRELLDL 67 (118)
T ss_pred CccccCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 456788888877632 2 78777778887764
No 361
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.78 E-value=2.3e+02 Score=24.53 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
.....++..+..++..+..++..+..++..++..
T Consensus 56 ~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 56 LEIQQLKREIEELRERLERLRERIERLRKRIEQK 89 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555444
No 362
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=41.76 E-value=1.5e+02 Score=22.44 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=45.4
Q ss_pred CCcchhcHHHHHHHhhhcCcccc-ccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLK-DKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESD 117 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~-EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~ 117 (225)
.||++.++.-+-+ -|++.. .+-+++ |+.|.......+ ..+..+. ++--.++++..-+.....+.....
T Consensus 10 ~gvs~~tlr~ye~----~gll~~~~r~~~g--yR~Y~~~~l~~l-~~I~~lr----~~G~sL~eI~~~l~~~~~~~~~~~ 78 (113)
T cd01109 10 TGLSADTLRYYEK----EGLLPPVKRDENG--IRDFTEEDLEWL-EFIKCLR----NTGMSIKDIKEYAELRREGDSTIP 78 (113)
T ss_pred HCcCHHHHHHHHH----CCCCCCCCcCCCC--CccCCHHHHHHH-HHHHHHH----HcCCCHHHHHHHHHHHccCCccHH
Confidence 6999999887744 599954 443333 555555443332 2222222 111223333333332222222223
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 027291 118 ERE-EALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 118 eR~-~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
++. -+.+++..|+.+++.|+..+..+
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l 105 (113)
T cd01109 79 ERLELLEEHREELEEQIAELQETLAYL 105 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 34455666666666666555443
No 363
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.74 E-value=1.1e+02 Score=29.93 Aligned_cols=19 Identities=5% Similarity=0.120 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027291 91 DLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 91 ~i~~~~~~i~~l~~~ie~~ 109 (225)
.+++.+.+..+|+.+|+.+
T Consensus 70 ALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 364
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.70 E-value=3.7e+02 Score=26.87 Aligned_cols=48 Identities=21% Similarity=0.136 Sum_probs=25.4
Q ss_pred ccceeeEEcccchhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 64 IGTSVYFWSLPSCAGNQLRNVYRK----LESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 64 iGssN~YWsFps~~~~~~~~~~~~----l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
++....+..+.........+.++. ....+.++..++..++.++.....
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~ 412 (650)
T TIGR03185 361 TTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDK 412 (650)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556665544444444332 334556666666666666655543
No 365
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=41.62 E-value=20 Score=24.79 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=24.1
Q ss_pred ccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 36 GPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
|.-.|++..+|--+|..|.++|+|...+
T Consensus 35 A~~~g~sr~tv~r~l~~l~~~g~I~~~~ 62 (76)
T PF13545_consen 35 ADMLGVSRETVSRILKRLKDEGIIEVKR 62 (76)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEcC
Confidence 4446999999999999999999999653
No 366
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.49 E-value=1.6e+02 Score=24.51 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027291 125 ELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 125 ~l~~L~~~~~~l~~el~~ 142 (225)
+.+.+++++++|+.+|++
T Consensus 155 ~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 344444444555544444
No 367
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=41.47 E-value=2.8e+02 Score=27.47 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CHHHHHHHHHHHHHH
Q 027291 89 ESDLQSSKKRHTELVEQCNALKKGREES-DEREEALEELKAVELKHIELKDEMGQYADN------DPAAFEAMKNAIEVA 161 (225)
Q Consensus 89 ~~~i~~~~~~i~~l~~~ie~~k~~r~~~-~eR~~ll~~l~~L~~~~~~l~~el~~~~~~------Dp~~i~~~k~~~~~~ 161 (225)
...++.+..+|..+-..++.+...|..- .....+...+..+......|..++..++.+ +.+.+..+.+++..+
T Consensus 277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l 356 (560)
T PF06160_consen 277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKEL 356 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 3444555555666666666555554322 334566677777788888888887777654 334444444444333
No 368
>PRK10869 recombination and repair protein; Provisional
Probab=41.47 E-value=3.6e+02 Score=26.64 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYAD---NDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWC 179 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~---~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~ 179 (225)
..+...+.++...+..+..+|..|.+ .||++++.+...+..+.....+|.-.|.-|..|.
T Consensus 264 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~ 326 (553)
T PRK10869 264 SGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHH 326 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34555555555555555555555553 3666666666655555555555554444444443
No 369
>PRK06798 fliD flagellar capping protein; Validated
Probab=41.40 E-value=2.4e+02 Score=27.10 Aligned_cols=54 Identities=7% Similarity=0.195 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 83 NVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 83 ~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
.+...|+.++..+..++..++.+++. -+..+.+++..|+..+.+|+.+...+..
T Consensus 379 ~r~~~l~~~i~~l~~~~~~~e~rl~~---------~e~~l~~qf~ale~~ms~lnsQ~s~l~~ 432 (440)
T PRK06798 379 ERSKSIDNRVSKLDLKITDIDTQNKQ---------KQDNIVDKYQKLESTLAALDSQLKTIKA 432 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777776653 2457778888888888888888766553
No 370
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=41.37 E-value=2.4e+02 Score=24.50 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 027291 149 AAFEAMKNAIEVAHAAANRWTDNIFTLQQ 177 (225)
Q Consensus 149 ~~i~~~k~~~~~~k~aanrwTDNI~~l~~ 177 (225)
..+..+...+..+-+.+..|-.+.-.+..
T Consensus 197 ~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 197 RRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665555443
No 371
>PF11198 DUF2857: Protein of unknown function (DUF2857); InterPro: IPR021364 This is a bacterial family of uncharacterised proteins.
Probab=41.21 E-value=94 Score=26.17 Aligned_cols=51 Identities=18% Similarity=0.168 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHH------HHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhcCCCC
Q 027291 147 DPAAFEAMKNAIE------VAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDVGIPE 201 (225)
Q Consensus 147 Dp~~i~~~k~~~~------~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~fgIp~ 201 (225)
|++.+..+-.... ...+.+-+-.-++.+|..| ||+++.++...|+-+|||.
T Consensus 59 n~~~l~~~L~~~~~~~~~~~~idr~L~lGAS~~mm~~~----FGls~~ev~~rR~llgi~~ 115 (180)
T PF11198_consen 59 NHDVLWRLLEQARREQQEQQLIDRALRLGASIEMMQRL----FGLSSAEVAARRRLLGIPV 115 (180)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH----HCCCHHHHHHHHHHhCCCC
Confidence 6666666554443 4455677778888888777 8999999999999999995
No 372
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=41.12 E-value=1.3e+02 Score=21.42 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.++.+++.+|++++=.|+-+...=+-.+|..|...++++...+...+
T Consensus 15 ~eL~~~l~elk~elf~LRfq~atgql~n~~~ir~~RrdIARikTil~ 61 (67)
T CHL00154 15 SEISEEIIKTKKELFDLRLKKATRQNFKPHLFKHKKHRLAQLLTLLS 61 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666654433334489999999999888876554
No 373
>PHA02078 hypothetical protein
Probab=41.11 E-value=9.9 Score=26.21 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.9
Q ss_pred ccCccchHHHHhhccC-CCcc-hhcHHHH
Q 027291 23 SQDFYLLKELEKLGPK-KGVI-TQSVKDV 49 (225)
Q Consensus 23 ~~~~ytlKELEK~~pK-kGI~-~~~VKdv 49 (225)
++.=|+|-|||.+.|= +||. ++.+|++
T Consensus 18 ~h~~ySL~~ienMmP~ER~Iylsll~k~l 46 (54)
T PHA02078 18 QHHKYSLHELENMMPWEREIYAALLIQYI 46 (54)
T ss_pred HhccCCHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4577999999999999 9998 5555554
No 374
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.04 E-value=2.5e+02 Score=24.61 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH--HHH-HHHHHHHHHHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGREESD--ERE-EALEELKAVELKHIELKD 138 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~--eR~-~ll~~l~~L~~~~~~l~~ 138 (225)
..+-..+.++|..+..++..++.+|...+.|-.... .|. ..|.+...++.+...|..
T Consensus 25 ~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~ 84 (218)
T KOG1655|consen 25 NKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQ 84 (218)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666666666666655432222 222 445555555555555544
No 375
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=40.77 E-value=1.3e+02 Score=30.01 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=29.2
Q ss_pred hhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 43 TQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 43 ~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
.++|-|+++.|-|-|- ++-+ -++....+-..+..+++++..+...+.+++.++...
T Consensus 197 q~~y~~~~KelrdtN~----q~~s-------~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~ 252 (596)
T KOG4360|consen 197 QQLYGDCVKELRDTNT----QARS-------GQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYL 252 (596)
T ss_pred HHHHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5677788888877331 1100 123334444555555555555555555555555443
No 376
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=40.69 E-value=2.3e+02 Score=24.06 Aligned_cols=64 Identities=28% Similarity=0.374 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----C-C----CCcHHHHHHHHHHHHHHHHHHH-------HHHHHHHHh
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKK-----G-R----EESDEREEALEELKAVELKHIE-------LKDEMGQYA 144 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~-----~-r----~~~~eR~~ll~~l~~L~~~~~~-------l~~el~~~~ 144 (225)
..-+.+|+.++...+.++.+++..+..... . + +.+.+=...+.+|++=+..+.. |+.+|+...
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999954311 0 1 1133344566666666666666 555555544
Q ss_pred h
Q 027291 145 D 145 (225)
Q Consensus 145 ~ 145 (225)
.
T Consensus 95 ~ 95 (182)
T PF15035_consen 95 K 95 (182)
T ss_pred H
Confidence 3
No 377
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=40.39 E-value=87 Score=24.74 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
.++=...|+.+.... .+-+++||-.. -||++.+|-..|+.|.+.|+|..++.+
T Consensus 6 ~edyL~~I~~l~~~~-~~~~~~ela~~---l~vs~~svs~~l~~L~~~Gli~~~~~~ 58 (142)
T PRK03902 6 MEDYIEQIYLLIEEK-GYARVSDIAEA---LSVHPSSVTKMVQKLDKDEYLIYEKYR 58 (142)
T ss_pred HHHHHHHHHHHHhcC-CCcCHHHHHHH---hCCChhHHHHHHHHHHHCCCEEEecCc
Confidence 455555555555444 34466655443 588999999999999999999866543
No 378
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=40.38 E-value=2.1e+02 Score=23.55 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
.+.++..+..++..++..+......|+..+.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666666666666666666555
No 379
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=40.30 E-value=23 Score=30.44 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=25.7
Q ss_pred CCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
=||+-+||..-|..|+++|+|..- =|.+.|-
T Consensus 45 ~~VSR~TVR~Al~~L~~eGli~r~-~G~GtfV 75 (241)
T PRK10079 45 YEVNRHTLRRAIDQLVEKGWVQRR-QGVGVLV 75 (241)
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEe-cCCEEEE
Confidence 699999999999999999999865 3555544
No 380
>smart00437 TOP1Ac Bacterial DNA topoisomerase I DNA-binding domain. Bacterial DNA topoisomerase I and III, Eukaryotic DNA topoisomeraes III, reverse gyrase alpha subunit
Probab=40.22 E-value=22 Score=31.65 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=38.3
Q ss_pred cCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccce
Q 027291 24 QDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTS 67 (225)
Q Consensus 24 ~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGss 67 (225)
.-.|+|=+|-+.|.+ -|+++..+-++.|+|-+.|+|.==+-.|.
T Consensus 10 P~pf~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYe~g~iTYPRTds~ 54 (259)
T smart00437 10 PPPFTTSTLQQEASRKLGFSAKKTMQIAQKLYEKGLITYPRTDST 54 (259)
T ss_pred CCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCeeEecCCCCC
Confidence 468999999999999 69999999999999999999975555444
No 381
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=40.18 E-value=90 Score=19.29 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 119 REEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 119 R~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
-..++.+.+.|+...++|+..|+.+..
