Query 027291
Match_columns 225
No_of_seqs 114 out of 197
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p6r_A Penicillinase repressor 96.7 0.0034 1.2E-07 44.3 6.3 73 1-76 1-74 (82)
2 2fu4_A Ferric uptake regulatio 96.7 0.0007 2.4E-08 48.0 2.5 67 4-70 10-79 (83)
3 1ucr_A Protein DSVD; dissimila 96.5 0.0032 1.1E-07 45.5 4.7 58 11-70 3-63 (78)
4 2o03_A Probable zinc uptake re 95.8 0.0075 2.6E-07 46.6 4.0 72 1-72 1-74 (131)
5 2g9w_A Conserved hypothetical 95.7 0.15 5E-06 39.3 11.0 75 1-77 1-76 (138)
6 2oqg_A Possible transcriptiona 95.6 0.11 3.7E-06 38.0 9.7 61 12-78 22-82 (114)
7 2xub_A DNA-directed RNA polyme 95.3 0.13 4.5E-06 48.7 11.4 151 12-181 361-529 (534)
8 1sd4_A Penicillinase repressor 95.2 0.13 4.5E-06 38.2 9.0 74 1-77 1-76 (126)
9 1q1h_A TFE, transcription fact 95.1 0.022 7.6E-07 42.1 4.4 65 11-78 18-87 (110)
10 2k4b_A Transcriptional regulat 95.1 0.0089 3E-07 44.7 2.0 66 5-73 31-97 (99)
11 2heo_A Z-DNA binding protein 1 94.8 0.037 1.3E-06 38.0 4.6 56 11-73 10-65 (67)
12 3jth_A Transcription activator 94.7 0.07 2.4E-06 38.4 6.0 59 11-74 23-81 (98)
13 2fe3_A Peroxide operon regulat 94.6 0.044 1.5E-06 43.0 5.1 69 4-72 15-85 (145)
14 2htj_A P fimbrial regulatory p 94.3 0.078 2.7E-06 37.1 5.5 58 13-75 2-61 (81)
15 1mzb_A Ferric uptake regulatio 94.0 0.024 8.1E-07 44.0 2.3 65 4-68 11-78 (136)
16 2w57_A Ferric uptake regulatio 93.9 0.02 6.7E-07 45.4 1.7 69 4-72 10-81 (150)
17 3pqk_A Biofilm growth-associat 93.8 0.18 6.1E-06 36.5 6.7 60 11-76 23-82 (102)
18 1ku9_A Hypothetical protein MJ 93.7 1.5 5.3E-05 32.4 12.4 65 5-74 22-87 (152)
19 3mwm_A ZUR, putative metal upt 93.6 0.079 2.7E-06 41.3 4.7 68 4-71 7-76 (139)
20 2xig_A Ferric uptake regulatio 93.6 0.094 3.2E-06 41.4 5.2 70 4-73 20-91 (150)
21 3cuo_A Uncharacterized HTH-typ 93.3 0.28 9.4E-06 34.7 6.8 59 12-74 25-83 (99)
22 2d1h_A ST1889, 109AA long hypo 93.3 0.5 1.7E-05 33.5 8.3 68 5-77 17-89 (109)
23 1okr_A MECI, methicillin resis 93.2 0.4 1.4E-05 35.4 7.9 71 5-78 6-77 (123)
24 1tbx_A ORF F-93, hypothetical 93.0 0.52 1.8E-05 33.6 8.0 74 2-80 1-75 (99)
25 2kko_A Possible transcriptiona 92.9 0.29 1E-05 36.1 6.6 58 13-76 27-84 (108)
26 2lw1_A ABC transporter ATP-bin 92.3 0.88 3E-05 32.9 8.4 64 80-143 19-82 (89)
27 1go4_E MAD1 (mitotic arrest de 92.2 0.72 2.5E-05 34.7 7.9 73 74-146 10-97 (100)
28 3f6o_A Probable transcriptiona 91.7 0.45 1.5E-05 35.5 6.5 63 11-79 18-80 (118)
29 1r1u_A CZRA, repressor protein 91.6 0.63 2.2E-05 33.9 7.1 60 11-76 26-85 (106)
30 1sfx_A Conserved hypothetical 91.4 1.2 4.1E-05 31.3 8.3 53 6-64 17-69 (109)
31 3cuq_B Vacuolar protein-sortin 91.1 0.14 4.7E-06 43.4 3.3 63 8-76 151-213 (218)
32 1y0u_A Arsenical resistance op 91.0 0.3 1E-05 35.0 4.6 47 12-65 32-78 (96)
33 3cuq_A Vacuolar-sorting protei 90.6 0.42 1.4E-05 41.1 5.9 66 4-76 149-215 (234)
34 1u2w_A CADC repressor, cadmium 90.6 0.83 2.8E-05 34.3 7.0 60 11-74 42-101 (122)
35 3na7_A HP0958; flagellar bioge 90.4 6.3 0.00022 33.5 13.3 27 117-143 90-116 (256)
36 3b73_A PHIH1 repressor-like pr 90.3 0.55 1.9E-05 35.6 5.7 71 1-79 3-75 (111)
37 3bpv_A Transcriptional regulat 90.1 4.3 0.00015 29.7 10.8 56 4-65 24-79 (138)
38 1xmk_A Double-stranded RNA-spe 90.1 0.27 9.1E-06 35.3 3.6 67 7-79 7-74 (79)
39 2jsc_A Transcriptional regulat 89.9 0.38 1.3E-05 36.0 4.6 59 11-74 21-79 (118)
40 1ub9_A Hypothetical protein PH 89.7 1.9 6.6E-05 30.1 8.1 62 11-77 16-80 (100)
41 2p4w_A Transcriptional regulat 89.6 5.3 0.00018 32.9 11.8 49 11-64 15-63 (202)
42 3eyy_A Putative iron uptake re 89.2 0.5 1.7E-05 36.9 5.0 68 4-72 12-81 (145)
43 3hnw_A Uncharacterized protein 88.6 3.7 0.00013 32.3 9.6 20 121-140 114-133 (138)
44 3f6v_A Possible transcriptiona 88.4 1.1 3.9E-05 35.2 6.6 64 11-80 58-121 (151)
45 3deu_A Transcriptional regulat 88.4 7.4 0.00025 30.1 12.4 57 3-64 47-103 (166)
46 1oyi_A Double-stranded RNA-bin 88.3 0.74 2.5E-05 33.3 4.9 63 7-76 13-75 (82)
47 1r1t_A Transcriptional repress 87.9 1.5 5.3E-05 33.0 6.8 59 12-75 47-105 (122)
48 4ets_A Ferric uptake regulatio 87.7 0.3 1E-05 39.1 2.8 68 5-72 27-98 (162)
49 2dk8_A DNA-directed RNA polyme 87.5 1.5 5.2E-05 31.6 6.1 65 7-74 10-74 (81)
50 1qbj_A Protein (double-strande 87.1 1.2 4.1E-05 31.8 5.4 62 7-73 5-69 (81)
51 3bj6_A Transcriptional regulat 87.0 7.7 0.00026 28.8 10.5 54 5-64 36-89 (152)
52 3nmd_A CGMP dependent protein 86.6 3.7 0.00013 29.0 7.6 24 122-145 45-68 (72)
53 1u5t_A Appears to BE functiona 85.9 0.69 2.4E-05 39.7 4.2 66 4-76 162-228 (233)
54 3kp7_A Transcriptional regulat 85.6 9.5 0.00032 28.5 10.4 51 6-63 35-85 (151)
55 2gxg_A 146AA long hypothetical 85.5 9 0.00031 28.1 11.1 54 4-64 32-85 (146)
56 2jt1_A PEFI protein; solution 85.4 1 3.6E-05 31.9 4.3 49 12-63 5-58 (77)
57 2qlz_A Transcription factor PF 84.6 17 0.00058 30.6 12.8 56 11-71 12-73 (232)
58 2v4h_A NF-kappa-B essential mo 84.6 2.9 9.9E-05 31.8 6.6 63 81-143 43-109 (110)
59 3g3z_A NMB1585, transcriptiona 84.3 11 0.00036 27.9 11.8 70 4-79 26-97 (145)
60 3na7_A HP0958; flagellar bioge 84.1 18 0.00062 30.5 12.7 20 125-144 91-110 (256)
61 3onj_A T-snare VTI1; helix, HA 84.1 9.7 0.00033 27.8 9.3 64 79-145 30-94 (97)
62 2zkz_A Transcriptional repress 83.8 2.4 8.1E-05 30.5 5.8 67 11-83 27-93 (99)
63 4aik_A Transcriptional regulat 83.5 13 0.00044 28.4 12.1 119 4-141 26-145 (151)
64 3nrv_A Putative transcriptiona 83.4 8.4 0.00029 28.5 9.1 54 6-65 37-90 (148)
65 3hnw_A Uncharacterized protein 83.4 12 0.0004 29.3 10.0 57 87-143 72-129 (138)
66 3r0a_A Putative transcriptiona 83.0 8.1 0.00028 28.8 8.8 54 6-64 23-77 (123)
67 1lj9_A Transcriptional regulat 82.6 12 0.00042 27.4 10.2 56 4-65 24-79 (144)
68 2qc0_A Uncharacterized protein 82.4 1.2 4.1E-05 40.1 4.4 56 14-74 300-355 (373)
69 4hbl_A Transcriptional regulat 82.4 12 0.0004 28.0 9.6 54 5-64 37-90 (149)
70 1qgp_A Protein (double strande 82.2 2.7 9.1E-05 29.4 5.3 55 13-72 16-72 (77)
71 3tgn_A ADC operon repressor AD 82.1 13 0.00044 27.3 11.2 67 4-77 33-101 (146)
72 3bro_A Transcriptional regulat 81.6 11 0.00039 27.4 9.1 56 4-64 29-85 (141)
73 2nnn_A Probable transcriptiona 81.5 13 0.00044 27.0 9.7 53 6-64 35-87 (140)
74 3f3x_A Transcriptional regulat 81.3 9.7 0.00033 28.1 8.6 63 6-75 34-98 (144)
75 2fbh_A Transcriptional regulat 81.2 8.6 0.00029 28.2 8.3 55 5-64 33-87 (146)
76 3boq_A Transcriptional regulat 81.2 9.4 0.00032 28.7 8.6 55 6-65 44-98 (160)
77 2lkp_A Transcriptional regulat 81.0 7.7 0.00026 28.2 7.8 58 12-74 33-90 (119)
78 3fm5_A Transcriptional regulat 80.8 15 0.00052 27.3 9.9 57 4-65 34-90 (150)
79 1u5t_B Defective in vacuolar p 80.6 2.4 8.1E-05 34.4 5.2 65 7-71 95-162 (169)
80 2jee_A YIIU; FTSZ, septum, coi 80.5 14 0.00047 26.6 8.8 24 86-109 9-32 (81)
81 1s3j_A YUSO protein; structura 80.5 9.1 0.00031 28.5 8.3 55 5-65 33-87 (155)
82 1i1g_A Transcriptional regulat 80.4 5.3 0.00018 29.9 6.9 46 11-60 4-49 (141)
83 3oop_A LIN2960 protein; protei 80.1 12 0.00042 27.5 8.9 68 3-76 31-100 (143)
84 1z7u_A Hypothetical protein EF 79.6 15 0.00052 26.6 9.8 48 14-65 25-72 (112)
85 2xvc_A ESCRT-III, SSO0910; cel 79.2 1.1 3.6E-05 30.6 2.1 46 14-62 13-58 (59)
86 2dfs_A Myosin-5A; myosin-V, in 78.3 21 0.00073 36.6 12.5 24 149-172 1023-1046(1080)
87 3viq_B Mating-type switching p 78.3 17 0.00058 26.4 8.6 78 119-202 3-84 (85)
88 1wle_A Seryl-tRNA synthetase; 77.7 11 0.00037 35.6 9.4 69 76-144 70-143 (501)
89 3jw4_A Transcriptional regulat 77.4 19 0.00066 26.6 10.6 55 5-64 37-92 (148)
90 1j5y_A Transcriptional regulat 77.4 2.4 8.2E-05 34.1 4.3 54 7-63 17-71 (187)
91 2dq0_A Seryl-tRNA synthetase; 77.3 9.6 0.00033 35.3 8.9 65 76-143 31-95 (455)
92 2eqb_B RAB guanine nucleotide 77.1 20 0.00068 26.6 9.0 59 76-140 5-63 (97)
93 2esh_A Conserved hypothetical 76.8 20 0.00068 26.4 9.8 75 12-87 14-96 (118)
94 3eco_A MEPR; mutlidrug efflux 76.5 14 0.00049 26.9 8.2 56 4-64 26-82 (139)
95 2p5k_A Arginine repressor; DNA 76.5 5.8 0.0002 25.6 5.3 57 9-70 3-61 (64)
96 2lnb_A Z-DNA-binding protein 1 76.4 5.6 0.00019 28.6 5.4 59 9-74 17-75 (80)
97 3qne_A Seryl-tRNA synthetase, 76.1 13 0.00046 34.8 9.6 61 79-142 36-96 (485)
98 1mkm_A ICLR transcriptional re 75.9 5.2 0.00018 33.4 6.2 54 6-62 3-56 (249)
99 1vcs_A Vesicle transport throu 75.8 8.9 0.0003 28.3 6.7 61 80-145 35-95 (102)
100 3cjn_A Transcriptional regulat 75.3 23 0.0008 26.5 10.2 52 6-63 49-100 (162)
101 3s2w_A Transcriptional regulat 75.3 21 0.00073 26.8 9.1 54 5-64 46-99 (159)
102 2y75_A HTH-type transcriptiona 74.9 15 0.00051 27.2 8.0 64 9-76 7-73 (129)
103 3ech_A MEXR, multidrug resista 74.9 22 0.00076 26.0 10.2 55 5-65 33-87 (142)
104 2a61_A Transcriptional regulat 74.7 22 0.00075 25.9 12.6 54 6-65 30-83 (145)
105 2cyy_A Putative HTH-type trans 74.7 8.2 0.00028 29.5 6.6 64 9-76 5-78 (151)
106 2dbb_A Putative HTH-type trans 74.5 4.5 0.00016 30.9 5.0 55 9-67 7-68 (151)
107 4abx_A DNA repair protein RECN 74.3 20 0.0007 28.5 9.1 62 119-180 89-153 (175)
108 2cfx_A HTH-type transcriptiona 74.3 8.4 0.00029 29.2 6.5 64 9-76 3-76 (144)
109 2fa5_A Transcriptional regulat 74.1 25 0.00085 26.3 10.6 53 6-64 46-98 (162)
110 2f23_A Anti-cleavage anti-GREA 74.1 20 0.00069 28.1 8.9 65 84-148 11-77 (156)
111 3bdd_A Regulatory protein MARR 73.7 21 0.00071 25.9 8.5 53 6-64 28-80 (142)
112 1m1j_B Fibrinogen beta chain; 73.6 40 0.0014 31.5 12.0 100 81-180 98-199 (464)
113 1w7p_D VPS36P, YLR417W; ESCRT- 73.5 4.7 0.00016 38.7 5.8 62 10-72 493-558 (566)
114 2wt7_B Transcription factor MA 72.5 16 0.00056 26.7 7.3 79 41-143 3-81 (90)
115 2qvo_A Uncharacterized protein 72.3 10 0.00034 26.7 6.1 55 12-69 13-70 (95)
116 2pg4_A Uncharacterized protein 72.2 11 0.00037 26.4 6.3 66 12-81 16-82 (95)
117 2ke4_A CDC42-interacting prote 72.2 11 0.00038 27.9 6.4 28 76-103 15-42 (98)
118 2qyw_A Vesicle transport throu 72.2 17 0.00059 26.7 7.5 22 147-168 76-97 (102)
119 2o0y_A Transcriptional regulat 72.1 2.9 0.0001 35.3 3.7 58 5-65 17-74 (260)
120 1ic2_A Tropomyosin alpha chain 72.1 23 0.00077 24.9 9.6 59 81-145 4-62 (81)
121 3v7d_A Suppressor of kinetocho 72.0 2 6.9E-05 34.6 2.5 45 158-207 106-155 (169)
122 1m6e_X S-adenosyl-L-methionnin 71.6 1.6 5.6E-05 39.4 2.0 34 44-77 227-260 (359)
123 2vxz_A Pyrsv_GP04; viral prote 71.6 24 0.00081 28.5 8.6 66 2-74 1-68 (165)
124 2bv6_A MGRA, HTH-type transcri 71.3 15 0.00053 26.8 7.3 65 5-75 33-99 (142)
125 3lss_A Seryl-tRNA synthetase; 70.9 21 0.00072 33.5 9.5 34 78-111 39-72 (484)
126 3ghg_A Fibrinogen alpha chain; 70.6 75 0.0026 30.3 13.7 113 81-197 62-185 (562)
127 2eth_A Transcriptional regulat 70.4 31 0.001 25.7 9.5 53 6-64 41-93 (154)
128 1g6u_A Domain swapped dimer; d 69.9 18 0.00061 22.8 6.7 44 101-144 4-47 (48)
129 2hzt_A Putative HTH-type trans 69.8 9.8 0.00033 27.5 5.7 47 14-64 17-63 (107)
130 2p5v_A Transcriptional regulat 69.8 15 0.0005 28.4 7.0 65 8-76 7-81 (162)
131 3u2r_A Regulatory protein MARR 69.5 34 0.0012 25.9 10.6 69 4-77 41-112 (168)
132 3u59_A Tropomyosin beta chain; 69.3 30 0.001 25.2 11.9 60 81-146 7-66 (101)
133 3vkg_A Dynein heavy chain, cyt 69.2 55 0.0019 37.7 13.7 16 162-177 2083-2098(3245)
134 1fs1_B SKP1, cyclin A/CDK2-ass 68.9 2.3 7.9E-05 33.0 2.1 47 145-203 88-139 (141)
135 2nyx_A Probable transcriptiona 68.2 23 0.00078 27.1 7.9 53 6-64 42-94 (168)
136 2pn6_A ST1022, 150AA long hypo 68.1 12 0.00041 28.3 6.2 54 10-67 2-62 (150)
137 2e1c_A Putative HTH-type trans 68.0 12 0.00042 29.5 6.4 63 9-75 25-97 (171)
138 1r7j_A Conserved hypothetical 67.2 9.8 0.00034 27.4 5.2 33 33-65 24-56 (95)
139 3a7p_A Autophagy protein 16; c 67.2 47 0.0016 26.5 11.0 57 82-144 67-123 (152)
140 2rdp_A Putative transcriptiona 67.1 34 0.0012 25.0 10.2 55 4-64 37-91 (150)
141 2vn2_A DNAD, chromosome replic 66.6 6.4 0.00022 29.7 4.2 54 5-63 28-85 (128)
142 2w25_A Probable transcriptiona 66.4 12 0.00041 28.4 5.8 55 9-67 5-66 (150)
143 3df8_A Possible HXLR family tr 66.1 35 0.0012 24.7 8.8 56 14-75 30-87 (111)
144 1ses_A Seryl-tRNA synthetase; 65.6 20 0.00068 32.8 8.0 62 77-143 29-90 (421)
145 3eqx_A FIC domain containing t 65.6 6.9 0.00024 35.3 4.9 55 15-74 301-355 (373)
146 3k0l_A Repressor protein; heli 64.7 42 0.0014 25.2 9.0 55 4-64 41-95 (162)
147 3cvf_A Homer-3, homer protein 64.3 30 0.001 24.6 7.1 31 82-112 12-42 (79)
148 3u1c_A Tropomyosin alpha-1 cha 64.1 40 0.0014 24.7 11.5 59 82-146 8-66 (101)
149 2ast_A S-phase kinase-associat 64.0 4 0.00014 32.1 2.7 42 158-204 99-145 (159)
150 2v79_A DNA replication protein 64.0 13 0.00043 28.7 5.5 53 6-62 29-84 (135)
151 1jcd_A Major outer membrane li 63.9 28 0.00096 22.8 6.5 42 125-170 5-46 (52)
152 4dzn_A Coiled-coil peptide CC- 63.8 12 0.00042 21.8 4.0 25 86-110 5-29 (33)
153 2g7u_A Transcriptional regulat 63.7 7 0.00024 32.8 4.3 56 4-62 7-62 (257)
154 3jsv_C NF-kappa-B essential mo 63.6 9.1 0.00031 28.3 4.3 66 79-144 19-88 (94)
155 2fbk_A Transcriptional regulat 63.5 48 0.0017 25.4 9.2 56 4-64 64-121 (181)
156 3bja_A Transcriptional regulat 63.0 39 0.0013 24.2 10.3 55 4-64 28-82 (139)
157 2cg4_A Regulatory protein ASNC 61.9 19 0.00064 27.3 6.2 55 9-67 6-67 (152)
158 2efj_A 3,7-dimethylxanthine me 61.8 2.4 8.1E-05 38.7 1.0 33 45-77 240-272 (384)
159 3e6m_A MARR family transcripti 61.8 48 0.0016 24.8 8.6 53 6-64 50-102 (161)
160 3neu_A LIN1836 protein; struct 61.7 19 0.00064 26.9 6.0 28 35-62 43-70 (125)
161 4etp_A Kinesin-like protein KA 61.5 27 0.00094 31.7 8.1 55 85-145 5-59 (403)
162 2e1n_A PEX, period extender; c 61.3 22 0.00076 27.4 6.5 84 3-86 26-116 (138)
163 3u1d_A Uncharacterized protein 61.2 25 0.00086 27.9 6.9 69 11-81 29-105 (151)
164 2ia2_A Putative transcriptiona 61.1 6.3 0.00022 33.3 3.6 56 4-62 14-69 (265)
165 2fbi_A Probable transcriptiona 61.0 43 0.0015 24.1 10.3 53 6-64 33-85 (142)
166 2jee_A YIIU; FTSZ, septum, coi 60.6 43 0.0015 24.0 9.9 31 79-109 9-39 (81)
167 1yyv_A Putative transcriptiona 59.8 13 0.00045 28.1 4.9 59 14-76 38-98 (131)
168 2hgc_A YJCQ protein; SR346, st 59.8 9.8 0.00034 28.4 4.0 44 14-65 8-52 (102)
169 1grj_A GREA protein; transcrip 59.4 42 0.0014 26.4 8.0 66 84-149 10-78 (158)
170 2dql_A PEX protein; circadian 59.2 50 0.0017 24.2 8.3 82 7-88 18-106 (115)
171 2p4v_A Transcription elongatio 59.1 43 0.0015 26.4 8.0 65 84-148 10-77 (158)
172 1z91_A Organic hydroperoxide r 59.0 16 0.00054 26.9 5.2 55 4-64 35-89 (147)
173 3dfg_A Xcrecx, regulatory prot 59.0 4.8 0.00016 31.9 2.3 44 21-64 26-69 (162)
174 2fsw_A PG_0823 protein; alpha- 58.7 18 0.00063 25.9 5.3 58 15-76 29-88 (107)
175 3hsr_A HTH-type transcriptiona 58.7 24 0.00082 25.9 6.2 55 4-64 31-85 (140)
176 2nx4_A Transcriptional regulat 58.5 58 0.002 24.7 10.7 57 1-79 1-57 (194)
177 2xrn_A HTH-type transcriptiona 58.4 21 0.00072 29.5 6.3 54 7-63 2-55 (241)
178 2xdn_A HTH-type transcriptiona 58.2 2.6 8.8E-05 32.9 0.5 58 1-79 1-58 (210)
179 2pi2_A Replication protein A 3 58.0 2.1 7.2E-05 36.9 0.0 49 11-60 207-256 (270)
180 4ham_A LMO2241 protein; struct 57.6 42 0.0014 25.1 7.4 32 35-66 44-76 (134)
181 3tnu_B Keratin, type II cytosk 57.3 60 0.0021 24.5 8.9 33 78-110 38-70 (129)
182 3oja_B Anopheles plasmodium-re 57.2 87 0.003 28.8 11.0 35 77-111 457-491 (597)
183 3viq_A SWI5-dependent recombin 57.1 63 0.0021 24.7 9.9 12 192-203 99-110 (122)
184 1jgs_A Multiple antibiotic res 56.9 51 0.0018 23.6 8.1 55 4-64 29-83 (138)
185 3tnu_A Keratin, type I cytoske 56.7 60 0.0021 24.6 8.3 34 78-111 40-73 (131)
186 3ccy_A Putative TETR-family tr 56.6 62 0.0021 24.5 13.4 58 1-79 4-61 (203)
187 1ylf_A RRF2 family protein; st 56.5 12 0.00039 28.9 4.1 70 14-88 17-87 (149)
188 2xv5_A Lamin-A/C; structural p 56.4 48 0.0016 23.1 8.3 51 89-145 4-54 (74)
189 2pex_A Transcriptional regulat 56.4 37 0.0013 25.0 7.0 55 4-64 42-96 (153)
190 3by6_A Predicted transcription 56.3 23 0.00079 26.5 5.7 33 36-69 42-74 (126)
191 3vkg_A Dynein heavy chain, cyt 56.0 1.5E+02 0.0053 34.2 14.2 90 81-180 2019-2115(3245)
192 2qww_A Transcriptional regulat 55.9 58 0.002 23.9 9.2 50 6-61 38-87 (154)
193 2dq3_A Seryl-tRNA synthetase; 55.7 10 0.00036 34.7 4.3 35 77-111 31-65 (425)
194 1bby_A RAP30; average structur 55.7 16 0.00054 25.4 4.2 61 7-76 4-64 (69)
195 3tqn_A Transcriptional regulat 55.5 5.4 0.00018 29.4 1.9 38 36-75 40-77 (113)
196 3lmm_A Uncharacterized protein 55.4 2.5 8.5E-05 40.5 0.0 61 6-70 511-571 (583)
197 2ras_A Transcriptional regulat 55.2 67 0.0023 24.4 9.6 57 2-79 2-58 (212)
198 3f8m_A GNTR-family protein tra 55.1 6.3 0.00022 33.1 2.5 33 36-70 43-75 (248)
199 2frh_A SARA, staphylococcal ac 55.0 58 0.002 23.7 9.8 55 5-64 33-88 (127)
200 2l5g_B Putative uncharacterize 54.9 30 0.001 21.8 5.0 29 81-109 7-35 (42)
201 2hr3_A Probable transcriptiona 54.7 58 0.002 23.6 10.5 54 6-64 32-85 (147)
202 2p1m_A SKP1-like protein 1A; F 54.7 4.4 0.00015 32.1 1.3 42 158-204 98-144 (160)
203 1r73_A TM1492, 50S ribosomal p 54.6 47 0.0016 22.5 7.1 47 120-166 12-58 (66)
204 2ia0_A Putative HTH-type trans 54.4 33 0.0011 26.9 6.6 62 10-75 16-86 (171)
205 2ek5_A Predicted transcription 54.2 23 0.0008 26.7 5.5 32 36-68 35-66 (129)
206 3oja_A Leucine-rich immune mol 54.1 1.2E+02 0.0042 27.2 12.2 42 68-109 346-393 (487)
207 3cdh_A Transcriptional regulat 54.1 63 0.0021 23.8 8.3 54 5-64 39-92 (155)
208 1uly_A Hypothetical protein PH 54.0 19 0.00066 29.1 5.2 53 9-66 18-73 (192)
209 3o0z_A RHO-associated protein 53.8 87 0.003 25.3 13.8 58 81-144 53-110 (168)
210 2b0l_A GTP-sensing transcripti 53.6 14 0.00048 26.9 3.9 54 8-65 23-79 (102)
211 3i4p_A Transcriptional regulat 53.3 19 0.00064 27.9 4.9 63 10-76 2-74 (162)
212 1i84_S Smooth muscle myosin he 53.1 1.1E+02 0.0038 31.4 11.8 27 81-107 862-888 (1184)
213 3r4k_A Transcriptional regulat 53.1 8.7 0.0003 32.4 3.1 55 6-63 1-55 (260)
214 3on2_A Probable transcriptiona 53.1 21 0.00073 26.6 5.1 59 1-80 1-60 (199)
215 3k2z_A LEXA repressor; winged 53.0 26 0.00089 27.9 5.9 49 11-62 5-57 (196)
216 2yy0_A C-MYC-binding protein; 52.8 25 0.00084 23.1 4.6 20 87-106 23-42 (53)
217 3b5i_A S-adenosyl-L-methionine 52.7 4.7 0.00016 36.5 1.4 33 45-77 246-278 (374)
218 2zjr_V 50S ribosomal protein L 52.7 51 0.0017 22.4 6.4 47 120-166 12-58 (67)
219 3oja_B Anopheles plasmodium-re 52.5 1.4E+02 0.0048 27.4 14.3 22 151-172 553-574 (597)
220 3lay_A Zinc resistance-associa 52.4 91 0.0031 25.2 10.7 21 146-166 110-130 (175)
221 2pms_C Pneumococcal surface pr 52.4 54 0.0018 25.3 7.2 29 85-113 63-91 (125)
222 1c1g_A Tropomyosin; contractIl 52.3 83 0.0028 24.7 14.3 29 152-180 254-282 (284)
223 3v2d_2 50S ribosomal protein L 52.2 41 0.0014 23.3 5.9 47 120-166 19-65 (72)
224 3j21_W 50S ribosomal protein L 52.0 51 0.0018 22.8 6.5 47 120-166 12-59 (72)
225 2ys9_A Homeobox and leucine zi 52.0 11 0.00037 26.5 2.8 41 15-56 20-60 (70)
226 2yy0_A C-MYC-binding protein; 51.1 30 0.001 22.6 4.8 32 76-107 19-50 (53)
227 4a5n_A Uncharacterized HTH-typ 51.0 31 0.0011 26.3 5.7 68 16-88 31-100 (131)
228 3mq0_A Transcriptional repress 50.8 24 0.00081 30.0 5.5 55 6-63 25-79 (275)
229 3crj_A Transcription regulator 50.8 5.9 0.0002 30.8 1.6 58 1-79 4-61 (199)
230 2ke4_A CDC42-interacting prote 50.7 55 0.0019 24.0 6.8 32 147-181 56-87 (98)
231 3kfw_X Uncharacterized protein 50.4 21 0.00073 30.4 5.1 53 13-65 6-59 (247)
232 3cjd_A Transcriptional regulat 50.4 3.8 0.00013 31.9 0.4 58 1-79 2-59 (198)
233 1vq8_V 50S ribosomal protein L 50.2 59 0.002 22.3 6.6 47 120-166 15-62 (71)
234 3e3v_A Regulatory protein RECX 50.1 25 0.00085 28.1 5.3 51 14-64 20-70 (177)
235 3lay_A Zinc resistance-associa 49.9 67 0.0023 26.0 7.8 66 72-137 67-133 (175)
236 2fxo_A Myosin heavy chain, car 49.7 82 0.0028 23.8 10.0 65 82-146 33-98 (129)
237 4etp_A Kinesin-like protein KA 49.4 22 0.00075 32.3 5.3 54 77-130 4-58 (403)
238 3ic7_A Putative transcriptiona 49.0 8 0.00027 29.1 2.0 29 34-62 40-68 (126)
239 3iv1_A Tumor susceptibility ge 48.9 69 0.0024 22.7 7.1 51 88-144 16-66 (78)
240 2jn6_A Protein CGL2762, transp 48.8 13 0.00044 26.1 3.0 52 2-58 1-52 (97)
241 2zfw_A PEX; five alpha-helices 48.7 25 0.00086 27.5 4.9 83 4-86 37-126 (148)
242 3u06_A Protein claret segregat 48.5 62 0.0021 29.5 8.2 54 87-146 7-60 (412)
243 1xma_A Predicted transcription 48.3 77 0.0026 24.3 7.7 70 13-82 43-119 (145)
244 1xn7_A Hypothetical protein YH 48.3 14 0.00047 25.9 3.0 43 14-60 5-47 (78)
245 2zqm_A Prefoldin beta subunit 48.0 48 0.0016 24.0 6.2 44 60-105 55-99 (117)
246 2f2e_A PA1607; transcription f 47.9 62 0.0021 24.6 7.1 58 14-76 27-85 (146)
247 3q8t_A Beclin-1; autophagy, AT 47.9 77 0.0026 23.0 8.9 17 120-136 35-51 (96)
248 2ibd_A Possible transcriptiona 47.1 27 0.00092 26.8 4.9 54 5-79 8-61 (204)
249 2efk_A CDC42-interacting prote 46.6 1.2E+02 0.0043 25.0 12.9 81 118-210 206-287 (301)
250 2x4h_A Hypothetical protein SS 46.4 82 0.0028 22.9 8.2 53 6-63 10-65 (139)
251 1fxk_C Protein (prefoldin); ar 45.9 45 0.0015 25.0 5.9 45 64-108 76-120 (133)
252 3l09_A Putative transcriptiona 45.5 22 0.00075 30.7 4.5 67 13-80 25-95 (266)
253 1i84_S Smooth muscle myosin he 45.0 1E+02 0.0036 31.6 10.1 20 124-143 920-939 (1184)
254 3ra3_A P1C; coiled coil domain 44.5 24 0.00083 19.8 3.0 22 88-109 5-26 (28)
255 2lf0_A Uncharacterized protein 44.4 95 0.0033 23.8 7.3 50 88-138 8-57 (123)
256 2k02_A Ferrous iron transport 43.9 16 0.00054 26.3 2.8 46 14-63 5-50 (87)
257 1hw1_A FADR, fatty acid metabo 43.9 12 0.00042 30.4 2.5 31 39-70 41-71 (239)
258 1v4r_A Transcriptional repress 43.7 6.6 0.00023 28.1 0.7 33 28-63 37-69 (102)
259 2zdi_C Prefoldin subunit alpha 43.2 41 0.0014 26.0 5.4 46 64-109 86-131 (151)
260 3d5l_A Regulatory protein RECX 42.3 30 0.001 28.6 4.7 47 18-64 67-113 (221)
261 2jsp_A Transcriptional regulat 42.1 14 0.00047 26.9 2.2 30 174-206 33-62 (87)
262 2fxo_A Myosin heavy chain, car 41.7 1.1E+02 0.0038 23.0 10.6 17 92-108 15-31 (129)
263 3b81_A Transcriptional regulat 41.5 37 0.0013 25.5 4.9 58 2-80 2-59 (203)
264 2qib_A TETR-family transcripti 41.5 11 0.00039 29.8 1.9 55 4-79 6-60 (231)
265 2w53_A Repressor, SMet; antibi 41.3 3.6 0.00012 32.3 -1.1 58 1-79 1-58 (219)
266 3c1d_A Protein ORAA, regulator 41.0 46 0.0016 25.9 5.4 52 12-63 5-66 (159)
267 1fxk_A Prefoldin; archaeal pro 40.7 79 0.0027 22.4 6.3 53 55-109 45-98 (107)
268 3twe_A Alpha4H; unknown functi 40.4 45 0.0015 18.6 3.6 21 120-140 4-24 (27)
269 2h09_A Transcriptional regulat 40.2 1.1E+02 0.0038 22.7 7.6 43 17-63 46-88 (155)
270 1gd2_E Transcription factor PA 40.0 77 0.0026 21.9 5.8 23 121-143 47-69 (70)
271 1bia_A BIRA bifunctional prote 38.6 32 0.0011 29.8 4.5 54 9-66 3-56 (321)
272 3nqo_A MARR-family transcripti 38.6 1.4E+02 0.0046 23.2 8.8 55 6-65 38-93 (189)
273 3eet_A Putative GNTR-family tr 38.6 16 0.00055 31.1 2.5 30 37-66 61-91 (272)
274 2wv0_A YVOA, HTH-type transcri 38.5 17 0.00057 30.3 2.5 31 39-70 44-74 (243)
275 1z6r_A MLC protein; transcript 38.4 33 0.0011 30.2 4.7 45 13-61 18-62 (406)
276 2co5_A Viral protein F93; vira 38.4 46 0.0016 24.1 4.7 69 13-83 11-83 (99)
277 1ik9_A DNA repair protein XRCC 38.2 66 0.0023 26.8 6.2 20 120-139 156-175 (213)
278 3l9f_A Putative uncharacterize 38.1 1.6E+02 0.0055 23.9 11.9 151 14-171 39-200 (204)
279 2p8t_A Hypothetical protein PH 37.7 27 0.00092 29.0 3.6 36 25-63 29-64 (200)
280 3c7j_A Transcriptional regulat 37.4 1.3E+02 0.0046 24.4 8.1 33 35-67 55-88 (237)
281 1gk6_A Vimentin; intermediate 37.2 87 0.003 20.6 6.1 26 120-145 24-49 (59)
282 2hyt_A TETR-family transcripti 37.0 28 0.00096 26.5 3.5 58 1-79 2-59 (197)
283 3r8s_Y 50S ribosomal protein L 37.0 35 0.0012 23.0 3.5 46 120-165 12-57 (63)
284 3bwg_A Uncharacterized HTH-typ 36.8 18 0.00063 29.9 2.5 34 36-70 36-69 (239)
285 2wui_A MEXZ, transcriptional r 36.8 8.1 0.00028 30.1 0.3 57 1-78 1-57 (210)
286 3dv8_A Transcriptional regulat 36.7 53 0.0018 25.4 5.2 54 7-63 146-203 (220)
287 1rkt_A Protein YFIR; transcrip 36.6 43 0.0015 25.6 4.5 59 1-80 1-60 (205)
288 2c5k_T Syntaxin TLG1, T-snare 36.4 1.2E+02 0.0041 21.9 6.9 52 86-140 39-91 (95)
289 3kz9_A SMCR; transcriptional r 36.1 71 0.0024 23.7 5.7 56 4-80 10-65 (206)
290 3u06_A Protein claret segregat 35.9 41 0.0014 30.7 4.9 54 77-130 4-58 (412)
291 2ve7_A Kinetochore protein HEC 35.9 58 0.002 28.5 5.7 28 118-145 186-213 (315)
292 2a3d_A Protein (de novo three- 35.6 27 0.00092 23.7 2.7 41 125-166 27-68 (73)
293 2v7f_A RPS19, RPS19E SSU ribos 35.6 19 0.00064 28.4 2.3 22 41-62 93-114 (150)
294 1wle_A Seryl-tRNA synthetase; 35.4 2.2E+02 0.0075 26.6 9.9 26 77-102 78-103 (501)
295 3htk_A Structural maintenance 35.3 89 0.003 20.1 8.3 18 123-140 39-56 (60)
296 2dg8_A Putative TETR-family tr 34.8 1.4E+02 0.0048 22.2 9.8 57 1-80 1-57 (193)
297 3lwj_A Putative TETR-family tr 34.4 47 0.0016 24.9 4.4 59 1-80 2-60 (202)
298 2rn7_A IS629 ORFA; helix, all 34.0 63 0.0021 22.8 4.8 55 1-58 1-59 (108)
299 3nmd_A CGMP dependent protein 34.0 92 0.0031 21.8 5.3 39 57-106 11-49 (72)
300 1lq7_A Alpha3W; three helix bu 33.5 1.1E+02 0.0036 20.4 5.5 17 93-109 28-44 (67)
301 3bbo_Z Ribosomal protein L29; 33.4 87 0.003 25.5 5.9 47 120-166 76-122 (173)
302 2fxa_A Protease production reg 33.4 59 0.002 26.0 5.1 56 4-65 43-98 (207)
303 2gfn_A HTH-type transcriptiona 33.2 8.8 0.0003 30.1 -0.1 57 2-80 1-57 (209)
304 3iz5_c 60S ribosomal protein L 33.2 94 0.0032 23.8 5.8 48 120-167 17-64 (124)
305 2c5k_T Syntaxin TLG1, T-snare 33.0 1.4E+02 0.0047 21.6 8.0 51 116-166 35-85 (95)
306 1ci6_A Transcription factor AT 32.6 1.1E+02 0.0037 20.3 5.6 17 121-137 41-57 (63)
307 1iuf_A Centromere ABP1 protein 32.6 29 0.001 26.5 2.9 48 4-52 9-59 (144)
308 2v71_A Nuclear distribution pr 32.5 2.1E+02 0.007 23.5 12.6 20 84-103 25-44 (189)
309 1bm9_A RTP, TER, replication t 32.4 1.6E+02 0.0056 22.3 7.8 64 15-79 22-96 (122)
310 1stz_A Heat-inducible transcri 32.1 48 0.0017 29.2 4.6 58 9-67 15-76 (338)
311 1z05_A Transcriptional regulat 32.0 45 0.0015 29.8 4.5 47 12-62 40-86 (429)
312 1x8y_A Lamin A/C; structural p 31.9 1.3E+02 0.0046 21.1 9.8 49 91-145 29-77 (86)
313 1b4a_A Arginine repressor; hel 31.8 90 0.0031 24.4 5.7 64 10-78 4-69 (149)
314 1kd8_B GABH BLL, GCN4 acid bas 31.6 88 0.003 18.9 5.4 27 80-106 5-31 (36)
315 2di3_A Bacterial regulatory pr 31.5 24 0.00081 28.9 2.3 26 36-61 35-60 (239)
316 2zhg_A Redox-sensitive transcr 31.5 1.8E+02 0.0061 22.4 8.7 47 24-79 9-55 (154)
317 3l7w_A Putative uncharacterize 31.3 1.4E+02 0.0048 21.2 8.9 64 14-80 12-80 (108)
318 4gkw_A Spindle assembly abnorm 31.2 1.9E+02 0.0065 22.7 9.9 25 85-109 13-37 (167)
319 3gp4_A Transcriptional regulat 31.2 1.7E+02 0.0059 22.2 10.3 44 27-78 3-46 (142)
320 3f8b_A Transcriptional regulat 31.1 1.5E+02 0.0052 21.5 7.8 68 15-82 16-90 (116)
321 1zk8_A Transcriptional regulat 31.1 1.2E+02 0.0042 22.2 6.3 55 1-79 1-55 (183)
322 1gk4_A Vimentin; intermediate 31.0 1.4E+02 0.0046 20.9 9.8 25 120-144 50-74 (84)
323 2iu5_A DHAS, YCEG, HTH-type dh 30.9 22 0.00075 27.1 1.9 52 7-79 8-60 (195)
324 4e81_A Chaperone protein DNAK; 30.9 2.2E+02 0.0075 23.3 8.3 23 122-144 144-166 (219)
325 4a17_U RPL35, 60S ribosomal pr 30.8 1E+02 0.0034 23.7 5.6 47 120-166 16-63 (124)
326 1gax_A Valrs, valyl-tRNA synth 30.7 1.1E+02 0.0038 30.5 7.4 77 65-143 784-861 (862)
327 3d5a_X RF1, peptide chain rele 30.6 3E+02 0.01 24.7 10.5 27 147-173 67-93 (354)
328 3gp4_A Transcriptional regulat 30.6 1.6E+02 0.0054 22.4 6.9 30 24-53 38-72 (142)
329 3c2b_A Transcriptional regulat 30.4 10 0.00035 29.4 -0.1 19 1-19 3-23 (221)
330 3sxy_A Transcriptional regulat 30.3 2E+02 0.0069 22.7 8.2 34 34-67 40-74 (218)
331 2zkr_v 60S ribosomal protein L 30.1 1.8E+02 0.0063 22.1 7.1 48 120-167 15-63 (123)
332 3qph_A TRMB, A global transcri 30.0 49 0.0017 29.2 4.3 40 36-76 39-78 (342)
333 3etw_A Adhesin A; antiparallel 29.2 1.9E+02 0.0064 22.0 9.6 60 81-146 7-66 (119)
334 1lrz_A FEMA, factor essential 29.0 1.2E+02 0.0039 27.2 6.7 53 82-141 246-298 (426)
335 2k48_A Nucleoprotein; viral pr 29.0 1.8E+02 0.0062 21.7 9.0 61 82-142 34-100 (107)
336 1yke_B RNA polymerase II holoe 28.9 2.1E+02 0.0071 22.4 9.1 53 119-178 87-139 (151)
337 1a93_B MAX protein, coiled coi 28.8 98 0.0033 18.6 4.5 26 81-106 5-30 (34)
338 3mq7_A Bone marrow stromal ant 28.7 1.9E+02 0.0067 22.0 11.0 35 123-161 70-104 (121)
339 3hta_A EBRA repressor; TETR fa 28.6 18 0.00062 28.4 1.1 56 1-79 20-75 (217)
340 1t2k_D Cyclic-AMP-dependent tr 28.6 1.2E+02 0.0042 19.7 5.6 20 120-139 39-58 (61)
341 1wt6_A Myotonin-protein kinase 28.5 1.6E+02 0.0055 21.0 7.0 6 88-93 19-24 (81)
342 2zvf_A Alanyl-tRNA synthetase; 28.4 1.5E+02 0.0052 22.7 6.6 29 115-143 29-58 (171)
343 3ljl_A Transcriptional regulat 28.4 13 0.00045 27.7 0.2 57 1-78 4-60 (156)
344 1q06_A Transcriptional regulat 28.4 1.7E+02 0.0057 21.9 6.6 69 24-106 36-109 (135)
345 3f0c_A TETR-molecule A, transc 28.3 38 0.0013 25.8 2.9 58 1-79 1-58 (216)
346 3qao_A LMO0526 protein, MERR-l 28.3 2.2E+02 0.0076 23.7 8.0 70 24-113 39-113 (249)
347 3edp_A LIN2111 protein; APC883 28.1 25 0.00085 29.1 1.9 27 36-62 40-66 (236)
348 2e7s_A RAB guanine nucleotide 28.0 1.3E+02 0.0045 23.4 5.9 23 118-140 61-83 (135)
349 3gpv_A Transcriptional regulat 27.7 2E+02 0.0069 21.8 8.5 48 25-80 15-62 (148)
350 1g6u_A Domain swapped dimer; d 27.7 1.1E+02 0.0038 19.1 4.3 21 88-108 25-45 (48)
351 1u00_A HSC66, chaperone protei 27.5 2.5E+02 0.0086 22.9 8.8 7 56-62 90-96 (227)
352 3ryp_A Catabolite gene activat 27.4 97 0.0033 23.6 5.2 29 35-63 173-201 (210)
353 2dq0_A Seryl-tRNA synthetase; 27.3 2.1E+02 0.0071 26.2 8.2 58 117-175 38-95 (455)
354 1use_A VAsp, vasodilator-stimu 27.2 1.2E+02 0.0042 19.2 5.7 27 150-182 16-42 (45)
355 1xd7_A YWNA; structural genomi 26.8 51 0.0017 25.0 3.4 69 14-88 12-80 (145)
356 3mq9_A Bone marrow stromal ant 26.7 2.4E+02 0.0083 25.1 8.5 9 77-85 374-382 (471)
357 4ad8_A DNA repair protein RECN 26.7 3.2E+02 0.011 24.8 9.4 9 46-54 141-149 (517)
358 2p22_C Protein SRN2; endosome, 26.6 2.6E+02 0.0088 22.7 14.6 130 39-197 33-167 (192)
359 2xzm_7 Plectin/S10 domain cont 26.6 57 0.002 26.2 3.7 71 12-84 8-79 (162)
360 4esb_A Transcriptional regulat 26.2 1.9E+02 0.0064 21.0 7.5 67 14-81 12-84 (115)
361 2v71_A Nuclear distribution pr 26.0 2.7E+02 0.0092 22.7 13.1 23 88-110 47-69 (189)
362 1r8d_A Transcription activator 26.0 1.8E+02 0.0062 20.7 6.2 62 25-106 39-105 (109)
363 3sja_C Golgi to ER traffic pro 25.8 1.6E+02 0.0055 20.1 6.9 42 125-166 7-49 (65)
364 2lf0_A Uncharacterized protein 25.7 1.5E+02 0.005 22.8 5.6 45 123-167 9-54 (123)
365 1zhc_A Hypothetical protein HP 25.7 1.2E+02 0.0042 20.9 4.9 45 91-142 18-62 (76)
366 2wt7_A Proto-oncogene protein 25.6 1.5E+02 0.005 19.6 5.6 21 120-140 40-60 (63)
367 1ldd_A APC2WHB, anaphase promo 25.6 33 0.0011 24.0 1.9 22 40-61 44-65 (74)
368 3ra3_B P2F; coiled coil domain 25.3 84 0.0029 17.6 3.1 21 82-102 6-26 (28)
369 2d4y_A HAP1, flagellar HOOK-as 25.3 3E+02 0.01 24.8 8.9 81 95-182 42-122 (463)
370 2lw1_A ABC transporter ATP-bin 25.1 1.8E+02 0.0061 20.3 8.9 49 121-169 26-80 (89)
371 1fxk_A Prefoldin; archaeal pro 25.0 1.8E+02 0.0062 20.4 10.7 32 79-110 11-42 (107)
372 1zbt_A RF-1, peptide chain rel 25.0 1.8E+02 0.0062 26.3 7.1 75 70-144 38-114 (371)
373 2oz6_A Virulence factor regula 24.9 1.2E+02 0.004 23.0 5.3 54 7-63 135-198 (207)
374 1on2_A Transcriptional regulat 24.4 2E+02 0.0069 20.7 8.3 48 13-64 10-57 (142)
375 3a5t_A Transcription factor MA 24.3 6.7 0.00023 29.7 -2.1 13 41-53 13-25 (107)
376 4esf_A PADR-like transcription 24.3 2.1E+02 0.0071 20.8 7.3 68 15-83 15-88 (117)
377 1ses_A Seryl-tRNA synthetase; 24.2 2.9E+02 0.0099 24.9 8.5 56 117-175 35-90 (421)
378 1m1j_C Fibrinogen gamma chain; 24.2 1.1E+02 0.0039 27.9 5.7 91 86-180 44-136 (409)
379 2hoe_A N-acetylglucosamine kin 24.0 39 0.0013 29.7 2.5 44 14-62 23-66 (380)
380 4abm_A Charged multivesicular 23.6 1.9E+02 0.0065 20.1 9.2 66 76-144 6-72 (79)
381 3egq_A TETR family transcripti 23.6 46 0.0016 24.4 2.5 38 34-80 15-52 (170)
382 3e98_A GAF domain of unknown f 23.6 2.1E+02 0.0071 24.0 6.9 29 159-187 109-137 (252)
383 3tul_A Cell invasion protein S 23.5 2.8E+02 0.0095 22.0 8.5 49 125-173 77-131 (158)
384 3la7_A Global nitrogen regulat 23.5 1.3E+02 0.0045 23.8 5.5 54 7-63 163-227 (243)
385 2pnv_A Small conductance calci 23.4 1.4E+02 0.0049 18.6 4.7 22 85-106 18-39 (43)
386 2vz4_A Tipal, HTH-type transcr 23.2 1E+02 0.0035 22.1 4.4 63 24-106 37-104 (108)
387 2efr_A General control protein 23.2 2.8E+02 0.0095 21.9 8.0 27 83-109 63-89 (155)
388 4h22_A Leucine-rich repeat fli 23.2 2.3E+02 0.008 21.0 7.5 25 86-110 26-50 (103)
389 2gqq_A Leucine-responsive regu 23.1 16 0.00053 28.3 -0.3 50 8-61 10-59 (163)
390 3d5a_X RF1, peptide chain rele 23.0 3.2E+02 0.011 24.5 8.3 30 115-144 67-96 (354)
391 2xdj_A Uncharacterized protein 22.8 1.7E+02 0.0059 20.6 5.3 15 89-103 26-40 (83)
392 3tnu_A Keratin, type I cytoske 22.8 2.4E+02 0.0083 21.1 9.8 13 87-99 42-54 (131)
393 3gpv_A Transcriptional regulat 22.8 2.4E+02 0.0083 21.4 6.7 71 24-108 52-127 (148)
394 3qne_A Seryl-tRNA synthetase, 22.7 3.7E+02 0.013 25.0 9.0 56 117-173 40-95 (485)
395 1ik9_A DNA repair protein XRCC 22.7 3.2E+02 0.011 22.5 12.9 30 82-111 138-167 (213)
396 3ljm_A Coil Ser L9C; de novo d 22.6 1.2E+02 0.004 17.3 4.4 21 88-108 6-26 (31)
397 2gau_A Transcriptional regulat 22.5 1.7E+02 0.0057 22.7 5.9 34 27-63 181-214 (232)
398 3u1c_A Tropomyosin alpha-1 cha 22.4 2.2E+02 0.0076 20.5 8.0 17 90-106 44-60 (101)
399 1pb6_A Hypothetical transcript 22.3 29 0.00098 26.4 1.1 54 5-79 12-65 (212)
400 4fi5_A Nucleoprotein; structur 22.3 2.5E+02 0.0087 21.1 8.8 59 85-143 24-88 (113)
401 3tnu_B Keratin, type II cytosk 22.2 2.5E+02 0.0085 20.9 9.8 20 83-102 36-55 (129)
402 1yhn_B RILP, RAB interacting l 22.1 1.3E+02 0.0044 20.5 4.2 28 118-145 4-31 (65)
403 1jnm_A Proto-oncogene C-JUN; B 22.0 1.3E+02 0.0044 19.7 4.3 18 120-137 39-56 (62)
