BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027292
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 253 bits (646), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 115/172 (66%), Positives = 147/172 (85%)
Query: 10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQ 69
P DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ + K++KAQ
Sbjct: 13 PRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 72
Query: 70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIG 129
IWDTAGQERYRA+TSAYYRGAVGA+LVYDI++ +++++ RWL+ELR HAD NIVI+L+G
Sbjct: 73 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 132
Query: 130 NKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI 181
NKSDL RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+ I
Sbjct: 133 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 251 bits (642), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 115/176 (65%), Positives = 149/176 (84%)
Query: 4 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH 63
G G + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +
Sbjct: 16 GRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75
Query: 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI 123
K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++ +++++ RWL+ELR HAD NI
Sbjct: 76 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
VI+L+GNKSDL RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 250 bits (638), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 116/185 (62%), Positives = 152/185 (82%), Gaps = 2/185 (1%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ + K++KAQIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQERYR +TSAYYRGAVGA+LVYDI++ +++++ RWL+ELR HAD NIVI+L+GNKSDL
Sbjct: 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLT--AGEG 192
RAVPT++A+ FA+K L F+ETSAL++TNVE AF +LTEI+ IV++K + A
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182
Query: 193 QGNGN 197
+ GN
Sbjct: 183 ESPGN 187
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 249 bits (636), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 148/176 (84%)
Query: 4 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH 63
G G + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +
Sbjct: 16 GRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75
Query: 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI 123
K++KAQIWDTAG ERYRA+TSAYYRGAVGA+LVYDI++ +++++ RWL+ELR HAD NI
Sbjct: 76 KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
VI+L+GNKSDL RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 248 bits (634), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 113/167 (67%), Positives = 145/167 (86%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ + K++KAQIWDTA
Sbjct: 6 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 65
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
G ERYRA+TSAYYRGAVGA+LVYDI++ +++++ RWL+ELR HAD NIVI+L+GNKSDL
Sbjct: 66 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 125
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI 181
RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+ I
Sbjct: 126 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 248 bits (632), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 113/172 (65%), Positives = 146/172 (84%)
Query: 8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
G + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ + K++K
Sbjct: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
Query: 68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
AQIWDTAG ERYRA+TSAYYRGAVGA+LVYDI++ +++++ RWL+ELR HAD NIVI L
Sbjct: 62 AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXL 121
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
+GNKSDL RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 246 bits (627), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 143/165 (86%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ + K++KAQIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
G ERYRA+TSAYYRGAVGA+LVYDI++ +++++ RWL+ELR HAD NIVI L+GNKSDL
Sbjct: 63 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
RAVPT++A+ FA+K GL F+ETSAL++TNVE AF T+LTEI+
Sbjct: 123 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 244 bits (624), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 119/213 (55%), Positives = 152/213 (71%), Gaps = 4/213 (1%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
D +FK+VLIGDS VGKS +L+RF +NEF++DSK+TIGVEF TRTL I+ K +KAQIWDTA
Sbjct: 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTA 70
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQERYRA+TSAYYRGAVGA++VYDIS+ S+++ WL ELR +AD N+ + LIGNKSDL
Sbjct: 71 GQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQG 194
RAVPTE++K FAQ+ L F ETSAL + NV+ AF ++ I+ V+K + G+
Sbjct: 131 AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSA 190
Query: 195 NGNPASLS---GKKI-LVPGPAQEIPAKSSMCC 223
NGN S G I L P P + A + CC
Sbjct: 191 NGNANGASAPNGPTISLTPTPNENKKANGNNCC 223