T Consensus 3 EqkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 3 EQKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788888888888888888887764
No 382
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=40.16 E-value=3.7e+02 Score=26.40 Aligned_cols=87 Identities=8% Similarity=0.144 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh--hC--CCCHHHHHHHHhhcCCCC
Q 027291 126 LKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSN--NF--PQAKEELEQMYKDVGIPE 201 (225)
Q Consensus 126 l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~k--k~--~~~~~~~~~l~~~fgIp~ 201 (225)
+.=|+.++..++..+.............++.++..+.+.-.+.+..--.|..=++. |. +-.+-.++.+-..-|.|+
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~sGL~~ 221 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLRE 221 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHHhCCCc
Confidence 44455666666666655554445555666777777766656666555555555542 32 333445666777789999
Q ss_pred CccccccCCCC
Q 027291 202 DFDYLELSPVP 212 (225)
Q Consensus 202 d~dy~e~~~~~ 212 (225)
+.||..-..+.
T Consensus 222 ~~~y~~Q~~~~ 232 (475)
T PRK10361 222 GYEYETQVSIE 232 (475)
T ss_pred CCcceeeeecc
Confidence 99997755553
No 383
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=40.14 E-value=19 Score=30.74 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=25.0
Q ss_pred CCcchhcHHHHHHHhhhcCcccccc-ccce
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKDK-IGTS 67 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~EK-iGss 67 (225)
=||+-+||..-|+.|+++|+|...+ -||.
T Consensus 35 ~~VSR~TVR~Al~~L~~eGli~r~~G~Gtf 64 (230)
T TIGR02018 35 YGCSRMTVNRALRELTDAGLLERRQGVGTF 64 (230)
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEecCCEEE
Confidence 6999999999999999999998764 4543
No 384
>PF15294 Leu_zip: Leucine zipper
Probab=40.09 E-value=2.9e+02 Score=25.20 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
+...+.+|+++.+.++.++..++.....+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~ 158 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSA 158 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666555544433
No 385
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=40.00 E-value=98 Score=30.22 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhH
Q 027291 148 PAAFEAMKNAIEVAHAAANRWTDNI 172 (225)
Q Consensus 148 p~~i~~~k~~~~~~k~aanrwTDNI 172 (225)
|+.+.++++++...--.+...+|+-
T Consensus 82 ~d~~~~~~qqiAn~~lKv~~l~da~ 106 (514)
T PF11336_consen 82 NDDATEMRQQIANAQLKVESLEDAA 106 (514)
T ss_pred hHHHHHHHHHHHhhhhhHHHHhhHH
Confidence 5566666666655544444444443
No 386
>TIGR02895 spore_sigI RNA polymerase sigma-I factor. Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PubMed:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PubMed:16311624).
Probab=39.69 E-value=1.1e+02 Score=26.62 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhcC
Q 027291 119 REEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDVG 198 (225)
Q Consensus 119 R~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~fg 198 (225)
|....+++..+++++.+.--.+..+-++-|.-=+.....+.+|+.. .+|=. |..|+.++-.++-+++ -+.+|
T Consensus 116 ~~~~~eEI~~~~~~L~~~gi~~~dLv~~sPkh~d~r~~~i~ia~~~----~~~~~-l~~~l~~kk~LP~k~l---~~~~~ 187 (218)
T TIGR02895 116 NENRRLEILEYKKLLKQFGIEFVELVKVSPKHRDTRKKAIKIAKVI----VENEE-LLEYLIRKKKLPIKEI---EERVR 187 (218)
T ss_pred cccHHHHHHHHHHHHHHcCCcHHHHhhcCCCCHHHHHHHHHHHHHH----hcCHH-HHHHHHHhCCCCHHHH---HHHcC
Confidence 3344456666667776666667777778887666655555555544 45543 5666666667777664 34666
Q ss_pred CC
Q 027291 199 IP 200 (225)
Q Consensus 199 Ip 200 (225)
++
T Consensus 188 v~ 189 (218)
T TIGR02895 188 IS 189 (218)
T ss_pred CC
Confidence 65
No 387
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=39.67 E-value=28 Score=25.91 Aligned_cols=46 Identities=28% Similarity=0.373 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL 60 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~ 60 (225)
+.-.+||..++.... =+..+| +...|+++.+|-..++.|.+.|+|.
T Consensus 3 ~~D~~il~~L~~~~~-~~~~~l---a~~l~~s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 3 EIDRKILEELQKDAR-ISLAEL---AKKVGLSPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHHhCC-CCHHHH---HHHHCcCHHHHHHHHHHHHHCCCee
Confidence 345688999998753 345554 4445999999999999999999886
No 388
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=39.33 E-value=2.9e+02 Score=24.93 Aligned_cols=112 Identities=11% Similarity=0.249 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHH-----------HHHHHHHHHHHHHHhhCCH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDER-EEALEELKAV-----------ELKHIELKDEMGQYADNDP 148 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR-~~ll~~l~~L-----------~~~~~~l~~el~~~~~~Dp 148 (225)
++..+.+|.+-...+...-..|...|..... .|... ..+|.+...+ ..+++.++.+|..+.+---
T Consensus 4 rr~sl~el~~h~~~L~~~N~~L~~~IqdtE~---st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e 80 (258)
T PF15397_consen 4 RRTSLQELKKHEDFLTKLNKELIKEIQDTED---STALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEE 80 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHHh---hHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544322 11111 1334333333 2345555556666555444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHh
Q 027291 149 AAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYK 195 (225)
Q Consensus 149 ~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~ 195 (225)
..+..+..++..+...+..--.-+-.|..|--+-|.+-.=.|..+.+
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~r 127 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVR 127 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45555555555555555555555566666666666554444444443
No 389
>PRK14999 histidine utilization repressor; Provisional
Probab=39.20 E-value=20 Score=30.79 Aligned_cols=30 Identities=13% Similarity=0.412 Sum_probs=25.0
Q ss_pred CCcchhcHHHHHHHhhhcCccccccccceee
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKDKIGTSVY 69 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~ 69 (225)
=||+-+||..-|..|+++|+|...+ |.+.|
T Consensus 46 ~gVSR~TVR~Al~~L~~eGli~r~~-GkGTf 75 (241)
T PRK14999 46 YGFSRMTINRALRELTDEGWLVRLQ-GVGTF 75 (241)
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEec-CcEEE
Confidence 6999999999999999999997653 44444
No 390
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=39.03 E-value=4.1e+02 Score=26.53 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=13.8
Q ss_pred HhhCCCCHHHHHHHHhhcCCCC
Q 027291 180 SNNFPQAKEELEQMYKDVGIPE 201 (225)
Q Consensus 180 ~kk~~~~~~~~~~l~~~fgIp~ 201 (225)
..--..+..+++.|++-|+++.
T Consensus 254 ~~lk~ap~~D~~~L~~~~~~~~ 275 (555)
T TIGR03545 254 AELKKAPQNDLKRLENKYAIKS 275 (555)
T ss_pred HHHHhccHhHHHHHHHHhCCCc
Confidence 3333566777777777776653
No 391
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=38.88 E-value=95 Score=31.55 Aligned_cols=44 Identities=11% Similarity=0.238 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 027291 122 ALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWC 179 (225)
Q Consensus 122 ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~ 179 (225)
.-.++.+|+.+++.+.+....+. .++...+.-+-+=||+|.+|=
T Consensus 604 ~~~e~~~l~~~~~~~ekr~~RLk--------------evf~~ks~eFr~av~~llGyk 647 (722)
T PF05557_consen 604 QEKEIAELKAELASAEKRNQRLK--------------EVFKAKSQEFREAVYSLLGYK 647 (722)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHSEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhcce
Confidence 33445555555555554443333 345555666667777888773
No 392
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=38.84 E-value=3.2e+02 Score=27.44 Aligned_cols=88 Identities=11% Similarity=0.159 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh------CCHHHHHHHHHHH
Q 027291 86 RKLESDLQSSKKRHTELVEQCNALKKGREESDERE-EALEELKAVELKHIELKDEMGQYAD------NDPAAFEAMKNAI 158 (225)
Q Consensus 86 ~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~-~ll~~l~~L~~~~~~l~~el~~~~~------~Dp~~i~~~k~~~ 158 (225)
++...++...+.++..+-+-++.+-+.|..-.++. .+-..|...+..+..|+.+++..+. .+...+.+..+++
T Consensus 277 d~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL 356 (570)
T COG4477 277 DEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKEL 356 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 33444444445555555555554444443323322 3344456666666666666665543 3566677777777
Q ss_pred HHHHHHHHhhhhhHH
Q 027291 159 EVAHAAANRWTDNIF 173 (225)
Q Consensus 159 ~~~k~aanrwTDNI~ 173 (225)
+.+.....-.|+||.
T Consensus 357 ~el~~~~~~i~~~~~ 371 (570)
T COG4477 357 KELESVLDEILENIE 371 (570)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777666666653
No 393
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=38.69 E-value=5.5e+02 Score=27.93 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH-------HHHHHHHHHHHHHHhhhhhHHHHH
Q 027291 118 EREEALEELKAVELKHIELKDEMGQYADNDPAAFE-------AMKNAIEVAHAAANRWTDNIFTLQ 176 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~-------~~k~~~~~~k~aanrwTDNI~~l~ 176 (225)
++..+-..+..++.++..+..+...|.+.|-+.+. ..+.+...+....+..|..+--|.
T Consensus 314 ~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~ 379 (1201)
T PF12128_consen 314 ELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIE 379 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777777778776533333 333444444444444444444333
No 394
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=38.50 E-value=1.1e+02 Score=23.18 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=34.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC---cHHHHHHHHHHH
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR--EE---SDEREEALEELK 127 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r--~~---~~eR~~ll~~l~ 127 (225)
...+.+.+.++|+++.+.+..+++-.+..+...+... ++ +-.|..++.+|.
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~~V~d~L~ 79 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRDSVIDQLQ 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHHHHHHHHH
Confidence 3445566688889999988888888888887775532 11 235677776664
No 395
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=38.14 E-value=3.4e+02 Score=25.37 Aligned_cols=48 Identities=13% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhC----CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhC
Q 027291 129 VELKHIELKDEMGQYADN----DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNF 183 (225)
Q Consensus 129 L~~~~~~l~~el~~~~~~----Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~ 183 (225)
-++++..+...+++.+.. +++.+++++.+++.++. .++-+.+++-++-
T Consensus 44 QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~-------~l~DmEa~LPkkN 95 (330)
T PF07851_consen 44 QKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRC-------QLFDMEAFLPKKN 95 (330)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHh-------hHHHHHhhCCCCC
Confidence 334455555555555332 45666666665554433 3445667776663
No 396
>PRK05287 hypothetical protein; Provisional
Probab=38.03 E-value=1.6e+02 Score=26.36 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhcCCCCCc
Q 027291 130 ELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDVGIPEDF 203 (225)
Q Consensus 130 ~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~fgIp~d~ 203 (225)
-+++++.+..|..+..+ |.+.++.+-.++..+..+++.-+ .+- +.++ +.+=+..+|+-|+||.+-
T Consensus 64 lKeLerq~~~L~~~~~~p~vd~~~l~~~l~~l~~~~~~L~~~~-r~G---q~Lr-----ede~L~siRQR~~iPGG~ 131 (250)
T PRK05287 64 LKELERQRQKLQKWRGNPGVDQEALEALLQELEQASAALNAAP-RIG---QSLR-----EDRFLSSIRQRLSIPGGC 131 (250)
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcc-ccc---chhh-----hhHHHHHHHHHhcCCCcc
Confidence 34445555556666655 88999998888888888876654 222 1111 222334477889999763
No 397
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=38.01 E-value=4.4e+02 Score=26.67 Aligned_cols=88 Identities=16% Similarity=0.297 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----HHHH-HHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADND----PAAF-EAMK 155 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~D----p~~i-~~~k 155 (225)
+..-...|+.+...++.++..+...+..++. ++...+..+.+|...+..|+.++.....-+ |... ..+.
T Consensus 13 rd~ya~~lk~e~a~~qqr~~qmseev~~L~e------Ek~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq 86 (617)
T PF15070_consen 13 RDQYAQQLKEESAQWQQRMQQMSEEVRTLKE------EKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQ 86 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHH
Confidence 3444556777777778888888888877765 567777888999999999988887665432 3333 3677
Q ss_pred HHHHHHHHHHHhhhhhHHH
Q 027291 156 NAIEVAHAAANRWTDNIFT 174 (225)
Q Consensus 156 ~~~~~~k~aanrwTDNI~~ 174 (225)
.++..++..++.|+-.+-+
T Consensus 87 ~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 87 AEAEHLRKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788888888888765544
No 398
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=37.92 E-value=1.3e+02 Score=22.33 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=24.8
Q ss_pred cccceeeEEcccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 63 KIGTSVYFWSLPS-CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 63 KiGssN~YWsFps-~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
.|++.+|-..|.. .........+..|.++++.++.++..++..+..+
T Consensus 49 ~i~~v~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 49 TILSVRFRRDFLPEPEKESDSPELKELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred EEEEEEEEEeccCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777732 1222233455555555555555555555554443
No 399
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=37.89 E-value=1.6e+02 Score=21.79 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 027291 90 SDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKD 138 (225)
Q Consensus 90 ~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~ 138 (225)
+.+++++..+.+++.-++.++..| -+.-|-.++..++.++..+..