404 3f1b_A TETR-like transcription 22.0 2.4E+02 0.0081 20.7 8.2 55 4-79 7-61 (203)
405 3vlc_E Golgi to ER traffic pro 21.9 1.1E+02 0.0036 22.5 4.1 56 122-177 28-84 (94)
406 2wq1_A General control protein 21.9 1.3E+02 0.0046 17.8 4.7 21 81-101 5-25 (33)
407 3eb7_A Insecticidal delta-endo 21.8 4.9E+02 0.017 24.3 10.6 62 101-162 50-113 (589)
408 3bjb_A Probable transcriptiona 21.7 32 0.0011 26.6 1.3 56 1-78 13-68 (207)
409 1gu4_A CAAT/enhancer binding p 21.7 2E+02 0.0068 20.1 5.4 24 122-145 48-71 (78)
410 3u5c_K 40S ribosomal protein S 21.7 95 0.0033 23.2 3.8 69 12-83 7-78 (105)
411 1r8d_A Transcription activator 21.7 2.2E+02 0.0076 20.2 7.8 99 27-143 3-101 (109)
412 3mov_A Lamin-B1; LMNB1, B-type 21.7 2.3E+02 0.0079 20.4 9.8 26 81-106 10-35 (95)
413 2hyj_A Putative TETR-family tr 21.6 36 0.0012 26.1 1.6 52 7-79 8-59 (200)
414 3t8r_A Staphylococcus aureus C 21.6 67 0.0023 24.4 3.2 61 15-78 15-77 (143)
415 3aqt_A Bacterial regulatory pr 21.6 1E+02 0.0035 24.3 4.4 53 7-80 42-94 (245)
416 2d4y_A HAP1, flagellar HOOK-as 21.6 2.6E+02 0.0087 25.3 7.6 22 122-143 101-122 (463)
417 3kcc_A Catabolite gene activat 21.5 1.5E+02 0.0052 23.8 5.5 54 7-63 188-251 (260)
418 1zbt_A RF-1, peptide chain rel 21.4 4E+02 0.014 24.0 8.7 52 121-172 57-110 (371)
419 1dlc_A Delta-endotoxin CRYIIIA 21.3 5.2E+02 0.018 24.3 10.5 64 99-162 46-114 (584)
420 3mov_A Lamin-B1; LMNB1, B-type 21.2 1.2E+02 0.0041 22.0 4.3 49 91-145 38-86 (95)
421 1m1j_C Fibrinogen gamma chain; 21.1 4.7E+02 0.016 23.7 11.2 10 122-131 89-98 (409)
422 2ocy_A RAB guanine nucleotide 21.0 3.1E+02 0.011 21.7 7.6 71 76-146 72-144 (154)
423 3cve_A Homer protein homolog 1 21.0 2.1E+02 0.0073 19.8 9.4 32 81-112 5-36 (72)
424 3e6c_C CPRK, cyclic nucleotide 20.8 1.5E+02 0.0051 23.5 5.3 54 7-63 147-211 (250)
425 3b02_A Transcriptional regulat 20.8 70 0.0024 24.4 3.2 54 7-63 110-173 (195)
426 1ji6_A Pesticidial crystal pro 20.8 5.4E+02 0.018 24.3 10.0 62 100-161 45-111 (589)
427 3ghg_A Fibrinogen alpha chain; 20.7 2.5E+02 0.0086 26.7 7.3 21 93-113 60-80 (562)
428 4fxi_A MRNA interferase RELE; 20.7 62 0.0021 23.2 2.6 44 29-75 12-57 (95)
429 3k69_A Putative transcription 20.6 98 0.0033 24.1 4.0 60 15-77 16-76 (162)
430 3q0w_A HTH-type transcriptiona 20.6 3E+02 0.01 21.2 12.5 51 9-80 42-92 (236)
431 1kpt_A KP4 toxin; killer toxin 20.6 37 0.0013 25.4 1.4 28 40-70 60-87 (105)
432 3u59_A Tropomyosin beta chain; 20.4 2.1E+02 0.0073 20.5 5.6 11 45-55 6-16 (101)
433 3viq_B Mating-type switching p 20.2 2.5E+02 0.0084 20.1 9.5 61 86-146 4-70 (85)
434 3iox_A AGI/II, PA; alpha helix 20.2 5.4E+02 0.019 24.1 12.5 31 81-111 7-37 (497)
435 2zcw_A TTHA1359, transcription 20.1 1.7E+02 0.0057 22.2 5.3 54 7-63 117-180 (202)
436 2zqm_A Prefoldin beta subunit 20.1 2.4E+02 0.0083 20.0 13.1 28 80-107 10-37 (117)
437 3dkw_A DNR protein; CRP-FNR, H 20.0 1.4E+02 0.0046 23.0 4.8 29 35-63 184-212 (227)
No 1
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=96.74 E-value=0.0034 Score=44.26 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=61.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccch
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSC 76 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~ 76 (225)
|.+..|||..+ ..||.++.. ...-+..||-..... .|+..-+|--+|..|++.|+|...+.|-..+|....+.
T Consensus 1 m~~~~~lt~~e--~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~~~~~ 74 (82)
T 1p6r_A 1 MKKIPQISDAE--LEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDE 74 (82)
T ss_dssp CCCCCCCCHHH--HHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESCSS
T ss_pred CCccCCCCHHH--HHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCCEEEEEeecCH
Confidence 44446899876 568999988 557899999998877 78999999999999999999999999998888765543
No 2
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=96.73 E-value=0.0007 Score=47.96 Aligned_cols=67 Identities=22% Similarity=0.226 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcc-CccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 4 KRGLSLEEKRGKILEIFYESQ-DFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~-~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
.+|+-....|..||++|.+.. ...+..||-..+.+ .||+..||=-.|+.|++.|+|.....+....+
T Consensus 10 ~~g~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~ 79 (83)
T 2fu4_A 10 KAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSV 79 (83)
T ss_dssp HTTCCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEE
T ss_pred HcCCCcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceE
Confidence 457777788999999999887 89999999988865 58999999999999999999998887544433
No 3
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=96.53 E-value=0.0032 Score=45.48 Aligned_cols=58 Identities=17% Similarity=0.414 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhc---cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 11 EKRGKILEIFYES---QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 11 EKr~ril~~f~e~---~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
+=++.||+|+... ++=|-++||.|+.|..+ +..||-++..||.+|.+.-==.||+.+|
T Consensus 3 e~K~~Ile~l~~k~~~KskfYf~D~~k~~P~~k--~r~vKK~~~~LV~Eg~leywSSGSTTmy 63 (78)
T 1ucr_A 3 EAKQKVVDFLNSKSGSKSKFYFNDFTDLFPDMK--QREVKKILTALVNDEVLEYWSSGSTTMY 63 (78)
T ss_dssp HHHHHHHHHHSSHHHHSSCEEHHHHHHHCTTSC--HHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHccccC--HHHHHHHHHHHHhcCceEEEecCCeEEE
Confidence 4568999999984 77888999999999854 8999999999999999986666666554
No 4
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=95.81 E-value=0.0075 Score=46.65 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=60.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccceeeEEc
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWS 72 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWs 72 (225)
|.+.+|+-.-.-|..||++|.++....|..||-..+.+ .+|+..||=-.|+.|++.|+|+.-..|.+..+..
T Consensus 1 ~l~~~g~r~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~ 74 (131)
T 2o03_A 1 MASAAGVRSTRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYR 74 (131)
T ss_dssp -CTTTHHHHHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEE
T ss_pred ChhhccCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 55667777888899999999999999999999888755 5899999999999999999999888876544443
No 5
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=95.68 E-value=0.15 Score=39.25 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=59.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCA 77 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~ 77 (225)
|.+.+|||..| ..||.++......-+.+||-..... .++..-+|--+|+.|++.|+|...+.|-...|....+..
T Consensus 1 m~~~~~lt~~e--~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~ 76 (138)
T 2g9w_A 1 MAKLTRLGDLE--RAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRD 76 (138)
T ss_dssp --CGGGCCHHH--HHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHH
T ss_pred CCccccCCHHH--HHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHH
Confidence 44457899876 5788999886667899999999887 789999999999999999999999999988888766544
No 6
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.64 E-value=0.11 Score=38.03 Aligned_cols=61 Identities=18% Similarity=0.098 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhh
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAG 78 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~ 78 (225)
-+.+||.++ .. ...+..||-+.. |++..+|--.|..|.+.|+|...+.|...+| ++.....
T Consensus 22 ~r~~IL~~L-~~-~~~~~~ela~~l---~is~~tv~~~l~~L~~~gli~~~~~gr~~~y-~l~~~~~ 82 (114)
T 2oqg_A 22 TRWEILTEL-GR-ADQSASSLATRL---PVSRQAIAKHLNALQACGLVESVKVGREIRY-RALGAEL 82 (114)
T ss_dssp HHHHHHHHH-HH-SCBCHHHHHHHS---SSCHHHHHHHHHHHHHTTSEEEEEETTEEEE-EECSHHH
T ss_pred HHHHHHHHH-Hc-CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeeEEecCCEEEE-EechHHH
Confidence 467788888 33 346888886655 8999999999999999999999888885554 4444433
No 7
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=95.30 E-value=0.13 Score=48.69 Aligned_cols=151 Identities=14% Similarity=0.255 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc--------cceeeEEcccchhhhhHHH
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI--------GTSVYFWSLPSCAGNQLRN 83 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi--------GssN~YWsFps~~~~~~~~ 83 (225)
+-.||+.++...+. .+-| .++..++|....|+.+|-.|.++|+|..-++ |.+.|+|.+-.+.. ...
T Consensus 361 ~a~RI~r~L~~~~~-l~d~---~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~~~~~~--~~~ 434 (534)
T 2xub_A 361 RCARIFRLVLQKKH-IEQK---QVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSA--ARM 434 (534)
T ss_dssp HHHHHHHHHHHC----CHH---HHHHHHCSCHHHHHHHHHHHHHTTCC---------------------CCHHHH--HHH
T ss_pred HHHHHHHHHHHcCC-CCHH---HHHHHhCCCHHHHHHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEEcHHHH--HHH
Confidence 45678888887764 3333 3344479999999999999999999999988 45678888875433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhCCHHHHHH
Q 027291 84 VYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVE----------LKHIELKDEMGQYADNDPAAFEA 153 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~----------~~~~~l~~el~~~~~~Dp~~i~~ 153 (225)
-++.+.+-+..+..++.- ++. +...+|++.+... ...+++.++-+-+...+-+.+.+
T Consensus 435 l~~~~~k~l~nl~~Rl~~-------E~~------~~~~lL~k~eR~d~~~~~vk~~~~~~~~~~e~~e~lt~~e~~~l~~ 501 (534)
T 2xub_A 435 LLHRCYKSIANLIERRQF-------ETK------ENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLET 501 (534)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHH------HTHHHHHHHHHHHHHHHCCC--------CHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHH------hhHHHHHHHHhhhhHHHHhhccccchhhhHHHHHhcCHHHHHHHHH
Confidence 233333333333222222 111 1112222111111 01111111111122223356777
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 027291 154 MKNAIEVAHAAANRWTDNIFTLQQWCSN 181 (225)
Q Consensus 154 ~k~~~~~~k~aanrwTDNI~~l~~~~~k 181 (225)
.+.....+-.+..|--|-|+++.+|+.-
T Consensus 502 ~~~~~~~L~~~~~~lD~~i~vl~dy~~~ 529 (534)
T 2xub_A 502 LKRNVNKLDASEIQVDETIFLLESYIEC 529 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHH
Confidence 7888888999999999999999999763
No 8
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=95.18 E-value=0.13 Score=38.23 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=60.5
Q ss_pred CCC-CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchh
Q 027291 1 MSK-KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCA 77 (225)
Q Consensus 1 mm~-~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~ 77 (225)
||+ ..|||..| -.+|.++.+.. .-+.+||-..... .|+.+-||--+|+.|++.|+|...+.|-...|....+..
T Consensus 1 m~~~~~~Lt~~q--~~vL~~L~~~~-~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~~~~~~~~~~~ 76 (126)
T 1sd4_A 1 MTNKQVEISMAE--WDVMNIIWDKK-SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKED 76 (126)
T ss_dssp ----CCCCCHHH--HHHHHHHHHSS-SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCHH
T ss_pred CCCCCCCCCHHH--HHHHHHHHhcC-CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCCeEEEEEecCHH
Confidence 554 56899876 57888888865 5699999999987 799999999999999999999999999988888766543
No 9
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=95.13 E-value=0.022 Score=42.06 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc-----cccceeeEEcccchhh
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD-----KIGTSVYFWSLPSCAG 78 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E-----KiGssN~YWsFps~~~ 78 (225)
+.+.+|+..+....+..+..|| |..-||+..+|-+.|+.|.++|+|... .-|...+||.+.....
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eL---a~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i 87 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEI---ANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQI 87 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHH---HHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHH
Confidence 3677899988777766777764 445799999999999999999999987 5677788898876543
No 10
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=95.05 E-value=0.0089 Score=44.69 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSL 73 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsF 73 (225)
.|||..| ..||.++.+ ...-+.+||=..+.. .++..-+|--+|..|++.|+|..++.|-..+|++.
T Consensus 31 ~~LT~~e--~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y~p~ 97 (99)
T 2k4b_A 31 FNVSNAE--LIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGRKFVYRPL 97 (99)
T ss_dssp CCCCCSC--SHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETTEEEEECC
T ss_pred CCCCHHH--HHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCCEEEEEEe
Confidence 3566554 578888887 446799999999887 78999999999999999999999999999999763
No 11
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=94.83 E-value=0.037 Score=38.05 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSL 73 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsF 73 (225)
+.+.+||++|.+...+.+..||= ...||+..+|--.|+.|.++|+|...+-| ||+.
T Consensus 10 ~~~~~IL~~L~~~~~~~s~~eLA---~~lglsr~tv~~~l~~L~~~G~I~~~~~G----~y~l 65 (67)
T 2heo_A 10 NLEQKILQVLSDDGGPVAIFQLV---KKCQVPKKTLNQVLYRLKKEDRVSSPSPK----YWSI 65 (67)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHH---HHHCSCHHHHHHHHHHHHHTTSEEEEETT----EEEE
T ss_pred HHHHHHHHHHHHcCCCcCHHHHH---HHHCcCHHHHHHHHHHHHHCCcEecCCCc----eEee
Confidence 56788999998876788888854 44699999999999999999999876655 6654
No 12
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=94.67 E-value=0.07 Score=38.36 Aligned_cols=59 Identities=22% Similarity=0.188 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
.-|.+||.++.+ ...+..||-... ||+..+|--.|+.|.+.|+|..++-|...+|.-=|
T Consensus 23 ~~r~~Il~~L~~--~~~~~~ela~~l---~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (98)
T 3jth_A 23 ERRLQILCMLHN--QELSVGELCAKL---QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKS 81 (98)
T ss_dssp HHHHHHHHHTTT--SCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECC
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECH
Confidence 346778888876 567888887666 89999999999999999999999999877665433
No 13
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=94.61 E-value=0.044 Score=43.01 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=58.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccceeeEEc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWS 72 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWs 72 (225)
.+|+-.-..|..||++|.++....|-.||-..+.+ .+|+..||=-.|..|++.|+|+.-..|.+..++.
T Consensus 15 ~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 85 (145)
T 2fe3_A 15 ETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFD 85 (145)
T ss_dssp HTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEE
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEE
Confidence 35666667799999999999999999999888866 5889999999999999999999888876544443
No 14
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.35 E-value=0.078 Score=37.15 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=44.1
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc--cceeeEEcccc
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI--GTSVYFWSLPS 75 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi--GssN~YWsFps 75 (225)
+.+||.++.... ..+..||-+.. ||+..+|...|+.|+++|+|..... |.. .||.+..
T Consensus 2 r~~Il~~L~~~~-~~s~~eLa~~l---gvs~~tv~r~L~~L~~~GlI~~~~~~~gr~-~~y~l~~ 61 (81)
T 2htj_A 2 KNEILEFLNRHN-GGKTAEIAEAL---AVTDYQARYYLLLLEKAGMVQRSPLRRGMA-TYWFLKG 61 (81)
T ss_dssp HHHHHHHHHHSC-CCCHHHHHHHH---TSCHHHHHHHHHHHHHHTSEEEECCSSSSS-CEEEESS
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEeccCCCCc-EEEEECh
Confidence 467999998764 46888876655 8999999999999999999985433 433 4665543
No 15
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=94.01 E-value=0.024 Score=44.05 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcc-CccchHHHHhhccC--CCcchhcHHHHHHHhhhcCcccccccccee
Q 027291 4 KRGLSLEEKRGKILEIFYESQ-DFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTSV 68 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~-~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGssN 68 (225)
.+|+-.-.-|..||++|.++. ...|..||-..+.+ .+|+..||=-.|..|++.|+|+.-..|.+.
T Consensus 11 ~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~ 78 (136)
T 1mzb_A 11 KAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGH 78 (136)
T ss_dssp HTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSS
T ss_pred HCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCc
Confidence 356656667899999999988 89999999888865 578999999999999999999988875543
No 16
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=93.94 E-value=0.02 Score=45.45 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcc-CccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccceeeEEc
Q 027291 4 KRGLSLEEKRGKILEIFYESQ-DFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWS 72 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~-~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWs 72 (225)
.+|+-.-.-|..||++|.++. ...|..||-..+.+ .+|+..||=-.|+.|++.|+|+.-..|.+..++.
T Consensus 10 ~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 81 (150)
T 2w57_A 10 DAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFE 81 (150)
T ss_dssp HTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEE
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 456666667899999999988 89999999888865 5789999999999999999999888765544443
No 17
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=93.82 E-value=0.18 Score=36.50 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccch
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSC 76 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~ 76 (225)
.-|.+||.++.+ ...+..||-... ||+..+|-..|..|.+.|+|...+-|...+| +....
T Consensus 23 ~~r~~Il~~L~~--~~~~~~ela~~l---~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y-~l~~~ 82 (102)
T 3pqk_A 23 PVRLMLVCTLVE--GEFSVGELEQQI---GIGQPTLSQQLGVLRESGIVETRRNIKQIFY-RLTEA 82 (102)
T ss_dssp HHHHHHHHHHHT--CCBCHHHHHHHH---TCCTTHHHHHHHHHHHTTSEEEECSSSCCEE-EECSS
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE-EECcH
Confidence 456788888865 347888887665 8999999999999999999999999986555 44443
No 18
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=93.72 E-value=1.5 Score=32.44 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc-ccceeeEEccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK-IGTSVYFWSLP 74 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK-iGssN~YWsFp 74 (225)
-|+|..+ .++|.++.-....-++.||-+.. |++..+|-.+|+.|++.|+|...+ -|....|+..+
T Consensus 22 ~gl~~~~--~~il~~L~~~~~~~t~~ela~~l---~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 22 HGLNKSV--GAVYAILYLSDKPLTISDIMEEL---KISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp TTCCHHH--HHHHHHHHHCSSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred cCCChhH--HHHHHHHHHcCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 4677654 56777775344568999887665 889999999999999999999876 34444455544
No 19
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=93.60 E-value=0.079 Score=41.34 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=54.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccceeeEE
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFW 71 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YW 71 (225)
+.|+-.---|..||++|.++....|..||-..+.+ .+|+..||=-.|+.|++.|+|+.-..|.+..++
T Consensus 7 ~~g~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y 76 (139)
T 3mwm_A 7 PVKGRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVY 76 (139)
T ss_dssp ---CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEE
T ss_pred CCCCccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEE
Confidence 45777777899999999999999999999766644 689999999999999999999887775544333
No 20
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=93.59 E-value=0.094 Score=41.42 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccceeeEEcc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSL 73 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsF 73 (225)
.+|+-.-.-|..||++|.++....|..||-..+.+ .+|...||=-.|..|++.|+|+.-..|.+..++.+
T Consensus 20 ~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 20 KNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp HCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 35666777889999999999999999999888765 57889999999999999999998777665444433
No 21
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=93.29 E-value=0.28 Score=34.66 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
-+.+||.++.. +...+..||-+.. ||+..+|--.|+.|++.|+|...+-|...+|.--+
T Consensus 25 ~~~~il~~l~~-~~~~s~~ela~~l---~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~ 83 (99)
T 3cuo_A 25 KRLLILCMLSG-SPGTSAGELTRIT---GLSASATSQHLARMRDEGLIDSQRDAQRILYSIKN 83 (99)
T ss_dssp HHHHHHHHHTT-CCSEEHHHHHHHH---CCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECC
T ss_pred HHHHHHHHHHh-CCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEECh
Confidence 46778888865 4467888887666 89999999999999999999999988876665554
No 22
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.27 E-value=0.5 Score=33.49 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc-----ceeeEEcccchh
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG-----TSVYFWSLPSCA 77 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG-----ssN~YWsFps~~ 77 (225)
.|+|... .++|..+.......+..||-... ||+..+|-.+|+.|++.|+|.....+ --.+++++....
T Consensus 17 ~~l~~~~--~~~l~~l~~~~~~~t~~ela~~l---~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~ 89 (109)
T 2d1h_A 17 YKITDTD--VAVLLKMVEIEKPITSEELADIF---KLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNI 89 (109)
T ss_dssp HTCCHHH--HHHHHHHHHHCSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTH
T ss_pred hcCCHHH--HHHHHHHHHcCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHH
Confidence 4777763 34444444445668899887654 89999999999999999999987653 324556665533
No 23
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=93.20 E-value=0.4 Score=35.36 Aligned_cols=71 Identities=11% Similarity=0.183 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhh
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAG 78 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~ 78 (225)
.|+|..+ ..||.++... ..-+..||-..... .+++..+|--+|..|++.|+|...+.|-...|.+......
T Consensus 6 ~~lt~~~--~~vL~~l~~~-~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~ 77 (123)
T 1okr_A 6 YEISSAE--WEVMNIIWMK-KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESD 77 (123)
T ss_dssp CCCCHHH--HHHHHHHHHH-SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHH
T ss_pred ccCCHHH--HHHHHHHHhC-CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHH
Confidence 4788765 5688888874 56799999988876 7799999999999999999999988887777777665543
No 24
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=92.96 E-value=0.52 Score=33.62 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCccchHHHHhh-ccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 2 SKKRGLSLEEKRGKILEIFYESQDFYLLKELEKL-GPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 2 m~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~-~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
|++-|||..+ -.||.++... .-.+..||-+. |..-||+..+|--+|+.|++.|+|.....+ -..+.+. .+....
T Consensus 1 l~~~~lt~~q--~~iL~~l~~~-~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~-r~~~~~L-T~~G~~ 75 (99)
T 1tbx_A 1 MKSTPFFYPE--AIVLAYLYDN-EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER-GEKRLYL-TEKGKL 75 (99)
T ss_dssp --CCSSBCHH--HHHHHHHTTC-TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEE-CHHHHH
T ss_pred CCCCCCCHHH--HHHHHHHHHc-CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC-CceEEEE-CHHHHH
Confidence 3455777665 4678888765 45688998444 455899999999999999999999988776 3344444 444433
No 25
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=92.87 E-value=0.29 Score=36.07 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=44.9
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccch
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSC 76 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~ 76 (225)
|.+||.++.. ...+..||-... ||+..+|--.|..|.+.|+|..++-|...+| +....
T Consensus 27 r~~IL~~L~~--~~~s~~eLa~~l---gis~stvs~~L~~L~~~GlV~~~~~gr~~~y-~l~~~ 84 (108)
T 2kko_A 27 RLQILDLLAQ--GERAVEAIATAT---GMNLTTASANLQALKSGGLVEARREGTRQYY-RIAGE 84 (108)
T ss_dssp THHHHHHHTT--CCEEHHHHHHHH---TCCHHHHHHHHHHHHHHTSEEEEEETTEEEE-EESCH
T ss_pred HHHHHHHHHc--CCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE-EEChH
Confidence 4577887764 445888866554 8999999999999999999999998886655 44443
No 26
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=92.29 E-value=0.88 Score=32.94 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
..++.++.|..+|+.++.++..|+..+..-.--..+...=..++.++.+++.++..+......+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888888876543211234444678888888888888887776544
No 27
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=92.20 E-value=0.72 Score=34.70 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=54.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--------------CCcHHHHHHHHHHHHHHHHHHHHHH
Q 027291 74 PSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKK-GR--------------EESDEREEALEELKAVELKHIELKD 138 (225)
Q Consensus 74 ps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~-~r--------------~~~~eR~~ll~~l~~L~~~~~~l~~ 138 (225)
.+.....++.+++.|..+...++.++..|+.+++.... |- +.+.-+...-+.++.|+.+++.|+.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999999998877432 21 1123456667889999999999998
Q ss_pred HHHHHhhC
Q 027291 139 EMGQYADN 146 (225)
Q Consensus 139 el~~~~~~ 146 (225)
.+.++.+.
T Consensus 90 ~v~~lEeg 97 (100)
T 1go4_E 90 LLRAMERG 97 (100)
T ss_dssp HHTTCC--
T ss_pred HHHHHhcc
Confidence 88877653
No 28
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=91.70 E-value=0.45 Score=35.51 Aligned_cols=63 Identities=16% Similarity=0.075 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
.-|.+||.++.. ...+..||-.. -||+..+|--.|..|.+.|+|..++.|...+| +.......
T Consensus 18 ~~R~~Il~~L~~--~~~~~~eLa~~---l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y-~l~~~~~~ 80 (118)
T 3f6o_A 18 PTRRAVLGRLSR--GPATVSELAKP---FDMALPSFMKHIHFLEDSGWIRTHKQGRVRTC-AIEKEPFT 80 (118)
T ss_dssp HHHHHHHHHHHT--CCEEHHHHHTT---CCSCHHHHHHHHHHHHHTTSEEEEEETTEEEE-EECSHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH---hCcCHHHHHHHHHHHHHCCCeEEEecCCEEEE-EECHHHHH
Confidence 457789999884 34578886544 59999999999999999999999999976665 44444333
No 29
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=91.60 E-value=0.63 Score=33.91 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccch
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSC 76 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~ 76 (225)
..|.+||.++.. ...+..||-... ||+..+|--.|+.|.+.|+|...+.|...+| +....
T Consensus 26 ~~r~~IL~~L~~--~~~~~~ela~~l---~is~stvs~~L~~L~~~Glv~~~~~gr~~~y-~l~~~ 85 (106)
T 1r1u_A 26 YNRIRIMELLSV--SEASVGHISHQL---NLSQSNVSHQLKLLKSVHLVKAKRQGQSMIY-SLDDI 85 (106)
T ss_dssp HHHHHHHHHHHH--CCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEETTEEEE-EESSH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE-EEChH
Confidence 356788888873 346888875554 8999999999999999999999999875544 44443
No 30
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.39 E-value=1.2 Score=31.32 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
|+|.. +.+||.++.... ..+..||-+.. |++..+|-.+|..|++.|+|.....
T Consensus 17 ~l~~~--~~~il~~l~~~~-~~s~~ela~~l---~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 17 SFKPS--DVRIYSLLLERG-GMRVSEIAREL---DLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CCCHH--HHHHHHHHHHHC-CBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHH--HHHHHHHHHHcC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEEee
Confidence 56543 567888887644 46888886655 8999999999999999999998765
No 31
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=91.06 E-value=0.14 Score=43.44 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccch
Q 027291 8 SLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSC 76 (225)
Q Consensus 8 S~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~ 76 (225)
+.+.=..+|+++.... .+-|.-+|-.. -|++.--.+++|..++.+|+++.|--+.+ .|| |||-
T Consensus 151 ~~~~~~~~il~~~~~~-g~vt~~~la~~---l~ws~~~a~e~L~~~e~~G~l~~D~~~eg-~~y-~pn~ 213 (218)
T 3cuq_B 151 KEEEMVASALETVSEK-GSLTSEEFAKL---VGMSVLLAKERLLLAEKMGHLCRDDSVEG-LRF-YPNL 213 (218)
T ss_dssp CGGGGHHHHHHHHHHT-SCBCHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEEESSSC-EEE-EECG
T ss_pred chHHHHHHHHHHHHHC-CCcCHHHHHHH---hCCCHHHHHHHHHHHHHcCCEEEECCCCc-eEE-ehhh
Confidence 3334457788888754 45566665544 48999999999999999999999986666 666 7763
No 32
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=90.96 E-value=0.3 Score=34.99 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
-+.+||.++ . ...+..||-+.. ||+..+|--.|+.|.+.|+|...+ |
T Consensus 32 ~r~~Il~~L-~--~~~~~~eLa~~l---~is~~tv~~~L~~L~~~Glv~~~~-g 78 (96)
T 1y0u_A 32 VRRKILRML-D--KGRSEEEIMQTL---SLSKKQLDYHLKVLEAGFCIERVG-E 78 (96)
T ss_dssp HHHHHHHHH-H--TTCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEET-T
T ss_pred HHHHHHHHH-c--CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEC-C
Confidence 466788888 3 447888876554 899999999999999999999888 7
No 33
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=90.60 E-value=0.42 Score=41.09 Aligned_cols=66 Identities=17% Similarity=0.345 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc-ccceeeEEcccch
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK-IGTSVYFWSLPSC 76 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK-iGssN~YWsFps~ 76 (225)
|..+|.+..+ +|++.. ...|.|.-+|... -|+..--.|++|..|+.+|++..|- .+--..|| ||+-
T Consensus 149 p~el~~D~~~--vLela~-~~g~vt~~~L~~~---l~W~~~Ra~~~L~~l~~~GllwvD~q~~ge~~Yw-~P~l 215 (234)
T 3cuq_A 149 PAELNMDHTV--VLQLAE-KNGYVTVSEIKAS---LKWETERARQVLEHLLKEGLAWLDLQAPGEAHYW-LPAL 215 (234)
T ss_dssp CCCCCHHHHH--HHHHHT-TTSEECHHHHHHH---HTCCHHHHHHHHHHHHHHTSCEEESSSSSSCEEE-CTTS
T ss_pred CCccchHHHH--HHHHHH-hcCcCcHHHHHHH---hCCCHHHHHHHHHHHHhCCCEEEeCCCCCcceee-cchh
Confidence 5567777654 777665 5678888888754 5889999999999999999999995 32234699 8863
No 34
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=90.55 E-value=0.83 Score=34.30 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
.-|.+||.++.... ..+..||-... ||+..+|--.|..|.+.|+|...+-|...+|.--+
T Consensus 42 ~~rl~IL~~L~~~~-~~s~~eLa~~l---~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~ 101 (122)
T 1u2w_A 42 ENRAKITYALCQDE-ELCVCDIANIL---GVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGD 101 (122)
T ss_dssp HHHHHHHHHHHHSS-CEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEC----CCEEEESC
T ss_pred HHHHHHHHHHHHCC-CcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECH
Confidence 35668888887543 46888876665 89999999999999999999999999766665554
No 35
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.41 E-value=6.3 Score=33.47 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
.+..++..++..++.++..+..++..+
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENL 116 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655555555554443
No 36
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=90.26 E-value=0.55 Score=35.61 Aligned_cols=71 Identities=23% Similarity=0.241 Sum_probs=51.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCC--CcchhcHHHHHHHhhhcCccccccccceeeEEcccchhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKK--GVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAG 78 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKk--GI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~ 78 (225)
||.+..=-.+.-..+||+++.+.. .-+..+|-. .- ||++++|-..|+.|.+.|+|... |.. +|.......
T Consensus 3 ~M~~~~~~md~~d~~IL~~L~~~g-~~s~~eLA~---~l~~giS~~aVs~rL~~Le~~GLV~~~--~rg--~Y~LT~~G~ 74 (111)
T 3b73_A 3 AMRQSGSWMTIWDDRILEIIHEEG-NGSPKELED---RDEIRISKSSVSRRLKKLADHDLLQPL--ANG--VYVITEEGE 74 (111)
T ss_dssp CCCBCCTTCCHHHHHHHHHHHHHS-CBCHHHHHT---STTCCSCHHHHHHHHHHHHHTTSEEEC--STT--CEEECHHHH
T ss_pred hhhhhhhhcCHHHHHHHHHHHHcC-CCCHHHHHH---HHhcCCCHHHHHHHHHHHHHCCCEEec--CCc--eEEECchHH
Confidence 555432113344589999998754 567777754 55 89999999999999999999875 444 777765554
Q ss_pred h
Q 027291 79 N 79 (225)
Q Consensus 79 ~ 79 (225)
.
T Consensus 75 ~ 75 (111)
T 3b73_A 75 A 75 (111)
T ss_dssp H
T ss_pred H
Confidence 3
No 37
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=90.09 E-value=4.3 Score=29.68 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
+-|+|..+ -.||.++... ..-+..||-+.. |++..+|-.+|+.|++.|+|.....+
T Consensus 24 ~~~l~~~~--~~iL~~l~~~-~~~~~~ela~~l---~~s~~tvs~~l~~L~~~glv~~~~~~ 79 (138)
T 3bpv_A 24 HLNLTDAQ--VACLLRIHRE-PGIKQDELATFF---HVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp GGTCCHHH--HHHHHHHHHS-TTCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hcCCCHHH--HHHHHHHHHc-CCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 34787664 6788888875 456888887765 89999999999999999999986554
No 38
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=90.07 E-value=0.27 Score=35.33 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchh-cHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQ-SVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~-~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
++..+=+.+||.++..... -+.+||=+. -||+.+ .|--.|+.|-.||+|...-.|- -+|+.......