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 238 bits (606), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 111/175 (63%), Positives = 147/175 (84%), Gaps = 1/175 (0%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDT 73
DY+FK+VLIGDS VGKS +L+RF R+EF+L+SK+TIGVEF T+++ +++ K +KAQIWDT
Sbjct: 5 DYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDT 64
Query: 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
AGQERYRA+TSAYYRGAVGA+LVYDI+++ SF++I +WL+ELR +AD NIVI+L+GNKSD
Sbjct: 65 AGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSD 124
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLT 188
L+ R + DA ++A+KE L F+ETSALEATNVE AF +L EI+N+ KK T
Sbjct: 125 LKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQAT 179
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 233 bits (595), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 109/178 (61%), Positives = 143/178 (80%)
Query: 8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
G + ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++ +VK
Sbjct: 1 GSHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 60
Query: 68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
AQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++ + RWL+EL HA+ IV++L
Sbjct: 61 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 120
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
+GNKSDL + R VPTE+A+ FA+ GL FLETSAL++TNVE AF TVL EIF V+K+
Sbjct: 121 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 232 bits (592), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/175 (61%), Positives = 143/175 (81%)
Query: 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
++ ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++ +VKAQI
Sbjct: 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
Query: 71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
WDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++ + RWL+EL HA+ IV++L+GN
Sbjct: 79 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
KSDL + R VPTE+A+ FA+ GL FLETSAL++TNVE AF TVL EIF V+K+
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 220 bits (561), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 135/170 (79%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
DY+FK+VLIGDS VGKS +L+RF +EF+++SK+TIGVEF TRT+ +++K +KAQIWDTA
Sbjct: 8 DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
G ERYRA+TSAYYRGAVGA++VYDIS+ S+++ WL ELR +AD N+ + LIGNKSDL
Sbjct: 68 GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
RAVPT++AK FA + + F ETSAL + NV+ AF ++ IF +V+K
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 189 bits (481), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 118/164 (71%)
Query: 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
Y+FK ++IGD+ VGKS +L +F F TIGVEF R + I K +K QIWDTAG
Sbjct: 9 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
QE +R++T +YYRGA GA+LVYDI+RR +F+H+ WLE+ R H++ N+VI+LIGNKSDLE
Sbjct: 69 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
+R V E+ + FA++ GL F+ETSA A+NVE AF+ EI+
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 118/164 (71%)
Query: 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
Y+FK ++IGD VGKS +L +F +F D TIGVEF TR + + + +K QIWDTAG
Sbjct: 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
QER+RAVT +YYRGA GA++VYDI+RR +++H+ WL + R+ + N VIILIGNK+DLE
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
QR V E+AK+FA++ GL FLE SA NVE+AF+ +I+
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 119/169 (70%)
Query: 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
Y+FK ++IGD+ VGKS +L +F F TIGVEF R + I K +K QIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
QE +R++T +YYRGA GA+LVYDI+RR++F+H+ WLE+ R H+ N+VI+LIGNKSDLE
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
+R V E+ + FA++ GL F+ETSA A NVE AF+ EI+ + +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 117/164 (71%)
Query: 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
Y+FK ++IGD VGKS +L +F +F D TIGVEF TR + + + +K QIWDTAG
Sbjct: 29 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
Q R+RAVT +YYRGA GA++VYDI+RR +++H+ WL + R+ + N VIILIGNK+DLE
Sbjct: 89 QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
QR V E+AK+FA++ GL FLE SA NVE+AF+ +I+
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 145/202 (71%), Gaps = 3/202 (1%)
Query: 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
N + DY+FK++LIG+S VGKS +L RF+ + ++ D +TIGV+F+ +T+ + K+VK QI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
WDTAGQER+R +TS+YYRG+ G ++VYD++ ++SF+ + WL+E+ +A ++ +L+GN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL--T 188
K DL+++R V + AKEFA + FLETSAL++TNVE+AF+T+ +I ++++NL T
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 189 AGEGQGNGNPASLSGKKILVPG 210
+ + GN +L G+ + G
Sbjct: 182 TQKKEDKGN-VNLKGQSLTNTG 202
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 145/202 (71%), Gaps = 3/202 (1%)
Query: 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
N + DY+FK++LIG+S VGKS +L RF+ + ++ D +TIGV+F+ +T+ + K+VK QI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
WDTAGQER+R +TS+YYRG+ G ++VYD++ ++SF+ + WL+E+ +A ++ +L+GN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL--T 188