T Consensus 3 ~~i~eL~~Dl~El~~Ll~~a~R~r----Vk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 3 EQIEELQLDLEELKSLLEQAKRKR----VKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888777766 466777778888888877765
No 400
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=37.64 E-value=80 Score=28.48 Aligned_cols=10 Identities=10% Similarity=0.557 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 027291 129 VELKHIELKD 138 (225)
Q Consensus 129 L~~~~~~l~~ 138 (225)
++.++++|++
T Consensus 96 l~~EN~rLr~ 105 (283)
T TIGR00219 96 LKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 401
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=37.53 E-value=19 Score=29.02 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=28.5
Q ss_pred hhccCCCcchhcHHHHHHHhhhcCccccccccceee
Q 027291 34 KLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVY 69 (225)
Q Consensus 34 K~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~ 69 (225)
.+|...||++.||.-.-+.|..+|.|.+.+ |.+.|
T Consensus 40 elA~~~~VNpnTv~raY~eLE~eG~i~t~r-g~G~f 74 (125)
T COG1725 40 ELAKDLGVNPNTVQRAYQELEREGIVETKR-GKGTF 74 (125)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCEEEec-CeeEE
Confidence 455568999999999999999999998864 44443
No 402
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=37.44 E-value=4.6e+02 Score=28.04 Aligned_cols=96 Identities=21% Similarity=0.260 Sum_probs=52.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 027291 73 LPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREE----SDEREEALEELKAVELKHIE-------LKDEMG 141 (225)
Q Consensus 73 Fps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~----~~eR~~ll~~l~~L~~~~~~-------l~~el~ 141 (225)
.+......++..+..+...+..+...+..++..++....++.. ..+...+-+.+..++.++.. +...+.
T Consensus 774 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 853 (1047)
T PRK10246 774 LDEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLK 853 (1047)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777777777777777777776666654434411 12233334444444444444 444443
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHhhh
Q 027291 142 QYADNDPAAFEAMKNAIEVAHAAANRWT 169 (225)
Q Consensus 142 ~~~~~Dp~~i~~~k~~~~~~k~aanrwT 169 (225)
....+ -..+..+..++..+....++|.
T Consensus 854 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 880 (1047)
T PRK10246 854 QDADN-RQQQQALMQQIAQATQQVEDWG 880 (1047)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 2455566666666666666664
No 403
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=37.39 E-value=53 Score=26.58 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=27.9
Q ss_pred HHHHHHhhhcCcccccccc----ceeeEEc-ccchhhhh
Q 027291 47 KDVVQSLVDDDLVLKDKIG----TSVYFWS-LPSCAGNQ 80 (225)
Q Consensus 47 KdvlQ~LVDDglV~~EKiG----ssN~YWs-Fps~~~~~ 80 (225)
-+|+-+|+.+|+|.+-|=| ..+.+|+ ||=-....
T Consensus 47 ~~~vRALl~~grV~v~~eGRYLl~l~~~~s~~plr~kE~ 85 (132)
T PF14468_consen 47 SEVVRALLQAGRVKVNKEGRYLLDLDLFDSDWPLRKKEA 85 (132)
T ss_pred CHHHHHHHHcCceeeccCceeeeecccccCCCchHHHHH
Confidence 4789999999999999998 5789999 88544433
No 404
>smart00035 CLa CLUSTERIN alpha chain.
Probab=37.38 E-value=1.5e+02 Score=26.10 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhcCCC
Q 027291 147 DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDVGIP 200 (225)
Q Consensus 147 Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~fgIp 200 (225)
||. ...++.++..+..-|++.|.-..-|.+=...++--...-+++++++||--
T Consensus 90 ~P~-q~~Lr~El~eAL~LaE~ftqqYd~lL~~~q~~m~nTs~Lle~ln~QFgWV 142 (216)
T smart00035 90 NPD-QPQLRQELDESLQLAERFTQQYDQLLQSYQKKMLNTSSLLEQLNEQFGWV 142 (216)
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence 673 46889999999999999997766666555666555566788888888753
No 405
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=37.35 E-value=1.4e+02 Score=24.60 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 027291 84 VYRKLESDLQSSKK-RHTELVEQCNALKKGR--EESDEREEALEELKAVELKHIELKDEMGQYADNDP 148 (225)
Q Consensus 84 ~~~~l~~~i~~~~~-~i~~l~~~ie~~k~~r--~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp 148 (225)
-+++|+++++.+.. +..++-+.|..+...- .+..+=.+.-.+...++.++..|+..|....-.||
T Consensus 11 g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~A~iid~ 78 (157)
T PRK01885 11 GYARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLENLKVVDY 78 (157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHccCEEECC
Confidence 45678888888865 6788888888886532 22222233445566677788888888876665444
No 406
>PRK12423 LexA repressor; Provisional
Probab=37.31 E-value=41 Score=28.47 Aligned_cols=55 Identities=22% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhc----cCccchHHHHhhccCCCc-chhcHHHHHHHhhhcCcccccccccee
Q 027291 11 EKRGKILEIFYES----QDFYLLKELEKLGPKKGV-ITQSVKDVVQSLVDDDLVLKDKIGTSV 68 (225)
Q Consensus 11 EKr~ril~~f~e~----~~~ytlKELEK~~pKkGI-~~~~VKdvlQ~LVDDglV~~EKiGssN 68 (225)
.++..||+++.+. .-.=+..||-. .-|+ +.++|.+.|+.|...|+|....=|+..
T Consensus 6 ~~q~~il~~l~~~i~~~g~~Ps~~eia~---~~g~~s~~~v~~~l~~L~~~G~l~~~~~~~~~ 65 (202)
T PRK12423 6 PKRAAILAFIRERIAQAGQPPSLAEIAQ---AFGFASRSVARKHVQALAEAGLIEVVPNQARG 65 (202)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHH---HhCCCChHHHHHHHHHHHHCCCEEecCCCcce
Confidence 7899999998874 11225556543 3585 688999999999999999987665433
No 407
>PRK10698 phage shock protein PspA; Provisional
Probab=37.20 E-value=2.8e+02 Score=24.08 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-HHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDP-AAFEAMKNAIE 159 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp-~~i~~~k~~~~ 159 (225)
++..+......++.++..+..|+.+|++++. .|..|+.+....+.. .++...+..+...++ ..++++...+.
T Consensus 104 l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~------k~~~L~aR~~~A~a~-~~~~~~~~~~~~~~a~~~f~rmE~ki~ 176 (222)
T PRK10698 104 LEHEVTLVDETLARMKKEIGELENKLSETRA------RQQALMLRHQAASSS-RDVRRQLDSGKLDEAMARFESFERRID 176 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-HHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 3444444444555555555555555555544 345555555554443 233333333332222 45555655555
Q ss_pred HHHHHHH
Q 027291 160 VAHAAAN 166 (225)
Q Consensus 160 ~~k~aan 166 (225)
..-..+.
T Consensus 177 ~~Ea~ae 183 (222)
T PRK10698 177 QMEAEAE 183 (222)
T ss_pred HHHHHHh
Confidence 5544444
No 408
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=37.18 E-value=43 Score=20.98 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=23.4
Q ss_pred cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 27 YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 27 ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
|++.|+.++ .||++.+|. ..++.|++...+.+.+.++
T Consensus 1 ~~~~e~a~~---~gv~~~tlr----~~~~~g~l~~~~~~~~~~~ 37 (49)
T cd04761 1 YTIGELAKL---TGVSPSTLR----YYERIGLLSPARTEGGYRL 37 (49)
T ss_pred CcHHHHHHH---HCcCHHHHH----HHHHCCCCCCCcCCCCCEE
Confidence 344555443 477777766 4578899997776654433
No 409
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=37.15 E-value=94 Score=26.17 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
++|. ...+||.++..... =+++||-+.. |++..+|--.|+.|.+.|+|...+
T Consensus 140 ~ls~--~~~~IL~~l~~~g~-~s~~eia~~l---~is~stv~r~L~~Le~~GlI~r~~ 191 (203)
T TIGR01884 140 GLSR--EELKVLEVLKAEGE-KSVKNIAKKL---GKSLSTISRHLRELEKKGLVEQKG 191 (203)
T ss_pred CCCH--HHHHHHHHHHHcCC-cCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEc
Confidence 4554 45689999987543 4677766554 889999999999999999999875
No 410
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=36.85 E-value=2.3e+02 Score=32.67 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR-EESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r-~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
...++.+++..+..+..+.+.+.+|+..|..+...- .+-..|..+-..+.+|..+++.|+.+|+.-.
T Consensus 1078 l~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~ 1145 (1930)
T KOG0161|consen 1078 LSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQG 1145 (1930)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666677777777777777777665532 1223567777888889999999998888774
No 411
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.83 E-value=1.8e+02 Score=22.05 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=37.8
Q ss_pred cCccchHHHHhhcc----C-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHH
Q 027291 24 QDFYLLKELEKLGP----K-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKR 98 (225)
Q Consensus 24 ~~~ytlKELEK~~p----K-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~ 98 (225)
.-+|+..+|+.+.- + .|++...|++++.... +| ... .......+..++..+..+++.++..
T Consensus 36 yR~Y~~~~l~~l~~I~~lr~~G~sL~eI~~~l~~~~-~~--------~~~-----~~~~~~~l~~~~~~l~~~i~~l~~~ 101 (113)
T cd01109 36 IRDFTEEDLEWLEFIKCLRNTGMSIKDIKEYAELRR-EG--------DST-----IPERLELLEEHREELEEQIAELQET 101 (113)
T ss_pred CccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHc-cC--------Ccc-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999987632 2 6777667777665432 11 110 1233444555555555555555555
Q ss_pred HHHHHHHH
Q 027291 99 HTELVEQC 106 (225)
Q Consensus 99 i~~l~~~i 106 (225)
+..+...+
T Consensus 102 ~~~l~~~~ 109 (113)
T cd01109 102 LAYLDYKI 109 (113)
T ss_pred HHHHHHHH
Confidence 55554443
No 412
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=36.60 E-value=2.8e+02 Score=23.99 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 027291 121 EALEELKAVELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAHAAANRWTDNIFTLQ 176 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~ 176 (225)
.+-.+..+|..+...|+.++=.|... --..+......+..++..+..||-=+.-|.
T Consensus 120 ~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR 178 (193)
T PF14662_consen 120 GLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELR 178 (193)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333321 123344444455555555555554444443
No 413
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=36.47 E-value=1.6e+02 Score=21.05 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
.+..+++.|-...+.++..-..|...+..... +|..++.+.+....+++.+-..|..+.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~------ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWRE------ERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34455555555555555555555555555533 677777777777777777666555443
No 414
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.45 E-value=4.1e+02 Score=25.76 Aligned_cols=20 Identities=5% Similarity=-0.026 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027291 88 LESDLQSSKKRHTELVEQCN 107 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie 107 (225)
-...+...+..|+.-+.++.
T Consensus 169 ~~~~l~~~~~~iaaeq~~l~ 188 (420)
T COG4942 169 TLKQLAAVRAEIAAEQAELT 188 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 415
>PRK15396 murein lipoprotein; Provisional
Probab=36.40 E-value=1.8e+02 Score=21.53 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 027291 125 ELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTL 175 (225)
Q Consensus 125 ~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l 175 (225)
++++|+.++..|..+..+++. .+..++.++..+++.|+|-.+-|.-+
T Consensus 26 kvd~LssqV~~L~~kvdql~~----dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSN----DVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777666652 46677777888888887777544433
No 416
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=36.31 E-value=1.2e+02 Score=25.01 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=16.8
Q ss_pred ccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 64 IGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCN 107 (225)
Q Consensus 64 iGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie 107 (225)
||++ |....+- ...++-|+++++++...+..++..|.