T Consensus 7 ~~~~~~~~~IL~~Lk~~g~-~ta~eiA~~---Lgit~~~aVr~hL~~Le~eGlV~~~~~gR--P~w~LT~~g~~ 74 (79)
T 1xmk_A 7 LDMAEIKEKICDYLFNVSD-SSALNLAKN---IGLTKARDINAVLIDMERQGDVYRQGTTP--PIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHTCC-EEHHHHHHH---HCGGGHHHHHHHHHHHHHTTSEEEECSSS--CEEEECHHHHT
T ss_pred ccchhHHHHHHHHHHHcCC-cCHHHHHHH---cCCCcHHHHHHHHHHHHHCCCEEecCCCC--CCeEeCHhHHh
Confidence 4456678999998887764 466666544 499999 9999999999999999655554 49998766543
No 39
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=89.85 E-value=0.38 Score=35.99 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
.-|.+||.++... ..+..||-... ||+..+|--.|..|.+.|+|...+-|...+|.--+
T Consensus 21 ~~r~~IL~~L~~~--~~~~~eLa~~l---gis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~ 79 (118)
T 2jsc_A 21 PTRCRILVALLDG--VCYPGQLAAHL---GLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALAD 79 (118)
T ss_dssp HHHHHHHHHHHTT--CCSTTTHHHHH---SSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESS
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceEEEEECCEEEEEECh
Confidence 4577899988742 35777776554 89999999999999999999999988766554433
No 40
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=89.73 E-value=1.9 Score=30.06 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc---ccceeeEEcccchh
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK---IGTSVYFWSLPSCA 77 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK---iGssN~YWsFps~~ 77 (225)
.-+-+||.++.... .-+..||-+.. ||+..+|--.|+.|.+.|+|...+ -|-. .|++.....
T Consensus 16 ~~~~~iL~~L~~~~-~~~~~ela~~l---~is~~tvs~~l~~L~~~gli~~~~~~~~~r~-~~~~lt~~g 80 (100)
T 1ub9_A 16 PVRLGIMIFLLPRR-KAPFSQIQKVL---DLTPGNLDSHIRVLERNGLVKTYKVIADRPR-TVVEITDFG 80 (100)
T ss_dssp HHHHHHHHHHHHHS-EEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEEEECSSSCE-EEEEECHHH
T ss_pred hHHHHHHHHHHhcC-CcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecCCCcce-EEEEECHHH
Confidence 34677888887544 46888887765 899999999999999999999776 4443 344444433
No 41
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=89.61 E-value=5.3 Score=32.86 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
.-+-+||.+++. ...+..||-+.. ||+..+|--.|..|.+.|+|...+.
T Consensus 15 ~~rl~IL~~L~~--~~~s~~eLa~~l---~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 15 ETRRRILFLLTK--RPYFVSELSREL---GVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HHHHHHHHHHHH--SCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceEEEee
Confidence 346778888853 456788887666 8999999999999999999999887
No 42
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=89.24 E-value=0.5 Score=36.94 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccceeeEEc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWS 72 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWs 72 (225)
.+|+-.---|..||++|.++. ..|-.||-..+.+ .+|+..||=-.|..|++.|+|+.=-.|.+..++.
T Consensus 12 ~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~ 81 (145)
T 3eyy_A 12 QRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYH 81 (145)
T ss_dssp TTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred HcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 356666667999999999988 8999998665544 6789999999999999999998766665544333
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.58 E-value=3.7 Score=32.26 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027291 121 EALEELKAVELKHIELKDEM 140 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el 140 (225)
.+-+++.+|+.++.+|+.++
T Consensus 114 ~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 114 ELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 44
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=88.45 E-value=1.1 Score=35.23 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
.-|.+||.++.. ...+..||-.. -||+..+|--.|+.|.+.|+|...+-|...|| +........
T Consensus 58 p~R~~IL~~L~~--~~~t~~eLa~~---lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y-~lt~~~~~~ 121 (151)
T 3f6v_A 58 PTRRRLVQLLTS--GEQTVNNLAAH---FPASRSAISQHLRVLTEAGLVTPRKDGRFRYY-RLDPQGLAQ 121 (151)
T ss_dssp HHHHHHHHHGGG--CCEEHHHHHTT---SSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEEEecCCEEEE-EEChHHHHH
Confidence 457889999973 34677776544 58999999999999999999999999998554 455444433
No 45
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=88.35 E-value=7.4 Score=30.06 Aligned_cols=57 Identities=18% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 3 KKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 3 ~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
.+-|||..+ -.||.++.....--+.+||-... ||...+|--+|..|++.|+|.....
T Consensus 47 ~~~glt~~q--~~vL~~L~~~~~~~t~~eLa~~l---~i~~~tvs~~l~~Le~~GlV~r~~~ 103 (166)
T 3deu_A 47 KPLELTQTH--WVTLHNIHQLPPDQSQIQLAKAI---GIEQPSLVRTLDQLEDKGLISRQTC 103 (166)
T ss_dssp TTTTCCHHH--HHHHHHHHHSCSSEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred hhcCCCHHH--HHHHHHHHHcCCCCCHHHHHHHH---CCCHhhHHHHHHHHHHCCCEEeeCC
Confidence 355888876 67888888866668999986654 8899999999999999999998754
No 46
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=88.30 E-value=0.74 Score=33.31 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccch
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSC 76 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~ 76 (225)
|+...=+.+||.++.... -+.+||=+. -||+.++|.-.|..|.++|+|... +...=-|..+..
T Consensus 13 ~~~~~~~~~IL~lL~~~g--~sa~eLAk~---LgiSk~aVr~~L~~Le~eG~I~~~--~~~PP~W~~~~~ 75 (82)
T 1oyi_A 13 RSNAEIVCEAIKTIGIEG--ATAAQLTRQ---LNMEKREVNKALYDLQRSAMVYSS--DDIPPRWFMTTE 75 (82)
T ss_dssp CCSHHHHHHHHHHHSSST--EEHHHHHHH---SSSCHHHHHHHHHHHHHHTSSEEC--SSSSCEEESCC-
T ss_pred cchHHHHHHHHHHHHHcC--CCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEeC--CCCCCcceeccC
Confidence 455566789999999655 888887554 489999999999999999999886 666666766654
No 47
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=87.90 E-value=1.5 Score=32.97 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccc
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPS 75 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps 75 (225)
.|.+||.++.+ ...+..||-... ||+..+|--.|+.|.+.|+|..++-|...+|..-+.
T Consensus 47 ~rl~IL~~L~~--~~~s~~ela~~l---gis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~ 105 (122)
T 1r1t_A 47 NRLRLLSLLAR--SELCVGDLAQAI---GVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH 105 (122)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 35567777764 346777765554 899999999999999999999999998776665553
No 48
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=87.66 E-value=0.3 Score=39.08 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCC----CcchhcHHHHHHHhhhcCccccccccceeeEEc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKK----GVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWS 72 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKk----GI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWs 72 (225)
+|+-.---|..||++|.++....|-.||-..+.+. +|+..||=-.|..|++.|+|+.=-.|.++.++.
T Consensus 27 ~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~ 98 (162)
T 4ets_A 27 GGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYE 98 (162)
T ss_dssp HTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 35444556899999999999999999997765443 588999999999999999998777777665443
No 49
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=87.45 E-value=1.5 Score=31.61 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
...++-..+||++.+....==+-++|++..|. |.....-.+|..|+..|.|..-|-| +.+||.+.
T Consensus 10 ~~~~~ie~~IL~l~~~~P~GItd~~L~~~~p~--~~~~~r~~aIN~LL~~gkiel~K~~-~~liYr~k 74 (81)
T 2dk8_A 10 ADPVEIENRIIELCHQFPHGITDQVIQNEMPH--IEAQQRAVAINRLLSMGQLDLLRSN-TGLLYRIK 74 (81)
T ss_dssp SCHHHHHHHHHHHHHHCSSCEEHHHHHHHCTT--SCHHHHHHHHHHHHHHTSEEEEECS-SSEEEEEC
T ss_pred ccHHHHHHHHHHHHHhCCCCCCHHHHHHHCCC--CCHHHHHHHHHHHHHcCCeEEEecC-CeEEEEec
Confidence 34566778899999999999999999999975 7789999999999999999999998 55555543
No 50
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=87.12 E-value=1.2 Score=31.79 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=46.4
Q ss_pred CCHH-HHHHHHHHHHhhcc--CccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcc
Q 027291 7 LSLE-EKRGKILEIFYESQ--DFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSL 73 (225)
Q Consensus 7 lS~e-EKr~ril~~f~e~~--~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsF 73 (225)
||.. +...+||+++.+.. +..+..||-+.+ ||+.-+|...|..|.++|+|... |...=||..
T Consensus 5 ~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~L---gvsr~tV~~~L~~Le~~G~I~~~--g~~~~~W~i 69 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKL---GTPKKEINRVLYSLAKKGKLQKE--AGTPPLWKI 69 (81)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEE--SSSSCEEEE
T ss_pred cccchHHHHHHHHHHHHcCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEec--CCCCCeeEE
Confidence 4544 45778999999876 588988886655 78888999999999999999764 443344443
No 51
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=87.03 E-value=7.7 Score=28.82 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
-|||..+ -.||.++.... .-+..||-+.. ||...+|-.+|+.|++.|+|.....
T Consensus 36 ~~lt~~~--~~iL~~l~~~~-~~t~~ela~~l---~~~~~~vs~~l~~Le~~Glv~r~~~ 89 (152)
T 3bj6_A 36 EGVTVGQ--RAILEGLSLTP-GATAPQLGAAL---QMKRQYISRILQEVQRAGLIERRTN 89 (152)
T ss_dssp TTCCHHH--HHHHHHHHHST-TEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred cCCCHHH--HHHHHHHHhCC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCeeecCC
Confidence 4777664 67888887765 56888887765 8899999999999999999988654
No 52
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=86.55 E-value=3.7 Score=28.98 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 122 ALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 122 ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
+-.++.+...++..|+.+|.+|+.
T Consensus 45 LEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345577778888888999988875
No 53
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=85.92 E-value=0.69 Score=39.68 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc-ccceeeEEcccch
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK-IGTSVYFWSLPSC 76 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK-iGssN~YWsFps~ 76 (225)
|..+|.+. .++|++.. ...|.|.-+|... -|...--.+++|..|+.+|++..|- .+.-..|| |||-
T Consensus 162 p~el~~D~--~~vLe~a~-~~g~vt~~~L~~~---lgW~~~Ra~~~L~~l~~~G~lwvD~q~~~e~~Yw-~P~l 228 (233)
T 1u5t_A 162 PNELTSDQ--TKILEICS-ILGYSSISLLKAN---LGWEAVRSKSALDEMVANGLLWIDYQGGAEALYW-DPSW 228 (233)
T ss_dssp SSCCCTTH--HHHHHTTT-TTSCCBHHHHHHH---HCCCSHHHHHHHHHHHHTTSSEEECSSSSSCEEE-CGGG
T ss_pred CCccchHH--HHHHHHHH-hcCcCcHHHHHHH---hCCCHHHHHHHHHHHHHCCCEEEeCCCCCcccee-chhh
Confidence 44455554 45666554 5778888888754 4888899999999999999999995 42246799 8874
No 54
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=85.57 E-value=9.5 Score=28.48 Aligned_cols=51 Identities=25% Similarity=0.431 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
|+|..+ -.+|.++ ....-+.+||-... |++..+|--+|..|++.|+|..+|
T Consensus 35 ~lt~~q--~~iL~~l--~~~~~t~~eLa~~l---~~~~~~vs~~l~~Le~~Glv~r~~ 85 (151)
T 3kp7_A 35 GISAEQ--SHVLNML--SIEALTVGQITEKQ---GVNKAAVSRRVKKLLNAELVKLEK 85 (151)
T ss_dssp TCCHHH--HHHHHHH--HHSCBCHHHHHHHH---CSCSSHHHHHHHHHHHTTSEEC--
T ss_pred CCCHHH--HHHHHHH--HcCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeeC
Confidence 666654 5677777 55667888876554 888999999999999999999865
No 55
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=85.49 E-value=9 Score=28.15 Aligned_cols=54 Identities=17% Similarity=0.051 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+-|||..+ -.||.++. ....+..||-... |++..+|-.+|+.|++.|+|.....
T Consensus 32 ~~~l~~~~--~~iL~~l~--~~~~~~~ela~~l---~~s~~tvs~~l~~Le~~glv~r~~~ 85 (146)
T 2gxg_A 32 ELNLSYLD--FLVLRATS--DGPKTMAYLANRY---FVTQSAITASVDKLEEMGLVVRVRD 85 (146)
T ss_dssp TTTCCHHH--HHHHHHHT--TSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hcCCCHHH--HHHHHHHh--cCCcCHHHHHHHh---CCCchhHHHHHHHHHHCCCEEeecC
Confidence 34777764 56788887 5667888886654 8999999999999999999988765
No 56
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.42 E-value=1 Score=31.88 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhc-----cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 12 KRGKILEIFYES-----QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 12 Kr~ril~~f~e~-----~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
-...||+|+.+. ..+-|..||-... ||++++|...|..|...|+|...-
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~l---gvS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAA---GLSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCcEEecC
Confidence 467899999987 5777888876554 899999999999999999998775
No 57
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=84.62 E-value=17 Score=30.59 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc-ccccc-----eeeEE
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK-DKIGT-----SVYFW 71 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~-EKiGs-----sN~YW 71 (225)
.-|.+||.++.. ...+..|| +...|++..+|--.|..|.+.|+|.. .+.|. ..+|.
T Consensus 12 ~~R~~IL~~L~~--g~~s~~EL---a~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~ 73 (232)
T 2qlz_A 12 KVRRDLLSHLTC--MECYFSLL---SSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYK 73 (232)
T ss_dssp HHHHHHHHHHTT--TTTCSSSS---CTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEE
T ss_pred HHHHHHHHHHHh--CCCCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEE
Confidence 457789998875 33555554 33469999999999999999999999 78887 66665
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.61 E-value=2.9 Score=31.85 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKK---RHTELVEQCNALKKGRE-ESDEREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~---~i~~l~~~ie~~k~~r~-~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
++..+++++.++...+. .|.-|+.+++--+.... +-..|..+-.+.++|..++..|+.++..|
T Consensus 43 Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 43 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 44555555555554444 23333333332222111 12357777788888888888887776544
No 59
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=84.29 E-value=11 Score=27.93 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc--ceeeEEcccchhhh
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG--TSVYFWSLPSCAGN 79 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG--ssN~YWsFps~~~~ 79 (225)
+-|||..+ -.||.+++.... -+..||-.. -|+...+|--+|..|++.|+|...... --.+|+++......
T Consensus 26 ~~~lt~~q--~~iL~~l~~~~~-~t~~eLa~~---l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~ 97 (145)
T 3g3z_A 26 QQDLNYNL--FAVLYTLATEGS-RTQKHIGEK---WSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKA 97 (145)
T ss_dssp TTTCCHHH--HHHHHHHHHHCS-BCHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHH
T ss_pred HcCCCHHH--HHHHHHHHHCCC-CCHHHHHHH---HCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHH
Confidence 45788776 678888877665 788888655 489999999999999999999875442 22345555544433
No 60
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.15 E-value=18 Score=30.54 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027291 125 ELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 125 ~l~~L~~~~~~l~~el~~~~ 144 (225)
++..|..++..+..++..+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 61
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=84.09 E-value=9.7 Score=27.81 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIE-LKDEMGQYAD 145 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~-l~~el~~~~~ 145 (225)
-.++..+..++..+++...-+....-.+..+. .++..|..+..++...+.++.. |+.++.++.+
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~---~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSI---GDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35566666666666666666666555544431 2456788888888888888888 8888887764
No 62
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=83.76 E-value=2.4 Score=30.49 Aligned_cols=67 Identities=12% Similarity=0.237 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHH
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRN 83 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~ 83 (225)
..|-+||..+.... ..+..||-... |++..+|--.|+.|.+. +|..++-|...|| +...........
T Consensus 27 ~~Rl~IL~~l~~~~-~~~~~ela~~l---~is~stvs~hL~~L~~~-lv~~~~~gr~~~y-~l~~~~~~~~~~ 93 (99)
T 2zkz_A 27 PMRLKIVNELYKHK-ALNVTQIIQIL---KLPQSTVSQHLCKMRGK-VLKRNRQGLEIYY-SINNPKVEGIIK 93 (99)
T ss_dssp HHHHHHHHHHHHHS-CEEHHHHHHHH---TCCHHHHHHHHHHHBTT-TBEEEEETTEEEE-ECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CcCHHHHHHHH---CcCHHHHHHHHHHHHHH-hhhheEeCcEEEE-EEChHHHHHHHH
Confidence 45678886555443 36777776544 89999999999999999 9999999987655 555454444333
No 63
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=83.48 E-value=13 Score=28.36 Aligned_cols=119 Identities=13% Similarity=0.021 Sum_probs=71.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccce-eeEEcccchhhhhHH
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTS-VYFWSLPSCAGNQLR 82 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGss-N~YWsFps~~~~~~~ 82 (225)
+-|||..+ -.+|.++......-+.+||-.. -||...+|--+|..|+..|+|.-.....- -.+.-..........
T Consensus 26 ~~gLt~~q--~~vL~~L~~~~~~~~~~eLa~~---l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 26 PLELTQTH--WVTLYNINRLPPEQSQIQLAKA---IGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp GGCCCHHH--HHHHHHHHHSCTTSCHHHHHHH---HTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HcCCCHHH--HHHHHHHHHcCCCCcHHHHHHH---HCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 45788764 5788888887777788886544 58999999999999999999987665432 123333444444322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 83 NVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMG 141 (225)
Q Consensus 83 ~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~ 141 (225)
..+... .. .+.......-+.+++..+..-+..+...+.+++.+++
T Consensus 101 ~~~~~~----------~~----~~~~~~~~~l~~ee~~~l~~~L~kl~~nl~~l~~k~E 145 (151)
T 4aik_A 101 EQVDGV----------IS----STRKEILGGISSDEIAVLSGLIDKLEKNIIQLQTKLE 145 (151)
T ss_dssp HHHHHH----------HH----HHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHH----------HH----HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 222211 11 1111112223456777777777777777776666554
No 64
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=83.43 E-value=8.4 Score=28.54 Aligned_cols=54 Identities=13% Similarity=0.283 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
|||..+ -.+|.++.... .-+..||-.. -|+.+.+|--+|..|++.|+|......
T Consensus 37 ~l~~~~--~~iL~~l~~~~-~~t~~ela~~---l~~~~~tvs~~l~~Le~~Glv~r~~~~ 90 (148)
T 3nrv_A 37 GIGMTE--WRIISVLSSAS-DCSVQKISDI---LGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
T ss_dssp TCCHHH--HHHHHHHHHSS-SBCHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred CCCHHH--HHHHHHHHcCC-CCCHHHHHHH---HCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 777764 57888888766 6788887655 489999999999999999999987553
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.38 E-value=12 Score=29.35 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 87 KLESDLQSSKKRHTELVEQCNALKKGREESD-EREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 87 ~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~-eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
.++.+++.++..+.++...+...+..-.... .=..+-+++.+|+.++..|+.++.++
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433111000 11234444555555555555555444
No 66
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=83.02 E-value=8.1 Score=28.80 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHhhccCc-cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDF-YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~-ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
|||.. ..+||.++.+.... .|..||=+. -|+..-+|--.|+.|++.|+|.....
T Consensus 23 gLt~~--e~~il~~L~~~~~~~~t~~eLa~~---l~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 23 NLTKA--DLNVMKSFLNEPDRWIDTDALSKS---LKLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp TCCHH--HHHHHHHHHHSTTCCEEHHHHHHH---HTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHH--HHHHHHHHHHCCCCCcCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 67755 46799999988776 899998554 47899999999999999999988653
No 67
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=82.55 E-value=12 Score=27.39 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
+-|||..+ -.+|.++.... .-+..||-... |++..+|--+|+.|++.|+|.....+
T Consensus 24 ~~~lt~~~--~~iL~~l~~~~-~~t~~~la~~l---~~s~~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 24 ELSLTRGQ--YLYLVRVCENP-GIIQEKIAELI---KVDRTTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp GGTCTTTH--HHHHHHHHHST-TEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HcCCCHHH--HHHHHHHHHCc-CcCHHHHHHHH---CCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 34676654 56788887764 56788887665 88999999999999999999987643
No 68
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=82.40 E-value=1.2 Score=40.09 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=42.7
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
.+|++++... -+.+.+++.+. .||+..|+.-.|..|++.|+|...+.|-+ -||.++
T Consensus 300 ~~ll~~l~~~-p~~t~~~~~~~---~gvS~~Ta~r~L~~L~e~GiL~~~~~gR~-~~y~~~ 355 (373)
T 2qc0_A 300 HELVQVIFEQ-PYCRIQNLVES---GLAKRQTASVYLKQLCDIGVLEEVQSGKE-KLFVHP 355 (373)
T ss_dssp HHHHHHHHHC-SEEEHHHHHHT---SSSCHHHHHHHHHHHHHTTSCEEC--CCS-CEEECH
T ss_pred HHHHHHHHhC-CcccHHHHHHH---hCCCHHHHHHHHHHHHHCCcEEEecCCCc-eEEehH
Confidence 4566766654 46788877655 48999999999999999999998888865 677766
No 69
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=82.39 E-value=12 Score=28.01 Aligned_cols=54 Identities=9% Similarity=0.207 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
-|||..+ -.||.++.... .-+.+||-... |+.+.+|--+|..|+..|+|.....
T Consensus 37 ~~lt~~q--~~iL~~l~~~~-~~~~~eLa~~l---~~~~~~vs~~l~~L~~~Glv~r~~~ 90 (149)
T 4hbl_A 37 FGITYSQ--YLVMLTLWEEN-PQTLNSIGRHL---DLSSNTLTPMLKRLEQSGWVKRERQ 90 (149)
T ss_dssp TTCCHHH--HHHHHHHHHSS-SEEHHHHHHHH---TCCHHHHHHHHHHHHHHTSEEC---
T ss_pred cCCCHHH--HHHHHHHHHCC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEeeCCC
Confidence 4788765 67888887764 45888887665 8999999999999999999998754
No 70
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=82.20 E-value=2.7 Score=29.40 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=43.0
Q ss_pred HHHHHHHHhhcc--CccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEc
Q 027291 13 RGKILEIFYESQ--DFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWS 72 (225)
Q Consensus 13 r~ril~~f~e~~--~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWs 72 (225)
..+||.++.+.. +-.|.+||=+.+ ||+.-+|.-.|..|.++|+|... |+..=||.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~L---gvs~~tV~~~L~~L~~~G~I~~~--g~~~~~W~ 72 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKL---GTPKKEINRVLYSLAKKGKLQKE--AGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHH---CCCHHHHHHHHHHHHHHTSEEEE--CSSSCEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEec--CCCCCceE
Confidence 478999999987 477888875554 78888999999999999999654 54444554
No 71
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=82.11 E-value=13 Score=27.33 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc--cceeeEEcccchh
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI--GTSVYFWSLPSCA 77 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi--GssN~YWsFps~~ 77 (225)
+-|+|..+ -+||.++.... -+..||-... |++..+|-.+|..|++.|+|..... .--.++++.....
T Consensus 33 ~~~lt~~~--~~iL~~l~~~~--~t~~eLa~~l---~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g 101 (146)
T 3tgn_A 33 EVALTNTQ--EHILMLLSEES--LTNSELARRL---NVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLA 101 (146)
T ss_dssp SSCCCHHH--HHHHHHHTTCC--CCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEC----------CCEECGGG
T ss_pred ccCCCHHH--HHHHHHHHhCC--CCHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhH
Confidence 34788775 67899998877 8999987776 8999999999999999999987653 2233444444433
No 72
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=81.56 E-value=11 Score=27.40 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccC-ccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQD-FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~-~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+-|||..+ -.+|.++..... .-+..||-+.. |++..+|-.+|+.|++.|+|.....
T Consensus 29 ~~~lt~~~--~~iL~~l~~~~~~~~~~~ela~~l---~~~~~tvs~~l~~Le~~Gli~r~~~ 85 (141)
T 3bro_A 29 KYDLTGTQ--MTIIDYLSRNKNKEVLQRDLESEF---SIKSSTATVLLQRMEIKKLLYRKVS 85 (141)
T ss_dssp TTTCCHHH--HHHHHHHHHTTTSCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HcCCCHHH--HHHHHHHHHCCCCCcCHHHHHHHH---CCCcchHHHHHHHHHHCCCEEeeCC
Confidence 34788764 568888887753 56899986655 8899999999999999999988754
No 73
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=81.48 E-value=13 Score=26.96 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
|+|..+ -.||.++.... .-+..||-... |+...+|--+|+.|++.|+|.....
T Consensus 35 ~l~~~~--~~iL~~l~~~~-~~t~~ela~~l---~~~~~tvs~~l~~L~~~glv~r~~~ 87 (140)
T 2nnn_A 35 GLTPTQ--WAALVRLGETG-PCPQNQLGRLT---AMDAATIKGVVERLDKRGLIQRSAD 87 (140)
T ss_dssp CCCHHH--HHHHHHHHHHS-SBCHHHHHHHT---TCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHH--HHHHHHHHHcC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 788764 67888887765 57888886654 8999999999999999999998654
No 74
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=81.27 E-value=9.7 Score=28.10 Aligned_cols=63 Identities=17% Similarity=0.107 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc--eeeEEcccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT--SVYFWSLPS 75 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs--sN~YWsFps 75 (225)
|||..+ -.+|.+++.... +.+||-... |+...+|--+|..|++.|+|....... -.++.++..
T Consensus 34 ~lt~~~--~~iL~~l~~~~~--~~~~la~~l---~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 98 (144)
T 3f3x_A 34 NLSYLD--FSILKATSEEPR--SMVYLANRY---FVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITP 98 (144)
T ss_dssp SCCHHH--HHHHHHHHHSCE--EHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred CCCHHH--HHHHHHHHHCCC--CHHHHHHHH---CCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECH
Confidence 777765 678888888776 999987664 899999999999999999999876543 233444443
No 75
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.24 E-value=8.6 Score=28.19 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
-|||..+ -.||.++......-+..||-... |++..+|-.+|+.|++.|+|.....
T Consensus 33 ~~l~~~~--~~iL~~l~~~~~~~t~~~la~~l---~~s~~~vs~~l~~L~~~glv~r~~~ 87 (146)
T 2fbh_A 33 LGLSQAR--WLVLLHLARHRDSPTQRELAQSV---GVEGPTLARLLDGLESQGLVRRLAV 87 (146)
T ss_dssp GCCTTTH--HHHHHHHHHCSSCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHH--HHHHHHHHHcCCCCCHHHHHHHh---CCChhhHHHHHHHHHHCCCeeecCC
Confidence 4676654 56888884455667888887654 8999999999999999999998764
No 76
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=81.16 E-value=9.4 Score=28.67 Aligned_cols=55 Identities=24% Similarity=0.269 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
|||..+ -.||.+++.....-+.+||-+.. ||...+|--+|+.|++.|+|......
T Consensus 44 ~l~~~~--~~iL~~L~~~~~~~~~~ela~~l---~i~~~tvs~~l~~Le~~Gli~r~~~~ 98 (160)
T 3boq_A 44 GLSLAK--FDAMAQLARNPDGLSMGKLSGAL---KVTNGNVSGLVNRLIKDGMVVKAMSA 98 (160)
T ss_dssp SCCHHH--HHHHHHHHHCTTCEEHHHHHHHC---SSCCSCHHHHHHHHHHHTSEEEC---
T ss_pred CCCHHH--HHHHHHHHHcCCCCCHHHHHHHH---CCChhhHHHHHHHHHHCCCEEeecCC
Confidence 566553 56888886555668999987765 89999999999999999999887543
No 77
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=81.00 E-value=7.7 Score=28.19 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
.+-+||..+.+ ..-++.||-+.. ||+..+|--.|+.|.+.|+|..++-|-..+|-.-+
T Consensus 33 ~~~~il~~L~~--~~~s~~ela~~l---~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~ 90 (119)
T 2lkp_A 33 SRLMILTQLRN--GPLPVTDLAEAI---GMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYD 90 (119)
T ss_dssp HHHHHHHHHHH--CCCCHHHHHHHH---SSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESC
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEch
Confidence 45566776665 346777766554 89999999999999999999999977765554443
No 78
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=80.80 E-value=15 Score=27.27 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
+-|+|..+ -.+|.+++.....-+.+||-... ||...+|--+|..|++.|+|......
T Consensus 34 ~~glt~~q--~~vL~~l~~~~~~~t~~eLa~~l---~i~~~tvs~~l~~Le~~Glv~r~~~~ 90 (150)
T 3fm5_A 34 PTGLRVRS--YSVLVLACEQAEGVNQRGVAATM---GLDPSQIVGLVDELEERGLVVRTLDP 90 (150)
T ss_dssp GGTCCHHH--HHHHHHHHHSTTCCCSHHHHHHH---TCCHHHHHHHHHHHHTTTSEEC----
T ss_pred HcCCCHHH--HHHHHHHHhCCCCcCHHHHHHHH---CCCHhHHHHHHHHHHHCCCEEeeCCc
Confidence 34788765 67888888877778999986655 78999999999999999999876543
No 79
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=80.56 E-value=2.4 Score=34.39 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhhccC--ccchHHH-HhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEE
Q 027291 7 LSLEEKRGKILEIFYESQD--FYLLKEL-EKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFW 71 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~--~ytlKEL-EK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YW 71 (225)
++.++=.++|+++.+.... .+++-.. +.++.+-|++.--.+++|+.++++|+++.|.-.++..||
T Consensus 95 ~~~d~~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~~G~~y~ 162 (169)
T 1u5t_B 95 EKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYY 162 (169)
T ss_dssp SCSHHHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEEEECSSCEEEE
T ss_pred CChhHHHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCcceEE
Confidence 3555545678888876532 2223333 557788999999999999999999999999654556676
No 80
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.55 E-value=14 Score=26.62 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 86 RKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 86 ~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
++|..+|..+-..|.-|+..|+++
T Consensus 9 eqLE~KIq~avdtI~lLqmEieEL 32 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEEL 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333
No 81
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=80.47 E-value=9.1 Score=28.50 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
-|||..+ -.||.+++... .-+..||-+.. |++..+|--+|+.|++.|+|.....+
T Consensus 33 ~~l~~~~--~~iL~~l~~~~-~~t~~ela~~l---~~s~~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 33 QGVTPAQ--LFVLASLKKHG-SLKVSEIAERM---EVKPSAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp TTCCHHH--HHHHHHHHHHS-EEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCCHHH--HHHHHHHHHcC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 4677765 57788887754 46888886654 89999999999999999999876543
No 82
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=80.36 E-value=5.3 Score=29.91 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL 60 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~ 60 (225)
+...+||..++.... -+..||=+.. |++..+|-..|+.|.++|+|.
T Consensus 4 ~~~~~il~~L~~~~~-~~~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 4 ERDKIILEILEKDAR-TPFTEIAKKL---GISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp SHHHHHHHHHHHCTT-CCHHHHHHHH---TSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEe
Confidence 345688999887654 4888876655 999999999999999999996
No 83
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=80.10 E-value=12 Score=27.49 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc--eeeEEcccch
Q 027291 3 KKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT--SVYFWSLPSC 76 (225)
Q Consensus 3 ~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs--sN~YWsFps~ 76 (225)
++-|||..+ -.||.++... ..-+..||-... |+...+|--+|+.|++.|+|....... -.++.++...
T Consensus 31 ~~~~lt~~~--~~iL~~l~~~-~~~t~~eLa~~l---~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~ 100 (143)
T 3oop_A 31 ASYDVTPEQ--WSVLEGIEAN-EPISQKEIALWT---KKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDK 100 (143)
T ss_dssp TTSSSCHHH--HHHHHHHHHH-SSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHH
T ss_pred hhCCCCHHH--HHHHHHHHHc-CCcCHHHHHHHH---CCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHH
Confidence 345788776 5778888776 456888886554 899999999999999999998765432 2344444433
No 84
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=79.57 E-value=15 Score=26.60 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=38.8
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
-.||..+.. ..-+..||-+..| ||+..+|-..|..|.+.|+|.....+
T Consensus 25 ~~IL~~L~~--~~~~~~eLa~~l~--~is~~tvs~~L~~Le~~GlI~r~~~~ 72 (112)
T 1z7u_A 25 LSLMDELFQ--GTKRNGELMRALD--GITQRVLTDRLREMEKDGLVHRESFN 72 (112)
T ss_dssp HHHHHHHHH--SCBCHHHHHHHST--TCCHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred HHHHHHHHh--CCCCHHHHHHHhc--cCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 456776664 3468888888776 89999999999999999999987664
No 85
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=79.20 E-value=1.1 Score=30.56 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=39.8
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
..+|+++..+.-|.. ++..+.+-||....|.++|..|-..|||..|
T Consensus 13 ~~lL~yIr~sGGild---I~~~a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 13 RELLDYIVNNGGFLD---IEHFSKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHTTSEEE---HHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCEEe---HHHHHHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 468999999999985 5566677899999999999999999999765
No 86
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.31 E-value=21 Score=36.63 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q 027291 149 AAFEAMKNAIEVAHAAANRWTDNI 172 (225)
Q Consensus 149 ~~i~~~k~~~~~~k~aanrwTDNI 172 (225)
+.+..++++...+++.++.-...|
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666655544444333
No 87
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=78.28 E-value=17 Score=26.36 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHH
Q 027291 119 REEALEELKAVELKHIELKDEMGQYAD----NDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMY 194 (225)
Q Consensus 119 R~~ll~~l~~L~~~~~~l~~el~~~~~----~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~ 194 (225)
++.+-.++..|+.+...|..++..+.. .||+.+-+ +-+..+++ -|-.-|=--.|..-+...-|+.-.+ +.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~--~hI~~Lh~-YNeiKD~gq~L~g~iA~~rgv~~~~---v~ 76 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQ--KHIDLLHT-YNEIRDIALGMIGKVAEHEKCTSVE---LF 76 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHTTSCGGG---GH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH--HHHHHHHH-HhHHHHHHHHHHHHHHHHcCCcHHH---HH
Confidence 345666667777777777777766553 36654322 22222211 2333343445666666677888777 56
Q ss_pred hhcCCCCC
Q 027291 195 KDVGIPED 202 (225)
Q Consensus 195 ~~fgIp~d 202 (225)
.+||+..+
T Consensus 77 ~e~g~~~~ 84 (85)
T 3viq_B 77 DRFGVNGS 84 (85)
T ss_dssp HHHTCCTT
T ss_pred HHhCCCCC
Confidence 68988753
No 88
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=77.66 E-value=11 Score=35.57 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=47.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGRE-----ESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~-----~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
+....+..+...++.+++.++.+...+..+|...+...+ ..+++.+++++..+|..+++.|..++..+.
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~ 143 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE 143 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777788888888888888888876554221 114667888888888888877777665544
No 89
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=77.42 E-value=19 Score=26.58 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHhhcc-CccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQ-DFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~-~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
-|+|..+ -.+|.+++... ..-+.+||-.. -|+...+|--+|..|++.|+|.....
T Consensus 37 ~glt~~q--~~vL~~l~~~~~~~~t~~eLa~~---l~~~~~~vs~~l~~L~~~Glv~r~~~ 92 (148)
T 3jw4_A 37 LGLNSQQ--GRMIGYIYENQESGIIQKDLAQF---FGRRGASITSMLQGLEKKGYIERRIP 92 (148)
T ss_dssp TTCCHHH--HHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC--
T ss_pred CCCCHHH--HHHHHHHHhCCCCCCCHHHHHHH---HCCChhHHHHHHHHHHHCCCEEeeCC
Confidence 4777765 67888888763 56788888765 48899999999999999999988754
No 90
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=77.39 E-value=2.4 Score=34.09 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCc-ccccc
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDL-VLKDK 63 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDgl-V~~EK 63 (225)
|+..+.+.+||.++.+...+.|.+||=+.. ||+..||..-|+.|.+.|+ |....
T Consensus 17 m~~~~R~~~Il~~L~~~~~~~s~~eLa~~l---~vS~~Ti~rdi~~L~~~G~~I~~~~ 71 (187)
T 1j5y_A 17 TVRQERLKSIVRILERSKEPVSGAQLAEEL---SVSRQVIVQDIAYLRSLGYNIVATP 71 (187)
T ss_dssp HHHHHHHHHHHHHHHHCSSCBCHHHHHHHH---TSCHHHHHHHHHHHHHHTCCCEEET
T ss_pred hhHHHHHHHHHHHHHHcCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEC
Confidence 445678889999999887889999986654 8999999999999999998 86543
No 91
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=77.28 E-value=9.6 Score=35.35 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=38.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
+....+..+...++.+++.++.+...+..+|...+...+ ++.+++++..+|..+++.++.++..+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE---PVDELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666777777777777777777776554332 34455666666666665555555443
No 92
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.10 E-value=20 Score=26.59 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=40.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEM 140 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el 140 (225)
+....++..+..|+.++.....++..|...+..... -|...-..+..+..++..|...|
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~------~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENE------LRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888888888888888877777665 44555555666666666666555
No 93
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=76.76 E-value=20 Score=26.38 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=49.1
Q ss_pred HHHHHHHHHhh-ccCccch-HHHHhhccCCC--cch-hcHHHHHHHhhhcCccccccc---cceeeEEcccchhhhhHHH
Q 027291 12 KRGKILEIFYE-SQDFYLL-KELEKLGPKKG--VIT-QSVKDVVQSLVDDDLVLKDKI---GTSVYFWSLPSCAGNQLRN 83 (225)
Q Consensus 12 Kr~ril~~f~e-~~~~ytl-KELEK~~pKkG--I~~-~~VKdvlQ~LVDDglV~~EKi---GssN~YWsFps~~~~~~~~ 83 (225)
=+-.||.++.+ ...+|.| +.|+. ..--+ |++ -+|=-+|..|.++|+|..... |-.--|++...........
T Consensus 14 ~~~~IL~~L~~~~~~gyel~~~l~~-~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~ 92 (118)
T 2esh_A 14 LASTILLLVAEKPSHGYELAERLAE-FGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLRE 92 (118)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHT-TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH-hCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHH
Confidence 34567777765 3445554 45554 12223 788 899999999999999998864 4344566887776665554
Q ss_pred HHHH
Q 027291 84 VYRK 87 (225)
Q Consensus 84 ~~~~ 87 (225)
....
T Consensus 93 ~~~~ 96 (118)
T 2esh_A 93 ILRS 96 (118)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 94
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=76.49 E-value=14 Score=26.91 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcc-CccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQ-DFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~-~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+-|+|..+ -.+|.+++..+ ..-+..||-... |++..+|--+|..|++.|+|.....
T Consensus 26 ~~~lt~~~--~~vL~~l~~~~~~~~t~~ela~~l---~~~~~tvs~~l~~Le~~Gli~r~~~ 82 (139)
T 3eco_A 26 QFDITNEQ--GHTLGYLYAHQQDGLTQNDIAKAL---QRTGPTVSNLLRNLERKKLIYRYVD 82 (139)
T ss_dssp GGTCCHHH--HHHHHHHHHSTTTCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HcCCCHHH--HHHHHHHHhcCCCCcCHHHHHHHh---CCCcccHHHHHHHHHHCCCEeecCC
Confidence 34777654 67888888875 678888886654 8999999999999999999987754
No 95
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=76.48 E-value=5.8 Score=25.56 Aligned_cols=57 Identities=21% Similarity=0.178 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccC--CCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPK--KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pK--kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
..+.+..|+.++ ..+.+.|..||-....+ .||+..||--.|. +-|+|.+. .+.+.++
T Consensus 3 ~~~R~~~i~~ll-~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v~~~-~~~~~~~ 61 (64)
T 2p5k_A 3 KGQRHIKIREII-TSNEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLVKVP-TNNGSYK 61 (64)
T ss_dssp HHHHHHHHHHHH-HHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCEEEE-ETTTEEE
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCEEEe-cCCCcee
Confidence 344455566665 45679999999887765 5788999998888 44888443 3334443
No 96
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=76.43 E-value=5.6 Score=28.58 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
.++-.++||+.|.+.....+-.||-+. .||-.--|--++..|=.+|.|.+.| -.||+..
T Consensus 17 ~~d~eekVLe~LkeaG~PlkageIae~---~GvdKKeVdKaik~LKkEgkI~SPk----RCyw~~~ 75 (80)
T 2lnb_A 17 EGHLEQRILQVLTEAGSPVKLAQLVKE---CQAPKRELNQVLYRMKKELKVSLTS----PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHHHHTSCEEHHHHHHH---HTSCHHHHHHHHHHHHHTTSEEEEE----TTEEEES
T ss_pred cchHHHHHHHHHHHcCCCCCHHHHHHH---HCCCHHHHHHHHHHHHHcCCccCCC----CceeeCC
Confidence 455679999999999999999998766 3777777888889999999998883 2499875
No 97
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=76.07 E-value=13 Score=34.85 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~ 142 (225)
..+..+...++.+++.++.+...+..+|...+...++ ...++++..+|..+++.|+.++..
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~---~~~l~~~~~~l~~~i~~le~~~~~ 96 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKED---AKDLIAEKEKLSNEKKEIIEKEAE 96 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666655543332 234555555555555555554443
No 98
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=75.92 E-value=5.2 Score=33.40 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
|++.=+|--+||++|.+.....++.||-.. .|+..-+|--+|+.|++.|+|..+
T Consensus 3 ~v~sl~r~l~iL~~l~~~~~~~~~~ela~~---~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 3 HMNTLKKAFEILDFIVKNPGDVSVSEIAEK---FNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp -CTTHHHHHHHHHHHHHCSSCBCHHHHHHH---TTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred ccHHHHHHHHHHHHHHhCCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCcEEEC
Confidence 455567889999999988778899987654 489999999999999999999988
No 99
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=75.77 E-value=8.9 Score=28.30 Aligned_cols=61 Identities=7% Similarity=0.112 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
.++..+..++..+++...-+....-.+.. -++..|..+..++...+.++..|+.++..+..
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~-----~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVRE-----IPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555444444433322211 15667999999999999999999998887653
No 100
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=75.30 E-value=23 Score=26.48 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
|||..+ -.||.+++... .-+..||-... ||...+|-.+|+.|++.|+|....