K DL+++R V + AKEFA + FLETSAL++TNVE+AF+T+ +I ++++NL T
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 189 AGEGQGNGNPASLSGKKILVPG 210
+ + GN +L G+ + G
Sbjct: 182 TQKKEDKGN-VNLKGQSLTNTG 202
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 126/174 (72%)
Query: 5 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK 64
G N + DY+FK++LIGDS VGKS +L RFA + ++ +TIGV+F+ RT+ + K
Sbjct: 4 GSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63
Query: 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV 124
++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+ +A +N+
Sbjct: 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123
Query: 125 IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+L+GNK DL ++ V AKEFA G+ FLETSA ATNVE +FMT+ EI
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 126/174 (72%), Gaps = 1/174 (0%)
Query: 6 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS 65
G GDP+++ D++FK+VL+GD++VGK+ ++ RF FS +TIGV+F +TL IQ K
Sbjct: 18 GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77
Query: 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVI 125
VK QIWDTAGQER+R +T +YYR A GA+L YDI++R SF +P W+E++R +A NIV
Sbjct: 78 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137
Query: 126 ILIGNKSDLEEQRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMTVLTEI 178
+LIGNKSDL E R V +A+ A+ + L +ETSA +++NVE AF+ V TE+
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 126/174 (72%)
Query: 5 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK 64
G N + DY+FK++LIGDS VGK+ +L RFA + ++ +TIGV+F+ RT+ + K
Sbjct: 4 GSMSSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63
Query: 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV 124
++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+ +A +N+
Sbjct: 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123
Query: 125 IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+L+GNK DL ++ V AKEFA G+ FLETSA ATNVE +FMT+ EI
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 182 bits (461), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 123/164 (75%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
DY+FK++LIGDS VGKS +L RFA + ++ +TIGV+F+ RT+ + K++K QIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R +TS+YYRGA G ++VYD++ ++S+ ++ +WL+E+ +A +N+ +L+GNKSDL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
++ V AKEFA G+ FLETSA ATNVE AFMT+ EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 126/171 (73%), Gaps = 2/171 (1%)
Query: 8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
G P + DY+FK++LIGDS VGKS +L RFA + ++ +TIGV+F+ RT+ + K++K
Sbjct: 18 GSP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 75
Query: 68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+ +A +N+ +L
Sbjct: 76 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 135
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+GNK DL ++ V AKEFA G+ FLETSA ATNVE +FMT+ EI
Sbjct: 136 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 123/164 (75%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
DY+FK++LIGDS VGKS +L RFA + ++ +TIGV+F+ RT+ + K++K QIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R +TS+YYRGA G ++VYD++ ++S+ ++ +WL+E+ +A +N+ +L+GNKSDL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
++ V AKEFA G+ FLETSA ATNVE AFMT+ EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 125/168 (74%)
Query: 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
N + DY+FK++LIGDS VGKS +L RFA + ++ +TIGV+F+ RT+ +++K+VK QI
Sbjct: 3 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
Query: 71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
WDTAGQER+R +TS+YYRGA G ++VYD++ R SFD++ +W++E+ +A +N+ +L+GN
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
K DL +R V +++ +E A G+ F+ETSA A NVE AF T+ EI
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 123/164 (75%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
DY+FK++LIGDS VGKS +L RFA + ++ +TIGV+F+ RT+ + K++K QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+ +A +N+ +L+GNK DL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
++ V AKEFA G+ FLETSA ATNVE +FMT+ EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 124/168 (73%)
Query: 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
N + DY+FK++LIGDS VGKS +L RFA + ++ +TIGV+F+ RT+ + K++K QI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
WDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+ +A +N+ +L+G
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
K DL ++ V AKEFA G+ FLETSA ATNVE +FMT+ EI
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 123/168 (73%)
Query: 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
N + DY+FK++LIGDS VGKS +L RFA + ++ +TIGV+F+ RT+ + K++K QI
Sbjct: 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
WDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+ +A +N+ +L+GN
Sbjct: 87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
K DL ++ V AKEFA G+ FLETSA ATNVE +F T EI
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 118/173 (68%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