T Consensus 82 iGsg--~~ae~~~-----~eAie~l~k~~~~l~~~~~~l~~~l~ 118 (145)
T COG1730 82 IGSG--YYAEKSA-----DEAIEFLKKRIEELEKAIEKLQQALA 118 (145)
T ss_pred cCCc--eeeeecH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665 4455442 23334444444444444444444443
No 417
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=36.24 E-value=3.9e+02 Score=28.93 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 118 EREEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
+|......++++..++..++.++..+.++
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~e~ 470 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLTEL 470 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666555543
No 418
>PRK05638 threonine synthase; Validated
Probab=36.18 E-value=78 Score=30.11 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc-cccceeeEEcccchhhh
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD-KIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E-KiGssN~YWsFps~~~~ 79 (225)
|.....|.+||.++.... -+--||-+..+. .|+..+|--.|+.|.+.|||... +-|- ..||+.-.....
T Consensus 367 ~~~~~~r~~IL~~L~~~~--~~~~el~~~l~~-~~s~~~v~~hL~~Le~~GLV~~~~~~g~-~~~Y~Lt~~g~~ 436 (442)
T PRK05638 367 FTIGGTKLEILKILSERE--MYGYEIWKALGK-PLKYQAVYQHIKELEELGLIEEAYRKGR-RVYYKLTEKGRR 436 (442)
T ss_pred hcccchHHHHHHHHhhCC--ccHHHHHHHHcc-cCCcchHHHHHHHHHHCCCEEEeecCCC-cEEEEECcHHHH
Confidence 556778999999998653 345566666654 57889999999999999999874 5565 557777665443
No 419
>PRK13879 conjugal transfer protein TrbJ; Provisional
Probab=36.09 E-value=3.2e+02 Score=24.48 Aligned_cols=60 Identities=7% Similarity=0.132 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHH
Q 027291 121 EALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDN---IFTLQQWCS 180 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDN---I~~l~~~~~ 180 (225)
...+.++.++.++..++..+..+.....-....+...+..+...++...-. +-.+-+|+.
T Consensus 49 q~~~Qi~Qlq~Qiqqy~nql~Nl~~lp~~~w~~~~~~i~~L~~~a~~iay~~~q~~~~d~~l~ 111 (253)
T PRK13879 49 QTLKQIEQYQTQLQQYENMLQNTMAPAAYIWDQAQSTINGLMNAVDTLNYYKNQLGSLDSYLG 111 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345556677777777777777777766677778887888888887776653 445566665
No 420
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=36.09 E-value=43 Score=29.50 Aligned_cols=51 Identities=27% Similarity=0.436 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK 61 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~ 61 (225)
|..+|.+.+|++++.+++.+ -++.++.--||+.|||.==|..|-+.|++.-
T Consensus 1 m~~~eR~~~Il~~l~~~g~v----~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~R 51 (253)
T COG1349 1 MLKEERHQKILELLKEKGKV----SVEELAELFGVSEMTIRRDLNELEEQGLLLR 51 (253)
T ss_pred CChHHHHHHHHHHHHHcCcE----EHHHHHHHhCCCHHHHHHhHHHHHHCCcEEE
Confidence 45678999999999997777 4455555579999999999999999999864
No 421
>PRK05589 peptide chain release factor 2; Provisional
Probab=35.99 E-value=2.7e+02 Score=25.93 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=35.8
Q ss_pred EEcccchhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 027291 70 FWSLPSCAGNQ--LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELK 137 (225)
Q Consensus 70 YWsFps~~~~~--~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~ 137 (225)
+|.-|...... ....+..+-..+..++....++....+-+.. ++.+.+..+..++..|+..+..++
T Consensus 6 ~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~--~d~e~~~~a~~e~~~l~~~l~~~e 73 (325)
T PRK05589 6 FWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSE--EDDEMKKEIISEVKNIKEEIDRFK 73 (325)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777664432 3333334444445555555555544443322 134456667777777777777765
No 422
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.62 E-value=3.4e+02 Score=24.61 Aligned_cols=80 Identities=9% Similarity=0.125 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHHHHh
Q 027291 91 DLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDP---AAFEAMKNAIEVAHAAANR 167 (225)
Q Consensus 91 ~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp---~~i~~~k~~~~~~k~aanr 167 (225)
.+..+...++.++..+..... +-..|-.+++.-+.+++..++-|+.++..-| +.++++..+++.+-+.-..
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~------de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~ 243 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLAS------DEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVE 243 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443322 3456667777778888888888888888888 4555555665555444333
Q ss_pred hhhhHHHHH
Q 027291 168 WTDNIFTLQ 176 (225)
Q Consensus 168 wTDNI~~l~ 176 (225)
=.=|..-|.
T Consensus 244 kfRNl~yLe 252 (267)
T PF10234_consen 244 KFRNLDYLE 252 (267)
T ss_pred HHHhHHHHH
Confidence 333443333
No 423
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=35.57 E-value=1.7e+02 Score=23.69 Aligned_cols=65 Identities=26% Similarity=0.284 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 027291 85 YRKLESDLQSSKK-RHTELVEQCNALKKGR--EESDEREEALEELKAVELKHIELKDEMGQYADNDPA 149 (225)
Q Consensus 85 ~~~l~~~i~~~~~-~i~~l~~~ie~~k~~r--~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~ 149 (225)
+++|+++++.+.. +.-++-..+..+.... .+..+=...-.+...++.++..|..+|..+.-.+|.
T Consensus 7 ~~~L~~el~~L~~~~r~~~~~~~~~a~~~gDl~Ena~y~aak~~~~~~e~ri~~L~~~L~~a~iv~~~ 74 (151)
T TIGR01462 7 YEKLKEELEYLKTVKRPEISEEIAEAREHGDLSENAEYHAAKEEQGFNEGRIAELEDLLANAQVIDDS 74 (151)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHCCChhhccchHHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 5567778887763 5666666676665422 122222233344666788888888888888766543
No 424
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=35.56 E-value=5e+02 Score=27.67 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=34.8
Q ss_pred hCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCC
Q 027291 145 DNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFP 184 (225)
Q Consensus 145 ~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~ 184 (225)
..||+.++.++++...+..+-..---.+|+|-+-+.++.-
T Consensus 930 qsDPe~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~H 969 (1480)
T COG3096 930 QSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAH 969 (1480)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4599999999999999998888888899999998887643
No 425
>PRK09480 slmA division inhibitor protein; Provisional
Probab=35.49 E-value=97 Score=24.83 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhh
Q 027291 2 SKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAG 78 (225)
Q Consensus 2 m~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~ 78 (225)
||.+.-+.+++|.+|++-..+ +.-+ .| ..-||.||.... -|+-+++|..|||+..
T Consensus 1 ~~~~~~~~~~~r~~Il~aa~~------------l~~~~~G-~~~ti~~Ia~~a---------gvs~gt~Y~~F~~K~~ 56 (194)
T PRK09480 1 MAMKRPKKGERREQILQALAQ------------MLESPPG-ERITTAKLAARV---------GVSEAALYRHFPSKAR 56 (194)
T ss_pred CCCcCCCchhHHHHHHHHHHH------------HHHhcCC-CccCHHHHHHHh---------CCCHhHHHHHCCCHHH
Confidence 344445789999999876432 3333 47 777888876543 3567789999999764
No 426
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=35.44 E-value=19 Score=19.43 Aligned_cols=12 Identities=33% Similarity=0.936 Sum_probs=10.0
Q ss_pred cccccceeeEEc
Q 027291 61 KDKIGTSVYFWS 72 (225)
Q Consensus 61 ~EKiGssN~YWs 72 (225)
.+|.|--||||-
T Consensus 2 ~~k~~CknffWK 13 (18)
T PF03002_consen 2 ERKAGCKNFFWK 13 (18)
T ss_pred cccccccceeec
Confidence 468899999994
No 427
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.43 E-value=4.7e+02 Score=26.21 Aligned_cols=85 Identities=12% Similarity=0.179 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 027291 75 SCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAM 154 (225)
Q Consensus 75 s~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~ 154 (225)
+++...++..-.....+.+.++......+..|+.+.. +...+-.-+++=..+...|+.+|.+..+++-..+-..
T Consensus 342 ad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~------el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~ 415 (546)
T PF07888_consen 342 ADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSR------ELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSEN 415 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 027291 155 KNAIEVAHAAA 165 (225)
Q Consensus 155 k~~~~~~k~aa 165 (225)
++++..++.++
T Consensus 416 ~rel~Elks~l 426 (546)
T PF07888_consen 416 RRELQELKSSL 426 (546)
T ss_pred HHHHHHHHHHH
No 428
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.38 E-value=66 Score=22.57 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNALKKGR 113 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~k~~r 113 (225)
+++|+..|..++.+|..++..+..-...|
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776655543
No 429
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=35.35 E-value=43 Score=27.56 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=26.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHhhcCCCCCcccc
Q 027291 173 FTLQQWCSNNFPQAKEELEQMYKDVGIPEDFDYL 206 (225)
Q Consensus 173 ~~l~~~~~kk~~~~~~~~~~l~~~fgIp~d~dy~ 206 (225)
-+|+.||...|||.+.+ .|.-.|+|.|+--+
T Consensus 87 KSLKRHL~t~~gmTPd~---YR~KW~LP~dYPMv 117 (148)
T COG4957 87 KSLKRHLTTHYGLTPDE---YRAKWGLPPDYPMV 117 (148)
T ss_pred HHHHHHHhcccCCCHHH---HHHhcCCCCCCCcc
Confidence 47899999999999998 67799999996433
No 430
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=35.32 E-value=4.3e+02 Score=27.28 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=54.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 73 LPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKG--------REESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 73 Fps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~--------r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
+-+.....+...++.+.+...++......|+...+..... .+-..+....-.....|+.++..|+..|....
T Consensus 542 ~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 542 KLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555555544444444444444433221 01112333444445667777777777777766
Q ss_pred hCCH--HHHHHHHHHHHHHHHHH------HhhhhhHH
Q 027291 145 DNDP--AAFEAMKNAIEVAHAAA------NRWTDNIF 173 (225)
Q Consensus 145 ~~Dp--~~i~~~k~~~~~~k~aa------nrwTDNI~ 173 (225)
..+. ...+.+.++++.++.-+ .||=|=+-
T Consensus 622 ~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI 658 (698)
T KOG0978|consen 622 KEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVI 658 (698)
T ss_pred cccccccccHHHHHHHHHHHhceeCCCccCchhhHHH
Confidence 5543 44666667777776643 68888553
No 431
>PRK11020 hypothetical protein; Provisional
Probab=35.25 E-value=2.1e+02 Score=22.83 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHh
Q 027291 124 EELKAVELKHIELKDEMGQYAD-NDPAAFEAMKNAIEVAHAAANR 167 (225)
Q Consensus 124 ~~l~~L~~~~~~l~~el~~~~~-~Dp~~i~~~k~~~~~~k~aanr 167 (225)
++++.|..++..++..+..... .|++.|.+...++..+-..+++
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~ 49 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIAR 49 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777776654 4788877776666655554443
No 432
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=35.10 E-value=1.2e+02 Score=23.40 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
....++.+++.+++++++++.+...|..+|+..+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455555556666666666666666555555543
No 433
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=34.90 E-value=2.9e+02 Score=23.66 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Q 027291 84 VYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELK 132 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~ 132 (225)
.+..+...++.++..+..|+.+|+..+. .+..+..+....+..
T Consensus 107 ~~~~~~~~v~~l~~~l~~L~~ki~~~k~------k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 107 ELAAVEETLAKLQEDIAKLQAKLAEARA------RQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433 344555555554443
No 434
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=34.35 E-value=4e+02 Score=25.12 Aligned_cols=75 Identities=25% Similarity=0.253 Sum_probs=43.4
Q ss_pred ceeeEEcccchhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 66 TSVYFWSLPSCAGNQLRNVYRKLES---DLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 66 ssN~YWsFps~~~~~~~~~~~~l~~---~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~ 142 (225)
+.-=||.-|..+.... .++..|.. .++.+.....++.+..+-+. .-.|.+-+..+..++..|...+..+..+|..