T Consensus 49 ~lt~~~--~~iL~~l~~~~-~~t~~ela~~l---~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 49 GLSTAK--MRALAILSAKD-GLPIGTLGIFA---VVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp TCCHHH--HHHHHHHHHSC-SEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHH--HHHHHHHHHCC-CCCHHHHHHHH---CCChhHHHHHHHHHHHCCCEEecC
Confidence 677654 57788887755 46888886654 899999999999999999998764
No 101
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=75.29 E-value=21 Score=26.75 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
-|||..+ -.+|.++.... .-+..||-... |+...+|--+|..|++.|+|.....
T Consensus 46 ~~lt~~q--~~vL~~l~~~~-~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~r~~~ 99 (159)
T 3s2w_A 46 YGIGSGQ--FPFLMRLYRED-GINQESLSDYL---KIDKGTTARAIQKLVDEGYVFRQRD 99 (159)
T ss_dssp GTCCTTT--HHHHHHHHHSC-SEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCHHH--HHHHHHHHHCC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEecC
Confidence 3566654 56788887764 35888875554 8999999999999999999987754
No 102
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=74.92 E-value=15 Score=27.23 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhc--cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc-eeeEEcccch
Q 027291 9 LEEKRGKILEIFYES--QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT-SVYFWSLPSC 76 (225)
Q Consensus 9 ~eEKr~ril~~f~e~--~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs-sN~YWsFps~ 76 (225)
..+.--++|.++... ....+..||= ..-||+..+|..+++.|...|+|.+.+ |. +-|.-+-|..
T Consensus 7 ~~~~al~iL~~la~~~~~~~~s~~ela---~~~~i~~~~v~~il~~L~~~Glv~~~~-g~~ggy~L~~~~~ 73 (129)
T 2y75_A 7 KGRYGLTIMIELAKKHGEGPTSLKSIA---QTNNLSEHYLEQLVSPLRNAGLVKSIR-GAYGGYVLGSEPD 73 (129)
T ss_dssp HHHHHHHHHHHHHHTTTSCCBCHHHHH---HHTTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSCGG
T ss_pred HHHHHHHHHHHHHhCCCCCcCCHHHHH---HHHCcCHHHHHHHHHHHHHCCceEecC-CCCCceEeCCCHH
Confidence 344556788888765 4678888763 335999999999999999999998876 63 5555555543
No 103
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=74.86 E-value=22 Score=26.03 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
-|||..+ -.+|.+++... .-+.+||-... ||.+.+|--+|..|++.|+|......
T Consensus 33 ~~lt~~~--~~vL~~l~~~~-~~t~~eLa~~l---~~~~~tvs~~l~~L~~~Glv~r~~~~ 87 (142)
T 3ech_A 33 LDLTPPD--VHVLKLIDEQR-GLNLQDLGRQM---CRDKALITRKIRELEGRNLVRRERNP 87 (142)
T ss_dssp CCCCHHH--HHHHHHHHHTT-TCCHHHHHHHH---C---CHHHHHHHHHHHTTSEEC----
T ss_pred CCCCHHH--HHHHHHHHhCC-CcCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEeeccCC
Confidence 4677765 67888888866 56889886655 89999999999999999999887653
No 104
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=74.75 E-value=22 Score=25.90 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
|||..+ -.||.++.... .-+..||-+.. |++..+|-.+|+.|++.|+|.....+
T Consensus 30 ~l~~~~--~~iL~~l~~~~-~~~~~~la~~l---~~s~~tvs~~l~~L~~~glv~r~~~~ 83 (145)
T 2a61_A 30 GITPAQ--FDILQKIYFEG-PKRPGELSVLL---GVAKSTVTGLVKRLEADGYLTRTPDP 83 (145)
T ss_dssp TCCHHH--HHHHHHHHHHC-CBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHH--HHHHHHHHHcC-CCCHHHHHHHH---CCCchhHHHHHHHHHHCCCeeecCCC
Confidence 677654 67888887744 56888887655 89999999999999999999987543
No 105
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=74.69 E-value=8.2 Score=29.48 Aligned_cols=64 Identities=20% Similarity=0.417 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc-------ccccce--eeE-Ecccch
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK-------DKIGTS--VYF-WSLPSC 76 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~-------EKiGss--N~Y-WsFps~ 76 (225)
+++...+||..++... .-+..||=+. -|++..+|-..|+.|.+.|+|.. .+.|-. .|+ |..+..
T Consensus 5 ld~~~~~il~~L~~~~-~~s~~ela~~---lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~~~ 78 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDG-KAPLREISKI---TGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAG 78 (151)
T ss_dssp CCHHHHHHHHHHHHCT-TCCHHHHHHH---HCSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEECTT
T ss_pred cCHHHHHHHHHHHHcC-CCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEECcc
Confidence 4456678999998865 4677776443 48999999999999999999975 788864 333 466643
No 106
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=74.49 E-value=4.5 Score=30.85 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc-------cccccce
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL-------KDKIGTS 67 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~-------~EKiGss 67 (225)
+++...+||..++... .-+..||=+ .-|++..+|-..|+.|.+.|+|. -.+.|-.
T Consensus 7 ld~~d~~il~~L~~~~-~~s~~ela~---~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~ 68 (151)
T 2dbb_A 7 LDRVDMQLVKILSENS-RLTYRELAD---ILNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYM 68 (151)
T ss_dssp CCHHHHHHHHHHHHCT-TCCHHHHHH---HTTSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEE
T ss_pred CCHHHHHHHHHHHHcC-CCCHHHHHH---HHCcCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCC
Confidence 3455568999998764 457777644 46999999999999999999996 5678853
No 107
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=74.31 E-value=20 Score=28.46 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 027291 119 REEALEELKAVELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCS 180 (225)
Q Consensus 119 R~~ll~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~ 180 (225)
=..+...+.+...++..+..+|..|.+. ||++++.+...+..+...+-+|...+.-|..|..
T Consensus 89 l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~ 153 (175)
T 4abx_A 89 VMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGA 153 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567788888888888888899888764 9999999999988888887777777777777754
No 108
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=74.26 E-value=8.4 Score=29.23 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc-------ccccce--eeE-Ecccch
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK-------DKIGTS--VYF-WSLPSC 76 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~-------EKiGss--N~Y-WsFps~ 76 (225)
+++...+||.+++.... -+..||=+. -|++..+|-..|+.|.+.|+|.. .+.|-. .++ |..|..
T Consensus 3 ld~~d~~il~~L~~~~~-~s~~ela~~---lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~ 76 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSR-LSMRELGRK---IKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNA 76 (144)
T ss_dssp CCHHHHHHHHHHHHCSC-CCHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEGGG
T ss_pred CCHHHHHHHHHHHHcCC-CCHHHHHHH---HCcCHHHHHHHHHHHHHCCCeEEEecccChhhcCceEEEEEEEEECcc
Confidence 34556689999987643 677776444 58999999999999999999973 577854 233 445543
No 109
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=74.12 E-value=25 Score=26.25 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
|||..+ -.||.++... ...+.+||-... ||+..+|--+|+.|++.|+|.....
T Consensus 46 ~lt~~~--~~iL~~l~~~-~~~t~~ela~~l---~is~~tvs~~l~~Le~~glv~r~~~ 98 (162)
T 2fa5_A 46 GMAIPE--WRVITILALY-PGSSASEVSDRT---AMDKVAVSRAVARLLERGFIRRETH 98 (162)
T ss_dssp CCCHHH--HHHHHHHHHS-TTCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEC---
T ss_pred CCCHHH--HHHHHHHHhC-CCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEeeecC
Confidence 677665 5678888774 457888886654 7899999999999999999987653
No 110
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=74.12 E-value=20 Score=28.13 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 027291 84 VYRKLESDLQSSKKRHTELVEQCNALKKG--REESDEREEALEELKAVELKHIELKDEMGQYADNDP 148 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~~~ie~~k~~--r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp 148 (225)
-+++|+++++....+..++.+.|..+... +.+..+....-.+...++.++..|+..|....-.||
T Consensus 11 g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~vi~~ 77 (156)
T 2f23_A 11 GYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVILEE 77 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcccCC
Confidence 45667888888667778888888888763 345566777777788889999999999988776665
No 111
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=73.70 E-value=21 Score=25.86 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
|||..+ -+||.++.... .-+..||-+.. |++..+|-.+|+.|++.|+|.....
T Consensus 28 ~l~~~~--~~iL~~l~~~~-~~~~~ela~~l---~is~~~vs~~l~~L~~~gli~~~~~ 80 (142)
T 3bdd_A 28 GISLTR--YSILQTLLKDA-PLHQLALQERL---QIDRAAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp SSCHHH--HHHHHHHHHHC-SBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHH--HHHHHHHHhCC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEecCC
Confidence 666654 57888887754 46888877654 8999999999999999999988765
No 112
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.56 E-value=40 Score=31.50 Aligned_cols=100 Identities=15% Similarity=0.238 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGRE-ESDEREEALEELKAVELKHIELKDEMGQYADN-DPAAFEAMKNAI 158 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~-~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~-Dp~~i~~~k~~~ 158 (225)
....++.|+..++++.....+....+..++..-. ...........+++...++++++..++..-.. -|..|..++..+
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~ 177 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVI 177 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 3444555555555555444443333333332211 11122333334555555566555555544433 367777878888
Q ss_pred HHHHHHHHhhhhhHHHHHHHHH
Q 027291 159 EVAHAAANRWTDNIFTLQQWCS 180 (225)
Q Consensus 159 ~~~k~aanrwTDNI~~l~~~~~ 180 (225)
..++..++....-+..+...|.
T Consensus 178 ~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 178 DSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888888887777777664
No 113
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=73.54 E-value=4.7 Score=38.74 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhcc----CCCcchhcHHHHHHHhhhcCccccccccceeeEEc
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGP----KKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWS 72 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~p----KkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWs 72 (225)
+.=..+||++..+ ..+-|.-+|-+..- +.|+..-..+++|+.++++|++..|.-..+.|||-
T Consensus 493 ~~~~~~il~l~~~-~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~rDd~~~G~~yyp 558 (566)
T 1w7p_D 493 DVVKEKLVDLIGD-NPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYK 558 (566)
T ss_dssp HHHHHHHHHHHTT-STTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHHHh-cCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEEEECCCCceEEeh
Confidence 4456788888865 56667777775554 46699999999999999999999996545666654
No 114
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=72.48 E-value=16 Score=26.67 Aligned_cols=79 Identities=14% Similarity=0.228 Sum_probs=43.8
Q ss_pred cchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH
Q 027291 41 VITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDERE 120 (225)
Q Consensus 41 I~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~ 120 (225)
++.|+|+|+.+.|- -||.+....++..--.|+....+...+...+....+-+ .+..
T Consensus 3 Lv~msVreLN~~L~-----------------gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE-------~e~~ 58 (90)
T 2wt7_B 3 LVSMSVRELNRHLR-----------------GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLE-------NEKT 58 (90)
T ss_dssp HHHSCHHHHHTTCT-----------------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred cccCCHHHHHHHHc-----------------CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 56899999998871 35666666666666667666666555555443332111 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027291 121 EALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
.+..+++.|..++..+..++..|
T Consensus 59 ~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 59 QLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 115
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=72.26 E-value=10 Score=26.67 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhccCc---cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceee
Q 027291 12 KRGKILEIFYESQDF---YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVY 69 (225)
Q Consensus 12 Kr~ril~~f~e~~~~---ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~ 69 (225)
+...+|.++.....- -+.+||-... ||...+|--+|..|+..|+|..+.=|-..+
T Consensus 13 ~~~~iL~~l~~~~~~~~~~t~~eLa~~l---~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~ 70 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDVYIQYIASKV---NSPHSYVWLIIKKFEEAKMVECELEGRTKI 70 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCEEHHHHHHHS---SSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred hHHHHHHHHHHccCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCcCccCCCCCCeEE
Confidence 445667666554444 7888887654 889999999999999999994444443333
No 116
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=72.24 E-value=11 Score=26.38 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhc-HHHHHHHhhhcCccccccccceeeEEcccchhhhhH
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQS-VKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQL 81 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~-VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~ 81 (225)
+.-.+|.+++......+.+||-+.. |+...+ |--+|+.|++.|+|..+.-+--..+.+ ........
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l---~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~-LT~~G~~~ 82 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKAS---GVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLK-LTEKGRRL 82 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHH---CCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEE-ECHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHH---CCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEE-ECHhHHHH
Confidence 3445677777776568999987665 789999 999999999999999433333334444 44444443
No 117
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=72.19 E-value=11 Score=27.87 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=13.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELV 103 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~ 103 (225)
+....++.++.+|+++|+........+.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~ 42 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALK 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555554444443333
No 118
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=72.17 E-value=17 Score=26.72 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh
Q 027291 147 DPAAFEAMKNAIEVAHAAANRW 168 (225)
Q Consensus 147 Dp~~i~~~k~~~~~~k~aanrw 168 (225)
+|..=..+...++.++..++++
T Consensus 76 p~s~R~~~~~klr~Yk~dL~~l 97 (102)
T 2qyw_A 76 PLTFRNPMMSKLRNYRKDLAKL 97 (102)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3443344444444454444443
No 119
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=72.15 E-value=2.9 Score=35.33 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
.++..=+|--+||++|.....-.++.||-... |+..-+|--+|+.|++.|+|..+.-|
T Consensus 17 ~~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~---gl~kstv~r~l~tL~~~G~v~~~~~~ 74 (260)
T 2o0y_A 17 AGVRSVTRVIDLLELFDAAHPTRSLKELVEGT---KLPKTTVVRLVATMCARSVLTSRADG 74 (260)
T ss_dssp -CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHH---CCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred cccHHHHHHHHHHHHHhhCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEECCCC
Confidence 45667778889999998777788999986654 88999999999999999999987543
No 120
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.10 E-value=23 Score=24.87 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
++.++..|..+.+....+...++..+..+.. .+...-.++..|+..+..++.+|..+..
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~------~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEE------RSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666555432 3456677888888888888888877764
No 121
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=72.04 E-value=2 Score=34.55 Aligned_cols=45 Identities=27% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhC-----CCCHHHHHHHHhhcCCCCCccccc
Q 027291 158 IEVAHAAANRWTDNIFTLQQWCSNNF-----PQAKEELEQMYKDVGIPEDFDYLE 207 (225)
Q Consensus 158 ~~~~k~aanrwTDNI~~l~~~~~kk~-----~~~~~~~~~l~~~fgIp~d~dy~e 207 (225)
+-.+..|||-. ||-.|.+++|+.. |.++++ ||+-||||.||--=|
T Consensus 106 LfeLi~AAnyL--dIk~Lldl~c~~vA~~ikgktpee---iR~~f~I~nd~t~eE 155 (169)
T 3v7d_A 106 LYEIILAANYL--NIKPLLDAGCKVVAEMIRGRSPEE---IRRTFNIVNDFTPEE 155 (169)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHHTTCCHHH---HHHHHTCCCCCCHHH
T ss_pred HHHHHHHHHHh--CcHHHHHHHHHHHHHHHcCCCHHH---HHHHcCCCCCCCHHH
Confidence 44466677755 6788888888865 888888 678999999975433
No 122
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=71.59 E-value=1.6 Score=39.39 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=31.5
Q ss_pred hcHHHHHHHhhhcCccccccccceeeEEcccchh
Q 027291 44 QSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCA 77 (225)
Q Consensus 44 ~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~ 77 (225)
-.+.+.++.||.+|+|..||+-+.|.=|.|||..
T Consensus 227 ~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~ 260 (359)
T 1m6e_X 227 QLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPT 260 (359)
T ss_dssp HHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSH
T ss_pred HHHHHHHHHHHHccccchhhhhccCCCccCCCHH
Confidence 4689999999999999999999999999999964
No 123
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=71.55 E-value=24 Score=28.48 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=48.6
Q ss_pred CCCCCCCHH--HHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 2 SKKRGLSLE--EKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 2 m~~KglS~e--EKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
||+ |+|.. |-+.+||+++. .-+=+.-+ ++.+-|++--.|.=+|-.|--||+|..-|+|-.. |||..
T Consensus 1 MPr-k~Td~v~erk~~ILE~Lk--~G~~~t~~---Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~a-yw~L~ 68 (165)
T 2vxz_A 1 MPI-GHSREVLVRLRDILALLA--DGCKTTSL---IQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVA-LVCLS 68 (165)
T ss_dssp -----CCHHHHHHHHHHHHHHT--TCCEEHHH---HHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEE-EEESC
T ss_pred CCc-chhHHHHHHHHHHHHHHH--hCCccHHH---HHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEE-EEEec
Confidence 444 36644 67889999998 33333333 3334699988999999999999999999999987 79994
No 124
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=71.32 E-value=15 Score=26.80 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc--cceeeEEcccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI--GTSVYFWSLPS 75 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi--GssN~YWsFps 75 (225)
-|||..+ -.||.++.... ..+.+||-... |++..+|-.+|..|++.|+|..... +.-.+|.+...
T Consensus 33 ~~l~~~~--~~iL~~l~~~~-~~~~~ela~~l---~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~ 99 (142)
T 2bv6_A 33 YNLTYPQ--FLVLTILWDES-PVNVKKVVTEL---ALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTD 99 (142)
T ss_dssp HTCCHHH--HHHHHHHHHSS-EEEHHHHHHHT---TCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECH
T ss_pred cCCCHHH--HHHHHHHHHcC-CcCHHHHHHHH---CCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEECh
Confidence 3677654 56888887765 46888887766 8899999999999999999998765 23334444443
No 125
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=70.89 E-value=21 Score=33.49 Aligned_cols=34 Identities=21% Similarity=0.063 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
...+..+...++.+++.++.+...+..+|...+.
T Consensus 39 ~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 39 IIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555666666666666666666655544
No 126
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.58 E-value=75 Score=30.28 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcH---HHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKG-REESD---EREEALEELK-AVELKHIELKDEMGQYADNDPAAFEAMK 155 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~-r~~~~---eR~~ll~~l~-~L~~~~~~l~~el~~~~~~Dp~~i~~~k 155 (225)
+.+.|++|..+++++.+...+...-+...... |..-. +-.....++. +|+..+..|+.++..-- ..|..|+
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl----snIrvLQ 137 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV----QHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 44556666666666655555544444433321 22111 1122444444 77778888877776543 5688888
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHh------hCCCCHHHHHHHHhhc
Q 027291 156 NAIEVAHAAANRWTDNIFTLQQWCSN------NFPQAKEELEQMYKDV 197 (225)
Q Consensus 156 ~~~~~~k~aanrwTDNI~~l~~~~~k------k~~~~~~~~~~l~~~f 197 (225)
..++..+..+.|.-=.|.+-+.||+. -|-||-+.-+.+.+++
T Consensus 138 snLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Confidence 88999999999999999999999986 3467766655555554
No 127
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=70.39 E-value=31 Score=25.69 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
|||.. .-.||.++.... .-+..||-+.. ||+..+|--+|+.|++.|+|...+.
T Consensus 41 ~lt~~--~~~iL~~l~~~~-~~t~~ela~~l---~is~~tvs~~l~~Le~~Gli~r~~~ 93 (154)
T 2eth_A 41 DMKTT--ELYAFLYVALFG-PKKMKEIAEFL---STTKSNVTNVVDSLEKRGLVVREMD 93 (154)
T ss_dssp HSBHH--HHHHHHHHHHHC-CBCHHHHHHHT---TSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHH--HHHHHHHHHHcC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 56654 356788887755 46888886654 7899999999999999999988654
No 128
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=69.89 E-value=18 Score=22.75 Aligned_cols=44 Identities=30% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 101 ELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 101 ~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
.++..++..++.--..++-..+-.+++.|++.+..|+..|+.+.
T Consensus 4 alkselqalkkegfspeelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555433345666777788888888888888777653
No 129
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=69.83 E-value=9.8 Score=27.45 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=37.7
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
-+||..+. ...-+..||-+..| ||++.+|-..|+.|.+.|+|.....
T Consensus 17 ~~IL~~L~--~~~~~~~eLa~~l~--~is~~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 17 XVILXHLT--HGKKRTSELKRLMP--NITQKMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp HHHHHHHT--TCCBCHHHHHHHCT--TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHH--hCCCCHHHHHHHhc--CCCHHHHHHHHHHHHHCCCEEEeec
Confidence 45676665 34567888887765 8999999999999999999998766
No 130
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=69.77 E-value=15 Score=28.37 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc-------ccccce--e-eEEcccch
Q 027291 8 SLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK-------DKIGTS--V-YFWSLPSC 76 (225)
Q Consensus 8 S~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~-------EKiGss--N-~YWsFps~ 76 (225)
.+++...+||.+++.... -+.+||-+. -|++..+|-..|+.|.+.|+|.. .++|-. . +.|..+..
T Consensus 7 ~ld~~~~~il~~L~~~~~-~s~~ela~~---lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~ 81 (162)
T 2p5v_A 7 TLDKTDIKILQVLQENGR-LTNVELSER---VALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKA 81 (162)
T ss_dssp CCCHHHHHHHHHHHHCTT-CCHHHHHHH---HTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEECSS
T ss_pred CCCHHHHHHHHHHHHcCC-CCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEEcCC
Confidence 355666799999988765 577877554 48999999999999999999974 577854 2 23455543
No 131
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=69.54 E-value=34 Score=25.89 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHHHhhc-cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc--eeeEEcccchh
Q 027291 4 KRGLSLEEKRGKILEIFYES-QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT--SVYFWSLPSCA 77 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~-~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs--sN~YWsFps~~ 77 (225)
+-|||..+ -.||.+++.. ...-+.+||-... ||...+|--+|..|+..|+|....... =.++.++....
T Consensus 41 ~~glt~~q--~~vL~~l~~~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G 112 (168)
T 3u2r_A 41 QFELSAQQ--YNTLRLLRSVHPEGMATLQIADRL---ISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAG 112 (168)
T ss_dssp TTTCCHHH--HHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHH
T ss_pred hcCCCHHH--HHHHHHHHhcCCCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHH
Confidence 34788765 5688888886 4678999987665 889999999999999999999876542 23444444433
No 132
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.33 E-value=30 Score=25.20 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
.+.++..|+-+.+....+...++..+..+. ..+..+-.++..|+..+..++.++..+...
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e------~~~~~~E~ei~sL~kKiq~lE~eld~~~e~ 66 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAE------DRCKQLEEEQQGLQKKLKGTEDEVEKYSES 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544442 244567778888888888888888887753
No 133
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.19 E-value=55 Score=37.67 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=10.2
Q ss_pred HHHHHhhhhhHHHHHH
Q 027291 162 HAAANRWTDNIFTLQQ 177 (225)
Q Consensus 162 k~aanrwTDNI~~l~~ 177 (225)
-..-.||+..+..+..
T Consensus 2083 ~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2083 NSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHH
Confidence 3344689887776653
No 134
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=68.95 E-value=2.3 Score=33.02 Aligned_cols=47 Identities=26% Similarity=0.233 Sum_probs=30.2
Q ss_pred hCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhC-----CCCHHHHHHHHhhcCCCCCc
Q 027291 145 DNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNF-----PQAKEELEQMYKDVGIPEDF 203 (225)
Q Consensus 145 ~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~-----~~~~~~~~~l~~~fgIp~d~ 203 (225)
+.|++.+ ..+..|||-. ||-.|.++|++.. |.++++ ||+.||||.||
T Consensus 88 ~vd~~~l-------~eLi~AAnyL--~I~~Lldl~c~~vA~~ikgkt~ee---iR~~f~I~~d~ 139 (141)
T 1fs1_B 88 KVDQGTL-------FELILAANYL--DIKGLLDVTCKTVANMIKGKTPEE---IRKTFNIKNDF 139 (141)
T ss_dssp CSCHHHH-------HHHHHHHHHH--TCHHHHHHHHHHHHHHHTTCCHHH---HHHHTC-----
T ss_pred hCCHHHH-------HHHHHHHHHH--hhhHHHHHHHHHHHHHHcCCCHHH---HHHHcCCCCCC
Confidence 4576664 4466777766 5778888888754 778877 67899999997
No 135
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=68.23 E-value=23 Score=27.05 Aligned_cols=53 Identities=21% Similarity=0.215 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
|||..+ -.||.++.... .-+.+||-... ||+..+|--+|+.|++.|+|.....
T Consensus 42 ~lt~~~--~~iL~~L~~~~-~~t~~eLa~~l---~is~~tvs~~l~~Le~~GlV~r~~~ 94 (168)
T 2nyx_A 42 NITIPQ--FRTLVILSNHG-PINLATLATLL---GVQPSATGRMVDRLVGAELIDRLPH 94 (168)
T ss_dssp SCCHHH--HHHHHHHHHHC-SEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHH--HHHHHHHHHcC-CCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEeccC
Confidence 566653 56788887755 46888886655 8999999999999999999988654
No 136
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=68.10 E-value=12 Score=28.27 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc-------ccccce
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK-------DKIGTS 67 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~-------EKiGss 67 (225)
++.+.+||..++... --+..||-+. -|++..+|-..|+.|.+.|+|.. .+.|-.
T Consensus 2 d~~~~~il~~L~~~~-~~~~~ela~~---lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~ 62 (150)
T 2pn6_A 2 DEIDLRILKILQYNA-KYSLDEIARE---IRIPKATLSYRIKKLEKDGVIKGYYAYINPASLNLD 62 (150)
T ss_dssp CHHHHHHHHHHTTCT-TSCHHHHHHH---HTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCC
T ss_pred ChHHHHHHHHHHHcC-CCCHHHHHHH---HCcCHHHHHHHHHHHHHCCcEEEEEeecCHHHhCCc
Confidence 356778999998764 4677776554 48999999999999999999975 678854
No 137
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=68.03 E-value=12 Score=29.54 Aligned_cols=63 Identities=21% Similarity=0.454 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc-------ccccce--eeE-Ecccc
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK-------DKIGTS--VYF-WSLPS 75 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~-------EKiGss--N~Y-WsFps 75 (225)
+++...+||..++.... -+..||=+. -|++..+|-.-|+.|.+.|+|.. .+.|-. .|+ |.++.
T Consensus 25 ld~~d~~IL~~L~~~~~-~s~~eLA~~---lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~~ 97 (171)
T 2e1c_A 25 LDEIDKKIIKILQNDGK-APLREISKI---TGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKA 97 (171)
T ss_dssp CCHHHHHHHHHHHHCTT-CCHHHHHHH---HTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECT
T ss_pred CCHHHHHHHHHHHHcCC-CCHHHHHHH---HCcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEECc
Confidence 45667799999998653 577776443 58999999999999999999975 788964 233 46664
No 138
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=67.21 E-value=9.8 Score=27.41 Aligned_cols=33 Identities=6% Similarity=0.072 Sum_probs=27.8
Q ss_pred HhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 33 EKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 33 EK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
-.+|...|+++-+|..++..|++-|+|....-|
T Consensus 24 t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~~ 56 (95)
T 1r7j_A 24 TRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQ 56 (95)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHCCCeEEECCe
Confidence 344555899999999999999999999988654
No 139
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=67.15 E-value=47 Score=26.54 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
...+..|+.++..++.++..+...+..-.+ .=..+..++..|+-+...++..+.++.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K------~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNK------NTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777777777766643321 112333445555555555555544444
No 140
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=67.10 E-value=34 Score=25.01 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+-|||..+ -.||.++.... .-+..||-+.. |++..+|--+|+.|++.|+|.....
T Consensus 37 ~~~l~~~~--~~iL~~l~~~~-~~t~~ela~~l---~~~~~tvs~~l~~Le~~Glv~r~~~ 91 (150)
T 2rdp_A 37 NYPITPPQ--FVALQWLLEEG-DLTVGELSNKM---YLACSTTTDLVDRMERNGLVARVRD 91 (150)
T ss_dssp TSSSCHHH--HHHHHHHHHHC-SBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hCCCCHHH--HHHHHHHHHcC-CCCHHHHHHHH---CCCchhHHHHHHHHHHCCCeeecCC
Confidence 34777754 57888887754 46888887654 8999999999999999999988654
No 141
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=66.58 E-value=6.4 Score=29.74 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHhh---ccCc-cchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 5 RGLSLEEKRGKILEIFYE---SQDF-YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e---~~~~-ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
-|||..|=. +|-++.. ...+ -|. +.+|...|+++.+|..+|+.|++.|+|..+.
T Consensus 28 lgLt~~e~~--vll~L~~~~~~~~~~ps~---~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELV--LLLHMQSFFEEGVLFPTP---AELAERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp TTCCHHHHH--HHHHHHHHHTTTCSSCCH---HHHHHTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred cCCCHHHHH--HHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 478888775 3333332 2333 454 4456668999999999999999999998753
No 142
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=66.42 E-value=12 Score=28.41 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc-------cccccce
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL-------KDKIGTS 67 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~-------~EKiGss 67 (225)
+++...+||.+++... .-+..||=+. -|++..+|-..|+.|.+.|+|. -.+.|-.
T Consensus 5 ld~~~~~iL~~L~~~~-~~s~~ela~~---lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~ 66 (150)
T 2w25_A 5 LDDIDRILVRELAADG-RATLSELATR---AGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHL 66 (150)
T ss_dssp CCHHHHHHHHHHHHCT-TCCHHHHHHH---HTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCC
T ss_pred cCHHHHHHHHHHHHcC-CCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEEEEeccChhHcccc
Confidence 3455678999998764 4678877554 4899999999999999999994 6678864
No 143
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=66.13 E-value=35 Score=24.74 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=41.2
Q ss_pred HHHHHHHhhccCccc--hHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccc
Q 027291 14 GKILEIFYESQDFYL--LKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPS 75 (225)
Q Consensus 14 ~ril~~f~e~~~~yt--lKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps 75 (225)
-.||..+. ....+ ..||-+..| ||++.+|-..|..|.++|+|..... -..+++...
T Consensus 30 l~IL~~L~--~g~~~~~~~eL~~~l~--gis~~~ls~~L~~Le~~GlV~r~~~--r~~~y~LT~ 87 (111)
T 3df8_A 30 MLIISVLG--NGSTRQNFNDIRSSIP--GISSTILSRRIKDLIDSGLVERRSG--QITTYALTE 87 (111)
T ss_dssp HHHHHHHT--SSSSCBCHHHHHHTST--TCCHHHHHHHHHHHHHTTSEEEEES--SSEEEEECH
T ss_pred HHHHHHHh--cCCCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHCCCEEEeec--CcEEEEECc
Confidence 45666666 33445 888877665 7999999999999999999998766 334445543
No 144
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=65.64 E-value=20 Score=32.81 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
....+..+...++.+++.++.+...+..+|.. ...+++.+++++..+|..+++.++.++..+
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPK-----APPEEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555554432 112345566666666666666555555443
No 145
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=65.63 E-value=6.9 Score=35.28 Aligned_cols=55 Identities=15% Similarity=0.316 Sum_probs=41.1
Q ss_pred HHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEccc
Q 027291 15 KILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLP 74 (225)
Q Consensus 15 ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFp 74 (225)
++++++.+.. +++.+++.+.+ |++..|+.-.|..|++.|++..-+.|-+ -+|.+|
T Consensus 301 ~ll~~l~~~p-~~t~~~~~~~~---~~S~~TA~r~L~~L~e~GiL~~~~~gR~-~~y~~~ 355 (373)
T 3eqx_A 301 ELVQVIFEQP-YCRIQNLVESG---LAKRQTASVYLKQLCDIGVLEEVQSGKE-KLFVHP 355 (373)
T ss_dssp HHHHHHHHCS-EEEHHHHHHTS---SSCHHHHHHHHHHHHHTTSCEEC--CCS-CEEECH
T ss_pred HHHHHHHHCC-CccHHHHHHHh---CcCHHHHHHHHHHHHHCCcEEEeCCCCc-eEeehH
Confidence 4666666544 56888877654 8899999999999999999987776754 566776
No 146
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=64.69 E-value=42 Score=25.17 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+-|||..+ -.||.++.... --+.+||-... ||...+|--+|..|++.|+|.....
T Consensus 41 ~~glt~~q--~~iL~~l~~~~-~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~r~~~ 95 (162)
T 3k0l_A 41 ALEISLPQ--FTALSVLAAKP-NLSNAKLAERS---FIKPQSANKILQDLLANGWIEKAPD 95 (162)
T ss_dssp TTTCCHHH--HHHHHHHHHCT-TCCHHHHHHHH---TSCGGGHHHHHHHHHHTTSEEEEEC
T ss_pred hcCCCHHH--HHHHHHHHHCC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCcCeEecCC
Confidence 34788765 67888888765 56888886554 8999999999999999999987654
No 147
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=64.28 E-value=30 Score=24.65 Aligned_cols=31 Identities=6% Similarity=0.083 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKG 112 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~ 112 (225)
..++..+..+...++.++..++..++..+..
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~ 42 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAE 42 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777777776653
No 148
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=64.09 E-value=40 Score=24.67 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
+.++..|+.+.+....+...++..+..+. ..+..+-.++..|+..+..+..+|..+...
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e------~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAE------ERSKQLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555554444432 245677788888999999999888887753
No 149
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=64.03 E-value=4 Score=32.09 Aligned_cols=42 Identities=26% Similarity=0.236 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhC-----CCCHHHHHHHHhhcCCCCCcc
Q 027291 158 IEVAHAAANRWTDNIFTLQQWCSNNF-----PQAKEELEQMYKDVGIPEDFD 204 (225)
Q Consensus 158 ~~~~k~aanrwTDNI~~l~~~~~kk~-----~~~~~~~~~l~~~fgIp~d~d 204 (225)
+..+..|||.. ||-.|.++|++.. |.++++ ||+-||||.||-
T Consensus 99 l~eLl~AAnyL--~I~~Lld~~c~~va~~i~gkt~ee---ir~~f~I~~d~t 145 (159)
T 2ast_A 99 LFELILAANYL--DIKGLLDVTCKTVANMIKGKTPEE---IRKTFNIKNDFT 145 (159)
T ss_dssp HHHHHHHHHHH--TCHHHHHHHHHHHHHHHSSCCHHH---HHHHTTCCCCSC
T ss_pred HHHHHHHHHHH--hHHHHHHHHHHHHHHHHcCCCHHH---HHHHcCCCCCCC
Confidence 44467777766 5777888887743 788877 678999999974
No 150
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=63.96 E-value=13 Score=28.70 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHH--Hhhc-cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 6 GLSLEEKRGKILEI--FYES-QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 6 glS~eEKr~ril~~--f~e~-~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
|||..|=.- ++-+ |.++ ..|-+.. .+|..-|+++.+|-.+|+.|++.|+|..+
T Consensus 29 gLs~~E~~l-Ll~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 29 GLNETELIL-LLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp TCCHHHHHH-HHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHH-HHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 666665322 2222 2233 3455664 46677899999999999999999999985
No 151
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=63.88 E-value=28 Score=22.85 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhh
Q 027291 125 ELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTD 170 (225)
Q Consensus 125 ~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTD 170 (225)
++.+|..++..|..++..++. .+..++.++..+++.|.|-..
T Consensus 5 ki~~Lss~V~~L~~kVdqLss----dV~al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASN----DANAARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555553 355566677778887777553
No 152
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=63.81 E-value=12 Score=21.80 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 86 RKLESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 86 ~~l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
..|+++|..++++|+.|+=.|...+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444443
No 153
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=63.66 E-value=7 Score=32.79 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
+.++..=+|--+||++|.......++.||-.. .|+..-+|--+|+.|++.|+|..+
T Consensus 7 ~~~v~s~~r~l~iL~~l~~~~~~~~~~eia~~---~gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 7 RDYIQSIERGFAVLLAFDAQRPNPTLAELATE---AGLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp CCCCHHHHHHHHHHHTCSSSCSSCBHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccchHHHHHHHHHHHHHHhCCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEeC
Confidence 34677778999999999887788899998665 489999999999999999999887
No 154
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=63.62 E-value=9.1 Score=28.30 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 79 NQLRNVYRKLESDLQSSK---KRHTELVEQCNALKKGR-EESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~---~~i~~l~~~ie~~k~~r-~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
..++..+++|.+++...+ ..+.-|+..+.--+..- .+-..|..+-.+.++|..++..|+.++..+.
T Consensus 19 ~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 19 VAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555 23333443333322211 1123567777777888888888877766554
No 155
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=63.53 E-value=48 Score=25.45 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCc--cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDF--YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~--ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+-|||..+ -.||.+++..... -+..||-... ||+..+|--+|..|+..|+|.....
T Consensus 64 ~~glt~~~--~~iL~~L~~~~~~~~~t~~eLa~~l---~is~~tvs~~l~~Le~~GlV~r~~~ 121 (181)
T 2fbk_A 64 ASGLNAAG--WDLLLTLYRSAPPEGLRPTELSALA---AISGPSTSNRIVRLLEKGLIERRED 121 (181)
T ss_dssp TTTCCHHH--HHHHHHHHHHCCSSCBCHHHHHHHC---SCCSGGGSSHHHHHHHHTSEECCC-
T ss_pred HcCCCHHH--HHHHHHHHHcCCCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCcCEEecCC
Confidence 34777764 6788888887653 6889986654 8889999999999999999988654
No 156
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=62.96 E-value=39 Score=24.20 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+-|||..+ -.||.++.... .-+.+||-+. -|++..+|--+|+.|++.|+|.....
T Consensus 28 ~~~l~~~~--~~iL~~l~~~~-~~~~~ela~~---l~~~~~tvs~~l~~L~~~gli~r~~~ 82 (139)
T 3bja_A 28 QYDISYVQ--FGVIQVLAKSG-KVSMSKLIEN---MGCVPSNMTTMIQRMKRDGYVMTEKN 82 (139)
T ss_dssp GGTCCHHH--HHHHHHHHHSC-SEEHHHHHHH---CSSCCTTHHHHHHHHHHTTSEEEEEC
T ss_pred hcCCCHHH--HHHHHHHHHcC-CcCHHHHHHH---HCCChhHHHHHHHHHHHCCCeeeccC
Confidence 34777654 56888887754 4688888665 48899999999999999999987644
No 157
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=61.93 E-value=19 Score=27.33 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc-------ccccce
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK-------DKIGTS 67 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~-------EKiGss 67 (225)
+++...+||..++... .-+..||-+. -|++..+|-..|+.|.+.|+|.. .+.|-.
T Consensus 6 ld~~d~~il~~L~~~~-~~s~~ela~~---lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~ 67 (152)
T 2cg4_A 6 IDNLDRGILEALMGNA-RTAYAELAKQ---FGVSPETIHVRVEKMKQAGIITGARIDVSPKQLGYD 67 (152)
T ss_dssp CCHHHHHHHHHHHHCT-TSCHHHHHHH---HTSCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCC
T ss_pred cCHHHHHHHHHHHHcC-CCCHHHHHHH---HCcCHHHHHHHHHHHHHcCCcceEEEecCHHHcCCe
Confidence 3455668999998874 4577776544 58999999999999999999974 678864
No 158
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=61.79 E-value=2.4 Score=38.70 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=31.2
Q ss_pred cHHHHHHHhhhcCccccccccceeeEEcccchh
Q 027291 45 SVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCA 77 (225)
Q Consensus 45 ~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~ 77 (225)
.+.++++.||.+|+|..+|+.+.|+=|.|||..
T Consensus 240 ~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~ 272 (384)
T 2efj_A 240 LLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTE 272 (384)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHH
T ss_pred HHHHHHHHHHHhCCcchhhhcccCCcccCCCHH
Confidence 799999999999999999999999999999963
No 159
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=61.78 E-value=48 Score=24.82 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
|||..+ -.||.+++... .-+..||-.. -|+...+|--+|..|++.|+|.....
T Consensus 50 glt~~q--~~vL~~l~~~~-~~t~~eLa~~---l~~~~~~vs~~l~~Le~~Glv~r~~~ 102 (161)
T 3e6m_A 50 KLPTPK--LRLLSSLSAYG-ELTVGQLATL---GVMEQSTTSRTVDQLVDEGLAARSIS 102 (161)
T ss_dssp TCCHHH--HHHHHHHHHHS-EEEHHHHHHH---TTCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred CCCHHH--HHHHHHHHhCC-CCCHHHHHHH---HCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 677653 67888887765 4588888654 58999999999999999999998765
No 160
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=61.67 E-value=19 Score=26.92 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.0
Q ss_pred hccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 35 LGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 35 ~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
+|..-||+..+|.+.++.|+++|+|...
T Consensus 43 La~~~~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 43 MGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 3444699999999999999999999765
No 161
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=61.47 E-value=27 Score=31.68 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
+..++.++..++++..++++.|+.+.. +...+-+++.+.+...+.|..++..++.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTEL------GMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555555555555555555554433 2334444455555556666666666543
No 162
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=61.28 E-value=22 Score=27.37 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=60.4
Q ss_pred CCCCCCHHHHHHHHHHHHhh-ccCccch-HHHHhhccCCCcchhcHHHHHHHhhhcCccccccc-----cceeeEEcccc
Q 027291 3 KKRGLSLEEKRGKILEIFYE-SQDFYLL-KELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI-----GTSVYFWSLPS 75 (225)
Q Consensus 3 ~~KglS~eEKr~ril~~f~e-~~~~ytl-KELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi-----GssN~YWsFps 75 (225)
+++.++.+.-.--||.++.+ ....|.+ ++|+.....-+|+..+|=-+|..|.++|+|..... |-.--|++.-.
T Consensus 26 ~~~~l~~~~~~~~IL~lL~~~~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~ 105 (138)
T 2e1n_A 26 PPHYLSKELAVCYVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQ 105 (138)
T ss_dssp CCEECCHHHHHHHHHHHHTTSCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESC
T ss_pred ccccccchHHHHHHHHHHHhCCCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECH
Confidence 34557777777778888864 3456665 57887764457889999999999999999998753 34567788887
Q ss_pred hhhhhHHHHHH
Q 027291 76 CAGNQLRNVYR 86 (225)
Q Consensus 76 ~~~~~~~~~~~ 86 (225)
.....+.....
T Consensus 106 ~Gr~~l~~~~~ 116 (138)
T 2e1n_A 106 ANDDRSRDLAQ 116 (138)
T ss_dssp SCCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77665544433
No 163
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=61.20 E-value=25 Score=27.88 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhcc-CccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc-------cceeeEEcccchhhhhH
Q 027291 11 EKRGKILEIFYESQ-DFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI-------GTSVYFWSLPSCAGNQL 81 (225)
Q Consensus 11 EKr~ril~~f~e~~-~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi-------GssN~YWsFps~~~~~~ 81 (225)
.-|.+||..+..+. ...+..||-...| +|+.-+|--.|..|++.|+|..-.. |----||+.-.......