D++FK ++IG + GKS +L +F N+F DS TIGVEF +R + + K+VK QIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R+VT +YYRGA GA+LVYDI+ R++++ + WL + R+ A NIV+IL GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
+ +R V +A FAQ+ L FLETSAL NVE AF+ I N ++ L
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGEL 195
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 126/164 (76%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
DY+FK++LIG+S VGKS +L RF+ + ++ D +TIGV+F+ +T+ + K+VK QIWDTA
Sbjct: 19 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 78
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R +TS+YYRG+ G ++VYD++ ++SF+ + WL+E+ +A ++ +L+GNK DL
Sbjct: 79 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 138
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+++R V + AKEFA + FLETSAL++TNVE+AF+T+ +I
Sbjct: 139 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 122/164 (74%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
D +FK++LIGDS VGKS +L RFA + ++ +TIGV+F+ RT+ + K++K QIWDTA
Sbjct: 4 DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+ +A +N+ +L+GNK DL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
++ V AKEFA G+ FLETSA ATNVE +FMT+ EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/180 (47%), Positives = 119/180 (66%)
Query: 8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
G ++ D++FK ++IG++ GKS +L +F +F DS TIGVEF ++ + + K VK
Sbjct: 1 GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 60
Query: 68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
QIWDTAGQER+R+VT +YYRGA GA+LVYDI+ R++++ + WL + R A +NIVIIL
Sbjct: 61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
GNK DL+ R V +A FAQ+ L FLETSAL NVE AF+ +I N + L
Sbjct: 121 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 119/160 (74%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K++LIGDS VGKS +L RFA + ++ +TIGV+F+ RT+ + K++K QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138
+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+ +A +N+ +L+GNK DL ++
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
V AKEFA G+ FLETSA ATNVE +FMT+ EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 121/172 (70%)
Query: 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDT 73
+DY+FK++LIGDS VGK+ +L RF+ + F+ +TIG++F+ RT+ + K +K QIWDT
Sbjct: 3 MDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62
Query: 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
AGQER+R +T+AYYRGA+G MLVYDI+ +SFD+I W+ + HA ++ +++GNK D
Sbjct: 63 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKK 185
+ ++R V E ++ A G+ F+ETSA NVENAF T+ +I ++KK
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 116/164 (70%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
DY+FK++LIGDS VGK+ +L RF+ + F+ +TIG++F+ RT+ + K +K QIWDTA
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R +T+AYYRGA+G MLVYDI+ +SFD+I W+ + HA ++ +++GNK D+
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
++R V E ++ A G+ F+ETSA NVENAF T+ +I
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 116/170 (68%)
Query: 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
++ D++FK ++IG++ GKS +L +F +F DS TIGVEF ++ + + K VK QI
Sbjct: 5 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 64
Query: 71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
WDTAGQER+R+VT +YYRGA GA+LVYDI+ R++++ + WL + R A +NIVIIL GN
Sbjct: 65 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 124
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
K DL+ R V +A FAQ+ L FLETSAL +VE AF+ +I N
Sbjct: 125 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 115/170 (67%)
Query: 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
++ D++FK ++IG++ GKS +L +F +F DS TIGVEF ++ + + K VK QI
Sbjct: 2 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 61
Query: 71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
WDTAG ER+R+VT +YYRGA GA+LVYDI+ R++++ + WL + R A +NIVIIL GN
Sbjct: 62 WDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 121
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180
K DL+ R V +A FAQ+ L FLETSAL +VE AF+ +I N
Sbjct: 122 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 166 bits (420), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
D++FK+++IGDS VGKS +L RFA N FS TIGV+F+ RT+ I + VK QIWDTA
Sbjct: 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R +TS YYRG G ++VYD++ +SF ++ RWL E+ + D ++ IL+GNK+D
Sbjct: 67 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDD 125
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
E++ V TEDA +FA + G+ ETSA E NVE F +TE+ K NL
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF-NCITELVLRAKKDNL 177
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 116/170 (68%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
DY+FK++LIG+S+VGK+ L R+A + F+ +T+G++F+ +T+ K +K QIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQERYR +T+AYYRGA+G +L+YDI+ ++SF + W ++++++ N +IL+GNK DL
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184
E++R VP ED + A G F E SA E NV+ F ++ I +N+
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 112/158 (70%)