T Consensus 23 ~~~~~w~d~~~~~~~~-~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~-~e~D~~~~~~~~~e~~~l~~~l~~~e~~l~~ 100 (359)
T PRK00591 23 SDPEVISDQKRFRKLS-KEYAELEPIVEAYREYKQAQEDLEEAKEMLE-EESDPEMREMAKEELKELEERLEELEEELKI 100 (359)
T ss_pred cCCCcccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334898887655432 33444443 34444444444443333332 1235556777778889999999999887764
No 435
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=34.31 E-value=1e+02 Score=25.60 Aligned_cols=63 Identities=13% Similarity=0.254 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHhhc----cCccchHHHHhhccCCCcc-hhcHHHHHHHhhhcCccccccccceeeEEcc
Q 027291 5 RGLSLEEKRGKILEIFYES----QDFYLLKELEKLGPKKGVI-TQSVKDVVQSLVDDDLVLKDKIGTSVYFWSL 73 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~----~~~ytlKELEK~~pKkGI~-~~~VKdvlQ~LVDDglV~~EKiGssN~YWsF 73 (225)
+||| .+...||+++.+. ...=++.||-+.. |+. .-||-..|+.|...|+|..+- |...-++-+
T Consensus 2 ~~lt--~~q~~iL~~l~~~~~~~~~~~~~~ela~~~---~~~s~~tv~~~l~~L~~~g~i~~~~-~~~~~~~~~ 69 (199)
T TIGR00498 2 KPLT--ARQQEVLDLIRAHIESTGYPPSIREIARAV---GLRSPSAAEEHLKALERKGYIERDP-GKPRAIRIL 69 (199)
T ss_pred CccC--HHHHHHHHHHHHHHHhcCCCCcHHHHHHHh---CCCChHHHHHHHHHHHHCCCEecCC-CCCCeEEeC
Confidence 4566 5677889888853 2335567776554 776 899999999999999999874 554444444
No 436
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=34.28 E-value=3.5e+02 Score=24.41 Aligned_cols=30 Identities=10% Similarity=0.236 Sum_probs=15.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 115 ESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 115 ~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
|++--..+.+++.+|+++++.|+.+|..+.
T Consensus 212 d~~~q~~~~ae~seLq~r~~~l~~~L~~L~ 241 (289)
T COG4985 212 DDEFQQHYVAEKSELQKRLAQLQTELDALR 241 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444344445555555555555555554443
No 437
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.21 E-value=1.1e+02 Score=26.92 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Q 027291 87 KLESDLQSSKKRHTELVEQCNALKKGR-------------EESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEA 153 (225)
Q Consensus 87 ~l~~~i~~~~~~i~~l~~~ie~~k~~r-------------~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~ 153 (225)
++...|+....++..+..+|.+++..| .+...|.+-...+.+|.++++++.. .....|..++-
T Consensus 100 Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~----~~~s~~~klel 175 (222)
T KOG3215|consen 100 EIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEELDD----LNNSTETKLEL 175 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH----HhhhhHHHHHH
Confidence 344556666666666666666665532 2334566666667777766665543 33344555555
Q ss_pred HHHHHHHH
Q 027291 154 MKNAIEVA 161 (225)
Q Consensus 154 ~k~~~~~~ 161 (225)
-+.+.+.+
T Consensus 176 rRkqf~~l 183 (222)
T KOG3215|consen 176 RRKQFKYL 183 (222)
T ss_pred HhhcchHH
Confidence 55544433
No 438
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=34.15 E-value=3.2e+02 Score=28.29 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=74.5
Q ss_pred cCccchHHHHhhccCCCcchhcHHHHHHHhhh---cCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHH-HH
Q 027291 24 QDFYLLKELEKLGPKKGVITQSVKDVVQSLVD---DDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKK-RH 99 (225)
Q Consensus 24 ~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVD---DglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~-~i 99 (225)
.+.=.+|||=.++.++-.-+..-|.+|++|.- -+++..+-.|..+-.|--| .-+++|+++++.+.. ++
T Consensus 518 ad~e~~k~l~~l~~~~~~F~~~dk~~L~sLa~~v~P~l~~~~~~~~~~~~~vT~--------eG~~kLkeEL~~L~~v~r 589 (718)
T PRK06330 518 ASLEYLKEFLLLSSKCPQFSSSDLGVLRSLAEVVQPSLKKGTSEVEEEILWTTS--------ESFTRMKNKLQSLVGKEM 589 (718)
T ss_pred CCHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHhCcchhcCcccCCCCCceeCH--------HHHHHHHHHHHHHHhcch
Confidence 45567888999999944356677888888876 3554444444444444332 345567777777764 56
Q ss_pred HHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 027291 100 TELVEQCNALKKGREES--DEREEALEELKAVELKHIELKDEMGQYADNDP 148 (225)
Q Consensus 100 ~~l~~~ie~~k~~r~~~--~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp 148 (225)
-+.-+.|..++...+-+ .+=.+.-++...++.++..|..+|....-.||
T Consensus 590 pei~k~I~eAR~~GDLsENaEY~aAKe~q~~le~RI~~Le~~L~rA~VVd~ 640 (718)
T PRK06330 590 VENAKEIEDARALGDLRENSEYKFALEKRARLQEEIRVLSEEINRARILTK 640 (718)
T ss_pred HHHHHHHHHHHHCCCcccchhhHHHHHHHHHHHHHHHHHHHHHccCEEECC
Confidence 67777888776643222 22234445677778888888888877765554
No 439
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=34.04 E-value=2.2e+02 Score=27.12 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CHH----HHHHHHHHHHHHHHHHHhhhhhHHH
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADN--DPA----AFEAMKNAIEVAHAAANRWTDNIFT 174 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~--Dp~----~i~~~k~~~~~~k~aanrwTDNI~~ 174 (225)
.+|.+++.+++.|+.+...+.+++.+.... +.+ ...+++++++.+.+.....-+.+..
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888889998888888888774433 211 2233444444444444444444433
No 440
>PRK14145 heat shock protein GrpE; Provisional
Probab=33.98 E-value=3.1e+02 Score=23.67 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 84 VYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
.......++..++.++..++.++...+. .-..+.++++.++++..+=..++..|.
T Consensus 39 ~~~~~~~e~~~l~~~l~~le~e~~el~d------~~lR~~AEfeN~rkR~~kE~e~~~~~a 93 (196)
T PRK14145 39 PQQQTVDEIEELKQKLQQKEVEAQEYLD------IAQRLKAEFENYRKRTEKEKSEMVEYG 93 (196)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555554444321 223445555555555555555555554
No 441
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=33.95 E-value=1e+02 Score=27.31 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
|||++.- =..+|.++|+.....||--|| |...||+--|+.=+|--||+-|.+..+
T Consensus 152 PkGi~~~-Tl~~i~~~~~~~~~~~Taeel---a~~~giSRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 152 PKGLDEL-TLQKVREALKEPDQELTAEEL---AQALGISRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred CCCcCHH-HHHHHHHHHhCcCCccCHHHH---HHHhCccHHHHHHHHHHHHhcCeeeEE
Confidence 5787765 568899999988888887775 455799999999999999999998887
No 442
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=33.80 E-value=92 Score=21.95 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 119 REEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 119 R~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
=..+|.+.++|+.++-.|+.||+-|+.
T Consensus 5 Lr~VL~ERNeLK~~v~~leEEL~~yk~ 31 (60)
T PF11461_consen 5 LREVLQERNELKARVFLLEEELAYYKS 31 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788889999999999999999884
No 443
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=33.33 E-value=5.2e+02 Score=27.00 Aligned_cols=40 Identities=25% Similarity=0.207 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhC-C---HHHHHHHHHHHHHHHHHHH
Q 027291 127 KAVELKHIELKDEMGQYADN-D---PAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 127 ~~L~~~~~~l~~el~~~~~~-D---p~~i~~~k~~~~~~k~aan 166 (225)
..|+..++.|+.|+.+.+.. | .+.|+.+.++|+.-..+|-
T Consensus 669 s~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~ 712 (762)
T PLN03229 669 SDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEAL 712 (762)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 35677888888888777765 2 3788888888887766653
No 444
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.33 E-value=4.8e+02 Score=25.66 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=7.4
Q ss_pred HHHHhhccCccch
Q 027291 17 LEIFYESQDFYLL 29 (225)
Q Consensus 17 l~~f~e~~~~ytl 29 (225)
..+|.++.-+|.|
T Consensus 260 ~rHweet~H~yal 272 (493)
T KOG0804|consen 260 RRHWEETGHCYAL 272 (493)
T ss_pred HHHHHhhcceEEE
Confidence 3455566666655
No 445
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.27 E-value=2.9e+02 Score=24.39 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 115 ESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 115 ~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
+...|...+.++.+.+..+++|+.++...-
T Consensus 63 p~~~Rs~~~~KlR~yksdl~~l~~e~k~~~ 92 (220)
T KOG1666|consen 63 PPNFRSSYLSKLREYKSDLKKLKRELKRTT 92 (220)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444599999999999999999999988765
No 446
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=33.18 E-value=3.4e+02 Score=23.87 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 027291 114 EESDEREEALEELKAVELKHIELKDEMGQYAD-NDPAAFEAMKNAIEVAHAAANRWTDNIFTLQ 176 (225)
Q Consensus 114 ~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~-~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~ 176 (225)
.-...|......+..++..+...+..+.++.. +-|+.++.++.++..+..++..-+-....|.
T Consensus 123 ~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is 186 (234)
T cd07664 123 GVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQIS 186 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999854 4578898988888877666655444433333
No 447
>COG1422 Predicted membrane protein [Function unknown]
Probab=33.04 E-value=1.5e+02 Score=25.82 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHH
Q 027291 124 EELKAVELKHIELKDEMGQYAD-NDPAAFEAMKNAIEVAH 162 (225)
Q Consensus 124 ~~l~~L~~~~~~l~~el~~~~~-~Dp~~i~~~k~~~~~~k 162 (225)
++++++++..++++++..+.++ .|++.+++++++-....
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~ 111 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMM 111 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4577778888888888766554 68888888776554443
No 448
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Probab=32.88 E-value=63 Score=19.36 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=22.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHhhcCCCCC
Q 027291 174 TLQQWCSNNFPQAKEELEQMYKDVGIPED 202 (225)
Q Consensus 174 ~l~~~~~kk~~~~~~~~~~l~~~fgIp~d 202 (225)
.+..|+.....++...+..+...||+|.+
T Consensus 28 ~v~~~~~g~~~~~~~~~~~i~~~~~~~~~ 56 (58)
T cd00093 28 TISRIENGKRNPSLETLEKLAKALGVSLD 56 (58)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCChh
Confidence 44566666668888888889999998865
No 449
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=32.66 E-value=2.2e+02 Score=23.45 Aligned_cols=61 Identities=31% Similarity=0.494 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCcH-------------------HHHHHHHHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGR-------EESD-------------------EREEALEELKAVELKHI 134 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r-------~~~~-------------------eR~~ll~~l~~L~~~~~ 134 (225)
...-+.++.+.+..++.+...|+.+++-. .+| .... .-...+.++..|+.+.+
T Consensus 66 I~~Ll~k~e~~l~kL~Rr~~tL~ak~EL~-~~RL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~L~~kKe 144 (153)
T PF08287_consen 66 INHLLDKAEKHLEKLQRREETLKAKCELQ-QGRLSNYESTDSSSESGESEEERLSTDPVVMKSSDEEELERLKALRQKKE 144 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccCCccccccchhhhhhccchhhcccccHHHHHHHHHHHHHHH
Confidence 44556677788888888888888877722 222 0000 11244666777777777
Q ss_pred HHHHHHHH
Q 027291 135 ELKDEMGQ 142 (225)
Q Consensus 135 ~l~~el~~ 142 (225)
.|+-.++.