T Consensus 29 ~tR~~IL~~Ll~~p~~~~ta~eL~~~l~--~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 29 ETRLDVLHQILAQPDGVLSVEELLYRNP--DETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHHSTTSCBCHHHHHHHCT--TSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 45778889887775 4679999876543 4889999999999999999986433 33445777776665554
No 164
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=61.09 E-value=6.3 Score=33.29 Aligned_cols=56 Identities=11% Similarity=0.145 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
+.+++.=+|--+||++|.......++.||-.. .|+..-+|--+|+.|++.|+|..+
T Consensus 14 ~~~v~sl~r~l~iL~~l~~~~~~~~~~eia~~---~gl~~stv~r~l~tL~~~G~v~~~ 69 (265)
T 2ia2_A 14 PDYVQSLARGLAVIRCFDHRNQRRTLSDVARA---TDLTRATARRFLLTLVELGYVATD 69 (265)
T ss_dssp --CCHHHHHHHHHHHTCCSSCSSEEHHHHHHH---HTCCHHHHHHHHHHHHHHTSEEES
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEec
Confidence 34566677888999999877778899997554 589999999999999999999887
No 165
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=60.98 E-value=43 Score=24.05 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
|||..+ -.||.++.... .-+..||-.. -||+..+|--+|+.|++.|+|.....
T Consensus 33 ~lt~~~--~~iL~~l~~~~-~~t~~ela~~---l~~s~~~vs~~l~~Le~~glv~r~~~ 85 (142)
T 2fbi_A 33 GLTEQQ--WRVIRILRQQG-EMESYQLANQ---ACILRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp TCCHHH--HHHHHHHHHHC-SEEHHHHHHH---TTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHH--HHHHHHHHHcC-CCCHHHHHHH---HCCCHhHHHHHHHHHHHCCCEEeecC
Confidence 677654 56788887755 3688888655 48999999999999999999987644
No 166
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.64 E-value=43 Score=23.95 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
.++..+++.+-..|.-++-++.+|+++-..+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444443
No 167
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=59.80 E-value=13 Score=28.13 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=41.5
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc--eeeEEcccch
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT--SVYFWSLPSC 76 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs--sN~YWsFps~ 76 (225)
-.||..+. ...-+..||-+..+ ||+..+|-..|..|.++|+|.....+. -.+|++....
T Consensus 38 l~IL~~L~--~g~~~~~eLa~~l~--gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~ 98 (131)
T 1yyv_A 38 VLILVALR--DGTHRFSDLRRXMG--GVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPL 98 (131)
T ss_dssp HHHHHHGG--GCCEEHHHHHHHST--TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHH
T ss_pred HHHHHHHH--cCCCCHHHHHHHhc--cCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECcc
Confidence 34666665 34567778877665 799999999999999999999876632 2334444433
No 168
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=59.79 E-value=9.8 Score=28.44 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=34.4
Q ss_pred HHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCcccccccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
=+||..+..... .+.|+ -||+--.--++++.|+|+|+|..-.+.
T Consensus 8 YkIL~~L~~~~~--------~is~e~l~Ise~~~~~il~~L~d~GyI~Gv~~~ 52 (102)
T 2hgc_A 8 YAILKEIFEGNT--------PLSENDIGVTEDQFDDAVNFLKREGYIIGVHYS 52 (102)
T ss_dssp HHHHHHHHHHCS--------CCCHHHHTSCHHHHHHHHHHHHHHTSEECCEES
T ss_pred HHHHHHHHhCCC--------cCCHHhcCCCHHHHHHHHHHHHHCCCccceEEE
Confidence 478888888332 25566 599999999999999999999877653
No 169
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=59.44 E-value=42 Score=26.38 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 027291 84 VYRKLESDLQSSKK-RHTELVEQCNALKKGR--EESDEREEALEELKAVELKHIELKDEMGQYADNDPA 149 (225)
Q Consensus 84 ~~~~l~~~i~~~~~-~i~~l~~~ie~~k~~r--~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~ 149 (225)
-+++|+++++.++. +.-++-..+..+...- .+..+=...-++...++.++..|+..|..+.-.||.
T Consensus 10 g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~vid~~ 78 (158)
T 1grj_A 10 GAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVT 78 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECGG
T ss_pred HHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCeecCcc
Confidence 35678888888876 6777777888777632 333443444456777888899999999888877764
No 170
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=59.22 E-value=50 Score=24.24 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHhh-ccCccch-HHHHhhccCCCcchhcHHHHHHHhhhcCccccccc-----cceeeEEcccchhhh
Q 027291 7 LSLEEKRGKILEIFYE-SQDFYLL-KELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI-----GTSVYFWSLPSCAGN 79 (225)
Q Consensus 7 lS~eEKr~ril~~f~e-~~~~ytl-KELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi-----GssN~YWsFps~~~~ 79 (225)
|+.+=...-||.++.+ ....|.| +.|+...+--+|+.-+|=-+|..|.++|+|..... |-.--|++.......
T Consensus 18 l~~~l~~~~IL~lL~~~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~ 97 (115)
T 2dql_A 18 LCQEVAICYILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQH 97 (115)
T ss_dssp CCHHHHHHHHHHHHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHH
T ss_pred hhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHH
Confidence 5555555557888875 4566765 57877664367889999999999999999998753 334577788777766
Q ss_pred hHHHHHHHH
Q 027291 80 QLRNVYRKL 88 (225)
Q Consensus 80 ~~~~~~~~l 88 (225)
.+...+..+
T Consensus 98 ~l~~~~~~~ 106 (115)
T 2dql_A 98 QAEDLARLW 106 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655544433
No 171
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=59.07 E-value=43 Score=26.40 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhc-C-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 027291 84 VYRKLESDLQSSK-KRHTELVEQCNALKK-G-REESDEREEALEELKAVELKHIELKDEMGQYADNDP 148 (225)
Q Consensus 84 ~~~~l~~~i~~~~-~~i~~l~~~ie~~k~-~-r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp 148 (225)
-+++|+++++.+. .+..++.+.|..+.. | +.+..+=.+.-++...++.++..|+..|....-.||
T Consensus 10 g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~vid~ 77 (158)
T 2p4v_A 10 GYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDY 77 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCC
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCeecCC
Confidence 4567888888884 467777788887776 2 444444444556678888888888888887776665
No 172
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=59.04 E-value=16 Score=26.87 Aligned_cols=55 Identities=9% Similarity=0.182 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+-|||..+ -.||.+++... .-+..||-... ||+..+|--+|..|++.|+|.....
T Consensus 35 ~~~l~~~~--~~iL~~l~~~~-~~~~~~la~~l---~~~~~tvs~~l~~L~~~glv~r~~~ 89 (147)
T 1z91_A 35 KLNITYPQ--YLALLLLWEHE-TLTVKKMGEQL---YLDSGTLTPMLKRMEQQGLITRKRS 89 (147)
T ss_dssp TTCCCHHH--HHHHHHHHHHS-EEEHHHHHHTT---TCCHHHHHHHHHHHHHHTSEECCBC
T ss_pred HcCCCHHH--HHHHHHHHHCC-CCCHHHHHHHH---CCCcCcHHHHHHHHHHCCCEEeccC
Confidence 44788764 56788887755 56888887654 8999999999999999999988765
No 173
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=59.01 E-value=4.8 Score=31.94 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=38.1
Q ss_pred hhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 21 YESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 21 ~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+=+.--||-+||...+-++|+.+..|..||..|...|+|+=+.-
T Consensus 26 ~Ls~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rf 69 (162)
T 3dfg_A 26 LLVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRF 69 (162)
T ss_dssp HHHHSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHH
T ss_pred HhhchhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 33556789999999999999999999999999999999987653
No 174
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=58.73 E-value=18 Score=25.88 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=40.0
Q ss_pred HHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc--eeeEEcccch
Q 027291 15 KILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT--SVYFWSLPSC 76 (225)
Q Consensus 15 ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs--sN~YWsFps~ 76 (225)
.||..+. ...-+..||-+..+ ||+..+|-..|..|.+.|+|.....+. -..|++....
T Consensus 29 ~IL~~L~--~~~~~~~eL~~~l~--gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~ 88 (107)
T 2fsw_A 29 LIIFQIN--RRIIRYGELKRAIP--GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPL 88 (107)
T ss_dssp HHHHHHT--TSCEEHHHHHHHST--TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH
T ss_pred HHHHHHH--hCCcCHHHHHHHcc--cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECcc
Confidence 4555554 23456777766654 699999999999999999999776543 2344454443
No 175
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=58.72 E-value=24 Score=25.91 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+-|||..+ -.+|.+++.. ..-+.+||-+.. |+.+.+|--+|+.|++.|+|.....
T Consensus 31 ~~glt~~q--~~vL~~l~~~-~~~t~~eLa~~l---~~~~~tvs~~l~~L~~~Glv~r~~~ 85 (140)
T 3hsr_A 31 EYDLTYTG--YIVLMAIEND-EKLNIKKLGERV---FLDSGTLTPLLKKLEKKDYVVRTRE 85 (140)
T ss_dssp GGTCCHHH--HHHHHHSCTT-CEEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HcCCCHHH--HHHHHHHHHc-CCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCeEecCC
Confidence 34788765 6788888764 456888887665 7899999999999999999997754
No 176
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=58.51 E-value=58 Score=24.69 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=40.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
|||++ .+.+++|.+||+- -..+...+|....||.||-... -|+.+.+|+-|||+..-
T Consensus 1 ~M~~~-~~~~~~r~~Il~a------------A~~lf~~~G~~~~s~~~IA~~a---------Gvs~gtlY~yF~sKe~L 57 (194)
T 2nx4_A 1 GVPKL-VDHDERRRSITAA------------AWRLIAARGIEAANMRDIATEA---------GYTNGALSHYFAGKDEI 57 (194)
T ss_dssp CCCHH-HHHHHHHHHHHHH------------HHHHHHHHCTTTCCHHHHHHHH---------TCCHHHHHHHCSSHHHH
T ss_pred CCCCC-CCHHHHHHHHHHH------------HHHHHHhcCcccCCHHHHHHHh---------CCCcchHHHhCcCHHHH
Confidence 78764 5678888888753 2223333588889999887764 36778899999997654
No 177
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=58.37 E-value=21 Score=29.53 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
++.=+|--+||++|.+.....++.||-.. .|+..-+|--+|+.|++.|+|..+.
T Consensus 2 v~sl~r~l~iL~~l~~~~~~~s~~ela~~---~gl~~stv~r~l~~L~~~G~v~~~~ 55 (241)
T 2xrn_A 2 IQVIARAASIMRALGSHPHGLSLAAIAQL---VGLPRSTVQRIINALEEEFLVEALG 55 (241)
T ss_dssp -CHHHHHHHHHHHHHTCTTCEEHHHHHHH---TTSCHHHHHHHHHHHHTTTSEEECG
T ss_pred ccHHHHHHHHHHHHHhCCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 44456888999999988778899997654 4899999999999999999998874
No 178
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=58.16 E-value=2.6 Score=32.93 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
||.+.....+++|.+||+-- ..+...+|....||.||.... -|+.+.+|+-|||+..-
T Consensus 1 M~~~~~~~~~~~r~~Il~aA------------~~lf~~~G~~~~s~~~IA~~a---------GvskgtlY~~F~sKe~L 58 (210)
T 2xdn_A 1 MVRRTKEEAQETRAQIIEAA------------ERAFYKRGVARTTLADIAELA---------GVTRGAIYWHFNNKAEL 58 (210)
T ss_dssp ----CCHHHHHHHHHHHHHH------------HHHHHHHCSTTCCHHHHHHHH---------TCCTTHHHHHCSSHHHH
T ss_pred CCCchHHHHHHHHHHHHHHH------------HHHHHHcCcccCcHHHHHHHH---------CCChHHHHHHhCCHHHH
Confidence 77766556778888887532 223333577888888887765 36788899999997543
No 179
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=57.97 E-value=2.1 Score=36.85 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccc
Q 027291 11 EKRGKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVL 60 (225)
Q Consensus 11 EKr~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~ 60 (225)
..+.+||+++++...- .=--+.-++.+ .|+....|++.|+.|+++|.|=
T Consensus 207 ~~~~~Vl~~i~~~~~~-~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IY 256 (270)
T 2pi2_A 207 VAQNQVLNLIKACPRP-EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY 256 (270)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCc-cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEe
Confidence 4568899999986421 11123456666 5788999999999999999983
No 180
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=57.56 E-value=42 Score=25.08 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=25.8
Q ss_pred hccCCCcchhcHHHHHHHhhhcCccccc-cccc
Q 027291 35 LGPKKGVITQSVKDVVQSLVDDDLVLKD-KIGT 66 (225)
Q Consensus 35 ~~pKkGI~~~~VKdvlQ~LVDDglV~~E-KiGs 66 (225)
+|..-||+..+|.+.++.|.++|+|... ..|+
T Consensus 44 La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~ 76 (134)
T 4ham_A 44 FASRIGVNPNTVSKAYQELERQEVIITVKGKGT 76 (134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEE
Confidence 3444699999999999999999999865 3443
No 181
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.29 E-value=60 Score=24.52 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
...++..+..|+.+++.++.....|+..|..+.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344556666777777777777777777766553
No 182
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.19 E-value=87 Score=28.80 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
+...+...+..+++++...+..++..+..+++.+.
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45567788888888888888888888888887654
No 183
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=57.13 E-value=63 Score=24.68 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=9.1
Q ss_pred HHHhhcCCCCCc
Q 027291 192 QMYKDVGIPEDF 203 (225)
Q Consensus 192 ~l~~~fgIp~d~ 203 (225)
.+-+.||||.++
T Consensus 99 ~mLk~L~Id~~l 110 (122)
T 3viq_A 99 MFLNQFGVPVHL 110 (122)
T ss_dssp HHHHHTTCCTTT
T ss_pred HHHHHcCCCHHH
Confidence 367789999774
No 184
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=56.94 E-value=51 Score=23.63 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+-|||..+ -.+|.++.... .-+..+|-.. -|++..+|--+|+.|+..|+|.....
T Consensus 29 ~~~lt~~~--~~iL~~l~~~~-~~~~~~la~~---l~~~~~tvs~~l~~L~~~gli~r~~~ 83 (138)
T 1jgs_A 29 PLDITAAQ--FKVLCSIRCAA-CITPVELKKV---LSVDLGALTRMLDRLVCKGWVERLPN 83 (138)
T ss_dssp TTTSCHHH--HHHHHHHHHHS-SBCHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hcCCCHHH--HHHHHHHHhcC-CCCHHHHHHH---HCCChHHHHHHHHHHHHCCCEEecCC
Confidence 45788765 46777777654 3578887533 68999999999999999999988654
No 185
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.67 E-value=60 Score=24.60 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 78 GNQLRNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 78 ~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
...++..+..|+.+++.++.....|+..|..+..
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445666777777777777777777777765543
No 186
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=56.62 E-value=62 Score=24.50 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=35.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
|++++.-..+++|.+||+-- ..+...+|....||.||.+.. -|+.+.+|+-|||+..-
T Consensus 4 M~r~~~~~~~~~r~~Il~aA------------~~lf~~~G~~~~s~~~Ia~~a---------gvs~~t~Y~yF~sKe~L 61 (203)
T 3ccy_A 4 MARTRSADYENIRDTIIERA------------AAMFARQGYSETSIGDIARAC---------ECSKSRLYHYFDSKEAV 61 (203)
T ss_dssp --------CTTHHHHHHHHH------------HHHHHHTCTTTSCHHHHHHHT---------TCCGGGGTTTCSCHHHH
T ss_pred ccccchhhhhhHHHHHHHHH------------HHHHHHcCcccCCHHHHHHHh---------CCCcCeeeeeeCCHHHH
Confidence 45555556678899997732 223333588889999987764 36778999999997643
No 187
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=56.52 E-value=12 Score=28.91 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=46.3
Q ss_pred HHHHHHHhh-ccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHH
Q 027291 14 GKILEIFYE-SQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKL 88 (225)
Q Consensus 14 ~ril~~f~e-~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l 88 (225)
-++|-++.. .....+.+|| |..-||++..|..+++.|+..|+|.+.+ |.+-|.-+-|.... .+..-+..+
T Consensus 17 l~~L~~La~~~~~~~~~~~i---A~~~~i~~~~l~kil~~L~~~Glv~s~r-G~GGy~L~~~p~~I-tl~dVi~a~ 87 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYM---AESVNTNPVVIRKIMSYLKQAGFVYVNR-GPGGAGLLKDLHEI-TLLDVYHAV 87 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHH---HHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGGC-BHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCcEEEcc-CCCceEeCCChhhC-cHHHHHHHH
Confidence 455666654 2457787765 4457999999999999999999999876 66666666665443 333334333
No 188
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=56.44 E-value=48 Score=23.13 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 89 ESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 89 ~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
..+.+..+..+..++..+..++. +-...+.++++|-.-.-.|..|+..|..
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~------e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRA------RMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555543 3345567777777777778888888874
No 189
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=56.42 E-value=37 Score=25.03 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
+-|||..+ -.||.++.... ..+..||-... ||+..+|--+|+.|++.|+|.....
T Consensus 42 ~~~l~~~~--~~iL~~l~~~~-~~t~~ela~~l---~~s~~tvs~~l~~Le~~glv~r~~~ 96 (153)
T 2pex_A 42 ALDLTYPQ--YLVMLVLWETD-ERSVSEIGERL---YLDSATLTPLLKRLQAAGLVTRTRA 96 (153)
T ss_dssp TTTCCHHH--HHHHHHHHHSC-SEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HCCCCHHH--HHHHHHHHhCC-CcCHHHHHHHh---CCCcccHHHHHHHHHHCCCEeecCC
Confidence 45787754 56788887754 46888886654 7999999999999999999998654
No 190
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=56.34 E-value=23 Score=26.50 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=26.0
Q ss_pred ccCCCcchhcHHHHHHHhhhcCccccccccceee
Q 027291 36 GPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVY 69 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~ 69 (225)
|..-||+..+|.+.++.|..+|+|... -|.+.|
T Consensus 42 a~~~~vSr~tvr~Al~~L~~~Gli~~~-~g~G~~ 74 (126)
T 3by6_A 42 ALQEKINPNTVAKAYKELEAQKVIRTI-PGKGTF 74 (126)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEE-TTTEEE
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEEe-cCCeEE
Confidence 333689999999999999999999764 355543
No 191
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.03 E-value=1.5e+02 Score=34.20 Aligned_cols=90 Identities=11% Similarity=0.162 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH---
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNA--- 157 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~--- 157 (225)
.+..++..++++++.+.++++++++|+..+. +-.+.+++.+.|+.+.+..+..|..-.. -|..+-.+
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~------~~~~~~~ek~~L~~e~~~~~~kl~rA~~----Li~gL~~Ek~R 2088 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKE------EYATLIRETEQIKTESSKVKNKVDRSIA----LLDNLNSERGR 2088 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhcccc
Confidence 3444444444455555555555555555443 2233444444444444444444433222 23333333
Q ss_pred ----HHHHHHHHHhhhhhHHHHHHHHH
Q 027291 158 ----IEVAHAAANRWTDNIFTLQQWCS 180 (225)
Q Consensus 158 ----~~~~k~aanrwTDNI~~l~~~~~ 180 (225)
+..+......-+.++.+.-.|+.
T Consensus 2089 W~~~~~~l~~~~~~L~GD~LLaaafis 2115 (3245)
T 3vkg_A 2089 WEQQSENFNTQMSTVVGDVVLASAFLA 2115 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444444444555554444443
No 192
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=55.88 E-value=58 Score=23.90 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK 61 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~ 61 (225)
|||..+ -.||.+++... .-+..||-+.. |++..+|--+|..|++.|+|..
T Consensus 38 ~lt~~~--~~iL~~l~~~~-~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 38 GLTIQQ--LAMINVIYSTP-GISVADLTKRL---IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TCCHHH--HHHHHHHHHST-TEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHH--HHHHHHHHHCC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEe
Confidence 677654 57888888764 46888877665 8899999999999999999987
No 193
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=55.72 E-value=10 Score=34.69 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
....+..+...++.+++.++.+...+..+|...+.
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~ 65 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKR 65 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555556666666777766666666665444
No 194
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=55.66 E-value=16 Score=25.43 Aligned_cols=61 Identities=16% Similarity=0.336 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccch
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSC 76 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~ 76 (225)
++.++=+..|...| +.+.+|+||+|...... -.+-+||+|... -...|-|...-.|....+
T Consensus 4 ~~~~~l~d~lF~~F-ek~~yw~lK~L~~~t~Q---P~~yLKeiL~~I-----a~~~k~g~~~~~weLKpE 64 (69)
T 1bby_A 4 ADKQHVLDMLFSAF-EKHQYYNLKDLVDITKQ---PVVYLKEILKEI-----GVQNVKGIHKNTWELKPE 64 (69)
T ss_dssp HHHHHHHHHHHHHH-HHCSCBCHHHHHHHCCS---CHHHHHHHHHHH-----CCCBCCTTCCCBBCCCCS
T ss_pred CCHHHHHHHHHHHH-hhcCCCcHHHHHHHHcC---cHHHHHHHHHHH-----HHHHcCCCCCCeeeCcHH
Confidence 34445556677777 66799999999998876 457788888876 344677877778887654
No 195
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=55.46 E-value=5.4 Score=29.40 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=27.4
Q ss_pred ccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccc
Q 027291 36 GPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPS 75 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps 75 (225)
|..-||+..+|.+.++.|.++|+|.... |.+ +|=+-++
T Consensus 40 a~~~~vSr~tvr~al~~L~~~Gli~~~~-~~G-~~V~~~~ 77 (113)
T 3tqn_A 40 STEYQINPLTVSKAYQSLLDDNVIEKRR-GLG-MLVKAGA 77 (113)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEET-TTE-EEECTTH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEEec-CCe-EEEeCCc
Confidence 3336999999999999999999986542 322 3444443
No 196
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=55.38 E-value=2.5 Score=40.51 Aligned_cols=61 Identities=23% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
|+....-+..|++|+.+.... |-+|+-.+ .|++..++.-+|..||++|+|...--|.+..|
T Consensus 511 ~~~~~~~~~~I~~~l~~~g~i-t~~di~~l---~~ls~~qa~~~L~~Lv~~G~l~~~G~gr~t~Y 571 (583)
T 3lmm_A 511 STDQAELTNAAMLWLSEVGDL-ATSDLMAM---CGVSRGTAKACVDGLVDEERVVAVGGGRSRRY 571 (583)
T ss_dssp -----------------------------------------------------------------
T ss_pred cCChhHHHHHHHHHHHHcCCc-CHHHHHHH---HCCCHHHHHHHHHHHHHCCcEEEeCCCCceEE
Confidence 444555567799999887664 77777665 47899999999999999999877666666555
No 197
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=55.16 E-value=67 Score=24.39 Aligned_cols=57 Identities=7% Similarity=0.118 Sum_probs=38.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 2 SKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 2 m~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
|+++++..+++|.+||+--. .+...+|+...||.||-... -|+.+.+|+-|||+..-
T Consensus 2 M~~~~~~~~~~r~~Il~aA~------------~lf~~~G~~~~s~~~IA~~a---------gvs~~t~Y~~F~sK~~L 58 (212)
T 2ras_A 2 MASSGTEHDAMRARLVDVAQ------------AIVEERGGAGLTLSELAARA---------GISQANLSRYFETREDL 58 (212)
T ss_dssp ----CHHHHHHHHHHHHHHH------------HHHHHHTSSCCCHHHHHHHH---------TSCHHHHTTTCSSHHHH
T ss_pred CCCCCccchHHHHHHHHHHH------------HHHHHhCcccCcHHHHHHHh---------CCCHHHHHHHcCCHHHH
Confidence 45556788899999976432 23333577888888887765 36778899999997643
No 198
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=55.07 E-value=6.3 Score=33.09 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=27.5
Q ss_pred ccCCCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 36 GPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
|..-||+.++|...|+.|+++|+|.. =|.+.|.
T Consensus 43 a~~~~vSr~tvr~Al~~L~~~G~i~~--~g~Gt~V 75 (248)
T 3f8m_A 43 AEQFEVARETVRQALRELLIDGRVER--RGRTTVV 75 (248)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSEEE--ETTEEEE
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEe--CCCEEEE
Confidence 33369999999999999999999999 5666554
No 199
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=55.02 E-value=58 Score=23.66 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHhhc-cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 5 RGLSLEEKRGKILEIFYES-QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~-~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
-|||..+ -.+|.++... ....+.+||-.. -|+...+|--+|+.|++.|+|.....
T Consensus 33 ~~lt~~q--~~vL~~l~~~~~~~~t~~eLa~~---l~~~~~tvs~~l~~Le~~Glv~r~~~ 88 (127)
T 2frh_A 33 FSISFEE--FAVLTYISENKEKEYYLKDIINH---LNYKQPQVVKAVKILSQEDYFDKKRN 88 (127)
T ss_dssp TCCCHHH--HHHHHHHHHTCCSEEEHHHHHHH---SSSHHHHHHHHHHHHHHTTSSCCBCC
T ss_pred cCCCHHH--HHHHHHHHhccCCCcCHHHHHHH---HCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 4777765 5678877765 256788887665 47889999999999999999988544
No 200
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=54.86 E-value=30 Score=21.81 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
+-.+++++..+|+..+++|.+++.++...
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777666554
No 201
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=54.72 E-value=58 Score=23.60 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
|||.. .-.+|.+++.....-+.++|-... ||+..+|-.+|+.|++.|+|.....
T Consensus 32 ~l~~~--~~~iL~~l~~~~~~~~~~~la~~l---~i~~~~vs~~l~~Le~~glv~r~~~ 85 (147)
T 2hr3_A 32 PVQFS--QLVVLGAIDRLGGDVTPSELAAAE---RMRSSNLAALLRELERGGLIVRHAD 85 (147)
T ss_dssp HHHHH--HHHHHHHHHHTTSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred CCCHH--HHHHHHHHHHcCCCCCHHHHHHHh---CCChhhHHHHHHHHHHCCCEeeCCC
Confidence 44443 467888888744557888887765 8999999999999999999987644
No 202
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=54.66 E-value=4.4 Score=32.07 Aligned_cols=42 Identities=26% Similarity=0.251 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhC-----CCCHHHHHHHHhhcCCCCCcc
Q 027291 158 IEVAHAAANRWTDNIFTLQQWCSNNF-----PQAKEELEQMYKDVGIPEDFD 204 (225)
Q Consensus 158 ~~~~k~aanrwTDNI~~l~~~~~kk~-----~~~~~~~~~l~~~fgIp~d~d 204 (225)
+..+..|||.. ||-.|.++|++.. |.++++ +|+-||||.||.
T Consensus 98 l~eLi~AAnyL--~I~~Lldl~c~~vA~~ikgkt~ee---ir~~f~I~nd~t 144 (160)
T 2p1m_A 98 LFELILAANYL--NIKNLLDLTCQTVADMIKGKTPEE---IRTTFNIKNDFT 144 (160)
T ss_dssp ---CHHHHHHT--TCHHHHHHHHHHHHHTTTTCCHHH---HHHHTTCCCCCC
T ss_pred HHHHHHHHHHH--hHHHHHHHHHHHHHHHHcCCCHHH---HHHHcCCCCCCC
Confidence 44466777766 5778888888754 557776 788999999974
No 203
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=54.57 E-value=47 Score=22.51 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.+|.+++.+|+.++-.|+-+...=+-.+|..|...+..+...+.-++
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~ 58 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILR 58 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCccCcHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888777666233489999999999988776554
No 204
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=54.37 E-value=33 Score=26.89 Aligned_cols=62 Identities=8% Similarity=0.130 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc-------cccccceeeEE--cccc
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL-------KDKIGTSVYFW--SLPS 75 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~-------~EKiGssN~YW--sFps 75 (225)
++-..+||..++.... -+.+||=+. -|++..+|-..|+.|.+.|+|. -.++|-.+.|| ..+.
T Consensus 16 d~~d~~IL~~L~~~~~-~s~~eLA~~---lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~ 86 (171)
T 2ia0_A 16 DDLDRNILRLLKKDAR-LTISELSEQ---LKKPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGK 86 (171)
T ss_dssp CHHHHHHHHHHHHCTT-CCHHHHHHH---HTSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESC
T ss_pred CHHHHHHHHHHHHcCC-CCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECC
Confidence 3444589999988654 577776443 5899999999999999999996 45777544443 4444
No 205
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=54.22 E-value=23 Score=26.68 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=25.6
Q ss_pred ccCCCcchhcHHHHHHHhhhcCcccccccccee
Q 027291 36 GPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSV 68 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN 68 (225)
|..-||+..+|.+.++.|..+|+|.... |.+.
T Consensus 35 a~~~gvSr~tVr~Al~~L~~~Gli~~~~-g~G~ 66 (129)
T 2ek5_A 35 AAFHRINPATARNGLTLLVEAGILYKKR-GIGM 66 (129)
T ss_dssp HHHTTCCHHHHHHHHHHHHTTTSEEEET-TTEE
T ss_pred HHHHCcCHHHHHHHHHHHHHCCcEEEec-CCEE
Confidence 3336999999999999999999997653 4443
No 206
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.14 E-value=1.2e+02 Score=27.18 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=18.9
Q ss_pred eeEEcccchhhhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 68 VYFWSLPSCAGNQLRNVY------RKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 68 N~YWsFps~~~~~~~~~~------~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
-|||+-..+.....+.++ .++...+...+....+........
T Consensus 346 gyC~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~ 393 (487)
T 3oja_A 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393 (487)
T ss_dssp HHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh
Confidence 377776665443333222 233333444444444444444444
No 207
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=54.13 E-value=63 Score=23.78 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
-|||..+ -.||.+++... .-+..||-... ||...+|--+|..|++.|+|.....
T Consensus 39 ~~lt~~~--~~iL~~l~~~~-~~t~~ela~~l---~i~~~tvs~~l~~Le~~Glv~r~~~ 92 (155)
T 3cdh_A 39 QGLRVPE--WRVLACLVDND-AMMITRLAKLS---LMEQSRMTRIVDQMDARGLVTRVAD 92 (155)
T ss_dssp TTCCHHH--HHHHHHHSSCS-CBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred cCCCHHH--HHHHHHHHHCC-CcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeccC
Confidence 3677664 46888887654 46888887654 8999999999999999999987543
No 208
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=54.00 E-value=19 Score=29.08 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc---cccc
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD---KIGT 66 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E---KiGs 66 (225)
.++-+.+||.+++ . ..-+..||-.. -|+++.+|-..|+.|.+.|+|... +.|.
T Consensus 18 ~d~~~~~IL~~L~-~-~~~s~~eLA~~---lglS~stv~~~l~~Le~~GlI~~~~~~~~~~ 73 (192)
T 1uly_A 18 LEDTRRKILKLLR-N-KEMTISQLSEI---LGKTPQTIYHHIEKLKEAGLVEVKRTEMKGN 73 (192)
T ss_dssp HSHHHHHHHHHHT-T-CCBCHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEEEEEEETT
T ss_pred CCHHHHHHHHHHH-c-CCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 4567889999998 3 45788887554 489999999999999999999887 5665
No 209
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=53.77 E-value=87 Score=25.32 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
++.++..|+.....+++.+..|+..++.++. .|...-+.+.+|+.++..|..+++...
T Consensus 53 Lq~~~~~L~~~k~~Leke~~~LQa~L~qEr~------~r~q~se~~~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 53 LQERNRILENSKSQTDKDYYQLQAILEAERR------DRGHDSEMIGDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666666666655 334444445555556666666555544
No 210
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=53.62 E-value=14 Score=26.91 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=36.2
Q ss_pred CHHHH--HHHHHHHHhhccCcc-chHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 8 SLEEK--RGKILEIFYESQDFY-LLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 8 S~eEK--r~ril~~f~e~~~~y-tlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
+.++= +..|+..+. ..+.. +..+|-.. -||+..+|.+.|+.|.++|+|....=|
T Consensus 23 ~y~~l~i~~~I~~~l~-~g~~lps~~eLa~~---lgVSr~tVr~al~~L~~~GlI~~~~gG 79 (102)
T 2b0l_A 23 SYSELEAIEHIFEELD-GNEGLLVASKIADR---VGITRSVIVNALRKLESAGVIESRSLG 79 (102)
T ss_dssp CHHHHHHHHHHTTSSB-TTEEEECHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHHhhhc-CCCcCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEEEeCC
Confidence 44444 455553332 23333 66665433 589999999999999999999887744
No 211
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=53.33 E-value=19 Score=27.92 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc-------cccccce-e--eEEcccch
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL-------KDKIGTS-V--YFWSLPSC 76 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~-------~EKiGss-N--~YWsFps~ 76 (225)
++.-.+||..+++.... +.+||= ..-|+++.+|-.-|+.|.+.|+|. -.+.|-. + +.|..+..
T Consensus 2 D~~d~~il~~L~~~~~~-s~~~la---~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~ 74 (162)
T 3i4p_A 2 DRLDRKILRILQEDSTL-AVADLA---KKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASH 74 (162)
T ss_dssp CHHHHHHHHHHTTCSCS-CHHHHH---HHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSC
T ss_pred CHHHHHHHHHHHHCCCC-CHHHHH---HHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCC
Confidence 34557899999987655 666653 345999999999999999999986 3578853 2 34555553
No 212
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=53.14 E-value=1.1e+02 Score=31.38 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCN 107 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie 107 (225)
++.++..++..+..++..+.+++..+.
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~ 888 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHT 888 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444444444444443
No 213
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=53.12 E-value=8.7 Score=32.36 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
|++.=+|--+||+.|.+.....++.||=.. .|+..-||--+|+.|++.|+|..+.
T Consensus 1 gi~sl~Ral~IL~~l~~~~~~lsl~eia~~---lgl~ksT~~RlL~tL~~~G~v~~~~ 55 (260)
T 3r4k_A 1 GMGTVSKALTLLTYFNHGRLEIGLSDLTRL---SGMNKATVYRLMSELQEAGFVEQVE 55 (260)
T ss_dssp -CCHHHHHHHHHTTCBTTBSEEEHHHHHHH---HCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred CccHHHHHHHHHHHHhhCCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEEcC
Confidence 567778889999999998889999998655 4999999999999999999998763
No 214
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=53.10 E-value=21 Score=26.64 Aligned_cols=59 Identities=12% Similarity=0.006 Sum_probs=35.5
Q ss_pred CCC-CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSK-KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~-~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
||+ ++.-..+++|.+|++-.. .+....|+...||.+|-... -|+.+.+|+-|||+..-
T Consensus 1 M~~~~~~~~~~~~r~~Il~aA~------------~lf~~~G~~~~t~~~IA~~a---------gvs~~t~Y~~F~sK~~L 59 (199)
T 3on2_A 1 MPVAEQPYHHGSLRRVLLARAE------------STLEKDGVDGLSLRQLAREA---------GVSHAAPSKHFRDRQAL 59 (199)
T ss_dssp ---CCCTTCCCCHHHHHHHHHH------------HHHHHHCGGGCCHHHHHHHT---------C-----CCCSSSSHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHH------------HHHHhcChhhhhHHHHHHHh---------CCChHHHHHHhCCHHHH
Confidence 444 455667778888876432 23334588888999887654 47888999999997654
Q ss_pred h
Q 027291 80 Q 80 (225)
Q Consensus 80 ~ 80 (225)
-
T Consensus 60 ~ 60 (199)
T 3on2_A 60 L 60 (199)
T ss_dssp H
T ss_pred H
Confidence 3
No 215
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=52.99 E-value=26 Score=27.93 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhh----ccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 11 EKRGKILEIFYE----SQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 11 EKr~ril~~f~e----~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
.++..||+|+.+ ..-.-|..||-+.. |+++.+|...|+.|..+|+|..+
T Consensus 5 ~~q~~il~~I~~~~~~~g~~~s~~eia~~l---gl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 5 ERQRKVLLFIEEFIEKNGYPPSVREIARRF---RITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHc---CCCcHHHHHHHHHHHHCCCEEec
Confidence 366778887765 34456888886554 88888999999999999999876
No 216
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.82 E-value=25 Score=23.06 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027291 87 KLESDLQSSKKRHTELVEQC 106 (225)
Q Consensus 87 ~l~~~i~~~~~~i~~l~~~i 106 (225)
.|+.++++++.++..|..++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444433333333333
No 217
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=52.71 E-value=4.7 Score=36.49 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=30.2
Q ss_pred cHHHHHHHhhhcCccccccccceeeEEcccchh
Q 027291 45 SVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCA 77 (225)
Q Consensus 45 ~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~ 77 (225)
.+.++++.|+.+|+|..+|.++.|+=|.|||..
T Consensus 246 ~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~ 278 (374)
T 3b5i_A 246 HFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQ 278 (374)
T ss_dssp HHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHH
T ss_pred HHHHHHHHHHHhCCcchhhcccCCccccCCCHH
Confidence 488889999999999999999999999999853
No 218
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=52.69 E-value=51 Score=22.42 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.+|.+++.+|+.++-.|+-+...=+-.+|..|...++.+...+.-++
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~ 58 (67)
T 2zjr_V 12 TDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKA 58 (67)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888877766233489999999999988876554
No 219
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.51 E-value=1.4e+02 Score=27.35 Aligned_cols=22 Identities=0% Similarity=0.015 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q 027291 151 FEAMKNAIEVAHAAANRWTDNI 172 (225)
Q Consensus 151 i~~~k~~~~~~k~aanrwTDNI 172 (225)
++.+++.+..+++.++.++--|
T Consensus 553 ~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 553 LDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 220
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=52.44 E-value=91 Score=25.15 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 027291 146 NDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 146 ~Dp~~i~~~k~~~~~~k~aan 166 (225)
.|++.|.++.+++..++..+.
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777766543
No 221
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=52.38 E-value=54 Score=25.32 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNALKKGR 113 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~k~~r 113 (225)
+..|+..++.++.+++.++..+..+...|
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e~~~ 91 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEENN 91 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566677777777777777666555443
No 222
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=52.31 E-value=83 Score=24.67 Aligned_cols=29 Identities=0% Similarity=0.005 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 027291 152 EAMKNAIEVAHAAANRWTDNIFTLQQWCS 180 (225)
Q Consensus 152 ~~~k~~~~~~k~aanrwTDNI~~l~~~~~ 180 (225)
..+...+..+....+++...+..+..++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 282 (284)
T 1c1g_A 254 DDLEDELYAQKLKYKAISEELDHALNDMT 282 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444555555555555555543
No 223
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=52.18 E-value=41 Score=23.31 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.+|.+++.+|+.++-.|+-+...=.-.+|..|...++.+...+.-++
T Consensus 19 eEL~~~L~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~ 65 (72)
T 3v2d_2 19 VELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLN 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777655444579999999999988877655
No 224
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.03 E-value=51 Score=22.78 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYA-DNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~-~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.+|.+++.+|+.++-.|+-+...=. -.+|..|...++.+...+.-++
T Consensus 12 ~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~ 59 (72)
T 3j21_W 12 EEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKK 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4677777778888877777766555 4579999999999888877655
No 225
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.01 E-value=11 Score=26.47 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=31.4
Q ss_pred HHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhc
Q 027291 15 KILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDD 56 (225)
Q Consensus 15 ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDD 56 (225)
-+..+|+. +.+-.=.||++++.|.+++.+.|||..-+..-+
T Consensus 20 ~L~~Yy~~-hk~L~EeDl~~L~~kskms~qqvkdwFa~k~~E 60 (70)
T 2ys9_A 20 PLERYWAA-HQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQ 60 (70)
T ss_dssp HHHHHHHH-TCCCCTTHHHHHHHHTTCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHH-hcccchhhHHHHHHHhCCCHHHHHHHHHhcccc
Confidence 34455554 445567899999999999999999998776654
No 226
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.08 E-value=30 Score=22.63 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCN 107 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie 107 (225)
...-.++.....|+.+++.+..++++++.+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666666666666553
No 227
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=50.99 E-value=31 Score=26.33 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=44.4
Q ss_pred HHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccce--eeEEcccchhhhhHHHHHHHH
Q 027291 16 ILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTS--VYFWSLPSCAGNQLRNVYRKL 88 (225)
Q Consensus 16 il~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGss--N~YWsFps~~~~~~~~~~~~l 88 (225)
||..+. ...-+..||-+..| ||++.++-..|..|.++|||........ .++++..... ..+...+..+
T Consensus 31 IL~~L~--~g~~rf~eL~~~l~--gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G-~~l~~~l~~l 100 (131)
T 4a5n_A 31 LFYHMI--DGKKRFNEFRRICP--SITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFG-RTLEPIVLQM 100 (131)
T ss_dssp HHHHHT--TSCBCHHHHHHHCT--TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTG-GGGHHHHHHH
T ss_pred HHHHHh--cCCcCHHHHHHHhc--ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhH-HHHHHHHHHH
Confidence 444443 34567788887776 7999999999999999999987755431 3444544433 3333344433
No 228
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=50.84 E-value=24 Score=29.95 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 6 GLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
++..=+|--.||+.|.+.....++.||=.. .|+..-||--+|+.|++.|+|..+.
T Consensus 25 ~v~sl~Ral~IL~~l~~~~~~ltl~eia~~---lgl~ksTv~RlL~tL~~~G~v~~~~ 79 (275)
T 3mq0_A 25 TVPALRRAVRILDLVAGSPRDLTAAELTRF---LDLPKSSAHGLLAVMTELDLLARSA 79 (275)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCEEHHHHHHH---HTCC--CHHHHHHHHHHTTSEEECT
T ss_pred cchHHHHHHHHHHHHhhCCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEECC
Confidence 456667899999999999888999998554 4889999999999999999998874
No 229
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=50.78 E-value=5.9 Score=30.77 Aligned_cols=58 Identities=9% Similarity=0.178 Sum_probs=37.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
|+.++.-..+++|.+||+--. .+...+|....||.||-... -|+.+.+|+-|||+..-
T Consensus 4 m~~~~~~~~~~~r~~Il~aA~------------~lf~~~G~~~~s~~~IA~~a---------gvsk~tlY~yF~sKe~L 61 (199)
T 3crj_A 4 MAGPSDRTFSDQTEEIMQATY------------RALREHGYADLTIQRIADEY---------GKSTAAVHYYYDTKDDL 61 (199)
T ss_dssp ------CCHHHHHHHHHHHHH------------HHHHHHTTTTCCHHHHHHHH---------TSCHHHHHTTCSSHHHH
T ss_pred cCCCccccchhHHHHHHHHHH------------HHHHHcCcccCCHHHHHHHh---------CCChhHHhhhcCCHHHH
Confidence 344556678889999876432 23333577888888887654 36778889999997643
No 230
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=50.71 E-value=55 Score=23.99 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 027291 147 DPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSN 181 (225)
Q Consensus 147 Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~k 181 (225)
||..++ .++..+..-++.-.-|++-+.+|+..