Query: 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDT 73
DY+FK+++IG+S+VGK+ L R+A + F+ +T+G++F+ +T+ K VK QIWDT
Sbjct: 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
AGQERYR +T+AYYRGA+G +L+YDI+ +SF+ + W ++++++ N +IL+GNK D
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
+EE+R VPTE + A++ G F E SA E +V AF
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 110/158 (69%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
D++FK+VLIG++ VGK+ ++ RF + F ATIGV+F +T+ I + VK QIWDTA
Sbjct: 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R++T +YYR A +L YDI+ +SF +P WL E+ +A ++ +L+GNK DL
Sbjct: 84 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
E+R V + A+EF++ + +++LETSA E+ NVE F+
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 109/156 (69%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+VL+GD GKS ++ RF +++F ++TIG F ++TL + +VK +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138
Y ++ YYRGA A++V+D++ + SF+ +W++EL++ + N+V+ L GNKSDL + R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
V EDA+ +AQ+ GLFF+ETSA ATNV+ F +
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 117/182 (64%), Gaps = 4/182 (2%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
D + K++LIGDS VGKS +L RF ++F+ TIG++F+ +T+ I K VK Q+WDTA
Sbjct: 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R +T+AYYRGA+G +LVYD++ ++F +I +W + + HA+ ++L+GNKSD+
Sbjct: 78 GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQG 194
E R V + + A++ G+ F+E+SA NV F T+ I ++ L G G
Sbjct: 138 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLV---GVG 193
Query: 195 NG 196
NG
Sbjct: 194 NG 195
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 110/158 (69%)
Query: 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDT 73
DY+FK+++IG+S+VGK+ L R+A + F+ +T+G++F+ +T+ K +K QIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
AGQERYR +T+AYYRGA+G +L+YDI+ +SF+ + W ++++++ N ++L+GNK D
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
+E++R V +E ++ A G F E SA + NV+ F
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 105/157 (66%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+SAVGKS ++ RF + +F ++TIG F T+T+ + +VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +SF W++EL+ A NIVI L GNK+DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F+ETSA + NV FM +
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 164
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 105/157 (66%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+SAVGKS ++ RF + +F ++TIG F T+T+ + +VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +SF W++EL+ A NIVI L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F+ETSA + NV FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
D + K++LIGDS VGKS +L RF ++F+ TIG++F+ +T+ I K VK QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R +T+AYYRGA+G +LVYDI+ ++F +I +W + + HA+ ++L+GNKSD+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
E R V + + A++ G+ F+E+SA NV F T+
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 104/157 (66%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+SAVGKS ++ RF + +F ++TIG F T+T+ + +VK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +F W++EL+ A NIVI L GNK+DL +
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F+ETSA A NV FM +
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+S VGKS ++ RF + +F ++TIG F T+T+ + +VK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +SF W++EL+ A NIVI L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F+ETSA + NV FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+S VGKS ++ RF + +F ++TIG F T+T+ + +VK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +SF W++EL+ A NIVI L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F+ETSA + NV FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+S VGKS ++ RF + +F ++TIG F T+T+ + +VK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +SF W++EL+ A NIVI L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F+ETSA + NV FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+S VGKS ++ RF + +F ++TIG F T+T+ + +VK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +SF W++EL+ A NIVI L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F+ETSA + NV FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 105/161 (65%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
KV L+GD+ VGKS I+ RF ++ F + TIG F T+T+ ++ K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
R+ ++ YYRG+ A++VYDI+++ SF + +W++EL+ H +NIV+ + GNK DL +
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R VP +DAKE+A+ G +ETSA A N+E F + +I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+S VGKS ++ RF + +F ++TIG F T+T+ + +VK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +SF W++EL+ A NIVI L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F+ETSA + NV FM +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+SAVGKS ++ RF + +F ++TIG F T+T+ + +VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +SF W++EL+ A NIVI L GNK+DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F+ETSA + NV FM +