T Consensus 145 rL~y~ver 152 (153)
T PF08287_consen 145 RLKYSVER 152 (153)
T ss_pred HHHHHHHh
Confidence 77766553
No 450
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=32.63 E-value=2.9e+02 Score=22.88 Aligned_cols=83 Identities=12% Similarity=0.226 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH---HHHHHHHHHH
Q 027291 87 KLESDLQSSKKRHTELVEQCNALKKGREE-----SDEREEALEELKAVELKHIELKDEMGQYADNDP---AAFEAMKNAI 158 (225)
Q Consensus 87 ~l~~~i~~~~~~i~~l~~~ie~~k~~r~~-----~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp---~~i~~~k~~~ 158 (225)
.+...+......+..+...+......-.+ ...=......+...++.+......|..|-...| ..++.+...+
T Consensus 103 el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~~~~~~~~~~~~~~~~l 182 (204)
T PF04740_consen 103 ELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFDQQSSSIFSEIEELLQAL 182 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45555566666666666655444433211 111234455555666666666566666655545 3444455555
Q ss_pred HHHHHHHHhhh
Q 027291 159 EVAHAAANRWT 169 (225)
Q Consensus 159 ~~~k~aanrwT 169 (225)
......++.|+
T Consensus 183 ~~~l~~l~~~~ 193 (204)
T PF04740_consen 183 QSGLSQLQSMW 193 (204)
T ss_pred HHHHHHHHHhh
Confidence 55555555554
No 451
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=32.61 E-value=2.6e+02 Score=23.93 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.6
Q ss_pred CCcchhcHHHHHHHhhhcCccccc-cccc
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKD-KIGT 66 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~E-KiGs 66 (225)
-||+-.+|.|.|+.|..+|||.+. ..|+
T Consensus 44 lgVSRtpVREAL~~L~~eGlv~~~~~~G~ 72 (254)
T PRK09464 44 FDVSRPSLREAIQRLEAKGLLLRRQGGGT 72 (254)
T ss_pred hCCCHHHHHHHHHHHHHCCCEEEecCcee
Confidence 699999999999999999999977 4444
No 452
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=32.54 E-value=43 Score=24.10 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=27.2
Q ss_pred cchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 41 VITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 41 I~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
+.+|.+||++..|-.||-..+---||...|
T Consensus 4 lp~~~~ke~ik~Le~~Gf~~vrqkGSH~q~ 33 (66)
T COG1724 4 LPRMKAKEVIKALEKDGFQLVRQKGSHRQY 33 (66)
T ss_pred CCcCCHHHHHHHHHhCCcEEEEeecceeEE
Confidence 457999999999999999999999998887
No 453
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.48 E-value=3.5e+02 Score=29.24 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHH
Q 027291 75 SCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGRE-ESDEREEALEELKAVELKHIELKDEMGQYADN---DPAA 150 (225)
Q Consensus 75 s~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~-~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~---Dp~~ 150 (225)
++...+....++....+++.+..++.+|+..+..+....+ -...++..+++...|.-+++.|+.++..-.+. +...
T Consensus 250 ~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~ 329 (1200)
T KOG0964|consen 250 PEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHV 329 (1200)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 027291 151 FEAMKNAIEVAHAAA 165 (225)
Q Consensus 151 i~~~k~~~~~~k~aa 165 (225)
++..+..+..-++.+
T Consensus 330 l~~~~~ki~e~~~EL 344 (1200)
T KOG0964|consen 330 LQKVKDKIEEKKDEL 344 (1200)
T ss_pred HHHHHHHHHHHHHHH
No 454
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=32.46 E-value=1.8e+02 Score=20.46 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELK 137 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~ 137 (225)
..+..++..|+.+.+.++
T Consensus 42 ~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 42 RELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 355555666665555554
No 455
>PRK10870 transcriptional repressor MprA; Provisional
Probab=32.07 E-value=2.3e+02 Score=23.35 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHHhhc-cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccce-eeEEcccchhhhh
Q 027291 5 RGLSLEEKRGKILEIFYES-QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTS-VYFWSLPSCAGNQ 80 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~-~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGss-N~YWsFps~~~~~ 80 (225)
-|||.. .-.+|-.+... ...-+.+||-... |+...+|--+|+.|+..|+|.-...+.- -.+.-...++...
T Consensus 51 ~gLt~~--q~~iL~~L~~~~~~~it~~eLa~~l---~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~ 123 (176)
T PRK10870 51 QGINET--LFMALITLESQENHSIQPSELSCAL---GSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHE 123 (176)
T ss_pred CCCCHH--HHHHHHHHhcCCCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHH
Confidence 356654 44566666543 3345667776554 7889999999999999999998877653 3344445554444
No 456
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=31.96 E-value=65 Score=23.87 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc
Q 027291 3 KKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK 61 (225)
Q Consensus 3 ~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~ 61 (225)
..+.+|.++=++.|.+-|-+..-||| ++-..|+.-++|+-|..-|.+--
T Consensus 14 ~~~~~t~~~L~~~i~~~FG~~arFhT----------CSa~~m~a~~Li~FL~~kgKfi~ 62 (77)
T TIGR03853 14 SGEPYTRESLKAAIEQKFGEDARFHT----------CSAEGMTADELLQFLLKKGKFIE 62 (77)
T ss_pred cCCCcCHHHHHHHHHHHhCCCceEee----------cccccCCHHHHHHHHHHCCCEee
Confidence 45557777777777777777777776 34568999999999999887643
No 457
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=31.81 E-value=4.4e+02 Score=24.79 Aligned_cols=34 Identities=6% Similarity=0.118 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHhh
Q 027291 149 AAFEAMKNAIEVAHAA---ANRWTDNIFTLQQWCSNN 182 (225)
Q Consensus 149 ~~i~~~k~~~~~~k~a---anrwTDNI~~l~~~~~kk 182 (225)
..++.-|+.+-..... +..+++-+..|..++.++
T Consensus 95 k~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r 131 (383)
T PF04100_consen 95 KQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKR 131 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444443333333 445667777777777654
No 458
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=31.78 E-value=2.8e+02 Score=24.36 Aligned_cols=18 Identities=0% Similarity=0.119 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027291 150 AFEAMKNAIEVAHAAANR 167 (225)
Q Consensus 150 ~i~~~k~~~~~~k~aanr 167 (225)
.++++-++-..+.+.++.
T Consensus 194 EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 194 EYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455555555556655554
No 459
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=31.71 E-value=2.6e+02 Score=23.65 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=5.5
Q ss_pred HHhhccC-CCcc
Q 027291 32 LEKLGPK-KGVI 42 (225)
Q Consensus 32 LEK~~pK-kGI~ 42 (225)
|++...+ .||-
T Consensus 46 L~~~~ar~~gIc 57 (189)
T PF10211_consen 46 LQQRQARETGIC 57 (189)
T ss_pred HHHhcCCccccc
Confidence 3444444 6663
No 460
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=31.70 E-value=2.8e+02 Score=23.73 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEM 140 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el 140 (225)
+..+.+++..++.+|..|+.++..... +.-.++=..+..+|.++.++..-.+.+|
T Consensus 107 L~s~~~ei~~L~~kI~~L~~~in~~~k-~~~n~~i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 107 LKSIKKEIEILRLKISSLQKEINKNKK-KDLNEEIESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556655555544322 1111222455556666666666665554
No 461
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=31.58 E-value=2.1e+02 Score=23.22 Aligned_cols=66 Identities=27% Similarity=0.369 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 027291 83 NVYRKLESDLQSSKK-RHTELVEQCNALKKGR---EESDEREEALEELKAVELKHIELKDEMGQYADNDPA 149 (225)
Q Consensus 83 ~~~~~l~~~i~~~~~-~i~~l~~~ie~~k~~r---~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~ 149 (225)
.-+.+|+++++.+.. +..++...+..+.... ++.+-.. --.....+..++..|...|..+.-.+|.
T Consensus 10 ~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~~gdl~En~~y~~-a~~~~~~~~~ri~~l~~~L~~a~ii~~~ 79 (157)
T PRK00226 10 EGYEKLEEELEELKTVERPEIIEAIAEAREHGDLSENAEYHA-AKEEQGFIEGRIRELEDKLSNAEVIDPS 79 (157)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCccccccchH-HHHHHHHHHHHHHHHHHHHHhCeecCcc
Confidence 345667888888765 5666666777765432 2221122 2233556778888888888888876653
No 462
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=31.52 E-value=65 Score=19.13 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=21.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHhhcCCCCC
Q 027291 174 TLQQWCSNNFPQAKEELEQMYKDVGIPED 202 (225)
Q Consensus 174 ~l~~~~~kk~~~~~~~~~~l~~~fgIp~d 202 (225)
.+-.|.......+...+..+...||+|.+
T Consensus 26 ~i~~~~~~~~~~~~~~~~~i~~~~~~~~~ 54 (56)
T smart00530 26 TLSRIENGKRKPSLETLKKLAKALGVSLD 54 (56)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCChh
Confidence 34556666666677778888888888865
No 463
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.51 E-value=7.2e+02 Score=27.14 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHH
Q 027291 91 DLQSSKKRHTELVEQCNALKKGREESD-EREEALEELKAVELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 91 ~i~~~~~~i~~l~~~ie~~k~~r~~~~-eR~~ll~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~aan 166 (225)
.++.+..+..++++++...+..++... .|..++..+.+++.....+...+.++... +-.....+..++......+.
T Consensus 396 ~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~ 475 (1141)
T KOG0018|consen 396 TLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLL 475 (1141)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344444444455555544444433233 34457777777777777776666665532 33344444444444433322
Q ss_pred -------------hhhhhHHHHHHHH
Q 027291 167 -------------RWTDNIFTLQQWC 179 (225)
Q Consensus 167 -------------rwTDNI~~l~~~~ 179 (225)
+-+.+|++|+.|.
T Consensus 476 das~dr~e~sR~~~~~eave~lKr~f 501 (1141)
T KOG0018|consen 476 DASADRHEGSRRSRKQEAVEALKRLF 501 (1141)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHhC
Confidence 3456677766664
No 464
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=31.46 E-value=2.8e+02 Score=26.44 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 027291 118 EREEALEELKAVELKHIELKDEMGQYADNDP-------AAFEAMKNAIEVAHAAANRWTDNIFTLQQW 178 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp-------~~i~~~k~~~~~~k~aanrwTDNI~~l~~~ 178 (225)
+|.++..+++.|+.+...+.+++........ +.+..+++++..+...+....+.+..+...
T Consensus 38 ~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 38 ERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888888888888888776443211 123334444444444444444444443333
No 465
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.38 E-value=2e+02 Score=30.52 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGR-EESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r-~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
...++.+|.+++.+++++...++..+.++.-.+ .+..-.+.-.++++++..+++.+..++..++
T Consensus 928 ~~~e~~kl~kkl~klqk~~~~l~~r~~~~~~~~k~p~~v~~~~~~Kl~~~~~ei~~~~~~~~~l~ 992 (995)
T KOG0432|consen 928 PDSEIQKLAKKLEKLQKQLDKLQARISSSDYQEKAPLEVKEKNKEKLKELEAEIENLKAALANLK 992 (995)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345666666667777777777777775544332 3555666777778888888888888877665
No 466
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.88 E-value=3e+02 Score=26.01 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=8.7
Q ss_pred HHhhhhhHHHHHHHHHh
Q 027291 165 ANRWTDNIFTLQQWCSN 181 (225)
Q Consensus 165 anrwTDNI~~l~~~~~k 181 (225)
+....-||.+|.+|...
T Consensus 262 ~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 262 LQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHhhhHHHHHHHHH
Confidence 33334455566666553
No 467
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=30.76 E-value=6.2e+02 Score=27.39 Aligned_cols=35 Identities=11% Similarity=0.196 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
..+........+.+++..+.+.+..+...++.+..
T Consensus 249 ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~ 283 (1072)
T KOG0979|consen 249 EYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELES 283 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Confidence 33444444455555555555555555555555444
No 468
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=30.69 E-value=44 Score=32.84 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 84 VYRKLESDLQSSKKRHTELVEQCNA 108 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~~~ie~ 108 (225)
++++|++++++++++..++..++++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 6666666666666666655555443
No 469
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=30.63 E-value=29 Score=27.60 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=29.1
Q ss_pred CccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 25 DFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 25 ~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
...+..+| |..-||+...|..+++.|...|+|.+-+
T Consensus 24 ~~~s~~~i---a~~~~is~~~vrk~l~~L~~~Glv~s~~ 59 (141)
T PRK11014 24 RMTSISEV---TEVYGVSRNHMVKIINQLSRAGYVTAVR 59 (141)
T ss_pred CccCHHHH---HHHHCcCHHHHHHHHHHHHhCCEEEEec
Confidence 34454544 4457999999999999999999998876
No 470
>PF07072 DUF1342: Protein of unknown function (DUF1342); InterPro: IPR009777 This family consists of several hypothetical bacterial proteins of around 250 residues in length. Members of this family are often known as YacF after the Escherichia coli protein P36680 from SWISSPROT. The function of this family is unknown.; PDB: 2OEZ_A.