T Consensus 56 D~~s~~---~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 56 DPASLE---PQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp CGGGSH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666653 34445555566666777777777663
No 231
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=50.41 E-value=21 Score=30.36 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=47.9
Q ss_pred HHHHHHHHh-hccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 13 RGKILEIFY-ESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 13 r~ril~~f~-e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
|+.|+.+|. ....--.+.+|=.++.--||+..+|.=-|--||.+|.+..+++|
T Consensus 6 rSlIlsll~g~~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~G~L~~~~~G 59 (247)
T 3kfw_X 6 RSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 59 (247)
T ss_dssp HHHHHHHHTTTTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred ceeeEeeecCCCCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeccCCc
Confidence 578999874 44667889999999999999999999999999999999999999
No 232
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=50.36 E-value=3.8 Score=31.95 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=35.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
|++++.-..++.|.+||+-. ..+...+|+...||.+|-... -|+.+.+||-|||+..-
T Consensus 2 M~~~~~~~~~~tr~~Il~aA------------~~l~~e~G~~~~s~~~IA~~a---------gvs~~t~Y~hF~~Ke~L 59 (198)
T 3cjd_A 2 MAGKVEARKAALREKLIDLA------------EAQIEAEGLASLRARELARQA---------DCAVGAIYTHFQDLNAL 59 (198)
T ss_dssp --------CHHHHHHHHHHH------------HHHHHHHCGGGCCHHHHHHHH---------TSCHHHHHHHCSSHHHH
T ss_pred CCcchhhhHHHHHHHHHHHH------------HHHHHhCChhhcCHHHHHHHh---------CCCccHHHHHhCCHHHH
Confidence 55555455667777776633 344444688888888887765 36788999999997643
No 233
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=50.16 E-value=59 Score=22.35 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQ-YADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~-~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.+|.+++.+|+.++-.|+-+... =+-.+|..|...++.+...+.-++
T Consensus 15 ~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~ 62 (71)
T 1vq8_V 15 AEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQG 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHH
Confidence 46777777788887777766554 223489999999999888776543
No 234
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=50.11 E-value=25 Score=28.11 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=42.0
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
.+-..+-+=+.--||-+||...+.++|+.+..|..||..|...|+|+=+.-
T Consensus 20 a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rf 70 (177)
T 3e3v_A 20 GYNAALNYLSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNY 70 (177)
T ss_dssp HHHHHHHHHHSSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 333344445678899999999999999999999999999999999986653
No 235
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=49.87 E-value=67 Score=25.98 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=41.6
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHH
Q 027291 72 SLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGR-EESDEREEALEELKAVELKHIELK 137 (225)
Q Consensus 72 sFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r-~~~~eR~~ll~~l~~L~~~~~~l~ 137 (225)
.+..+...+++.-.++...+...++.++...+.++..+...- .|...=.++.+++.+|+.++...+
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666667777788888888888888887776543 333333455555655555554443
No 236
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.67 E-value=82 Score=23.81 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDE-REEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~e-R~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
......|......+......|...++.....-.+.++ +..+.....+|...+..+...++...+.
T Consensus 33 e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~ 98 (129)
T 2fxo_A 33 EARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777777766544333344 3466666677777777777777666544
No 237
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=49.38 E-value=22 Score=32.34 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHH
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKG-REESDEREEALEELKAVE 130 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~-r~~~~eR~~ll~~l~~L~ 130 (225)
....+..++..|++++.+++..+.+++..++.+... +.+...|..+-+++.+|+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345677778888888888888888888877777553 334456777777777664
No 238
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=49.00 E-value=8 Score=29.10 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=24.0
Q ss_pred hhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 34 KLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 34 K~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
.+|..-||+..+|.+.++.|.++|+|...
T Consensus 40 ~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 40 EYASIVEVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp TTTTCC-CCSGGGHHHHHHHHTTTSEEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 34555899999999999999999999765
No 239
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=48.87 E-value=69 Score=22.72 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 88 LESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
+.+.+...+.++..|...=++++.| .+.+-.-+..|+.+...+.+.+..|+
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G------~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKG------HQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555543 35566667777777777777776665
No 240
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=48.84 E-value=13 Score=26.10 Aligned_cols=52 Identities=15% Similarity=0.078 Sum_probs=34.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCc
Q 027291 2 SKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDL 58 (225)
Q Consensus 2 m~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDgl 58 (225)
|+++..|.+.|..-+..++.. .=+++.++- ..-||++.+|--.+...-..|.
T Consensus 1 M~r~~ys~e~k~~~v~~~~~~--~g~s~~~ia---~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 1 MPTKTYSEEFKRDAVALYENS--DGASLQQIA---NDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp CCCCCCCHHHHHHHHHHHTTG--GGSCHHHHH---HHHTSCHHHHHHHHHHHCCCST
T ss_pred CCCCCCCHHHHHHHHHHHHHc--CCChHHHHH---HHHCcCHHHHHHHHHHHhhcCc
Confidence 566679999987665544332 024555554 3369999999998887766554
No 241
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=48.71 E-value=25 Score=27.51 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHHHHHHHhh-ccCccch-HHHHhhccCCCcchhcHHHHHHHhhhcCccccccc-----cceeeEEcccch
Q 027291 4 KRGLSLEEKRGKILEIFYE-SQDFYLL-KELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI-----GTSVYFWSLPSC 76 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e-~~~~ytl-KELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi-----GssN~YWsFps~ 76 (225)
++.++.+.-.--||.++.+ ...+|.| +.|+.....-+|+.-+|=-+|..|.++|+|..... |-..-|++.-..
T Consensus 37 ~~~l~~~~~~~~IL~lL~~~p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~ 116 (148)
T 2zfw_A 37 PHYLSKELAVCYVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQA 116 (148)
T ss_dssp CEECCHHHHHHHHHHHHTTCCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSS
T ss_pred ccccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHH
Confidence 3457766655567888864 4556665 57887764457889999999999999999998753 334567788777
Q ss_pred hhhhHHHHHH
Q 027291 77 AGNQLRNVYR 86 (225)
Q Consensus 77 ~~~~~~~~~~ 86 (225)
....+...+.
T Consensus 117 Gr~~l~~~~~ 126 (148)
T 2zfw_A 117 NDDRSRDLAQ 126 (148)
T ss_dssp SCSTTHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665544433
No 242
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.46 E-value=62 Score=29.48 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 87 KLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 87 ~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
.|..++..+++++.++++.++.... +...+-+++.+.+.+.+.|..++..++.+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~------~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAA------ELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555555433 33444455666777778888888877764
No 243
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=48.33 E-value=77 Score=24.27 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=46.9
Q ss_pred HHHHHHHHhh-ccCccch-HHHHhhccC-CCcchhcHHHHHHHhhhcCccccccc----cceeeEEcccchhhhhHH
Q 027291 13 RGKILEIFYE-SQDFYLL-KELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKI----GTSVYFWSLPSCAGNQLR 82 (225)
Q Consensus 13 r~ril~~f~e-~~~~ytl-KELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKi----GssN~YWsFps~~~~~~~ 82 (225)
+-.||.++.+ ...+|.| ++|+....- -+|++-+|=-+|..|.++|+|..... |---.|++.-......+.
T Consensus 43 ~~~IL~~L~~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 119 (145)
T 1xma_A 43 DTIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYK 119 (145)
T ss_dssp HHHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHH
Confidence 3567777765 3445653 456554443 57889999999999999999988764 334456677766554433
No 244
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=48.27 E-value=14 Score=25.93 Aligned_cols=43 Identities=5% Similarity=0.034 Sum_probs=33.9
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVL 60 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~ 60 (225)
..|++++.+... -++.||=+ .-||++++|.--|..|...|+|.
T Consensus 5 ~~Il~~L~~~g~-vsv~eLa~---~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGR-MEAAQISQ---TLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCS-BCHHHHHH---HTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCC-CcHHHHHH---HHCcCHHHHHHHHHHHHHCCCEE
Confidence 568888877654 46666544 45999999999999999999983
No 245
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.03 E-value=48 Score=24.01 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=18.4
Q ss_pred ccccccceeeEEccc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 60 LKDKIGTSVYFWSLP-SCAGNQLRNVYRKLESDLQSSKKRHTELVEQ 105 (225)
Q Consensus 60 ~~EKiGssN~YWsFp-s~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ 105 (225)
.--.|| .+|-..| .++...+..+.+.+...++.+..++..++..
T Consensus 55 vy~~iG--~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 55 VYKTVG--TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp EEEEET--TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhh--HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666 3343333 2333334444444444444444443333333
No 246
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=47.93 E-value=62 Score=24.58 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=40.3
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccce-eeEEcccch
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTS-VYFWSLPSC 76 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGss-N~YWsFps~ 76 (225)
-.||..+. ...-+..||-+.. ||+..+|-..|..|++.|+|........ .+++++-..
T Consensus 27 l~IL~~L~--~g~~~~~eLa~~l---gis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~ 85 (146)
T 2f2e_A 27 MLIVRDAF--EGLTRFGEFQKSL---GLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDK 85 (146)
T ss_dssp HHHHHHHH--TTCCSHHHHHHHH---CCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECch
Confidence 34555554 2346778887665 8999999999999999999997764221 344455443
No 247
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.89 E-value=77 Score=22.98 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIEL 136 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l 136 (225)
..+-.++..++.+...|
T Consensus 35 ~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 35 KVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 248
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=47.09 E-value=27 Score=26.76 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
++...+++|.+||+-- ..+...+|+...||.||.+.. -|+.+.+|+-|||+..-
T Consensus 8 ~~~~~~~~r~~Il~aA------------~~lf~~~G~~~~s~~~IA~~a---------gvs~~tlY~~F~sKe~L 61 (204)
T 2ibd_A 8 DTSGKSGRRTELLDIA------------ATLFAERGLRATTVRDIADAA---------GILSGSLYHHFDSKESM 61 (204)
T ss_dssp ---CHHHHHHHHHHHH------------HHHHHHHCSTTCCHHHHHHHT---------TSCHHHHHHHCSCHHHH
T ss_pred cccccchhHHHHHHHH------------HHHHHHcCchhcCHHHHHHHh---------CCCchhHHHhcCCHHHH
Confidence 5678889999997543 223333588889999887764 47778899999997643
No 249
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=46.59 E-value=1.2e+02 Score=25.04 Aligned_cols=81 Identities=14% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCCHHHHHHHHhh
Q 027291 118 EREEALEELKAVEL-KHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQAKEELEQMYKD 196 (225)
Q Consensus 118 eR~~ll~~l~~L~~-~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~~~~~~~~l~~~ 196 (225)
+...++..++.|.. .+..|+.-|..|.................+..++.. .|+-.-+..|+... + .-
T Consensus 206 ~~p~~~~~lQ~lee~r~~~lk~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-id~~~D~~~fi~~~-~----------~g 273 (301)
T 2efk_A 206 QMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIAKCLEGMKVAANA-VDPKNDSHVLIELH-K----------SG 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHT-G----------GG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHc-C----------CC
Confidence 34455666666653 345666666666654333333222222333333322 22223334444321 1 24
Q ss_pred cCCCCCccccccCC
Q 027291 197 VGIPEDFDYLELSP 210 (225)
Q Consensus 197 fgIp~d~dy~e~~~ 210 (225)
|.+|.+|.|.+..+
T Consensus 274 ~~~P~~~~Fe~~~~ 287 (301)
T 2efk_A 274 FARPGDVEFEDFSQ 287 (301)
T ss_dssp CCCCCCCCCCCCC-
T ss_pred CCCCCCCCcccCCC
Confidence 67798887665443
No 250
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=46.40 E-value=82 Score=22.87 Aligned_cols=53 Identities=25% Similarity=0.167 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHh---hccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 6 GLSLEEKRGKILEIFY---ESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 6 glS~eEKr~ril~~f~---e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
++|..+- .+|..+. .....-+++||-+.. ||+..+|-..|+.|++.|+|....
T Consensus 10 ~lt~~~~--~~L~~l~~l~~~~~~~s~~ela~~l---~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 10 NLSRREF--SYLLTIKRYNDSGEGAKINRIAKDL---KIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp -CCHHHH--HHHHHHHHHHTTTSCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred hcCHHHH--HHHHHHHHHHhcCCCcCHHHHHHHh---CCChHHHHHHHHHHHHCCCEEecC
Confidence 4665443 3444443 345667888876654 899999999999999999999876
No 251
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=45.89 E-value=45 Score=25.02 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=29.3
Q ss_pred ccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 64 IGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNA 108 (225)
Q Consensus 64 iGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~ 108 (225)
+|++-|-..=..++..-+..+++.++..++.++..+..++..+..
T Consensus 76 lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~ 120 (133)
T 1fxk_C 76 VGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMK 120 (133)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777555555555666667777777777777776666666655543
No 252
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=45.48 E-value=22 Score=30.71 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=55.6
Q ss_pred HHHHHHHH----hhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 13 RGKILEIF----YESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 13 r~ril~~f----~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
++.|+.+| .....--.+.+|=.++.--||+..+|-=-|.-|+.+|.|..++.|-.. |+++.......
T Consensus 25 ~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~-~Y~Lt~~g~~~ 95 (266)
T 3l09_A 25 WSVLVTCLGDVSRDGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVESRRLGRVG-FHRLSDSALTQ 95 (266)
T ss_dssp HHHHHHHHHHHHHTTCCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEE-EEEECHHHHHH
T ss_pred hHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCchHHHHHHHHHHHCCCeeeeecCCcc-eEEECHHHHHH
Confidence 36677777 445567788999999999999999999999999999999999999777 77777655444
No 253
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=44.98 E-value=1e+02 Score=31.62 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027291 124 EELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 124 ~~l~~L~~~~~~l~~el~~~ 143 (225)
.++.+|+.++..++.+++..
T Consensus 920 ~~~~~Le~~l~ele~elee~ 939 (1184)
T 1i84_S 920 AKKQELEEILHEMEARIEEE 939 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 254
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.45 E-value=24 Score=19.82 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027291 88 LESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
|+-+.+.++++|+.|+.+|...
T Consensus 5 lefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHh
Confidence 4444555556666666555544
No 255
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=44.43 E-value=95 Score=23.79 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 027291 88 LESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKD 138 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~ 138 (225)
++.+|..+..++..++.++..+ ..|.|.+-=.+...+++.|.+++.+|+.
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa-~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADL-SLVEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-CTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555665555555444 3466666655666666666666666654
No 256
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=43.88 E-value=16 Score=26.34 Aligned_cols=46 Identities=7% Similarity=0.057 Sum_probs=35.6
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
..|++++.+... -++.||= ..-||++++|.--|..|...|+|.-..
T Consensus 5 ~~Il~~L~~~g~-vsv~eLA---~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGR-MEAKQLS---ARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCS-EEHHHHH---HHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCC-CcHHHHH---HHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 568888877654 4555554 445999999999999999999987653
No 257
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=43.87 E-value=12 Score=30.41 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=25.4
Q ss_pred CCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
=||+-.+|.+.|+.|+.+|+|.... |.+.|.
T Consensus 41 ~gVSR~tVReAL~~L~~eGlv~~~~-g~G~~V 71 (239)
T 1hw1_A 41 IGVTRTTLREVLQRLARDGWLTIQH-GKPTKV 71 (239)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEET-TEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCcEEEec-CCCcEe
Confidence 6999999999999999999998753 444443
No 258
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=43.74 E-value=6.6 Score=28.09 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=27.0
Q ss_pred chHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 28 LLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 28 tlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
+..||-.. -||+..+|...|+.|.++|+|....
T Consensus 37 s~~eLa~~---~~vSr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 37 SVADIRAQ---FGVAAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp CHHHHHHH---SSSCTTHHHHHTTTTTTSSCCEEET
T ss_pred CHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 56665443 5899999999999999999998754
No 259
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=43.20 E-value=41 Score=26.02 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=32.2
Q ss_pred ccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 64 IGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 64 iGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
+|++-|-..=..++..-...+++.++..++.+...+..++..+...
T Consensus 86 lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~ 131 (151)
T 2zdi_C 86 VGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEV 131 (151)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred eCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6776665655667777777777777777777777777776666543
No 260
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=42.29 E-value=30 Score=28.59 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=40.0
Q ss_pred HHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 18 EIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 18 ~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
.+-+=+.--||-+||...+.++|+.+..|..||..|...|+|+=+.-
T Consensus 67 Al~~Ls~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rf 113 (221)
T 3d5l_A 67 MLDYLSYQMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAY 113 (221)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHhccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 34444778999999999888899999999999999999999976553
No 261
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=42.06 E-value=14 Score=26.92 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=24.8
Q ss_pred HHHHHHHhhCCCCHHHHHHHHhhcCCCCCcccc
Q 027291 174 TLQQWCSNNFPQAKEELEQMYKDVGIPEDFDYL 206 (225)
Q Consensus 174 ~l~~~~~kk~~~~~~~~~~l~~~fgIp~d~dy~ 206 (225)
+|..|+...+|+.+++ .+.-||+|.|+--+
T Consensus 33 ~LkRHL~~~hgltpee---YR~kwGlp~dyPmv 62 (87)
T 2jsp_A 33 SLKRHLTTHHSMTPEE---YREKWDLPVDYPMV 62 (87)
T ss_dssp BHHHHHHHTTCSCHHH---HHHHTTCGGGCCSB
T ss_pred HHHHHHHHccCCCHHH---HHHHhCCCCCCccc
Confidence 4678999889999998 67799999986544
No 262
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=41.69 E-value=1.1e+02 Score=23.05 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027291 92 LQSSKKRHTELVEQCNA 108 (225)
Q Consensus 92 i~~~~~~i~~l~~~ie~ 108 (225)
+......+..++..++.
T Consensus 15 ~~~~~eel~~lke~l~k 31 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEK 31 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444433
No 263
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=41.46 E-value=37 Score=25.47 Aligned_cols=58 Identities=10% Similarity=0.164 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 2 SKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 2 m~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
|+++.-..+++|.+|++-. ..+...+|....||.||.+.. -|+.+++|.-|||+..--
T Consensus 2 M~r~~~~~~~~r~~Il~aA------------~~lf~~~G~~~~s~~~Ia~~a---------gvs~~t~Y~~F~sK~~L~ 59 (203)
T 3b81_A 2 MSRTNINFNNKRTELANKI------------WDIFIANGYENTTLAFIINKL---------GISKGALYHYFSSKEECA 59 (203)
T ss_dssp -----CCHHHHHHHHHHHH------------HHHHHHHCSTTCCHHHHHHHH---------TCCHHHHHTTCSSHHHHH
T ss_pred CCccccChHHHHHHHHHHH------------HHHHHHcCcccCcHHHHHHHh---------CCCchhHHHHcCCHHHHH
Confidence 3333456788999997643 233444588889999988765 477789999999976543
No 264
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=41.46 E-value=11 Score=29.81 Aligned_cols=55 Identities=15% Similarity=0.318 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
++....+++|.+|++-.. .+...+|+...||.||.+.. -|+.+++|+-|+|+..-
T Consensus 6 ~~~~~~~~~r~~Il~AA~------------~l~~~~G~~~~tv~~IA~~a---------gvs~~t~Y~~F~sK~~L 60 (231)
T 2qib_A 6 RRRMGVEERRQQLIGVAL------------DLFSRRSPDEVSIDEIASAA---------GISRPLVYHYFPGKLSL 60 (231)
T ss_dssp ---CCHHHHHHHHHHHHH------------HHHHHSCGGGCCHHHHHHHH---------TSCHHHHHHHCSSHHHH
T ss_pred CCCcCHHHHHHHHHHHHH------------HHHHHcCchhcCHHHHHHHh---------CCCHHHHHHHCCCHHHH
Confidence 456889999999976543 33444688888888887765 36778889999987543
No 265
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=41.29 E-value=3.6 Score=32.27 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
||++..-..+++|.+||+-- ..+...+|....||.||.... -|+.+.+|+-|||+..-
T Consensus 1 M~~~~~~~~~~~r~~Il~aA------------~~lf~~~G~~~~s~~~IA~~a---------GvskgtlY~~F~sKe~L 58 (219)
T 2w53_A 1 MARKTKEDTQATREGILDAA------------EACFHEHGVARTTLEMIGARA---------GYTRGAVYWHFKNKSEV 58 (219)
T ss_dssp ------CGGGCCHHHHHHHH------------HHHHHHHCTTTCCHHHHHHHH---------TSCHHHHHTTCSSHHHH
T ss_pred CCcchhhHHHHHHHHHHHHH------------HHHHHHhCcccCCHHHHHHHh---------CCCchHHhhcCCCHHHH
Confidence 66665555667788886532 223333577888888887654 36778899999997643
No 266
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.02 E-value=46 Score=25.91 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccC-----CC-----cchhcHHHHHHHhhhcCcccccc
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPK-----KG-----VITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pK-----kG-----I~~~~VKdvlQ~LVDDglV~~EK 63 (225)
++.+-..+-+=+.--||-+||...+.+ .| +.+-.|..||..|.+.|+|+=+.
T Consensus 5 ~~a~~~Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~r 66 (159)
T 3c1d_A 5 ARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSR 66 (159)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHH
Confidence 333444444556788999999876655 48 99999999999999999997654
No 267
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.66 E-value=79 Score=22.44 Aligned_cols=53 Identities=9% Similarity=0.200 Sum_probs=26.2
Q ss_pred hcCccccccccceeeEEcccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 55 DDDLVLKDKIGTSVYFWSLPS-CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 55 DDglV~~EKiGssN~YWsFps-~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
||+-..--.||- +|-..|- ++...+..+.+.+...++.+..++..++..++..
T Consensus 45 ~~d~~vy~~iG~--vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 45 ADDAEVYKSSGN--ILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp CTTCCEEEEETT--EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHhH--HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344334466663 3433332 3444455555555555555555555555555444
No 268
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=40.36 E-value=45 Score=18.56 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEM 140 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el 140 (225)
.++-.+++.|++.+..|++.|
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356667777777777776665
No 269
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=40.21 E-value=1.1e+02 Score=22.67 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=31.1
Q ss_pred HHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 17 LEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 17 l~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
+.++.... ..+..+|-. .-||+..+|-..|+.|.+.|+|....
T Consensus 46 ~~~l~~~~-~~~~~~la~---~l~vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 46 SDLIREVG-EARQVDMAA---RLGVSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp HHHHHHHS-CCCHHHHHH---HHTSCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHhCC-CcCHHHHHH---HhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 33555443 346665543 35899999999999999999997654
No 270
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.98 E-value=77 Score=21.85 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027291 121 EALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
.+..+...|...+..|..|+..|
T Consensus 47 ~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 47 STTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 35566667777777777776655
No 271
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=38.62 E-value=32 Score=29.83 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccc
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGT 66 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGs 66 (225)
..+.+.+||.++. ...+.+.+||-... ||+.++|.-.|+.|-+.|++-..+-|.
T Consensus 3 ~~~r~~~Il~~L~-~~~~~s~~eLa~~l---~vS~~ti~r~l~~L~~~G~~i~~~~g~ 56 (321)
T 1bia_A 3 DNTVPLKLIALLA-NGEFHSGEQLGETL---GMSRAAINKHIQTLRDWGVDVFTVPGK 56 (321)
T ss_dssp CCHHHHHHHHHHT-TSSCBCHHHHHHHH---TSCHHHHHHHHHHHHHTTCCCEEETTT
T ss_pred cchHHHHHHHHHH-cCCCcCHHHHHHHH---CCCHHHHHHHHHHHHhCCCcEEEecCC
Confidence 3467889999996 56688888875544 899999999999999999987555554
No 272
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=38.59 E-value=1.4e+02 Score=23.16 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhhc-cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 6 GLSLEEKRGKILEIFYES-QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 6 glS~eEKr~ril~~f~e~-~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
|||..+ -.+|.+++.. ...-++.+|-... |+...+|--+|..|+..|+|......
T Consensus 38 ~lt~~q--~~vL~~L~~~~~~~~t~~eLa~~l---~is~~tvs~~l~~Le~~GlV~r~~~~ 93 (189)
T 3nqo_A 38 ILTSRQ--YMTILSILHLPEEETTLNNIARKM---GTSKQNINRLVANLEKNGYVDVIPSP 93 (189)
T ss_dssp SSCHHH--HHHHHHHHHSCGGGCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCHHH--HHHHHHHHhccCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 466554 5677777764 4567888885554 89999999999999999999987653
No 273
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=38.58 E-value=16 Score=31.09 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=23.7
Q ss_pred cCCCcchhcHHHHHHHhhhcCccccc-cccc
Q 027291 37 PKKGVITQSVKDVVQSLVDDDLVLKD-KIGT 66 (225)
Q Consensus 37 pKkGI~~~~VKdvlQ~LVDDglV~~E-KiGs 66 (225)
..-||+.++|...|+.|+++|+|... ..||
T Consensus 61 ~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~ 91 (272)
T 3eet_A 61 EEYGVSDTVALEARKVLMAEGLVEGRSGSGT 91 (272)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEECCC--E
T ss_pred HHHCCCHHHHHHHHHHHHHCCCEEEecCceE
Confidence 33699999999999999999999764 3444
No 274
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=38.47 E-value=17 Score=30.29 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=25.4
Q ss_pred CCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 39 KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
-||+.++|...|+.|+++|+|... -|.+.|.
T Consensus 44 ~~vSr~tvr~Al~~L~~~G~i~~~-~g~G~~V 74 (243)
T 2wv0_A 44 FGISRMTVRQALSNLVNEGLLYRL-KGRGTFV 74 (243)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEC-TTSCEEE
T ss_pred HCcCHHHHHHHHHHHHHCCcEEEe-CCCeEEE
Confidence 589999999999999999999764 3555443
No 275
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=38.36 E-value=33 Score=30.23 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=37.5
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK 61 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~ 61 (225)
+.+||++++... .-|-.||-+. .|++..||-.+++.|+++|+|..
T Consensus 18 ~~~il~~l~~~~-~~sr~~la~~---~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 18 AGAVYRLIDQLG-PVSRIDLSRL---AQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHSSC-SCCHHHHHHH---TTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcC-CcCHHHHHHH---HCCCHHHHHHHHHHHHHCCcEEe
Confidence 467999998765 4688887554 69999999999999999999976
No 276
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=38.36 E-value=46 Score=24.11 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=46.1
Q ss_pred HHHHHHHHhhccCccc----hHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHH
Q 027291 13 RGKILEIFYESQDFYL----LKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRN 83 (225)
Q Consensus 13 r~ril~~f~e~~~~yt----lKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~ 83 (225)
.--||.++......++ +++|++... -.+++-+|=-+|..|.++|+|.... |-..-|++........+..
T Consensus 11 ~~~IL~lL~~~~~~~~g~~i~~ei~~~~~-~~is~GtlYp~L~rLe~~GlI~~~~-~~~rk~Y~iT~~Gr~~l~~ 83 (99)
T 2co5_A 11 YYIILKVLVINGSRLEKKRLRSEILKRFD-IDISDGVLYPLIDSLIDDKILREEE-APDGKVLFLTEKGMKEFEE 83 (99)
T ss_dssp HHHHHHHHHHTTTEEEGGGHHHHHHHHHC-CBCCHHHHHHHHHHHHHTTSEEEEC-CTTSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHCCCEEEee-CCCcEEEEECHHHHHHHHH
Confidence 3448888864433333 356665432 2577899999999999999999987 6555566666655544443
No 277
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=38.17 E-value=66 Score=26.76 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDE 139 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~e 139 (225)
..+.++++++-....+++.+
T Consensus 156 ~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 156 NDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444
No 278
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=38.14 E-value=1.6e+02 Score=23.90 Aligned_cols=151 Identities=13% Similarity=0.189 Sum_probs=81.1
Q ss_pred HHHHHHHhh-ccCccch-HHHHhhccC-CCcchhcHHHHHHHhhhcCccccccc---c-ceeeEEcccchhhhhHHHHHH
Q 027291 14 GKILEIFYE-SQDFYLL-KELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKI---G-TSVYFWSLPSCAGNQLRNVYR 86 (225)
Q Consensus 14 ~ril~~f~e-~~~~ytl-KELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKi---G-ssN~YWsFps~~~~~~~~~~~ 86 (225)
..||.++.+ ....|.| +.|+....- -+|+..+|=-.|..|.++|+|..... | -..-|++........+..-+.
T Consensus 39 ~~IL~lL~~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~ 118 (204)
T 3l9f_A 39 DIILGILSKKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQ 118 (204)
T ss_dssp HHHHHHTSSCCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHh
Confidence 467777764 3566666 466665444 57889999999999999999998754 1 134566766655544333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHH
Q 027291 87 KLESDLQSSKKRHTELVEQCNALKKGREESDEREEAL-EELKAVELKHIELKDEMGQYADN---DPAAFEAMKNAIEVAH 162 (225)
Q Consensus 87 ~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll-~~l~~L~~~~~~l~~el~~~~~~---Dp~~i~~~k~~~~~~k 162 (225)
..-.. .....++--++ .-...-+.+++..+| .++..++.+++.++..+...... +|-..-.+.-.+. ..
T Consensus 119 ~~~~~----~~~~~~f~~kl--~f~~~l~~~~~~~~L~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~le~~i~-~~ 191 (204)
T 3l9f_A 119 SDVND----EIFKSDFLMRL--FFGNSLNDDDLEQLIREEIERKEEKIKRLSENLEIWKKKGELTPTQEITIKYGLA-QY 191 (204)
T ss_dssp SCCCC----CEEECHHHHHH--HTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HH
T ss_pred cccCC----CCCccHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHHHH-HH
Confidence 11000 00001111111 111223334544444 55777788888887776665543 3433322222222 23
Q ss_pred HHHHhhhhh
Q 027291 163 AAANRWTDN 171 (225)
Q Consensus 163 ~aanrwTDN 171 (225)
++--+|.|.
T Consensus 192 eael~Wl~~ 200 (204)
T 3l9f_A 192 KSTKKVLEE 200 (204)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444566653
No 279
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=37.70 E-value=27 Score=28.99 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=27.8
Q ss_pred CccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 25 DFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 25 ~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
..=+-++|=+. -|+++-||-+.|+-|-+.|||..++
T Consensus 29 ~~V~~~~LA~~---LgvS~~SV~~~lkkL~e~GLV~~~~ 64 (200)
T 2p8t_A 29 EPLGRKQISER---LELGEGSVRTLLRKLSHLDIIRSKQ 64 (200)
T ss_dssp SCBCHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCccHHHHHHH---hCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 44455554332 4799999999999999999999999
No 280
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=37.41 E-value=1.3e+02 Score=24.43 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=26.9
Q ss_pred hccCCCcchhcHHHHHHHhhhcCccccc-cccce
Q 027291 35 LGPKKGVITQSVKDVVQSLVDDDLVLKD-KIGTS 67 (225)
Q Consensus 35 ~~pKkGI~~~~VKdvlQ~LVDDglV~~E-KiGss 67 (225)
+|-.-||+..+|.+-|..|..+|+|... .-|+.
T Consensus 55 La~~lgVSr~~VReAL~~L~~~Glv~~~~~~G~~ 88 (237)
T 3c7j_A 55 LATLFGVSRMPVREALRQLEAQSLLRVETHKGAV 88 (237)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceE
Confidence 3334699999999999999999999987 45543
No 281
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=37.22 E-value=87 Score=20.57 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 120 EEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
...+.++++|-.-.-.|..|+..|..
T Consensus 24 ~~q~~eYq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 24 ARLKKLVGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34456666666666677777777753
No 282
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=37.04 E-value=28 Score=26.55 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=37.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
||+++.-..+++|.+||+--. .+.-.+|....||.||.... -|+.+++|+-|||+..-
T Consensus 2 M~~~~~~~~~~~r~~Il~aA~------------~lf~~~G~~~~s~~~IA~~a---------Gvs~~tlY~~F~sKe~L 59 (197)
T 2hyt_A 2 MVRRTRAEMEETRATLLATAR------------KVFSERGYADTSMDDLTAQA---------SLTRGALYHHFGDKKGL 59 (197)
T ss_dssp ---CCHHHHHHHHHHHHHHHH------------HHHHHHCTTTCCHHHHHHHH---------TCCTTHHHHHHSSHHHH
T ss_pred CCchHHHhHHHHHHHHHHHHH------------HHHHHhCcccCCHHHHHHHh---------CCCHHHHHHHcCCHHHH
Confidence 555544456677777765322 22333588888888887765 47788899999997654
No 283
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=37.02 E-value=35 Score=22.96 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAA 165 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aa 165 (225)
.+|.+++.+|+.++-.|+-+...=+-.+|..|...++.+...+.-+
T Consensus 12 ~EL~~~l~elk~Elf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl 57 (63)
T 3r8s_Y 12 EELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLL 57 (63)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTCCSCGGGTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHHHHH
Confidence 5677778888888888877766633347999999999988776543
No 284
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=36.81 E-value=18 Score=29.89 Aligned_cols=34 Identities=9% Similarity=0.219 Sum_probs=26.2
Q ss_pred ccCCCcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 36 GPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
|..-||+.++|.+.|+.|+++|+|... -|.+.|.
T Consensus 36 a~~~~vSr~tvr~Al~~L~~~g~i~~~-~g~G~~V 69 (239)
T 3bwg_A 36 MAQFEVSKSTITKSLELLEQKGAIFQV-RGSGIFV 69 (239)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSEEEE-TTTEEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHCCcEEEe-CCceEEE
Confidence 333699999999999999999999764 3444433
No 285
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=36.77 E-value=8.1 Score=30.11 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=26.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAG 78 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~ 78 (225)
|+.+..-..+++|.+||+-= ..+...+|...-||.||-... -|+.+++|+-|||+..
T Consensus 1 M~r~~~~~~~~~r~~Il~aA------------~~lf~~~G~~~~s~~~IA~~a---------GvskgtlY~~F~sKe~ 57 (210)
T 2wui_A 1 MARKTKEESQKTRDGILDAA------------ERVFLEKGVGTTAMADLADAA---------GVSRGAVYGHYKNKIE 57 (210)
T ss_dssp --------CTHHHHHHHHHH------------HHHHHHSCTTTCCHHHHHHHH---------TSCHHHHHHHCSSHHH
T ss_pred CCCCchhhhHHHHHHHHHHH------------HHHHHHcCccccCHHHHHHHh---------CCCHHHHHHHcCCHHH
Confidence 44433334456778876431 122222465666666665543 3555666777776543
No 286
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=36.74 E-value=53 Score=25.35 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhhccC----ccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 7 LSLEEKRGKILEIFYESQD----FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~----~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.|++++....|..+..... .+|.++ +|.--|++..+|--++..|.++|+|...+
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~---lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 203 (220)
T 3dv8_A 146 KSLDKRVASFLLEETSIEGTNELKITHET---IANHLGSHREVITRMLRYFQVEGLVKLSR 203 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSEECCCHHH---HHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHHHHHhhhhcCCceecCCHHH---HHHHhCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 3556665555555544322 345444 44446999999999999999999998753
No 287
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=36.59 E-value=43 Score=25.59 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCCCCC-CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSKKRG-LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~~Kg-lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
|||+.. -..+++|.+||+-- ..+...+|....||.||.+.. -|+-+.+|.-|||+..-
T Consensus 1 MM~~~~~~~~~~~r~~Il~aA------------~~lf~~~Gy~~ts~~~IA~~a---------gvs~gtlY~yF~sKe~L 59 (205)
T 1rkt_A 1 MSPKVTKEHKDKRQAEILEAA------------KTVFKRKGFELTTMKDVVEES---------GFSRGGVYLYFSSTEEM 59 (205)
T ss_dssp -CCTTHHHHHHHHHHHHHHHH------------HHHHHHHCSTTCCHHHHHHHH---------TSCHHHHHTTCSCHHHH
T ss_pred CCccccHHHHHHHHHHHHHHH------------HHHHHHcCcccCCHHHHHHHH---------CCCcchhhhhCCCHHHH
Confidence 787631 11356777776532 223333588889999988764 36778899999997654
Q ss_pred h
Q 027291 80 Q 80 (225)
Q Consensus 80 ~ 80 (225)
-
T Consensus 60 ~ 60 (205)
T 1rkt_A 60 F 60 (205)
T ss_dssp H
T ss_pred H
Confidence 3
No 288
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=36.40 E-value=1.2e+02 Score=21.90 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 86 RKLESDLQSSKKRHTELVEQCNALKKG-REESDEREEALEELKAVELKHIELKDEM 140 (225)
Q Consensus 86 ~~l~~~i~~~~~~i~~l~~~ie~~k~~-r~~~~eR~~ll~~l~~L~~~~~~l~~el 140 (225)
..++.-+++++.-+.+|...|...... ..+-..|...++ +++.++..++.++
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~---~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVK---NIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 345555555556666666666665543 223446666554 3445555555554
No 289
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=36.07 E-value=71 Score=23.74 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
++....+++|.+||+-.. .+....|+...||.+|-+.. .|..+.+|+-|||...--
T Consensus 10 ~~~~~~~~~r~~Il~aa~------------~l~~~~G~~~~s~~~Ia~~a---------gvs~~t~Y~~F~sK~~L~ 65 (206)
T 3kz9_A 10 RTRLSPLKRKQQLMEIAL------------EVFARRGIGRGGHADIAEIA---------QVSVATVFNYFPTREDLV 65 (206)
T ss_dssp CCCCCHHHHHHHHHHHHH------------HHHHHSCCSSCCHHHHHHHH---------TSCHHHHHHHCCSHHHHH
T ss_pred CCcCCHHHHHHHHHHHHH------------HHHHhcCcccccHHHHHHHh---------CCCHHHHHHHcCCHHHHH
Confidence 345789999999987433 34444688888999887765 467788999999976433
No 290
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.88 E-value=41 Score=30.69 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHH
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKG-REESDEREEALEELKAVE 130 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~-r~~~~eR~~ll~~l~~L~ 130 (225)
+...+...+.++.+++++++.++..++..++..... +....+|..+-+++.+|+
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666777777777777777777777766666542 223345666666666654
No 291
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=35.86 E-value=58 Score=28.52 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 118 EREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
+.+.+.++...|++++++|+.+.++...
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455555555555555555555444443
No 292
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=35.63 E-value=27 Score=23.67 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHH
Q 027291 125 ELKAVELKHIELKDEMGQYADN-DPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 125 ~l~~L~~~~~~l~~el~~~~~~-Dp~~i~~~k~~~~~~k~aan 166 (225)
++..+++++..+..+|+.|..- +|+ ++.++++..-.++.+.
T Consensus 27 elaafekeiaafeselqaykgkgnpe-vealrkeaaairdelq 68 (73)
T 2a3d_A 27 ELAAFEKEIAAFESELQAYKGKGNPE-VEALRKEAAAIRDELQ 68 (73)
T ss_dssp THHHHHHHHHHHHHHHHHSSSCCSST-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHH
Confidence 4677788888899999988754 563 4556655555555443
No 293
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=35.56 E-value=19 Score=28.43 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=21.0
Q ss_pred cchhcHHHHHHHhhhcCccccc
Q 027291 41 VITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 41 I~~~~VKdvlQ~LVDDglV~~E 62 (225)
++..+|.+.||.|..+|+|...
T Consensus 93 vSr~tVR~AL~~Le~~GlV~~~ 114 (150)
T 2v7f_A 93 AGGSIIRKALQQLEAAGFVEKV 114 (150)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEE
T ss_pred cchHHHHHHHHHHHHCCCEEEe
Confidence 9999999999999999999876
No 294
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=35.37 E-value=2.2e+02 Score=26.59 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027291 77 AGNQLRNVYRKLESDLQSSKKRHTEL 102 (225)
Q Consensus 77 ~~~~~~~~~~~l~~~i~~~~~~i~~l 102 (225)
..+.++.+++.|+++...+.+.|..+
T Consensus 78 ~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 78 ELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555543
No 295
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=35.28 E-value=89 Score=20.08 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027291 123 LEELKAVELKHIELKDEM 140 (225)
Q Consensus 123 l~~l~~L~~~~~~l~~el 140 (225)
.+.++.....+..++.++
T Consensus 39 ~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 39 FEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 296
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=34.83 E-value=1.4e+02 Score=22.24 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=35.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
||+++.- +++|.+|++-.. .+...+|+...||.+|.+.. .|+.+.+|+-|||+..--
T Consensus 1 Mm~r~~~--~~~r~~Il~aa~------------~l~~~~G~~~~ti~~IA~~a---------gvs~~t~Y~~F~sK~~L~ 57 (193)
T 2dg8_A 1 MATGHTD--PQRRERILAATL------------DLIAEEGIARVSHRRIAQRA---------GVPLGSMTYHFTGIEQLL 57 (193)
T ss_dssp ------C--TTHHHHHHHHHH------------HHHHHHCGGGCCHHHHHHHH---------TSCTHHHHHHCSSHHHHH
T ss_pred CCCCCCC--hhHHHHHHHHHH------------HHHHHhChhhccHHHHHHHh---------CCCchhhheeCCCHHHHH
Confidence 7775322 367888876433 33444688889999887765 467889999999976543
No 297
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=34.41 E-value=47 Score=24.94 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=37.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
|.+|+.-..+++|.+|++-.. .+...+|....||.||-+.. -|+.+.+|.-|||+..--
T Consensus 2 m~~~~~~~~~~~r~~Il~aa~------------~l~~~~G~~~~t~~~Ia~~a---------gvs~~t~Y~~F~sK~~L~ 60 (202)
T 3lwj_A 2 MPIPLEKQNKERRQKILTCSL------------DLFIEKGYYNTSIRDIIALS---------EVGTGTFYNYFVDKEDIL 60 (202)
T ss_dssp -------CHHHHHHHHHHHHH------------HHHHHHCTTTCCHHHHHHHH---------CSCHHHHHHHCSSHHHHH
T ss_pred CCcccccccHHHHHHHHHHHH------------HHHHHcCcccCCHHHHHHHh---------CCCchhHHHHcCCHHHHH
Confidence 445555678888999876433 23334577888888887654 367788999999976443
No 298
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=33.99 E-value=63 Score=22.79 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=36.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCc----cchHHHHhhccCCCcchhcHHHHHHHhhhcCc
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDF----YLLKELEKLGPKKGVITQSVKDVVQSLVDDDL 58 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~----ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDgl 58 (225)
||+++..|.|.|..-+..++....+. .++. .+|.+-||++.+|---+...-.+|.
T Consensus 1 M~~~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~---~va~~~gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 1 MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATIC---SIAPKIGCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH---HHHHHHTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccccccccccHH---HHHHHHCcCHHHHHHHHHHHHhccc
Confidence 78888899999876555444332111 2333 4556679999999988887766554
No 299
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.96 E-value=92 Score=21.75 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=15.0
Q ss_pred CccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 57 DLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQC 106 (225)
Q Consensus 57 glV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~i 106 (225)
|+...+-+|| ...++..+..-.++|......|.+++..|
T Consensus 11 ~~~~~~~mgt-----------i~eLq~~L~~K~eELr~kd~~I~eLEk~L 49 (72)
T 3nmd_A 11 GMASIEGRGS-----------LRDLQYALQEKIEELRQRDALIDELELEL 49 (72)
T ss_dssp --------CH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666 34444444444444444444455544444
No 300
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=33.55 E-value=1.1e+02 Score=20.40 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027291 93 QSSKKRHTELVEQCNAL 109 (225)
Q Consensus 93 ~~~~~~i~~l~~~ie~~ 109 (225)
++++++..+|..+|++.