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+ K++LIGDS VGKS +L RF ++F+ TIG++F+ +T+ I K VK Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136
ER+R +T+AYYRGA+G +LVYD++ ++F +I +W + + HA+ ++L+GNKSD+ E
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
R V + + A++ G+ F+E+SA NV F T+
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 106/157 (67%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+SAVGKS ++ RF + +F ++TIG F T+++ + +VK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +++F W++EL+ A +IVI L GNK+DL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
R V E+A+ +A L F+ETSA A NV + F+ +
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAI 165
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
D + K++LIGDS VGKS +L RF ++F+ TIG++F+ +T+ I K VK QIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R +T+AYYRGA G +LVYDI+ ++F +I +W + + HA+ ++L+GNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
E R V + + A++ G+ F+E+SA NV F T+
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 149 bits (377), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
D+ +V++IG VGK+ ++ RF + F K+T+GV+F+ +T+ ++ K ++ QIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+ ++TSAYYR A G +LVYDI+++++FD +P+W++ + +A ++ ++L+GNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 135 EEQRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMTVLTEIFN 180
E R + + ++FAQ+ G+ F E SA + NV+ F+ ++ +I
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 103/157 (65%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+SAVGKS ++ RF + +F ++TIG F T+T+ + +VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +F W++EL+ A NIVI L GNK+DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F+ETSA A NV FM +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 103/157 (65%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+SAVGKS ++ RF + +F ++TI F T+T+ + +VK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +F W++EL+ A NIVI L GNK+DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F+ETSA A NV FM +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 103/157 (65%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+G+SAVGKS ++ RF + +F ++TIG F T+T+ + +VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
RY ++ YYRGA A++VYDI+ +SF W++EL+ A NIVI L GNK+DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
RAV ++A+ +A L F ETSA + NV F +
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAI 164
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
D + K++LIGDS VGKS +L RF ++F+ TIG++F+ +T+ I K VK Q+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
GQER+R +T+AYYRGA G +LVYD++ ++F +I +W + + HA+ ++L+GNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
E R V + + A++ G+ F+E+SA NV F T+
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDT 73
D FKV+L+GDS VGK+ +L RF F + +T+G++F+ + L + VK Q+WDT
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
AGQER+R+VT AYYR A +L+YD++ + SFD+I WL E+ +A ++ ++L+GNK D
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+R V ED ++ A++ GL F+ETSA NV+ AF + E+
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 106/161 (65%)
Query: 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI 70
+ DY FK+++IG+S+VGK+ L R+A + F+ +T+G++F+ +T+ K +K QI
Sbjct: 2 SHXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
Query: 71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130
WDTAG ERYR +T+AYYRGA G +L YDI+ +SF+ + W ++++++ N ++L+GN
Sbjct: 62 WDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121
Query: 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
K D E++R V +E ++ A G F E SA + NV+ F
Sbjct: 122 KCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 116/172 (67%), Gaps = 4/172 (2%)
Query: 3 SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
S G +G+P +K FK+V +G+ +VGK+ ++ RF + F +ATIG++F ++T+ ++
Sbjct: 4 SSGDFGNPLRK----FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 59
Query: 63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN 122
++V+ Q+WDTAGQER+R++ +Y R + A++VYDI+ SF +W++++R+ +
Sbjct: 60 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD 119
Query: 123 IVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
++I+L+GNK+DL ++R V TE+ + A++ + F+ETSA NV+ F V
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 1 MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
M++GG +G+P +K FK+V +G+ +VGK+ ++ RF + F +ATIG++F ++T+
Sbjct: 1 MSTGGDFGNPLRK----FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 56
Query: 61 IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
++ ++++ Q+WDTAG ER+R++ +Y R + A++VYDI+ SF +W++++R+
Sbjct: 57 LEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 116
Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
+++I+L+GNK+DL ++R V E+ + A++ + F+ETSA NV+ F V
Sbjct: 117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 1 MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
M++GG +G+P +K FK+V +G+ +VGK+ ++ RF + F +ATIG++F ++T+
Sbjct: 4 MSTGGDFGNPLRK----FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 59
Query: 61 IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
++ ++V+ Q+WDTAG ER+R++ +Y R + A++VYDI+ SF +W++++R+