Probab=30.54 E-value=2.4e+02 Score=24.50 Aligned_cols=71 Identities=25% Similarity=0.316 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHH
Q 027291 118 EREEALEELKAVELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMY 194 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~ 194 (225)
=|.+++++| +..+..|..+... |++.++.+-.++..+..+++.-...+- +.++ +.+=+..|+
T Consensus 41 lK~eLlKEL-------eRq~~~L~~~~~~p~vd~~~l~~~l~~l~~~~~~L~~~~gr~g---q~Lr-----ene~L~siR 105 (211)
T PF07072_consen 41 LKSELLKEL-------ERQRQKLNQWRDNPGVDQEALDALLQELDQALQALQQAPGRIG---QHLR-----ENEFLMSIR 105 (211)
T ss_dssp HHHHHHHHH-------HHHHHHHHCTTT-TTS-HHHHHHHHHHHHHHHHHHHH---STT---HHHH-----C-HHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCcchhh---hhhh-----HhHHHHHHH
Confidence 455555544 4445555555554 888888888888888777766553322 1222 223334577
Q ss_pred hhcCCCCCc
Q 027291 195 KDVGIPEDF 203 (225)
Q Consensus 195 ~~fgIp~d~ 203 (225)
+-|+||.+-
T Consensus 106 QR~~iPGG~ 114 (211)
T PF07072_consen 106 QRFSIPGGT 114 (211)
T ss_dssp HHHCSS---
T ss_pred HHccCCCCc
Confidence 788898763
No 471
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.51 E-value=2.3e+02 Score=21.10 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHH
Q 027291 155 KNAIEVAHAAANRWTDNIFTL 175 (225)
Q Consensus 155 k~~~~~~k~aanrwTDNI~~l 175 (225)
..+...+++.-+-|-+-+-.|
T Consensus 52 ~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 52 ERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444454444443
No 472
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=30.48 E-value=39 Score=26.84 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=24.6
Q ss_pred hhcHHHHHHHhhhc-C-ccccccccceeeEEcc
Q 027291 43 TQSVKDVVQSLVDD-D-LVLKDKIGTSVYFWSL 73 (225)
Q Consensus 43 ~~~VKdvlQ~LVDD-g-lV~~EKiGssN~YWsF 73 (225)
.|+++|+++.+-+. | -|.+=-+|.+-+|++|
T Consensus 42 ~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~f 74 (125)
T PF09358_consen 42 DMTLQELIDYFKEKYGLEVTMLSQGVSLLYSSF 74 (125)
T ss_dssp --BHHHHHHHHHHTTS-EEEEEEETTEEEEETT
T ss_pred CCCHHHHHHHHHHHhCceEEEEEeCCEEEEecC
Confidence 59999999999986 3 3555678999999999
No 473
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=30.43 E-value=2.7e+02 Score=21.92 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREE-SDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~-~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
...+...+.+..+++.++-.+..++.-++.-...++. ...+..+...+...+.++..|+.+|..-+
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak 108 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAK 108 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777777777666655444432 23456677777777777777777776544
No 474
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=30.37 E-value=2.4e+02 Score=22.26 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=17.9
Q ss_pred hhCCCCHHHHHHHHhhcCCCCCccccc
Q 027291 181 NNFPQAKEELEQMYKDVGIPEDFDYLE 207 (225)
Q Consensus 181 kk~~~~~~~~~~l~~~fgIp~d~dy~e 207 (225)
+-.|++..+|+.+|++.||.+-|.-|+
T Consensus 80 ~l~~~~e~~vr~~R~~~~i~p~yk~VD 106 (123)
T PF02787_consen 80 RLWGVSEEEVRELRKEHGIVPVYKMVD 106 (123)
T ss_dssp HHHTS-HHHHHHHHHHHT---EEEE--
T ss_pred hccCCCHHHHHHHHHHcCCceeeeeec
Confidence 345889999999999999999987776
No 475
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=30.36 E-value=4.7e+02 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 027291 146 NDPAAFEAMKNAIEVAHAAANRWTDNIF 173 (225)
Q Consensus 146 ~Dp~~i~~~k~~~~~~k~aanrwTDNI~ 173 (225)
.||+..+....++..+...+..+.+++-
T Consensus 72 ~D~e~~~~a~~e~~~l~~~~~~~e~~l~ 99 (360)
T TIGR00019 72 SDPEMREMAKEELEELEEKIEELEEQLK 99 (360)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888887887888777777777666543
No 476
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.27 E-value=2.9e+02 Score=22.12 Aligned_cols=101 Identities=15% Similarity=0.238 Sum_probs=49.0
Q ss_pred cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 27 YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQC 106 (225)
Q Consensus 27 ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~i 106 (225)
|++.|+-+ ..||++-++.=+- +.|+|...+..++ |..|+...... -..+..+.. +--.++++.+-+
T Consensus 1 y~I~e~a~---~~gvs~~TLR~Ye----~~GLl~p~r~~~g--~R~Y~~~~l~~-l~~I~~lr~----~G~sL~eI~~~l 66 (134)
T cd04779 1 YRIGQLAH---LAGVSKRTIDYYT----NLGLLTPERSDSN--YRYYDETALDR-LQLIEHLKG----QRLSLAEIKDQL 66 (134)
T ss_pred CCHHHHHH---HHCcCHHHHHHHH----HCCCCCCccCCCC--CeeECHHHHHH-HHHHHHHHH----CCCCHHHHHHHH
Confidence 44444433 3688888877664 5699999887654 44444333222 222233221 111122333333
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 107 NALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 107 e~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
.....+ ......+.++++.+...++.++..+..+.
T Consensus 67 ~~~~~~---~~~~~~~~~~~~~l~~~i~~Le~~l~~L~ 101 (134)
T cd04779 67 EEVQRS---DKEQREVAQEVQLVCDQIDGLEHRLKQLK 101 (134)
T ss_pred Hhhccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 12233455555666666666665555444
No 477
>PRK10244 anti-RssB factor; Provisional
Probab=30.25 E-value=2.5e+02 Score=21.36 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--------hCCHHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHhhCC
Q 027291 122 ALEELKAVELKHIELKDEMGQYA--------DNDPAAFEAMKNAIEVAHAAANRWTD-----NIFTLQQWCSNNFP 184 (225)
Q Consensus 122 ll~~l~~L~~~~~~l~~el~~~~--------~~Dp~~i~~~k~~~~~~k~aanrwTD-----NI~~l~~~~~kk~~ 184 (225)
+|.++.+.+.+-++|..+.+.++ ..++...+.+-+.++.+..+|-+=.| +...|..|+.+-.-
T Consensus 8 lL~KlA~ke~esKeL~AQVEAlellitAlL~~~~~~~~~~li~~Ie~Ai~~a~~~~~~~~~~D~eLL~~~v~~LL~ 83 (88)
T PRK10244 8 LLAKLAQKEEESKELTAQVEALELLVTAMLRTMGKNGQQELIEQVEGAINAVSKPDDSVPDSDTELLLTYVNKLLR 83 (88)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Confidence 34444444445555555444433 33666688888888888887744443 56788888876543
No 478
>PRK00215 LexA repressor; Validated
Probab=30.22 E-value=1.2e+02 Score=25.30 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhc----cCccchHHHHhhccCCCc-chhcHHHHHHHhhhcCccccccccceeeEE
Q 027291 11 EKRGKILEIFYES----QDFYLLKELEKLGPKKGV-ITQSVKDVVQSLVDDDLVLKDKIGTSVYFW 71 (225)
Q Consensus 11 EKr~ril~~f~e~----~~~ytlKELEK~~pKkGI-~~~~VKdvlQ~LVDDglV~~EKiGssN~YW 71 (225)
+++..||+++.+. ...-+++||-+.. |+ ..-||-.+|+.|+..|+|..+.-+.--+..
T Consensus 4 ~~q~~il~~i~~~~~~~~~~~s~~ela~~~---~~~~~~tv~~~l~~L~~~g~i~~~~~~~r~~~l 66 (205)
T PRK00215 4 KRQQEILDFIRDHIEETGYPPSRREIADAL---GLRSPSAVHEHLKALERKGFIRRDPGRSRAIEV 66 (205)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHh---CCCChHHHHHHHHHHHHCCCEEeCCCCcceEEe
Confidence 4677888888753 4445788876554 77 789999999999999999888766544444
No 479
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=30.18 E-value=1.8e+02 Score=28.62 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=56.9
Q ss_pred CCcchhcHHHHHHHhhhc-Ccc-------ccccc-cceeeEEcccchhhhhHHH------------HHHHHHHHHHHHHH
Q 027291 39 KGVITQSVKDVVQSLVDD-DLV-------LKDKI-GTSVYFWSLPSCAGNQLRN------------VYRKLESDLQSSKK 97 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDD-glV-------~~EKi-GssN~YWsFps~~~~~~~~------------~~~~l~~~i~~~~~ 97 (225)
.|.++-.|-|-+-.|--+ |-. .-+-| .-+-+|-|.|+.++.+--. .-.--+..+++++.
T Consensus 497 ~~~s~t~~~e~~~~lp~~~~s~~~~~~~~~~~t~~sp~p~~~s~~ss~~kant~a~~~~e~k~k~e~~~~~k~s~delr~ 576 (627)
T KOG4348|consen 497 GGHSPTHSPEKILKLPKEEDSANLKPSELKKDTCYSPKPVYLSTPSSASKANTTAFLTLEIKAKVETDDVKKNSLDELRA 576 (627)
T ss_pred CCcCcccCchhhhcCCCCCCccccCCCCCCccccCCCCceeccCCccccccCCcceeeeccccccchhhhhhhhHHHHHH
Confidence 456666666655555431 111 11111 1234788888877654111 11123456777777
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 98 RHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 98 ~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
.|.+|.+-++.++... -.+-.+|+.+|++-+.-.-.|+.|++++.
T Consensus 577 qi~el~~ive~lk~~~--~kel~kl~~dleeek~mr~~lemei~~lk 621 (627)
T KOG4348|consen 577 QIIELLCIVEALKKDH--GKELEKLRKDLEEEKTMRSNLEMEIEKLK 621 (627)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHhhHHHHH
Confidence 7788888787776632 11334666666666666666666665554
No 480
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.15 E-value=3e+02 Score=24.92 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 83 NVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 83 ~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
..+..++..+..+....+.|..+|+.-+.
T Consensus 176 ~~~~~~~~~l~~l~~de~~Le~KIekkk~ 204 (267)
T PF10234_consen 176 QQLQQTQQQLNNLASDEANLEAKIEKKKQ 204 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455555544443
No 481
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=30.13 E-value=2.1e+02 Score=20.47 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHH
Q 027291 124 EELKAVELKHIELKDEMGQYADNDPA 149 (225)
Q Consensus 124 ~~l~~L~~~~~~l~~el~~~~~~Dp~ 149 (225)
.++.+++..+..|...+..+...||.
T Consensus 5 ~~l~~l~~~l~~l~~~~~~~~~~d~~ 30 (70)
T PF10975_consen 5 QRLAELEQQLKQLEDQQEELEQRDPD 30 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45777888888888888888877774
No 482
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.13 E-value=2.4e+02 Score=23.12 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHHHHHHHHHHHHH
Q 027291 86 RKLESDLQSSKKRHTELVEQCNALKKGREESDEREE-ALEELKAVELKHIELKDEM 140 (225)
Q Consensus 86 ~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~-ll~~l~~L~~~~~~l~~el 140 (225)
.....+..+++.++.+++++...... .|+.-|-. +-.+++++.++++++.+++
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~--qDeFAkwaKl~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISA--QDEFAKWAKLNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-T--TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777666665544322 34444433 3333444444444444444
No 483
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=30.11 E-value=1.8e+02 Score=26.73 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAA 164 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~a 164 (225)
.+++.++.+++.|++++.+|+.+.. .+.++|+-+|++
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~-----------~lerEI~ylKql 284 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQAS-----------ELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 4778889999999999988877554 444555555554
No 484
>KOG2587 consensus RNA polymerase III (C) subunit [Transcription]
Probab=30.03 E-value=5.7e+02 Score=25.55 Aligned_cols=53 Identities=8% Similarity=0.268 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccccee
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSV 68 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN 68 (225)
-..||+.++...+ +-.-|-+|+.|= +...-.+++|++|+.+|-|+.-++|-++
T Consensus 398 rAiRl~R~l~~k~-~veekqv~~~Al---m~~Kd~r~~L~~m~~~g~v~lQeVprTa 450 (551)
T KOG2587|consen 398 RAIRLFRLLLQKK-HVEEKQVEDFAL---MPAKDARDMLYKMLEEGYVELQEVPRTA 450 (551)
T ss_pred HHHHHHHHHHhcc-cchHHHHHHhhc---cccccHHHHHHHHHHcCceeeeecCCCC
Confidence 3467888888877 666666666653 3346678999999999999999999888
No 485
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=29.95 E-value=2.2e+02 Score=28.14 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHH
Q 027291 131 LKHIELKDEMGQYADN-DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKE 188 (225)
Q Consensus 131 ~~~~~l~~el~~~~~~-Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~ 188 (225)
+..+.+......+... ||.+.++..+.++.-.+.|.-|-| ++..|+.++.|++.+
T Consensus 621 e~ve~~~~~W~~L~~~Vd~~rf~~V~erL~~Q~ehAkeWRD---vintyFyrr~GiPdE 676 (684)
T COG3661 621 EYVEGMNRTWAGLAPYVDARRFREVSERLKIQREHAKEWRD---VINTYFYRRAGIPDE 676 (684)
T ss_pred HHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCchh
Confidence 4555566666666654 999999999999999999999999 666788888777654
No 486
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=29.92 E-value=7.4e+02 Score=27.44 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
..+-+++..++.+...+++++..+...