T Consensus 28 eelkkkweelkkkieel 44 (67)
T 1lq7_A 28 EELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444433
No 301
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=33.42 E-value=87 Score=25.46 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.+|.+++.+|++++-.|+-+...=+-.+|..|...+++|...+.-++
T Consensus 76 eEL~ekL~eLKkELFnLRfQkATGQLeNpsrIR~VRRdIARIkTVLr 122 (173)
T 3bbo_Z 76 EQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKR 122 (173)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence 46667777777777777766655444578888888888888777554
No 302
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=33.42 E-value=59 Score=25.98 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccccc
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIG 65 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiG 65 (225)
+-|||..+ -.||.+++... --+.+||-... ||...+|--+|+.|+..|+|...+..
T Consensus 43 ~~gLt~~q--~~iL~~L~~~~-~~t~~eLa~~l---~i~~stvs~~l~~Le~~GlV~r~~~~ 98 (207)
T 2fxa_A 43 PYDLNINE--HHILWIAYQLN-GASISEIAKFG---VMHVSTAFNFSKKLEERGYLRFSKRL 98 (207)
T ss_dssp GGTCCHHH--HHHHHHHHHHT-SEEHHHHHHHT---TCCHHHHHHHHHHHHHHTSEEEECC-
T ss_pred HcCCCHHH--HHHHHHHHHCC-CcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 34777765 46777777654 46788887764 88999999999999999999887663
No 303
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=33.19 E-value=8.8 Score=30.08 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 2 SKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 2 m~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
||+ ..+.+++|.+||+-= ..+...+|+...|+.+|.+.. -|+.+.+|+-|||+..--
T Consensus 1 Mp~-~~~~~~~r~~Il~aA------------~~lf~~~G~~~~s~~~IA~~a---------Gvs~gtlY~yF~sKe~L~ 57 (209)
T 2gfn_A 1 VPK-IVDHDERRRALADAV------------LALIAREGISAVTTRAVAEES---------GWSTGVLNHYFGSRHELL 57 (209)
T ss_dssp ----CCCCCHHHHHHHHHH------------HHHHHHHCGGGCCHHHHHHHH---------SSCHHHHHHHTSSHHHHH
T ss_pred CCC-cccHHHHHHHHHHHH------------HHHHHHhCcccCCHHHHHHHH---------CCCcchHHhcCCCHHHHH
Confidence 444 356678888887532 222233588888888887765 366778899999976543
No 304
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=33.16 E-value=94 Score=23.83 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHh
Q 027291 120 EEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANR 167 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanr 167 (225)
.+|.+++.+|..++-.|+-+...=+-.+|..|...+.+|...+..++-
T Consensus 17 eEL~~~L~eLK~ELf~LRfq~atgqlen~~rIr~vRRdIARi~Tvl~e 64 (124)
T 3iz5_c 17 DDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINA 64 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888877776554444789999999999888876653
No 305
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=32.98 E-value=1.4e+02 Score=21.57 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q 027291 116 SDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 116 ~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
...|.++..-+++|+..+..|..-+.-...++|..|..-++-+..++..++
T Consensus 35 ~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~ 85 (95)
T 2c5k_T 35 DDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLD 85 (95)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 366889999999999999999999998888889888888887777776644
No 306
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.60 E-value=1.1e+02 Score=20.32 Aligned_cols=17 Identities=18% Similarity=0.050 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027291 121 EALEELKAVELKHIELK 137 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~ 137 (225)
.|-.++..|+.++..|+
T Consensus 41 ~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 41 ALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 307
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=32.60 E-value=29 Score=26.46 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccC-C--CcchhcHHHHHHH
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPK-K--GVITQSVKDVVQS 52 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pK-k--GI~~~~VKdvlQ~ 52 (225)
++.||.++|+ .|++++++.+.-.+..+|=+.+.. - ||...||-++|..
T Consensus 9 R~~lT~~qK~-~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 9 RRAITEHEKR-ALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp SSCCCSHHHH-HHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CccCCHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 3569999985 566777666666788888885544 2 6777788887765
No 308
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=32.48 E-value=2.1e+02 Score=23.45 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027291 84 VYRKLESDLQSSKKRHTELV 103 (225)
Q Consensus 84 ~~~~l~~~i~~~~~~i~~l~ 103 (225)
.+..++.++++....-.+|+
T Consensus 25 ~~~~le~El~EFqesSrELE 44 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELE 44 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333333
No 309
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=32.44 E-value=1.6e+02 Score=22.31 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=41.9
Q ss_pred HHHHHHhhccCccc---hHHHHhh-ccC-CCcchhcHHHHHHHhhhcCccccccc---ccee---eEEcccchhhh
Q 027291 15 KILEIFYESQDFYL---LKELEKL-GPK-KGVITQSVKDVVQSLVDDDLVLKDKI---GTSV---YFWSLPSCAGN 79 (225)
Q Consensus 15 ril~~f~e~~~~yt---lKELEK~-~pK-kGI~~~~VKdvlQ~LVDDglV~~EKi---GssN---~YWsFps~~~~ 79 (225)
-||.++.+ ...|- +.+|... .+- -.|+.-+|==+|-.|.+||+|.+++. |..- -|.++......
T Consensus 22 ~IL~ll~~-~p~YGYeI~~~L~e~~~~~~~~is~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~ 96 (122)
T 1bm9_A 22 YMITMTEQ-ERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAA 96 (122)
T ss_dssp HHHHHHHT-TCCBSTTHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHH
T ss_pred HHHHHHcc-CCchHHHHHHHHHHhhccCcccCCcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhh
Confidence 35555544 44444 3455433 222 56778899999999999999999988 4432 66677665444
No 310
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=32.10 E-value=48 Score=29.21 Aligned_cols=58 Identities=9% Similarity=0.173 Sum_probs=47.7
Q ss_pred HHHHHHHHHHH----HhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccce
Q 027291 9 LEEKRGKILEI----FYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTS 67 (225)
Q Consensus 9 ~eEKr~ril~~----f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGss 67 (225)
++|.+..||+. +-.++.+=..++|=+..+= |+++.||.-.+..|-+.|+|..---|.+
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l-~VS~aTIRrDL~~LE~~GlL~r~HgsAg 76 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNI-EFSSATIRNDMKKLEYLGYIYQPHTSAG 76 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCC-CSCHHHHHHHHHHHHHTTSEECCSSCSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCC-CCCHHHHHHHHHHHHHCCCEEEccCcce
Confidence 46899999995 4556778888888766543 7899999999999999999988777665
No 311
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=32.01 E-value=45 Score=29.75 Aligned_cols=47 Identities=15% Similarity=0.322 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
=+.+||..++... .-|-.||-+ ..|++..||-.++..|+++|+|...
T Consensus 40 n~~~il~~l~~~~-~~sr~ela~---~~gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 40 NAGRVYKLIDQKG-PISRIDLSK---ESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcC-CcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3457999998865 458888655 3699999999999999999999764
No 312
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.87 E-value=1.3e+02 Score=21.10 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 91 DLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 91 ~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
+++..+..+..++..+...+. +-...+.+++.|-.-.-.|..|+..|..
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~------e~~~ql~EYq~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRA------RMQQQLDEYQELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444455555555555554433 3344566666666666677777766653
No 313
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=31.83 E-value=90 Score=24.39 Aligned_cols=64 Identities=27% Similarity=0.268 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhccCCCcc--hhcHHHHHHHhhhcCccccccccceeeEEcccchhh
Q 027291 10 EEKRGKILEIFYESQDFYLLKELEKLGPKKGVI--TQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAG 78 (225)
Q Consensus 10 eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~--~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~ 78 (225)
++...+|++++. .+.+.|..||=....+.||. ..||-=-|..| |+|.+-- +.+.|++++|++..
T Consensus 4 ~~R~~~I~~li~-~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL---~~vKv~~-~~g~~~Y~lp~~~~ 69 (149)
T 1b4a_A 4 GQRHIKIREIIM-SNDIETQDELVDRLREAGFNVTQATVSRDIKEM---QLVKVPM-ANGRYKYSLPSDQR 69 (149)
T ss_dssp CHHHHHHHHHHH-HSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT---TCEEEEC-SSSCEEEECTTCSS
T ss_pred HHHHHHHHHHHH-HCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHc---CCeEEEC-CCCCEEEEeCCCCC
Confidence 345666777665 56678999999988886664 66776666666 7887743 56889999998743
No 314
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.60 E-value=88 Score=18.94 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQC 106 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~i 106 (225)
+++.+.++|-.+...++.+...|+.-+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 444444444444444444444444433
No 315
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=31.53 E-value=24 Score=28.85 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.3
Q ss_pred ccCCCcchhcHHHHHHHhhhcCcccc
Q 027291 36 GPKKGVITQSVKDVVQSLVDDDLVLK 61 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVDDglV~~ 61 (225)
|..-||+-.+|.|.|+.|..+|+|.+
T Consensus 35 a~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 35 SETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 33369999999999999999999998
No 316
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=31.52 E-value=1.8e+02 Score=22.42 Aligned_cols=47 Identities=11% Similarity=0.014 Sum_probs=30.8
Q ss_pred cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 24 QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 24 ~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
...|+++|+-++. ||++.++.=+- +.||+...+..++ |..|......
T Consensus 9 ~~~~~i~e~A~~~---gvs~~TLR~ye----~~Gll~p~r~~~g--~R~Y~~~dl~ 55 (154)
T 2zhg_A 9 KALLTPGEVAKRS---GVAVSALHFYE----SKGLITSIRNSGN--QRRYKRDVLR 55 (154)
T ss_dssp -CCBCHHHHHHHH---TSCHHHHHHHH----HTTSSCCEECTTS--CEEBCTTHHH
T ss_pred ccCCCHHHHHHHH---CcCHHHHHHHH----HcCCCCcccCCCC--CEEeCHHHHH
Confidence 4579999876654 99988887663 4599987764333 4556554433
No 317
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=31.34 E-value=1.4e+02 Score=21.21 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=43.8
Q ss_pred HHHHHHHhhc-cCccch-HHHHhhccCCCcchhcHHHHHHHhhhcCccccccc---cceeeEEcccchhhhh
Q 027291 14 GKILEIFYES-QDFYLL-KELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI---GTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 14 ~ril~~f~e~-~~~ytl-KELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi---GssN~YWsFps~~~~~ 80 (225)
-.||.++.+. ..+|.+ ++|+. .-+|++-+|=-+|..|.++|+|..... |-...|++.-......
T Consensus 12 ~~IL~~L~~~~~~gyel~~~l~~---~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~ 80 (108)
T 3l7w_A 12 YLILAIVSKHDSYGYDISQTIKL---IASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKH 80 (108)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTT---TCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHH---HhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHH
Confidence 3567777653 234443 34443 268899999999999999999998764 3345677777665444
No 318
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=31.21 E-value=1.9e+02 Score=22.66 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
+..|+..++.++....+.+..++-.
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iV 37 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIV 37 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655555544
No 319
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.18 E-value=1.7e+02 Score=22.17 Aligned_cols=44 Identities=11% Similarity=-0.010 Sum_probs=26.3
Q ss_pred cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhh
Q 027291 27 YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAG 78 (225)
Q Consensus 27 ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~ 78 (225)
|+++|+-++ .||++-++.=+- ..||+..-..+. |=|..|.....
T Consensus 3 ~~I~e~A~~---~gvs~~tLR~Ye----~~GLl~p~~r~~-~g~R~Y~~~dl 46 (142)
T 3gp4_A 3 LNIKEASEK---SGVSADTIRYYE----RIGLIPPIHRNE-SGVRKFGAEDL 46 (142)
T ss_dssp BCHHHHHHH---HTSCHHHHHHHH----HHTSSCCCCBCT-TSCBCBCHHHH
T ss_pred CcHHHHHHH---HCcCHHHHHHHH----HCCCCCCCcCCC-CCCeeeCHHHH
Confidence 666666544 588888887664 349998743333 23445554433
No 320
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=31.14 E-value=1.5e+02 Score=21.48 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=47.3
Q ss_pred HHHHHHhhc-cCccchH-HHHhhccC-CCcchhcHHHHHHHhhhcCccccccc----cceeeEEcccchhhhhHH
Q 027291 15 KILEIFYES-QDFYLLK-ELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKI----GTSVYFWSLPSCAGNQLR 82 (225)
Q Consensus 15 ril~~f~e~-~~~ytlK-ELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKi----GssN~YWsFps~~~~~~~ 82 (225)
.||.++.+. ...|.|. .|+..... -+|++-+|=-+|..|.++|+|..... |-..-|++........+.
T Consensus 16 ~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 90 (116)
T 3f8b_A 16 ILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMR 90 (116)
T ss_dssp HHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHH
Confidence 467777653 4556554 56665544 68899999999999999999998742 344667777766655433
No 321
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=31.05 E-value=1.2e+02 Score=22.17 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=32.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
||++++- ++|.+|++-.. .+....|....||.+|-+.. .|+.+.+|+-|||+..-
T Consensus 1 MM~~r~~---~~r~~Il~aa~------------~l~~~~G~~~~t~~~Ia~~a---------gvs~~t~Y~~F~sK~~L 55 (183)
T 1zk8_A 1 MMSPRIG---LTLQKIVETAA------------EIADANGVQEVTLASLAQTL---------GVRSPSLYNHVKGLQDV 55 (183)
T ss_dssp -----CC---CCHHHHHHHHH------------HHHHHHCGGGCCHHHHHHHH---------TSCHHHHTTTCSSHHHH
T ss_pred CCCchhH---HHHHHHHHHHH------------HHHHhcCccccCHHHHHHHc---------CCCchHHHHHcCCHHHH
Confidence 7886532 34556654332 23333577888998887765 47788899999997643
No 322
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=30.99 E-value=1.4e+02 Score=20.90 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 120 EEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
...+.++++|-.-.-.|..|+..|.
T Consensus 50 ~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 50 ARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3445555555555556666666655
No 323
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=30.94 E-value=22 Score=27.08 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=34.5
Q ss_pred CC-HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 7 LS-LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 7 lS-~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
|+ .+++|.+|++-.. .+...+|....||.||.+.. -|+.+++|.-|||+..-
T Consensus 8 m~~~~~~r~~Il~aa~------------~lf~~~G~~~~tv~~Ia~~a---------gvs~~t~Y~~F~sK~~L 60 (195)
T 2iu5_A 8 MEKSIITQKIIAKAFK------------DLMQSNAYHQISVSDIMQTA---------KIRRQTFYNYFQNQEEL 60 (195)
T ss_dssp CCTTSHHHHHHHHHHH------------HHHHHSCGGGCCHHHHHHHH---------TSCGGGGGGTCSSHHHH
T ss_pred ccccHHHHHHHHHHHH------------HHHHhCCCCeeCHHHHHHHh---------CCCHHHHHHHcCCHHHH
Confidence 44 4678888876443 33444577778888877654 36777888888886543
No 324
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=30.92 E-value=2.2e+02 Score=23.28 Aligned_cols=23 Identities=0% Similarity=-0.048 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027291 122 ALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 122 ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
.....++|+.-+-.++..|..+.
T Consensus 144 ~~e~kn~le~~i~~~~~~l~~~~ 166 (219)
T 4e81_A 144 LVQTRNQGDHLLHSTRKQVEEAG 166 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444
No 325
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=30.82 E-value=1e+02 Score=23.68 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEMGQY-ADNDPAAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~-~~~Dp~~i~~~k~~~~~~k~aan 166 (225)
.+|.+++.+|..++-.|+-+...= +-.+|..|...+.+|...+..++
T Consensus 16 eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~ 63 (124)
T 4a17_U 16 EQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIIN 63 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHH
Confidence 467777778888887777766554 33478999999999988877665
No 326
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=30.65 E-value=1.1e+02 Score=30.50 Aligned_cols=77 Identities=9% Similarity=-0.015 Sum_probs=47.1
Q ss_pred cceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 65 GTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALK-KGREESDEREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 65 GssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k-~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
+...+|=. -...........+|.+++..+++.+..++.++.... ..+-+.+-...--+++.+++.+++.++..|+.+
T Consensus 784 ~~~~~~~~--~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (862)
T 1gax_A 784 PRVTARMP--LEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQI 861 (862)
T ss_dssp SSEEEEEE--CCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEE--eccccCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445533 333445666777888888888888888877765532 122233334444455677777777777777654
No 327
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=30.63 E-value=3e+02 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 027291 147 DPAAFEAMKNAIEVAHAAANRWTDNIF 173 (225)
Q Consensus 147 Dp~~i~~~k~~~~~~k~aanrwTDNI~ 173 (225)
||+..+....++..+...+..+...+.
T Consensus 67 D~e~~~~a~~e~~~l~~~~~~le~~l~ 93 (354)
T 3d5a_X 67 DPELKEMAKAEREALLARKEALEKELE 93 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666656556666665555555554433
No 328
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=30.59 E-value=1.6e+02 Score=22.37 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=19.7
Q ss_pred cCccchHHHHhhcc----C-CCcchhcHHHHHHHh
Q 027291 24 QDFYLLKELEKLGP----K-KGVITQSVKDVVQSL 53 (225)
Q Consensus 24 ~~~ytlKELEK~~p----K-kGI~~~~VKdvlQ~L 53 (225)
.-+|+-.+|+.+.- + .|++...|++++..+
T Consensus 38 ~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~ 72 (142)
T 3gp4_A 38 VRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALF 72 (142)
T ss_dssp CBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45677777775422 2 687777777777654
No 329
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=30.42 E-value=10 Score=29.38 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=7.8
Q ss_pred CCC--CCCCCHHHHHHHHHHH
Q 027291 1 MSK--KRGLSLEEKRGKILEI 19 (225)
Q Consensus 1 mm~--~KglS~eEKr~ril~~ 19 (225)
||+ ++.-..+++|.+||+-
T Consensus 3 mm~~~~~~~~~~~~r~~Il~a 23 (221)
T 3c2b_A 3 MASDPITTQEFSPRQNAVLDQ 23 (221)
T ss_dssp -----------CHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHH
Confidence 665 3345667888888764
No 330
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=30.35 E-value=2e+02 Score=22.68 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=26.7
Q ss_pred hhccCCCcchhcHHHHHHHhhhcCccccc-cccce
Q 027291 34 KLGPKKGVITQSVKDVVQSLVDDDLVLKD-KIGTS 67 (225)
Q Consensus 34 K~~pKkGI~~~~VKdvlQ~LVDDglV~~E-KiGss 67 (225)
.+|..=||+..+|.|.|+.|..+|+|... .-|+.
T Consensus 40 ~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~ 74 (218)
T 3sxy_A 40 ELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFF 74 (218)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceE
Confidence 33444799999999999999999999865 34443
No 331
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.09 E-value=1.8e+02 Score=22.13 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHHh
Q 027291 120 EEALEELKAVELKHIELKDEMGQYA-DNDPAAFEAMKNAIEVAHAAANR 167 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el~~~~-~~Dp~~i~~~k~~~~~~k~aanr 167 (225)
.+|.+++.+|..++-.|+-+...=+ -.+|..|...+.+|...+.-++-
T Consensus 15 eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~e 63 (123)
T 2zkr_v 15 EELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQ 63 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888887766542 35899999999999888776543
No 332
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=29.97 E-value=49 Score=29.15 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=33.2
Q ss_pred ccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccch
Q 027291 36 GPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSC 76 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~ 76 (225)
+...||..-+|=++|+.|.+-|+|.... |.-..|.+-|-.
T Consensus 39 a~~~gv~~~~Vy~~L~~L~~~GlV~~~~-g~p~~y~av~p~ 78 (342)
T 3qph_A 39 STKSGIPYNRVYDTISSLKLRGFVTEIE-GTPKVYAAYSPR 78 (342)
T ss_dssp SSSTTSSSCSCCHHHHHHHHHTSEEEEC-CTTCEEEECCHH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEEEc-CceeEEEEcCHH
Confidence 3448999999999999999999999875 666777777754
No 333
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=29.21 E-value=1.9e+02 Score=21.99 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
....++.|..+++.+.+.-.. ++...+. ..+.....|++..++...+..--.++.+-.+.
T Consensus 7 i~~~l~~Leae~q~L~~~E~q---ry~~eka---~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~ 66 (119)
T 3etw_A 7 LVGELQALDAEYQNLANQEEA---RFNEERA---QADAARQALAQNEQVYNELSQRAQRLQAEANT 66 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555666666555443222 2322222 12344566666777777766666666665544
No 334
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=29.01 E-value=1.2e+02 Score=27.16 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMG 141 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~ 141 (225)
..-++.++++++++.+++.+++..++ +.+++ .+...++.+++++++.+++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIE----KRPEN---KKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HCTTC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----hCccc---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777763 22222 3334555555666555555443
No 335
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.99 E-value=1.8e+02 Score=21.72 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC-CCcHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKK--GR-EESDEREEAL---EELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~--~r-~~~~eR~~ll---~~l~~L~~~~~~l~~el~~ 142 (225)
-..+++|++++...+..+.....++..+.. ++ +|.-....+- .....|+..+.+|+..|+.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777887777777777777777655 23 2332222222 2244556666666655543
No 336
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.90 E-value=2.1e+02 Score=22.40 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 027291 119 REEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQW 178 (225)
Q Consensus 119 R~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~ 178 (225)
....++++.+|+.++.....++. ..+.+....+......+...++++.-.+.+
T Consensus 87 eeeQ~~ri~~Le~E~~~~~~el~-------~~v~eae~ll~~v~~~l~~ia~~~l~~r~~ 139 (151)
T 1yke_B 87 AEEQLRKIDMLQKKLVEVEDEKI-------EAIKKKEKLLRHVDSLIEDFVDGIANSKKS 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTCCCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 35677888999999999888884 467777888888888899999988766554
No 337
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=28.76 E-value=98 Score=18.56 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQC 106 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~i 106 (225)
+.++....+++|++++....-|+.+|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 44556666677777776666666655
No 338
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.74 E-value=1.9e+02 Score=21.99 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 027291 123 LEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVA 161 (225)
Q Consensus 123 l~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~ 161 (225)
..++++|+.++..|..+|...+ +.++++++++..+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~----ae~erlr~~~~~~ 104 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDAS----AEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhchhh
Confidence 4456677777777776665544 4566666665543
No 339
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=28.63 E-value=18 Score=28.36 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=36.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
||+++ -+ ++.|.+||+-.. .+....|....||.+|.+.. -|+.+.+|+-|||+..-
T Consensus 20 mM~r~-~~-~~~r~~Il~AA~------------~lf~~~G~~~~t~~~IA~~a---------Gvs~~tlY~~F~sK~~L 75 (217)
T 3hta_A 20 HMPRR-HD-PERRQRIIDAAI------------RVVGQKGIAGLSHRTVAAEA---------DVPLGSTTYHFATLDDL 75 (217)
T ss_dssp SSCGG-GS-HHHHHHHHHHHH------------HHHHHHTGGGCCHHHHHHHH---------TCCHHHHHHHCSSHHHH
T ss_pred hccCC-Cc-hhHHHHHHHHHH------------HHHHHcCcccCCHHHHHHHc---------CCCcchhhhcCCCHHHH
Confidence 56543 22 337788765432 23333577888888887664 36778899999997643
No 340
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.61 E-value=1.2e+02 Score=19.69 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDE 139 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~e 139 (225)
..|-.++..|..++..|+..
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 341
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.49 E-value=1.6e+02 Score=20.96 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027291 88 LESDLQ 93 (225)
Q Consensus 88 l~~~i~ 93 (225)
|+.+|.
T Consensus 19 LeaEIq 24 (81)
T 1wt6_A 19 LEEEVL 24 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333433
No 342
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=28.43 E-value=1.5e+02 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=16.1
Q ss_pred CcHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 027291 115 ESDERE-EALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 115 ~~~eR~-~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
+-.+|- .+++++.+|++++++|+.++..+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443 55566666666666666655443
No 343
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=28.42 E-value=13 Score=27.67 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=36.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAG 78 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~ 78 (225)
|++++.-..++.|.+|++-.. .+....|+..-||.+|.... -|+.+.+|.-|||+..
T Consensus 4 M~~~~~~~~~~~r~~Il~aa~------------~lf~~~G~~~~ti~~Ia~~a---------gvs~~t~Y~~F~sK~~ 60 (156)
T 3ljl_A 4 MPKRSKEDTEITIQKIMDAVV------------DQLLRLGYDKMSYTTLSQQT---------GVSRTGISHHFPKKTD 60 (156)
T ss_dssp ----CCSHHHHHHHHHHHHHH------------HHHHHTHHHHCCHHHHHHHH---------TCCHHHHHHHCSSTHH
T ss_pred CccccchhhHhHHHHHHHHHH------------HHHHHhChhhcCHHHHHHHH---------CCCHHHHHHHCCCHHH
Confidence 334444557888888876432 23333577788888877654 3566788999999754
No 344
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=28.41 E-value=1.7e+02 Score=21.92 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=37.9
Q ss_pred cCccchHHHHhhcc----C-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHH
Q 027291 24 QDFYLLKELEKLGP----K-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKR 98 (225)
Q Consensus 24 ~~~ytlKELEK~~p----K-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~ 98 (225)
.-+|+..+|+.+.- + .|++...|++++... ++|-.. ..+....+..++..+.++++.++..
T Consensus 36 ~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~-~~~~~~-------------~~~~~~~l~~~~~~l~~~i~~L~~~ 101 (135)
T 1q06_A 36 YRTYTQQHLNELTLLRQARQVGFNLEESGELVNLF-NDPQRH-------------SADVKRRTLEKVAEIERHIEELQSM 101 (135)
T ss_dssp CEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HCTTCC-------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhh-hcCCch-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888886542 3 788877788877644 222110 1122344555555555555555555
Q ss_pred HHHHHHHH
Q 027291 99 HTELVEQC 106 (225)
Q Consensus 99 i~~l~~~i 106 (225)
...|...+
T Consensus 102 ~~~L~~~~ 109 (135)
T 1q06_A 102 RDQLLALA 109 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
No 345
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=28.28 E-value=38 Score=25.80 Aligned_cols=58 Identities=12% Similarity=0.216 Sum_probs=34.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
|.+++.-..+++|.+|++-.. .+...+|+...||.||.... .|+.+.+|+-|||+..-
T Consensus 1 M~~~~~~~~~~~r~~Il~aA~------------~lf~~~G~~~~ti~~Ia~~a---------gvs~~t~Y~~F~sK~~L 58 (216)
T 3f0c_A 1 MTDNKIKNEDGKLELIINAAQ------------KRFAHYGLCKTTMNEIASDV---------GMGKASLYYYFPDKETL 58 (216)
T ss_dssp ---------CCHHHHHHHHHH------------HHHHHHCSSSCCHHHHHHHH---------TCCHHHHHHHCSSHHHH
T ss_pred CCCccccccHHHHHHHHHHHH------------HHHHHcCCCcCCHHHHHHHh---------CCCHHHHHHHcCCHHHH
Confidence 444444455677888876433 23334577888888877654 36778899999997654
No 346
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=28.27 E-value=2.2e+02 Score=23.70 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=48.6
Q ss_pred cCccchHHHHhhcc----C-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHH
Q 027291 24 QDFYLLKELEKLGP----K-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKR 98 (225)
Q Consensus 24 ~~~ytlKELEK~~p----K-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~ 98 (225)
.-.|+-.+|+.+.- + .|++...|+++|.. . +......+...+..|.++++.++..
T Consensus 39 yR~Y~~~dl~~L~~I~~lr~~G~sL~eIk~~l~~---~-----------------~~~~~~~L~~~~~~L~~~~~~L~~~ 98 (249)
T 3qao_A 39 YRIYSEKDVDKLQQILFFKELDFPLKKIQQILDD---P-----------------LFDKNVALDMQRHLLIEKKQRIETM 98 (249)
T ss_dssp CEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC---T-----------------TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHhcc---C-----------------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888887532 2 67666666666641 0 1134556788888899999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 027291 99 HTELVEQCNALKKGR 113 (225)
Q Consensus 99 i~~l~~~ie~~k~~r 113 (225)
+..++..++....+.
T Consensus 99 ~~~l~~~i~~~~~~~ 113 (249)
T 3qao_A 99 LATLDLTIKNEKGEI 113 (249)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999988888776543
No 347
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=28.09 E-value=25 Score=29.11 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.5
Q ss_pred ccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 36 GPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 36 ~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
|..-||+.++|...|+.|+++|+|...
T Consensus 40 a~~~~vSr~tvr~Al~~L~~~G~i~~~ 66 (236)
T 3edp_A 40 QEIYSSSRTTIRRAVDLLVEEGLVVRK 66 (236)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 333699999999999999999999774
No 348
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.97 E-value=1.3e+02 Score=23.42 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027291 118 EREEALEELKAVELKHIELKDEM 140 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el 140 (225)
-|...-.....+..+++.|...|
T Consensus 61 ~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 61 LRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555444
No 349
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=27.69 E-value=2e+02 Score=21.85 Aligned_cols=48 Identities=8% Similarity=-0.035 Sum_probs=30.7
Q ss_pred CccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 25 DFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 25 ~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
..|+++|+-+++ ||++-++.=+ ...||+.--.... |=|..|.......
T Consensus 15 ~~~~I~evA~~~---gvs~~tLR~Y----e~~Gll~p~~r~~-~g~R~Y~~~dl~~ 62 (148)
T 3gpv_A 15 MYYTIGQVAKMQ---HLTISQIRYY----DKQGLFPFLQRNE-KGDRIFNEEALKY 62 (148)
T ss_dssp CCBCHHHHHHHT---TCCHHHHHHH----HHTTCCTTCEECT-TCCEEBCHHHHHH
T ss_pred CceeHHHHHHHH---CcCHHHHHHH----HHCCCCCCCcCCC-CCCeecCHHHHHH
Confidence 379999886654 9998888766 3469997433333 3355565544433
No 350
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.65 E-value=1.1e+02 Score=19.07 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027291 88 LESDLQSSKKRHTELVEQCNA 108 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~ 108 (225)
|+.+++.++++++.++.+++.
T Consensus 25 leselqalekklaalksklqa 45 (48)
T 1g6u_A 25 LESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 351
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=27.48 E-value=2.5e+02 Score=22.86 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=4.7
Q ss_pred cCccccc
Q 027291 56 DDLVLKD 62 (225)
Q Consensus 56 DglV~~E 62 (225)
+|+++++
T Consensus 90 nGiL~V~ 96 (227)
T 1u00_A 90 DGLLSVT 96 (227)
T ss_dssp TCCEEEE
T ss_pred CCcEEEE
Confidence 6777764
No 352
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=27.44 E-value=97 Score=23.57 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=25.0
Q ss_pred hccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 35 LGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 35 ~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
+|.--|++..+|--++..|.++|+|..++
T Consensus 173 iA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 173 IGQIVGCSRETVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHhCCcHHHHHHHHHHHHHCCcEEeCC
Confidence 34446999999999999999999999765
No 353
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.34 E-value=2.1e+02 Score=26.25 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTL 175 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l 175 (225)
.+|.+++.++++|+.+...+.+++.++.... +..+.++.+.+.+++.+.........+
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKG-EPVDELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999998865542 223445555555555544444443333
No 354
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=27.16 E-value=1.2e+02 Score=19.22 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 027291 150 AFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNN 182 (225)
Q Consensus 150 ~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk 182 (225)
-+++++++++.+|+.+ |.++.+.++++
T Consensus 16 IL~E~RkElqK~K~EI------IeAi~~El~~~ 42 (45)
T 1use_A 16 LLEEVKKELQKVKEEI------IEAFVQELRKR 42 (45)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHhc
Confidence 4555666666666543 55666666544
No 355
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=26.75 E-value=51 Score=25.00 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=46.7
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHH
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKL 88 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l 88 (225)
-++|-++.....- +.++ +|-..||++..|..+++.|+.-|+|.+-+ |.+-|.-+-|.... .+..-+..+
T Consensus 12 l~~L~~La~~~~~-s~~~---IA~~~~i~~~~l~kIl~~L~~aGlv~s~r-G~GGy~Lar~p~~I-tl~dVi~av 80 (145)
T 1xd7_A 12 IHILSLISMDEKT-SSEI---IADSVNTNPVVVRRMISLLKKADILTSRA-GVPGASLKKDPADI-SLLEVYRAV 80 (145)
T ss_dssp HHHHHHHHTCSCC-CHHH---HHHHHTSCHHHHHHHHHHHHHTTSEECCS-SSSSCEESSCGGGC-BHHHHHHHH
T ss_pred HHHHHHHHhCCCC-CHHH---HHHHHCcCHHHHHHHHHHHHHCCceEeec-CCCCceecCCHHHC-CHHHHHHHH
Confidence 3555556544332 4444 45567999999999999999999999887 66667777766543 333344433
No 356
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.74 E-value=2.4e+02 Score=25.05 Aligned_cols=9 Identities=11% Similarity=-0.079 Sum_probs=3.3
Q ss_pred hhhhHHHHH
Q 027291 77 AGNQLRNVY 85 (225)
Q Consensus 77 ~~~~~~~~~ 85 (225)
+....+.++
T Consensus 374 al~~~~~~i 382 (471)
T 3mq9_A 374 ALKDAQTRI 382 (471)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 357
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.70 E-value=3.2e+02 Score=24.77 Aligned_cols=9 Identities=11% Similarity=0.231 Sum_probs=4.9
Q ss_pred HHHHHHHhh
Q 027291 46 VKDVVQSLV 54 (225)
Q Consensus 46 VKdvlQ~LV 54 (225)
+++++..++
T Consensus 141 l~~~~~~li 149 (517)
T 4ad8_A 141 LQEWAQGRL 149 (517)
T ss_dssp HHHHHTTTE
T ss_pred HHHHhhhhe
Confidence 555555554
No 358
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=26.61 E-value=2.6e+02 Score=22.72 Aligned_cols=130 Identities=13% Similarity=0.203 Sum_probs=63.8
Q ss_pred CCcchhcHHHHHHHhhhc-CccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH
Q 027291 39 KGVITQSVKDVVQSLVDD-DLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESD 117 (225)
Q Consensus 39 kGI~~~~VKdvlQ~LVDD-glV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~ 117 (225)
.++...+..|+-+-|-|+ +++.. |.=.+|+ ....+..++.+...++.+. .++..++..+.
T Consensus 33 ~~L~~LS~~eL~~LL~~~~dlL~~-------~v~~l~~--~q~~~~~~e~l~s~ae~ll----~l~~~Le~~r~------ 93 (192)
T 2p22_C 33 EGINLLSSKEIIDLIQTHRHQLEL-------YVTKFNP--LTDFAGKIHAFRDQFKQLE----ENFEDLHEQKD------ 93 (192)
T ss_dssp SGGGSCTTHHHHHHHHHCHHHHHH-------HGGGGSC--CHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH------
T ss_pred HHHHhCCHHHHHHHHhChHHHHHH-------HHHhchh--HHHHHHHHHHHHHHHHHHH----HHhhhHHHHHH------
Confidence 467778888866666666 56542 1223443 3333344444433333332 22222221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH-hhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCC--CHHHHHHH
Q 027291 118 EREEALEELKAVELKHIELKDEM-GQY-ADNDPAAFEAMKNAIEVAHAAANRWTDNIFTLQQWCSNNFPQ--AKEELEQM 193 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el-~~~-~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l~~~~~kk~~~--~~~~~~~l 193 (225)
.=..++..++.|..+......++ ..+ +.+.|..+ ...+..+...++-=+++|. .+|.. +..+|+.|
T Consensus 94 ~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L---~~~L~~a~~e~eeeS~~l~-------~~F~~~~~e~dv~~F 163 (192)
T 2p22_C 94 KVQALLENARILESKYVASWQDYHSEFSKKYGDIAL---KKKLEQNTKKLDEESSQLE-------TTTRSIDSADDLDQF 163 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHH---HHHHHHHHHHHHHHHHHHH-------HSCSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH---HHHHHHHHHHHHHHHHHHH-------HHHcCCcccchHHHH
Confidence 11344555666666665555455 355 45688765 3345555555555566665 45533 25566655
Q ss_pred Hhhc
Q 027291 194 YKDV 197 (225)
Q Consensus 194 ~~~f 197 (225)
-+.|
T Consensus 164 l~~y 167 (192)
T 2p22_C 164 IKNY 167 (192)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 359
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=26.59 E-value=57 Score=26.23 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccC-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHH
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPK-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNV 84 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pK-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~ 84 (225)
-|..|.+++....-..--||.. .-|- .+|.--.|--++|||.+-|.|.. ..-=.-|||.+-++...-++.-
T Consensus 8 nR~~IYe~LFkeGV~VaKKD~~-kHpel~~vpNL~ViKamqSLkSRGyVkE-qFaWrhyYw~LTnEGIeYLR~y 79 (162)
T 2xzm_7 8 TKIRIYKQLLQDGVFVLKKDFE-GHHEETGVPNLHCYILVRSLKDRGFLEE-IFNWGFTYYYLNKEGCEYLKTK 79 (162)
T ss_dssp HHHHHHHHHHHHTEEEEESCSS-SBCTTTCCBHHHHHHHHHHHHHHTSEEE-EEETTEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcEEEecccc-CCCcccCcCcHHHHHHHhcccccccccc-eeeeEEEEEEEchHHHHHHHHH
Confidence 4667777776654443334433 3333 56777888889999999999864 4445568999988776555443
No 360
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=26.15 E-value=1.9e+02 Score=20.98 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=46.2
Q ss_pred HHHHHHHhh-ccCccch-HHHHhhccCCCcchhcHHHHHHHhhhcCccccccc----cceeeEEcccchhhhhH
Q 027291 14 GKILEIFYE-SQDFYLL-KELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI----GTSVYFWSLPSCAGNQL 81 (225)
Q Consensus 14 ~ril~~f~e-~~~~ytl-KELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi----GssN~YWsFps~~~~~~ 81 (225)
-.||.++.+ ....|.| +.|+. ..--+|++-+|=-+|..|.++|+|..... |-..-|++........+
T Consensus 12 ~~IL~~L~~~~~~Gyei~~~l~~-~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 12 GCILYIISQEEVYGYELSTKLNK-HGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHHH-TTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH-cCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 356777764 3456666 45555 22256889999999999999999998753 44566778776655443
No 361
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.00 E-value=2.7e+02 Score=22.74 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027291 88 LESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
|.++++.++++...|+..+..+.
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~ 69 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLK 69 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554443
No 362
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=25.98 E-value=1.8e+02 Score=20.70 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=34.3
Q ss_pred CccchHHHHhhcc----C-CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHH
Q 027291 25 DFYLLKELEKLGP----K-KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRH 99 (225)
Q Consensus 25 ~~ytlKELEK~~p----K-kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i 99 (225)
-+|+..+|+.+.- + .|++...|++++.. . .......+..+++.+.++++.++..+
T Consensus 39 R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~----~----------------~~~~~~~l~~~~~~l~~~i~~l~~~~ 98 (109)
T 1r8d_A 39 RLYSDADLERLQQILFFKEIGFRLDEIKEMLDH----P----------------NFDRKAALQSQKEILMKKKQRMDEMI 98 (109)
T ss_dssp EEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC----T----------------TSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC----C----------------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888886543 2 57666666666542 0 01233455555666666666665555
Q ss_pred HHHHHHH
Q 027291 100 TELVEQC 106 (225)
Q Consensus 100 ~~l~~~i 106 (225)
..++..+
T Consensus 99 ~~l~~~~ 105 (109)
T 1r8d_A 99 QTIDRTL 105 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 363
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.84 E-value=1.6e+02 Score=20.08 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHHH
Q 027291 125 ELKAVELKHIELKDEMGQYADNDP-AAFEAMKNAIEVAHAAAN 166 (225)
Q Consensus 125 ~l~~L~~~~~~l~~el~~~~~~Dp-~~i~~~k~~~~~~k~aan 166 (225)
+...|+.++..|+.|+...+.-|- ....++++.+..+.+.+.
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele 49 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEIN 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444432 333344444444333333
No 364
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.74 E-value=1.5e+02 Score=22.76 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHh
Q 027291 123 LEELKAVELKHIELKDEMGQYAD-NDPAAFEAMKNAIEVAHAAANR 167 (225)
Q Consensus 123 l~~l~~L~~~~~~l~~el~~~~~-~Dp~~i~~~k~~~~~~k~aanr 167 (225)
-++++.|..++..++..+..... .|++.|.+...++..+...+++
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~ 54 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIAR 54 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888877665 4888888877766665554443
No 365
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=25.70 E-value=1.2e+02 Score=20.89 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 91 DLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQ 142 (225)
Q Consensus 91 ~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~ 142 (225)
.+..+..+-.+|...|..+..+...+. ++..|+++.-.|+.++..
T Consensus 18 ~f~~L~~eH~~LD~~I~~le~~~~~~~-------~l~~LKk~KL~LKDeI~~ 62 (76)
T 1zhc_A 18 HFDKIFEKHNQLDDDIKTAEQQNASDA-------EVSHMKKQKLKLKDEIHS 62 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChH-------HHHHHHHHHHHhHHHHHH
Confidence 344444444455555554443322221 344445554444444433
No 366
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.60 E-value=1.5e+02 Score=19.56 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELKDEM 140 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~~el 140 (225)
..|-.++..|+.++..|..-|
T Consensus 40 ~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 40 SALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554433
No 367
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=25.56 E-value=33 Score=24.03 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=19.1
Q ss_pred CcchhcHHHHHHHhhhcCcccc
Q 027291 40 GVITQSVKDVVQSLVDDDLVLK 61 (225)
Q Consensus 40 GI~~~~VKdvlQ~LVDDglV~~ 61 (225)
.|+...+++.|+.||.||.+.+
T Consensus 44 ~it~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 44 RITLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC
T ss_pred cCCHHHHHHHHHHHHhCCeEEE
Confidence 3678999999999999998764
No 368
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.31 E-value=84 Score=17.58 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027291 82 RNVYRKLESDLQSSKKRHTEL 102 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l 102 (225)
+.+-.+|..+|..++-+|+.|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 334444555555555444443
No 369
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=25.27 E-value=3e+02 Score=24.80 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 027291 95 SKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFT 174 (225)
Q Consensus 95 ~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~ 174 (225)
+...+...-..++.+-..=.+...|..++.+-+.|-.....+...|..++. ....++......+|..+..|-.