Sbjct: 60 LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 119
Query: 121 KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
+++I+L+GNK+DL ++R V E+ + A++ + F+ETSA NV+ F V
Sbjct: 120 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 98/157 (62%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
KV L+GD+ VGKS I+ RF + F + TIG F T+T+ Q++ K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
R+RA+ YYRG+ A++VYDI++ ++F + W+ ELR H +IV+ + GNK DL +
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
R V DAK++A F+ETSA A N+ F+ +
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 107/159 (67%), Gaps = 3/159 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+VL+G++AVGKS I+ RF N+F+ + + TIG F T+ + I +VK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD-LEE- 136
+ ++ YYR A A++VYD+++ QSF W++EL A K+I+I L+GNK D L+E
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 137 -QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
+R V E+ ++ A+++GL F ETSA NV + F+ +
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 6/184 (3%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K+++IG+S VGKS +L RF + F + ATIGV+F+ +T+ + K IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN-IVIILIGNKSDLEE 136
R+R +T +YYRGA G +LVYD++RR +F + WL EL ++ +N IV L+GNK D +E
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNG 196
R V + +FA+K F+E SA V+ AF ++ + I+ L E Q +G
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEK---IIQTPGLWESENQNSG 191
Query: 197 NPAS 200
P+S
Sbjct: 192 -PSS 194
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 97/157 (61%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
KV L+GD+ VGKS I+ RF + F + TIG F T+T+ Q++ K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
R+RA+ YYRG+ A++VYDI++ ++F + W+ ELR H +IV+ + GNK DL +
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
R V DAK++A F+ETSA A N+ F+ +
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 6/167 (3%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+VL GD+AVGKS L R +NEF + AT+GV+FQ +TL++ + Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL--- 134
R+R++ +Y+R A G +L+YD++ +SF +I W++ + A + + I+L+GNK+D+
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 135 ---EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
E Q+ VP ++ A G F ETSA + +N+ A + + E+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 111/167 (66%), Gaps = 4/167 (2%)
Query: 8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
G P +K FK+V +G+ +VGK+ ++ RF + F +ATIG++F ++T+ ++ ++++
Sbjct: 1 GSPLRK----FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIR 56
Query: 68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
Q+WDTAGQER+R++ +Y R + A++VYDI+ SF +W++++R+ +++I+L
Sbjct: 57 LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 116
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
+GNK+DL ++R V E+ + A++ + F+ETSA NV+ F V
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 114/175 (65%), Gaps = 11/175 (6%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH----------K 64
DY+ K + +GDS VGK+ +L ++ +F+ T+G++F+ + +V + +
Sbjct: 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNI 123
+ Q+WDTAG ER+R++T+A++R A+G +L++D++ QSF ++ W+ +L+ HA +N
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
I+L GNKSDLE+QRAV E+A+E A+K G+ + ETSA TN+ +A +L I
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 113/175 (64%), Gaps = 11/175 (6%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS--------- 65
DY+ K++ +GDS VGK+ L R+ N+F+ T+G++F+ + +V +
Sbjct: 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 66 -VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNI 123
V Q+WDTAGQER+R++T+A++R A+G +L++D++ +QSF ++ W+ +L+++A +N
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
I+LIGNK+DL +QR V A+E A K G+ + ETSA NVE A T+L I
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 108/157 (68%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+V +G+ +VGK+ ++ RF + F +ATIG++F ++T+ ++ ++V+ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
R+R++ +Y R + A++VYDI+ SF +W++++R+ +++I+L+GNK+DL ++
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
R + E+ ++ A++ + F+ETSA NV+ F V
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 127/222 (57%), Gaps = 23/222 (10%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------- 64
DY+ K++ +GDS VGK+ L R+ N+F+ T+G++F+ + +V +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNI 123
V Q+WDTAG ER+R++T+A++R A+G +L++D++ +QSF ++ W+ +L+++A +N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVN 183
I+LIGNK+DL +QR V A+E A+K G+ + ETSA NVE + T+L I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 184 K--KNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223
K + + GN L G+K PA+ C
Sbjct: 189 KCVEKTQVPDTVNGGNSGKLDGEK----------PAEKKCAC 220
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 107/157 (68%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+V +G+ +VGK+ ++ RF + F +ATIG++F ++T+ ++ ++V+ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
R+R++ +Y R + A++VYDI+ SF +W++++R+ +++I+L+GNK+DL ++
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