T Consensus 300 ~~~~~~~~~le~~~~~l~~~~~~l~~~ 326 (1353)
T TIGR02680 300 RELDARTEALEREADALRTRLEALQGS 326 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444566666666666666666544
No 487
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=29.90 E-value=2.8e+02 Score=21.92 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVA 161 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~ 161 (225)
+.....++++++....++..+...++.... .-..+.|...-.++..+..++......+.. .++..+
T Consensus 42 ~~~~~~~~~~l~~~~~el~~~~~~l~~~~~-~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~-------~l~~~~------ 107 (158)
T PF03938_consen 42 QEKFKALQKELQAKQKELQKLQQKLQSQKA-TLSEEERQKRQQELQQKEQELQQFQQQAQQ-------QLQQEE------ 107 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS-----SSHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH------
Confidence 333334444444444444444433332211 113345555555555555444444433321 111111
Q ss_pred HHHHHhhhhhHHHHHHHHHhhCCC
Q 027291 162 HAAANRWTDNIFTLQQWCSNNFPQ 185 (225)
Q Consensus 162 k~aanrwTDNI~~l~~~~~kk~~~ 185 (225)
....+...+.|.....-+.+..|+
T Consensus 108 ~~~~~~i~~~i~~~v~~~a~~~g~ 131 (158)
T PF03938_consen 108 QELLQPIQKKINKAVEEYAKENGY 131 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 124455556666555555555444
No 488
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.90 E-value=3.8e+02 Score=23.41 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
+..+++++..++.++..++..+...+. .-..+.++++.++++.++=..+...|.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd------~~lR~~AefeN~RKR~~kE~e~~~~~a 109 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKD------RLLRTVAEYDNYRKRTAKEKEGIYSDA 109 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555544444321 223445555555555555555555544
No 489
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=29.86 E-value=2.5e+02 Score=21.39 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027291 118 EREEALEELKAVELKHIELKD 138 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~ 138 (225)
.|...+.....-.........
T Consensus 61 k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 61 KRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444433333333333333
No 490
>PLN02678 seryl-tRNA synthetase
Probab=29.77 E-value=3e+02 Score=26.72 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.+|.+++.+++.|+.+...+.+++....... +..+.+..+.+.+++.+.
T Consensus 40 ~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~-~~~~~l~~~~~~Lk~ei~ 88 (448)
T PLN02678 40 KEWRQRQFELDSLRKEFNKLNKEVAKLKIAK-EDATELIAETKELKKEIT 88 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHH
Confidence 4678888889999999999999887744332 223344444444444433
No 491
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=29.61 E-value=6e+02 Score=27.94 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=70.4
Q ss_pred cCccccccccceeeEEcccch-----hhhhHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhc
Q 027291 56 DDLVLKDKIGTSVYFWSLPSC-----AGNQLRNVYRKLESDLQSSK-------------------KRHTELVEQCNALKK 111 (225)
Q Consensus 56 DglV~~EKiGssN~YWsFps~-----~~~~~~~~~~~l~~~i~~~~-------------------~~i~~l~~~ie~~k~ 111 (225)
|.|=...=.|..-=+=++||+ ....++.++..+.++++.++ .-|..+..+|.....
T Consensus 1038 dALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk 1117 (1439)
T PF12252_consen 1038 DALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEK 1117 (1439)
T ss_pred HHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444445555555566766 33444444555444444443 124444555555444
Q ss_pred C-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHHH-----HHHhhhhhHHHHHH
Q 027291 112 G-REESDEREEALEELKAVELKHIELKDEMGQYAD----NDPAAFEAMKNAIEVAHA-----AANRWTDNIFTLQQ 177 (225)
Q Consensus 112 ~-r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~----~Dp~~i~~~k~~~~~~k~-----aanrwTDNI~~l~~ 177 (225)
. ..+...=...+..+..|++++.-|+.|-..+-. .|=..|+++.++++.+.. -+.-.|--|.+|..
T Consensus 1118 ~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~ 1193 (1439)
T PF12252_consen 1118 AKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEK 1193 (1439)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 3 345566678889999999999999998665543 255667777777665533 23344445555553
No 492
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.53 E-value=4.5e+02 Score=24.22 Aligned_cols=87 Identities=10% Similarity=0.126 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhh
Q 027291 89 ESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRW 168 (225)
Q Consensus 89 ~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrw 168 (225)
+..|+....+.+.+...++.... +-.+|=.+++.-+.+++++++-|++++..-|.-+++...--+.+...-.+|
T Consensus 111 k~aIq~i~~~~q~~~~~Lnnvas------dea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y 184 (338)
T KOG3647|consen 111 KSAIQAIQVRLQSSRAQLNNVAS------DEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRY 184 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433 234555566666677777778888888887866655555445555555555
Q ss_pred hhhHHHHHHHHHhh
Q 027291 169 TDNIFTLQQWCSNN 182 (225)
Q Consensus 169 TDNI~~l~~~~~kk 182 (225)
--|... .+|+++.
T Consensus 185 ~l~f~n-l~yL~~q 197 (338)
T KOG3647|consen 185 FLRFHN-LDYLKSQ 197 (338)
T ss_pred HHHHhh-HHHHHHH
Confidence 554333 3455443
No 493
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=29.45 E-value=3.7e+02 Score=25.56 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=0.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 74 PSCAGNQLRNVYRKLESDLQSSKKRHTEL------------VEQCNALKKGREESDEREEALEELKAVELKHIELKDEMG 141 (225)
Q Consensus 74 ps~~~~~~~~~~~~l~~~i~~~~~~i~~l------------~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~ 141 (225)
++.....+...+..+..++.+++..+.++ +.++..... ..+.....++.+++.++..++.++.
T Consensus 234 ~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 234 KSTILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKE-----QQLAKVKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhh
Q 027291 142 QYAD 145 (225)
Q Consensus 142 ~~~~ 145 (225)
....
T Consensus 309 ~a~~ 312 (457)
T TIGR01000 309 SLKE 312 (457)
T ss_pred HHHH
No 494
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=29.32 E-value=51 Score=22.94 Aligned_cols=50 Identities=16% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccce
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTS 67 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGss 67 (225)
..|.+++...+.+ .+--+|-.-|+.+..|...|..|+.-|.|...-.+++
T Consensus 3 ~~i~~~l~~~~~~----S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 3 QEIRDYLRERGRV----SLAELAREFGISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp HHHHHHHHHS-SE----EHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred HHHHHHHHHcCCc----CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCCC
No 495
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.24 E-value=6.3e+02 Score=27.47 Aligned_cols=116 Identities=24% Similarity=0.169 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESD--EREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKN 156 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~--eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~ 156 (225)
..++..+..+..++.+...++.++...|. ...+|-+.. +=..+-+++.++....+.|=-|-.+++......-+.+.+
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~-e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~ 492 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSIN-ETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSR 492 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhhcCCCCCc
Q 027291 157 AIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKDVGIPEDF 203 (225)
Q Consensus 157 ~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~fgIp~d~ 203 (225)
.-+.+..+.+|=+-|=-.-..-++-.|.... .||+-.++
T Consensus 493 ~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ng--------v~G~v~eL 531 (1200)
T KOG0964|consen 493 AEKNLRATMNRSVANGIDSVRKIKEELKPNG--------VFGTVYEL 531 (1200)
T ss_pred HHHHHHHhccchhhhhhHHHHHHHHHhcccc--------cceehhhh
No 496
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.20 E-value=2.3e+02 Score=20.75 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 027291 92 LQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDN 171 (225)
Q Consensus 92 i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDN 171 (225)
++.++.++...-+.| +=+--++++|+.+...|..+....... .+.+..+...++..-+-|-+-
T Consensus 6 ~ekLE~KiqqAvdTI-------------~LLQmEieELKEknn~l~~e~q~~q~~----reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 6 FEKLEAKVQQAIDTI-------------TLLQMEIEELKEKNNSLSQEVQNAQHQ----REALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 027291 172 IFTLQQ 177 (225)
Q Consensus 172 I~~l~~ 177 (225)
|-+|..
T Consensus 69 lrsLLG 74 (79)
T COG3074 69 LRALLG 74 (79)
T ss_pred HHHHHh
No 497
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=29.11 E-value=5e+02 Score=24.53 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 027291 80 QLRNVYRKLESDLQSSKKRHTEL-----VEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAM 154 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l-----~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~ 154 (225)
.+...++.+.+++..++..+..- ..+..+.......-........++..+..++..+..=+. .+.||+..+..
T Consensus 3 ~~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~--~e~D~~~~~~~ 80 (359)
T PRK00591 3 SMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLE--EESDPEMREMA 80 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH
Q 027291 155 KNAIEVAHAAANRWTDNIFTLQ 176 (225)
Q Consensus 155 k~~~~~~k~aanrwTDNI~~l~ 176 (225)
..++..+...+..+.+.+..+.
T Consensus 81 ~~e~~~l~~~l~~~e~~l~~~l 102 (359)
T PRK00591 81 KEELKELEERLEELEEELKILL 102 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 498
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.09 E-value=3.1e+02 Score=25.03 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCH
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEE-LKAVELKHIELKDEMGQYADNDP 148 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~-l~~L~~~~~~l~~el~~~~~~Dp 148 (225)
....++..+..|++-+....+.|-+-..+|..++...+...+-..+-.+ .++|+.+++++-++++.++..-+
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~sKs 298 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRNSKS 298 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 499
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=29.09 E-value=7.3e+02 Score=27.50 Aligned_cols=102 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHhhC
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDERE-EALEELKAVE--------LKHIELKDEMGQYADN 146 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~-~ll~~l~~L~--------~~~~~l~~el~~~~~~ 146 (225)
.........+..+..++..++..+..++..+..+...+...+.+. .+-.++.+|+ +++.+++.++..+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~ 348 (1353)
T TIGR02680 269 TRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAA 348 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 027291 147 ---DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQ 177 (225)
Q Consensus 147 ---Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~ 177 (225)
.+..+.............+.+-.+.......
T Consensus 349 a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~ 382 (1353)
T TIGR02680 349 AADARQAIREAESRLEEERRRLDEEAGRLDDAER 382 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.97 E-value=6e+02 Score=25.47 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEV 160 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~ 160 (225)
++.+++..+++.+++.+....|+.....++. .=..+-.+|...+++...|..+.+.+.. ..+.+..+...
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~------~v~~l~~eL~~~~ee~e~L~~~~kel~~----~~e~l~~E~~~ 210 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLRE------EVERLEAELEQEEEEMEQLKQQQKELTE----SSEELKEERES 210 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_pred HHHHHHhhhhhHHHHHHHHHh
Q 027291 161 AHAAANRWTDNIFTLQQWCSN 181 (225)
Q Consensus 161 ~k~aanrwTDNI~~l~~~~~k 181 (225)
+...-...+..|..|..-+..
T Consensus 211 L~~q~~e~~~ri~~LEedi~~ 231 (546)
T PF07888_consen 211 LKEQLAEARQRIRELEEDIKT 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Done!