T Consensus 42 l~~~l~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~-------~~n~~i~~~V~~iN~l~~qIa~ 114 (463)
T 2d4y_A 42 LSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDK-------QVNIAIGSSVAQINNYAKQIAN 114 (463)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666555556778999999999999999999999988873 3445677778888888888888
Q ss_pred HHHHHHhh
Q 027291 175 LQQWCSNN 182 (225)
Q Consensus 175 l~~~~~kk 182 (225)
|=.=|.+-
T Consensus 115 LN~qI~~~ 122 (463)
T 2d4y_A 115 LNDQISRM 122 (463)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777654
No 370
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.11 E-value=1.8e+02 Score=20.35 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHH----HHhhh
Q 027291 121 EALEELKAVELKHIELKDEMGQYA--DNDPAAFEAMKNAIEVAHAA----ANRWT 169 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~--~~Dp~~i~~~k~~~~~~k~a----anrwT 169 (225)
.+-.++..|+.++..|..++..=. ..||+.+..+..+...+... ..||.
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777776521 35788887777766665544 45664
No 371
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.00 E-value=1.8e+02 Score=20.41 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 79 NQLRNVYRKLESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 79 ~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
+.++.++..+..++..++..+.++...+++..
T Consensus 11 ~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 11 QQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555443
No 372
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=24.96 E-value=1.8e+02 Score=26.30 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=35.6
Q ss_pred EEcccchhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 70 FWSLPSCAG--NQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 70 YWsFps~~~--~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
+|+=|.... .+....+..+-.....++....++....+-+.....|.+-+....+++..|+.++..+..+|..+-
T Consensus 38 ~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l~~lL 114 (371)
T 1zbt_A 38 VVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLL 114 (371)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 676554322 122233333334444455555555444443322122555677788889999999999998876654
No 373
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=24.90 E-value=1.2e+02 Score=22.99 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhhccC----------ccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 7 LSLEEKRGKILEIFYESQD----------FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~----------~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.|+.++....|-.+..... ..|.++| |.--|+++.+|=-++..|.++|+|...+
T Consensus 135 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~l---A~~lg~sr~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 135 LDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEI---GRIVGCSREMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHH---HHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHH---HHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 4566655555544433211 2344443 4446999999999999999999998764
No 374
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=24.36 E-value=2e+02 Score=20.74 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=35.5
Q ss_pred HHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc
Q 027291 13 RGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI 64 (225)
Q Consensus 13 r~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi 64 (225)
...|+.++.. ...-+..||-+. -||+..+|-..|+.|++.|+|...+.
T Consensus 10 L~~i~~l~~~-~~~~~~~ela~~---l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 10 IEQIYMLIEE-KGYARVSDIAEA---LAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp HHHHHHHHHH-HSSCCHHHHHHH---HTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHhh-cCCCCHHHHHHH---hCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 3444554443 345678877554 48999999999999999999988754
No 375
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=24.29 E-value=6.7 Score=29.67 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=11.0
Q ss_pred cchhcHHHHHHHh
Q 027291 41 VITQSVKDVVQSL 53 (225)
Q Consensus 41 I~~~~VKdvlQ~L 53 (225)
|+.|+|+|+.+.|
T Consensus 13 Lv~m~v~elN~~L 25 (107)
T 3a5t_A 13 LVTMSVRELNQHL 25 (107)
T ss_dssp HHHSCHHHHHHTT
T ss_pred HhcCCHHHHHHHH
Confidence 5789999999887
No 376
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=24.25 E-value=2.1e+02 Score=20.83 Aligned_cols=68 Identities=25% Similarity=0.307 Sum_probs=46.5
Q ss_pred HHHHHHhhc-cCccch-HHHHhhccCCCcchhcHHHHHHHhhhcCccccccc----cceeeEEcccchhhhhHHH
Q 027291 15 KILEIFYES-QDFYLL-KELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI----GTSVYFWSLPSCAGNQLRN 83 (225)
Q Consensus 15 ril~~f~e~-~~~ytl-KELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi----GssN~YWsFps~~~~~~~~ 83 (225)
-||.++... ...|.| +.|+.. .-.+|++-+|=-+|..|.++|+|..... |-.--|++........+..
T Consensus 15 ~IL~lL~~~p~~Gyei~~~l~~~-g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~ 88 (117)
T 4esf_A 15 CVLEIISRRETYGYEITRHLNDL-GFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELEL 88 (117)
T ss_dssp HHHHHHHHSCBCHHHHHHHHHHH-TCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHc-CCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHH
Confidence 467777653 456666 456655 2357889999999999999999998753 3345677877766555433
No 377
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.25 E-value=2.9e+02 Score=24.93 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIFTL 175 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~~l 175 (225)
.+|.++..++++|+.+...+.+++.+ .+.+..+.++.+.+.+++.+..-......+
T Consensus 35 ~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 35 REVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888889999888888888876 234455666666666666555444444433
No 378
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.18 E-value=1.1e+02 Score=27.90 Aligned_cols=91 Identities=10% Similarity=0.158 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 027291 86 RKLESDLQSSKKRHTELVEQCNALKKGREE--SDEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHA 163 (225)
Q Consensus 86 ~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~--~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~ 163 (225)
+.+.++++.+......+...|...-..++. .+......+..+.+..++.+++.-+.. .+..|..++..+.....
T Consensus 44 E~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~----~~~~i~~l~~~~~~~~~ 119 (409)
T 1m1j_C 44 EGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILA----HENTIQQLTDMHIMNSN 119 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHhhHH
Confidence 334444455555555555555555333211 111111123333333333333332221 23445555555554455
Q ss_pred HHHhhhhhHHHHHHHHH
Q 027291 164 AANRWTDNIFTLQQWCS 180 (225)
Q Consensus 164 aanrwTDNI~~l~~~~~ 180 (225)
.+.....-|..|...|.
T Consensus 120 ~i~~l~~~i~~l~~~~~ 136 (409)
T 1m1j_C 120 KITQLKQKIAQLESHCQ 136 (409)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55555555555555443
No 379
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=23.96 E-value=39 Score=29.66 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=36.3
Q ss_pred HHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccc
Q 027291 14 GKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKD 62 (225)
Q Consensus 14 ~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~E 62 (225)
.+||+.++ +..-|-.||-+. .|++..||-.+++.|+++|+|...
T Consensus 23 ~~il~~l~--~~~~sr~~la~~---~gls~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 23 SRILKRIM--KSPVSRVELAEE---LGLTKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp CCSHHHHH--HSCBCHHHHHHH---HTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH--cCCcCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEee
Confidence 45888888 456688887654 599999999999999999999764
No 380
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=23.64 E-value=1.9e+02 Score=20.15 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=29.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKRHTELVEQCNALKKGREESDERE-EALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~-~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
.+...++..++.|.+....+..++.. ..+.++..-...-.|. ..|.+..-.+.++..+...+..+.
T Consensus 6 ~AI~~Lr~~~d~L~kkq~~L~~~i~~---e~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE 72 (79)
T 4abm_A 6 EAIQRLRDTEEMLSKKQEFLEKKIEQ---ELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444442 2222222111112233 345555556666666666554443
No 381
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=23.62 E-value=46 Score=24.40 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=28.8
Q ss_pred hhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 34 KLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 34 K~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
.+....|....||.||.+.. -|+.+.+|+-|||+..--
T Consensus 15 ~l~~~~G~~~~t~~~Ia~~a---------gvs~~t~Y~~F~sK~~L~ 52 (170)
T 3egq_A 15 RLYMKKPPHEVSIEEIAREA---------KVSKSLIFYHFESKQKLL 52 (170)
T ss_dssp HHHTTSCGGGCCHHHHHHHH---------TSCHHHHHHHCSSHHHHH
T ss_pred HHHHhcCCccCcHHHHHHHh---------CCCchhHHHHcCCHHHHH
Confidence 34455788889999988765 368889999999976443
No 382
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=23.60 E-value=2.1e+02 Score=24.03 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhCCCCH
Q 027291 159 EVAHAAANRWTDNIFTLQQWCSNNFPQAK 187 (225)
Q Consensus 159 ~~~k~aanrwTDNI~~l~~~~~kk~~~~~ 187 (225)
....-++....|=+..|..|++..|+++.
T Consensus 109 ~l~LL~a~sl~~l~~~L~~~l~~~F~l~~ 137 (252)
T 3e98_A 109 VLDLLDATSLEDVVSTVEDSLRHEFQVPY 137 (252)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHTSCCSE
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHCCCCe
Confidence 33333444455555667777777777763
No 383
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=23.53 E-value=2.8e+02 Score=22.01 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCHH------HHHHHHHHHHHHHHHHHhhhhhHH
Q 027291 125 ELKAVELKHIELKDEMGQYADNDPA------AFEAMKNAIEVAHAAANRWTDNIF 173 (225)
Q Consensus 125 ~l~~L~~~~~~l~~el~~~~~~Dp~------~i~~~k~~~~~~k~aanrwTDNI~ 173 (225)
.+..+++++..++.+|..+.-.+|+ .+++++.+.-.++..+..-||--.
T Consensus 77 ~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A~~ 131 (158)
T 3tul_A 77 VYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATV 131 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777766773 566777777777777777777544
No 384
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=23.52 E-value=1.3e+02 Score=23.81 Aligned_cols=54 Identities=11% Similarity=0.125 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhhc-----------cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 7 LSLEEKRGKILEIFYES-----------QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~-----------~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.|++++....|-.+... .-..|.+|| |.-.|++..+|--++..|.++|+|..++
T Consensus 163 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~l---A~~lG~sr~tvsR~l~~L~~~GlI~~~~ 227 (243)
T 3la7_A 163 RDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAI---AEAIGSTRVTVTRLLGDLREKKMISIHK 227 (243)
T ss_dssp SSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHH---HHHHCCcHHHHHHHHHHHHHCCCEEEcC
Confidence 46666666555555432 113455555 4446999999999999999999999864
No 385
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.36 E-value=1.4e+02 Score=18.63 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027291 85 YRKLESDLQSSKKRHTELVEQC 106 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~i 106 (225)
-+.|++.|..++.++..|.+.+
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 386
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=23.24 E-value=1e+02 Score=22.07 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=35.6
Q ss_pred cCccchHHHHhhcc-----CCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHH
Q 027291 24 QDFYLLKELEKLGP-----KKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKR 98 (225)
Q Consensus 24 ~~~ytlKELEK~~p-----KkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~ 98 (225)
+-.|+..+|+.+.- ..|++...|++++.. .+ ......+..+++.+.++++.++..
T Consensus 37 ~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~---~~-----------------~~~~~~l~~~~~~l~~~i~~l~~~ 96 (108)
T 2vz4_A 37 HRRYSDADLDRLQQILFYRELGFPLDEVAALLDD---PA-----------------ADPRAHLRRQHELLSARIGKLQKM 96 (108)
T ss_dssp CEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC-------------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC---Cc-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888776542 256665556655531 10 123445666666777777777666
Q ss_pred HHHHHHHH
Q 027291 99 HTELVEQC 106 (225)
Q Consensus 99 i~~l~~~i 106 (225)
+..++..+
T Consensus 97 ~~~l~~~~ 104 (108)
T 2vz4_A 97 AAAVEQAM 104 (108)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 387
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=23.16 E-value=2.8e+02 Score=21.89 Aligned_cols=27 Identities=7% Similarity=0.014 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 83 NVYRKLESDLQSSKKRHTELVEQCNAL 109 (225)
Q Consensus 83 ~~~~~l~~~i~~~~~~i~~l~~~ie~~ 109 (225)
..-.+....-+.+..+|..|..++..+
T Consensus 63 ~seekasqrEd~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 63 AQAEKYSQKEDKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555443
No 388
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.15 E-value=2.3e+02 Score=21.00 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 86 RKLESDLQSSKKRHTELVEQCNALK 110 (225)
Q Consensus 86 ~~l~~~i~~~~~~i~~l~~~ie~~k 110 (225)
..+.=+++-++.++.++++.+...+
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~ 50 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESR 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444443
No 389
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=23.11 E-value=16 Score=28.33 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccc
Q 027291 8 SLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLK 61 (225)
Q Consensus 8 S~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~ 61 (225)
..++-+.+|+..+..... .+..+ +|..-|++..+|.+.|+.|.++|+|..
T Consensus 10 ~~d~l~~~Il~~l~~~~~-ls~~e---La~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 10 DLDRIDRNILNELQKDGR-ISNVE---LSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp -CCSHHHHHHHHHHHCSS-CCTTG---GGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred chhHHHHHHHHHHHhCCC-CCHHH---HHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 355667788886655443 35544 455589999999999999999999974
No 390
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=23.02 E-value=3.2e+02 Score=24.50 Aligned_cols=30 Identities=20% Similarity=0.229 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027291 115 ESDEREEALEELKAVELKHIELKDEMGQYA 144 (225)
Q Consensus 115 ~~~eR~~ll~~l~~L~~~~~~l~~el~~~~ 144 (225)
|.+-+...-+++..|+.++..+..+|..+-
T Consensus 67 D~e~~~~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 67 DPELKEMAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556677788889999999999998877654
No 391
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.78 E-value=1.7e+02 Score=20.64 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 027291 89 ESDLQSSKKRHTELV 103 (225)
Q Consensus 89 ~~~i~~~~~~i~~l~ 103 (225)
..+++.++.++..|+
T Consensus 26 q~Ql~~Lq~Ev~~LR 40 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLR 40 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 392
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.76 E-value=2.4e+02 Score=21.08 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 027291 87 KLESDLQSSKKRH 99 (225)
Q Consensus 87 ~l~~~i~~~~~~i 99 (225)
.+...+..++.++
T Consensus 42 elrr~iq~L~~el 54 (131)
T 3tnu_A 42 ELRRTMQNLEIEL 54 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 393
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.76 E-value=2.4e+02 Score=21.38 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=39.5
Q ss_pred cCccchHHHHhhc-----cCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHH
Q 027291 24 QDFYLLKELEKLG-----PKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKR 98 (225)
Q Consensus 24 ~~~ytlKELEK~~-----pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~ 98 (225)
.-+|+-.+|+.+. -..|++...|++++... ++|- . -..+....+...+..+.++++.++..
T Consensus 52 ~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~-~~~~--------~-----~~~~~~~~l~~~~~~l~~~i~~L~~~ 117 (148)
T 3gpv_A 52 DRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDWS-MEGD--------S-----TILHRLKLMKQQEANVLQLIQDTEKN 117 (148)
T ss_dssp CEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH-HHCG--------G-----GHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh-hcCC--------C-----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888887653 23687777777777643 2221 0 01233344555555666666666555
Q ss_pred HHHHHHHHHH
Q 027291 99 HTELVEQCNA 108 (225)
Q Consensus 99 i~~l~~~ie~ 108 (225)
+..+...++.
T Consensus 118 ~~~L~~~i~~ 127 (148)
T 3gpv_A 118 LKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 394
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.73 E-value=3.7e+02 Score=24.98 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 027291 117 DEREEALEELKAVELKHIELKDEMGQYADNDPAAFEAMKNAIEVAHAAANRWTDNIF 173 (225)
Q Consensus 117 ~eR~~ll~~l~~L~~~~~~l~~el~~~~~~Dp~~i~~~k~~~~~~k~aanrwTDNI~ 173 (225)
.+|.+++.++++|+.+...+.+++.++.... +..+.++.+...+++.+........
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~-~~~~~l~~~~~~l~~~i~~le~~~~ 95 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAK-EDAKDLIAEKEKLSNEKKEIIEKEA 95 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888889999999999988887765432 1123344444444444444333333
No 395
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.67 E-value=3.2e+02 Score=22.46 Aligned_cols=30 Identities=3% Similarity=0.054 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 82 RNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 82 ~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
+.+...|+++.+.++..+..+..++++.-.
T Consensus 138 ~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666655544
No 396
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=22.59 E-value=1.2e+02 Score=17.35 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027291 88 LESDLQSSKKRHTELVEQCNA 108 (225)
Q Consensus 88 l~~~i~~~~~~i~~l~~~ie~ 108 (225)
|+++...++.+++.|+.+++.
T Consensus 6 lekkcaalesklqalekklea 26 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 397
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=22.52 E-value=1.7e+02 Score=22.69 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=27.7
Q ss_pred cchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 27 YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 27 ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.|.++| |.--|++..+|--++..|.++|+|..++
T Consensus 181 ~t~~~l---A~~lg~sr~tvsR~l~~l~~~g~I~~~~ 214 (232)
T 2gau_A 181 LSREEL---ATLSNMTVSNAIRTLSTFVSERMLALDG 214 (232)
T ss_dssp CCHHHH---HHHTTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCHHHH---HHHhCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 455554 4446999999999999999999998775
No 398
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.44 E-value=2.2e+02 Score=20.50 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027291 90 SDLQSSKKRHTELVEQC 106 (225)
Q Consensus 90 ~~i~~~~~~i~~l~~~i 106 (225)
.++..++.++..++..+
T Consensus 44 ~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 399
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=22.31 E-value=29 Score=26.36 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 5 RGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 5 KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
++-..+++|.+|++-.. .+....|+...||.||.+.. .|+.+.+|.-|||...-
T Consensus 12 ~~~~~~~~r~~Il~aa~------------~l~~~~G~~~~s~~~Ia~~a---------gvs~~t~Y~~F~sK~~L 65 (212)
T 1pb6_A 12 RSRAVSAKKKAILSAAL------------DTFSQFGFHGTRLEQIAELA---------GVSKTNLLYYFPSKEAL 65 (212)
T ss_dssp ---CHHHHHHHHHHHHH------------HHHHHHCTTTCCHHHHHHHT---------TSCHHHHHHHSSSHHHH
T ss_pred ccCchHHHHHHHHHHHH------------HHHHHcCcchhhHHHHHHHH---------CCChhHHHHhCCCHHHH
Confidence 45667888899877433 33334577788888877654 46778889999996543
No 400
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.27 E-value=2.5e+02 Score=21.12 Aligned_cols=59 Identities=10% Similarity=0.154 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--CC-CCcHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 027291 85 YRKLESDLQSSKKRHTELVEQCNALKK--GR-EESDEREEAL---EELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 85 ~~~l~~~i~~~~~~i~~l~~~ie~~k~--~r-~~~~eR~~ll---~~l~~L~~~~~~l~~el~~~ 143 (225)
+++|++++...+..+.-...++..+.. ++ +|.-.-..+- .....|+..+.+|+..|...
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666655555555555555544 22 2222221111 22445566666666665543
No 401
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.18 E-value=2.5e+02 Score=20.94 Aligned_cols=20 Identities=5% Similarity=0.111 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027291 83 NVYRKLESDLQSSKKRHTEL 102 (225)
Q Consensus 83 ~~~~~l~~~i~~~~~~i~~l 102 (225)
..+.++...+..++.++..+
T Consensus 36 ~Ei~elrr~iq~L~~el~~l 55 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNV 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 402
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=22.13 E-value=1.3e+02 Score=20.48 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 118 EREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 118 eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
|=...|.+.++|+..+--++.||+-|+.
T Consensus 4 Elr~iLqERNELKa~vf~lqeEL~yY~~ 31 (65)
T 1yhn_B 4 EFEQILQERNELKAKVFLLKEELAYFQR 31 (65)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3356788889999999999999999884
No 403
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.05 E-value=1.3e+02 Score=19.73 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027291 120 EEALEELKAVELKHIELK 137 (225)
Q Consensus 120 ~~ll~~l~~L~~~~~~l~ 137 (225)
..|..++..|..++..|+
T Consensus 39 ~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 39 SELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 404
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=21.97 E-value=2.4e+02 Score=20.66 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 4 KRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 4 ~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
++....++.|.+|++-..+ +.-..|+...||.||.... -|+.+.+|.-|||...-
T Consensus 7 ~~~~~~~~~r~~Il~aa~~------------l~~~~G~~~~ti~~Ia~~a---------gvs~~t~Y~~F~sK~~L 61 (203)
T 3f1b_A 7 TKRLPRAVREQQMLDAAVD------------VFSDRGFHETSMDAIAAKA---------EISKPMLYLYYGSKDEL 61 (203)
T ss_dssp --CCCHHHHHHHHHHHHHH------------HHHHHCTTTCCHHHHHHHT---------TSCHHHHHHHCCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHH------------HHHHcCcccccHHHHHHHh---------CCchHHHHHHhCCHHHH
Confidence 4568899999999875433 3333577788888877654 36778899999997654
No 405
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=21.93 E-value=1.1e+02 Score=22.50 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 027291 122 ALEELKAVELKHIELKDEMGQYADNDP-AAFEAMKNAIEVAHAAANRWTDNIFTLQQ 177 (225)
Q Consensus 122 ll~~l~~L~~~~~~l~~el~~~~~~Dp-~~i~~~k~~~~~~k~aanrwTDNI~~l~~ 177 (225)
...+..+|+.++..|+.|+...+.-|- ..-.++++.+..+.+.+..-..++-+-.+
T Consensus 28 ~~~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks 84 (94)
T 3vlc_E 28 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENK 84 (94)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666677777766666553 55666666666666666555555444333
No 406
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.88 E-value=1.3e+02 Score=17.78 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTE 101 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~ 101 (225)
+..++++|..+...++.++..
T Consensus 5 LEdKVEell~~~~~le~EV~R 25 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 333444444444444333333
No 407
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=21.79 E-value=4.9e+02 Score=24.28 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHH
Q 027291 101 ELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYADN--DPAAFEAMKNAIEVAH 162 (225)
Q Consensus 101 ~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~~--Dp~~i~~~k~~~~~~k 162 (225)
++.+.++++-..+-+...|..++.+++-|+..++.....++.+.++ ++...+.++.....+.
T Consensus 50 ~~~~~ve~lIdq~I~~~~~~~a~~~l~gl~~~~~~y~~~~~~w~~np~~~~~~~~v~~~f~~~~ 113 (589)
T 3eb7_A 50 IFMEQVEALINQKIAEYARAKALAELEGLGNNYQLYLTALEEWQENPSSTRVLRDVRNRFEILD 113 (589)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3334455555555667788888888888888888888888888765 4444455554444443
No 408
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=21.72 E-value=32 Score=26.62 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=30.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhh
Q 027291 1 MSKKRGLSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAG 78 (225)
Q Consensus 1 mm~~KglS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~ 78 (225)
|||+ .-..+++|.+||+-..+ +...+|...-||.||.... -|+.+.+|+-|||+..
T Consensus 13 ~~~~-~~~~~~~r~~Il~AA~~------------lf~e~G~~~~s~~~IA~~A---------GVsk~tlY~~F~sKe~ 68 (207)
T 3bjb_A 13 AEPS-SEEQRARHVRMLEAAIE------------LATEKELARVQMHEVAKRA---------GVAIGTLYRYFPSKTH 68 (207)
T ss_dssp -----CCHHHHHHHHHHHHHHH------------HHHHSCGGGCCHHHHHHHH---------TCCHHHHHHHCSSHHH
T ss_pred cCCc-ccchHHHHHHHHHHHHH------------HHHHcCcccCCHHHHHHHh---------CCCHHHHHHHCCCHHH
Confidence 4443 35567888888764322 2222455666666665432 2455667777777554
No 409
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.70 E-value=2e+02 Score=20.11 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 122 ALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 122 ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
|-.+-..|+.++..|+.|+..|..
T Consensus 48 L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 48 LTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666655553
No 410
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=21.69 E-value=95 Score=23.22 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhccCccchHHHHhhccC---CCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHH
Q 027291 12 KRGKILEIFYESQDFYLLKELEKLGPK---KGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRN 83 (225)
Q Consensus 12 Kr~ril~~f~e~~~~ytlKELEK~~pK---kGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~ 83 (225)
.|..|.+++....-..--||. -+|+ -.|.--.|.-.+|||.+-|.|.. .--=.-|||.+.++...-++.
T Consensus 7 ~r~~IYe~LFkEGV~vakKD~--~~~kH~el~vpNL~Vik~mqSLkSrGyVke-qFaWrh~Yw~LTnEGieyLR~ 78 (105)
T 3u5c_K 7 DRNKIHQYLFQEGVVVAKKDF--NQAKHEEIDTKNLYVIKALQSLTSKGYVKT-QFSWQYYYYTLTEEGVEYLRE 78 (105)
T ss_dssp HHHHHHHHHHHHSEEECCSCS--CCSSCSSSSSCHHHHHHHHHHHHHTSSEEE-ECTTTCCEEEECHHHHHHHHH
T ss_pred hHHHHHHHHhhCCcEEEEcCC--CCCCCCccCccchhHHHHHhcccccceecc-EecceEEEEEEchhhHHHHHH
Confidence 567788877765544444554 2454 34667789999999999999864 444557899999887666544
No 411
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.68 E-value=2.2e+02 Score=20.19 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=51.1
Q ss_pred cchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 27 YLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQSSKKRHTELVEQC 106 (225)
Q Consensus 27 ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~~~~~~~~l~~~i~~~~~~i~~l~~~i 106 (225)
|++.|+-++ .||++.++.-+- ..|++...+.+.++ |+.|+......+.. +..+. .+--.+.++..-+
T Consensus 3 ~~i~e~A~~---~gvs~~tLR~ye----~~Gll~p~~~~~~g-~R~Y~~~dl~~l~~-I~~l~----~~G~~l~~I~~~l 69 (109)
T 1r8d_A 3 YQVKQVAEI---SGVSIRTLHHYD----NIELLNPSALTDAG-YRLYSDADLERLQQ-ILFFK----EIGFRLDEIKEML 69 (109)
T ss_dssp BCHHHHHHH---HSCCHHHHHHHH----HTTSSCCSEECTTC-CEEBCHHHHHHHHH-HHHHH----HTTCCHHHHHHHH
T ss_pred ccHHHHHHH---HCcCHHHHHHHH----HCCCCCCCeECCCC-CeeeCHHHHHHHHH-HHHHH----HCCCCHHHHHHHH
Confidence 666665444 499998888764 46999877654433 56676655443322 11221 1111122322222
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 107 NALKKGREESDEREEALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 107 e~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~ 143 (225)
. .. ..+-+..+-+++..|..+++.|+..+..+
T Consensus 70 ~----~~-~~~~~~~l~~~~~~l~~~i~~l~~~~~~l 101 (109)
T 1r8d_A 70 D----HP-NFDRKAALQSQKEILMKKKQRMDEMIQTI 101 (109)
T ss_dssp H----CT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h----CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 11 12234455556666666666666655444
No 412
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.65 E-value=2.3e+02 Score=20.39 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQC 106 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~i 106 (225)
+.+++..|+++...++..+.+++...
T Consensus 10 ~~~~~~~Lq~~~~~LE~~l~e~E~~~ 35 (95)
T 3mov_A 10 RENLYFQGQKESRACLERIQELEDLL 35 (95)
T ss_dssp --------CCCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554443
No 413
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.65 E-value=36 Score=26.10 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhh
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGN 79 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~ 79 (225)
-..++.|.+||+-- ..+...+|...-||.||.... -|+.+++|+-|||++.-
T Consensus 8 ~~~~~~r~~Il~aA------------~~lf~~~G~~~~s~~~IA~~a---------Gvsk~tlY~hF~sKe~L 59 (200)
T 2hyj_A 8 AEAQATRGRILGRA------------AEIASEEGLDGITIGRLAEEL---------EMSKSGVHKHFGTKETL 59 (200)
T ss_dssp CTHHHHHHHHHHHH------------HHHHHHHCGGGCCHHHHHHHH---------TCCHHHHHTTCSSHHHH
T ss_pred chhhccHHHHHHHH------------HHHHHHcCcccCCHHHHHHHh---------CCChHHHHHHcCCHHHH
Confidence 45677888886532 222333588888888887654 36778899999997653
No 414
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=21.61 E-value=67 Score=24.39 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=44.3
Q ss_pred HHHHHHhhc--cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhh
Q 027291 15 KILEIFYES--QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAG 78 (225)
Q Consensus 15 ril~~f~e~--~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~ 78 (225)
++|-++... ....+.+|| |-.-||++..|..+++.|..-|+|.+-+=-.+-|+-+=|....
T Consensus 15 ~~L~~La~~~~~~~~s~~~I---A~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~I 77 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSI---AEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEI 77 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHH---HHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGGGC
T ss_pred HHHHHHHhCCCCCCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcccC
Confidence 456666543 346777775 4447999999999999999999999865445667766665443
No 415
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=21.57 E-value=1e+02 Score=24.32 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 7 LSLEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
-..+++|.+||+-. ..+...+|+...||.||-+.. -|+.+.+|+-|+|+..--
T Consensus 42 ~~~~~~r~~Il~aA------------~~lf~~~G~~~~t~~~IA~~a---------Gvs~~t~Y~~F~sKe~Ll 94 (245)
T 3aqt_A 42 QKREQTRARLITSA------------RTLMAERGVDNVGIAEITEGA---------NIGTGTFYNYFPDREQLL 94 (245)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHHCGGGCCHHHHHHHT---------TSCGGGGGGTCSSHHHHH
T ss_pred HHHHHHHHHHHHHH------------HHHHHhcCcccCcHHHHHHHh---------CCChHHHHHHcCCHHHHH
Confidence 33566777776543 333444688888999887765 478889999999976443
No 416
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=21.56 E-value=2.6e+02 Score=25.30 Aligned_cols=22 Identities=9% Similarity=0.297 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027291 122 ALEELKAVELKHIELKDEMGQY 143 (225)
Q Consensus 122 ll~~l~~L~~~~~~l~~el~~~ 143 (225)
...+++.|-++++.|..++...
T Consensus 101 ~V~~iN~l~~qIa~LN~qI~~~ 122 (463)
T 2d4y_A 101 SVAQINNYAKQIANLNDQISRM 122 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444433
No 417
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=21.47 E-value=1.5e+02 Score=23.80 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHhhccC----------ccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 7 LSLEEKRGKILEIFYESQD----------FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~----------~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.|+.++....|-.+..... .+|.++| |.-.|++..+|=-++..|.++|+|..++
T Consensus 188 ~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~l---A~~lG~sr~tvsR~l~~L~~~GlI~~~~ 251 (260)
T 3kcc_A 188 LLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEI---GQIVGCSRETVGRILKMLEDQNLISAHG 251 (260)
T ss_dssp CCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHH---HHHhCCCHHHHHHHHHHHHHCCCEEEcC
Confidence 3556555555544443321 2344443 4446999999999999999999998764
No 418
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=21.42 E-value=4e+02 Score=23.99 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHhhhhhH
Q 027291 121 EALEELKAVELKHIELKDEMGQYA--DNDPAAFEAMKNAIEVAHAAANRWTDNI 172 (225)
Q Consensus 121 ~ll~~l~~L~~~~~~l~~el~~~~--~~Dp~~i~~~k~~~~~~k~aanrwTDNI 172 (225)
.++..+.++......+..-.+-+. +.||+..+....++..+...+..+...+
T Consensus 57 ~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l 110 (371)
T 1zbt_A 57 ETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKL 110 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444333333 3488877777777777766665555433
No 419
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=21.31 E-value=5.2e+02 Score=24.34 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHHHH
Q 027291 99 HTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD-----NDPAAFEAMKNAIEVAH 162 (225)
Q Consensus 99 i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~-----~Dp~~i~~~k~~~~~~k 162 (225)
.+++.+.++++-..+-+...|..++.+++.|+...+.....++.+.+ +++...+.++.....+.
T Consensus 46 w~~~~~~ve~LIdqkI~~~~~~~a~~~l~gL~~~~~~Y~~al~~w~~np~~~~~~~~~~~vr~~f~~l~ 114 (584)
T 1dlc_A 46 WKAFMEQVEALMDQKIADYAKNKALAELQGLQNNVEDYVSALSSWQKNPVSSRNPHSQGRIRELFSQAE 114 (584)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCChHHHHHHHHHHHHHH
Confidence 33444555555556667778888999999898888888888888776 34444455554444433
No 420
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.24 E-value=1.2e+02 Score=21.95 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027291 91 DLQSSKKRHTELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD 145 (225)
Q Consensus 91 ~i~~~~~~i~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~ 145 (225)
+++.++..+..++..+..++. +-...+.+++.|-.-.-.|..|+..|..
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~------e~~~ql~EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRD------QMQQQLNDYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555443 3344456666666666667777766653
No 421
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.12 E-value=4.7e+02 Score=23.74 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027291 122 ALEELKAVEL 131 (225)
Q Consensus 122 ll~~l~~L~~ 131 (225)
++.++..|+.
T Consensus 89 ml~~~~~~e~ 98 (409)
T 1m1j_C 89 IIEEIIRYEN 98 (409)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 422
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.02 E-value=3.1e+02 Score=21.65 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 76 CAGNQLRNVYRKLESDLQSSKKR-HTELVEQCNALKKGREESDERE-EALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 76 ~~~~~~~~~~~~l~~~i~~~~~~-i~~l~~~ie~~k~~r~~~~eR~-~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
............+..+++++... ..+...-+..++..|...+.|. .+-.++.+-...+..++.+|..++..
T Consensus 72 ~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 72 ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 423
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.99 E-value=2.1e+02 Score=19.77 Aligned_cols=32 Identities=6% Similarity=0.045 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKKG 112 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~~ 112 (225)
...++..+..+...++.++..++..++..+..
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~ 36 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44567777778888888888888888877653
No 424
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=20.80 E-value=1.5e+02 Score=23.47 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhhcc-----------CccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 7 LSLEEKRGKILEIFYESQ-----------DFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~-----------~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.|++++....|-.+.... -..|.++| |.--|++..+|--++..|.++|+|...+
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~i---A~~lG~sr~tvsR~l~~L~~~g~I~~~~ 211 (250)
T 3e6c_C 147 YNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSI---GEITGVHHVTVSRVLASLKRENILDKKK 211 (250)
T ss_dssp SCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHH---HHHhCCcHHHHHHHHHHHHHCCCeEeCC
Confidence 566766666665554431 23466665 4446999999999999999999998875
No 425
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=20.79 E-value=70 Score=24.40 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHhhccC----------ccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 7 LSLEEKRGKILEIFYESQD----------FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~----------~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.|.+++....|-.+..... .+|.+| +|.-.|++..+|--++..|.++|+|..++
T Consensus 110 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~---lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 110 GELRARIARYLLFLADTPLSARDRQGIYVTVSHEE---IADATASIRESVSKVLADLRREGLIATAY 173 (195)
T ss_dssp SCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHH---HHHTTTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHH---HHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 5666666655555443211 234443 45557999999999999999999998764
No 426
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=20.77 E-value=5.4e+02 Score=24.30 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHHH
Q 027291 100 TELVEQCNALKKGREESDEREEALEELKAVELKHIELKDEMGQYAD-----NDPAAFEAMKNAIEVA 161 (225)
Q Consensus 100 ~~l~~~ie~~k~~r~~~~eR~~ll~~l~~L~~~~~~l~~el~~~~~-----~Dp~~i~~~k~~~~~~ 161 (225)
+++.+.++++-..+-+...|..++.+++.|+...+.....++.+.+ ++|...+.++.....+
T Consensus 45 ~~~~~~ve~LIdqkI~~~~~~~a~~~l~gL~~~~~~Y~~al~~w~~np~~~~~~~~~~~v~~~f~~~ 111 (589)
T 1ji6_A 45 KAFMAQVEVLIDKKIEEYAKSKALAELQGLQNNFEDYVNALNSWKKTPLSLRSKRSQDRIRELFSQA 111 (589)
T ss_dssp HHHHHHTHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCChhHHHHHHHHHHHH
Confidence 3444455555556667778889999999999999888888888876 4454445555444443
No 427
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.70 E-value=2.5e+02 Score=26.74 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 027291 93 QSSKKRHTELVEQCNALKKGR 113 (225)
Q Consensus 93 ~~~~~~i~~l~~~ie~~k~~r 113 (225)
..+...|.+|+.+++.....+
T Consensus 60 rDltkrINELKnqLEdlsKns 80 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNN 80 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhc
Confidence 444455555555555554433
No 428
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=20.69 E-value=62 Score=23.22 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=32.5
Q ss_pred hHHHHhhccCCCcchhcHHHHHHHhhhcCccccccc-cceeeE-Ecccc
Q 027291 29 LKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKI-GTSVYF-WSLPS 75 (225)
Q Consensus 29 lKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKi-GssN~Y-WsFps 75 (225)
+|||.|+-+. +...|+..|..|.++-.....+. |..+.| |.+..
T Consensus 12 ~K~l~kLd~~---~~~ri~~~l~~l~~nP~~~~k~L~g~~~~y~~RlRv 57 (95)
T 4fxi_A 12 LKEWRKLGST---VREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRS 57 (95)
T ss_dssp HHHHHHSCHH---HHHHHHHHHHHHHHSCCCGGGBCSSSTTEEEEECTT
T ss_pred HHHHHhCCHH---HHHHHHHHHHHHhhCCCCcCccCcCCCCCCeEEEEe
Confidence 5788887655 45678888899999887777664 776664 88764
No 429
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=20.64 E-value=98 Score=24.10 Aligned_cols=60 Identities=8% Similarity=0.038 Sum_probs=42.6
Q ss_pred HHHHHHhhc-cCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchh
Q 027291 15 KILEIFYES-QDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCA 77 (225)
Q Consensus 15 ril~~f~e~-~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~ 77 (225)
++|-++... ..+.+.++| |..-||++..|.-+++.|...|+|.+-+=-.+-|.-+=|...
T Consensus 16 r~l~~La~~~~~~~s~~~I---A~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~ 76 (162)
T 3k69_A 16 HSILYLDAHRDSKVASREL---AQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLALAD 76 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHH---HHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCGGG
T ss_pred HHHHHHHhCCCCCcCHHHH---HHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEecCChhh
Confidence 566666553 456777665 445799999999999999999999775433345665655543
No 430
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=20.64 E-value=3e+02 Score=21.23 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhccCCCcchhcHHHHHHHhhhcCccccccccceeeEEcccchhhhh
Q 027291 9 LEEKRGKILEIFYESQDFYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDKIGTSVYFWSLPSCAGNQ 80 (225)
Q Consensus 9 ~eEKr~ril~~f~e~~~~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EKiGssN~YWsFps~~~~~ 80 (225)
.++.|.+||+-.. .+....|+...||.+|-+.. -|+.+.+|+-|+|+..--
T Consensus 42 ~~~~r~~Il~aA~------------~lf~e~G~~~~t~~~IA~~a---------Gvs~~tlY~~F~sK~~L~ 92 (236)
T 3q0w_A 42 GDDRELAILATAE------------NLLEDRPLADISVDDLAKGA---------GISRPTFYFYFPSKEAVL 92 (236)
T ss_dssp CHHHHHHHHHHHH------------HHHHHSCGGGCCHHHHHHHH---------TCCHHHHHHHCSSHHHHH
T ss_pred hHHHHHHHHHHHH------------HHHHHcCcccCCHHHHHHHh---------CCcHHHHHHHCCCHHHHH
Confidence 4677778866433 34444688888998887765 367788999999976543
No 431
>1kpt_A KP4 toxin; killer toxin, virally encoded, single subunit, alpha/beta family, LEFT-handed crossover, fungal TOXI; 1.75A {Ustilago maydis} SCOP: d.70.1.1
Probab=20.56 E-value=37 Score=25.45 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=24.5
Q ss_pred CcchhcHHHHHHHhhhcCccccccccceeeE
Q 027291 40 GVITQSVKDVVQSLVDDDLVLKDKIGTSVYF 70 (225)
Q Consensus 40 GI~~~~VKdvlQ~LVDDglV~~EKiGssN~Y 70 (225)
+++...+++.+|.|+|-| +.+|||.-||
T Consensus 60 ~~~g~~~~~~~~~L~~hG---Ck~CGSvp~~ 87 (105)
T 1kpt_A 60 CISGTEACRHLTNLVNHG---CRVCGSDPLY 87 (105)
T ss_dssp CEEHHHHHHHHHHHHHHT---CSSCEEEESS
T ss_pred CcCHHHHHHHHHHHHhcC---ccccCCcccc
Confidence 347889999999999988 7889998887
No 432
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=20.36 E-value=2.1e+02 Score=20.47 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=4.7
Q ss_pred cHHHHHHHhhh
Q 027291 45 SVKDVVQSLVD 55 (225)
Q Consensus 45 ~VKdvlQ~LVD 55 (225)
.||.-+|+|-.
T Consensus 6 ~iKkKm~~lk~ 16 (101)
T 3u59_A 6 AIKKKMQMLKL 16 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 433
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.19 E-value=2.5e+02 Score=20.13 Aligned_cols=61 Identities=8% Similarity=0.133 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC-c---HHH-HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027291 86 RKLESDLQSSKKRHTELVEQCNALKKG-REE-S---DER-EEALEELKAVELKHIELKDEMGQYADN 146 (225)
Q Consensus 86 ~~l~~~i~~~~~~i~~l~~~ie~~k~~-r~~-~---~eR-~~ll~~l~~L~~~~~~l~~el~~~~~~ 146 (225)
..|+.+++.++.++..|...|..+... +.. . -.| -.+|.++++++.--..|---++....+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv 70 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKC 70 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 356677777777777777777776653 322 1 123 377888888877777666666655544
No 434
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=20.16 E-value=5.4e+02 Score=24.13 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027291 81 LRNVYRKLESDLQSSKKRHTELVEQCNALKK 111 (225)
Q Consensus 81 ~~~~~~~l~~~i~~~~~~i~~l~~~ie~~k~ 111 (225)
-+.++...++++++.++.-+++++.-+...+
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~a 37 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVA 37 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777766666666655554433
No 435
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=20.08 E-value=1.7e+02 Score=22.23 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhhccC----------ccchHHHHhhccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 7 LSLEEKRGKILEIFYESQD----------FYLLKELEKLGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 7 lS~eEKr~ril~~f~e~~~----------~ytlKELEK~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
.|++++....|-.+..... ..|.++ +|.--|++..+|--++..|.++|+|..++
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~---lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 180 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDE---LAAAVGSVRETVTKVIGELAREGYIRSGY 180 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHH---HHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHH---HHHHhCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 4566655555554433211 134444 34446999999999999999999998764
No 436
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.08 E-value=2.4e+02 Score=20.03 Aligned_cols=28 Identities=7% Similarity=0.092 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027291 80 QLRNVYRKLESDLQSSKKRHTELVEQCN 107 (225)
Q Consensus 80 ~~~~~~~~l~~~i~~~~~~i~~l~~~ie 107 (225)
.+.+++..++.++..+...+..++..+.
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~ 37 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELT 37 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 437
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=20.00 E-value=1.4e+02 Score=23.01 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=25.1
Q ss_pred hccCCCcchhcHHHHHHHhhhcCcccccc
Q 027291 35 LGPKKGVITQSVKDVVQSLVDDDLVLKDK 63 (225)
Q Consensus 35 ~~pKkGI~~~~VKdvlQ~LVDDglV~~EK 63 (225)
+|.--|++..+|--++..|.++|+|..++
T Consensus 184 lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 212 (227)
T 3dkw_A 184 VAGHLSIQPETFSRIMHRLGDEGIIHLDG 212 (227)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTSEEESS
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCcEEecC
Confidence 34447999999999999999999998865
Done!