R V E+ + A++ + F+ETSA NV+ F V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 111/167 (66%), Gaps = 4/167 (2%)
Query: 8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVK 67
G+P +K FK+V +G+ +VGK+ ++ RF + F +ATIG++F ++T+ ++ ++V+
Sbjct: 1 GNPLRK----FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 56
Query: 68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIIL 127
Q+WDTAG ER+R++ +Y R + A++VYDI+ SF +W++++R+ +++I+L
Sbjct: 57 LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 116
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
+GNK+DL ++R V E+ + A++ + F+ETSA NV+ F V
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 104/154 (67%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V +G+ AVGK+ I+ RF + F + ++TIG++F ++TL + V+ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
R+R++ +Y R + A++VYDI+ RQSF++ +W++++ + K+++I L+GNK+DL +
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
R V E+ + AQ+ F ETSA N++ F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 133 bits (334), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 115/181 (63%), Gaps = 11/181 (6%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------- 64
DY+ K++ +GDS VGK+ L R+ N+F+ T+G++F+ + +V +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNI 123
V Q+WDTAG ER+R++T+A++R A+G +L++D++ +QSF ++ W+ +L+++A +N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVN 183
I+LIGNK+DL +QR V A+E A+K G+ + ETSA NVE + T+L I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 184 K 184
K
Sbjct: 189 K 189
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 96/159 (60%)
Query: 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
Y FKVVL+G+ VGK+ ++ R+ N+F+ T+G F T+ L I K V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
QER+ A+ YYR + GA+LVYDI+ SF + W++ELR I + ++GNK DLE
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
++R V ++A+ +A+ G TSA + +E F+ +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 90/115 (78%)
Query: 20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79
++LIGDS VGKS +L RFA + ++ +TIGV+F+ RT+ + K++K QIWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134
R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+ +A +N+ +L+GNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 95/159 (59%)
Query: 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
Y FKVVL+G+ VGK+ ++ R+ N+F+ T+ F T+ L I K V IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
QER+ A+ YYR + GA+LVYDI+ SF + W++ELR I + ++GNK DLE
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
++R V ++A+ +A+ G TSA + +E F+ +
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 177
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 110/175 (62%), Gaps = 11/175 (6%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------- 64
DY+ K++ +GDS VGK+ L R+ N+F+ T+G++F+ + +V +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNI 123
V Q+WDTAG ER+R++T+A++R A G +L +D++ +QSF ++ W +L+++A +N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
I+LIGNK+DL +QR V A+E A+K G+ + ETSA NVE + T+L I
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 95/159 (59%)
Query: 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
Y FKVVL+G+ VGK+ ++ R+ N+F+ T+ F T+ L I K V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135
QER+ A+ YYR + GA+LVYDI+ SF + W++ELR I + ++GNK DLE
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
++R V ++A+ +A+ G TSA + +E F+ +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 110/175 (62%), Gaps = 11/175 (6%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------- 64
DY+ K++ +GDS VGK+ L R+ N+F+ T+G++F+ + +V +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNI 123
V Q+WDTAG ER+R++T+A++R A G +L +D++ +QSF ++ W +L+++A +N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
I+LIGNK+DL +QR V A+E A+K G+ + ETSA NVE + T+L I
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+FK+++IGDS VGK+ + RF F ++ATIGV+F+ R + I + +K Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 77 ERYR-AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN-IVIILIGNKSDL 134
ER+R ++ YYR + VYD++ SF +P W+EE + H N I IL+GNK DL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATN---VENAFMTV 174
VPT+ A++FA + ETSA + VE FMT+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 106/170 (62%), Gaps = 6/170 (3%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+ KV+L+GD VGKS ++ R+ N+F + TIGVEF R L + + V QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
ER++++ + +YRGA +L + + RQSF+++ W +E +AD ++ +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 133 DLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNI 181
D +E R V TE+A+ + + G + +LETSA + TNV AF + ++ +
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 95/163 (58%), Gaps = 5/163 (3%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+FK+++IGDS VGK+ + RF F ++ATIGV+F+ R + I + +K Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 77 ERYR-AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN-IVIILIGNKSDL 134
ER+R ++ YYR + VYD + SF +P W+EE + H N I IL+GNK DL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATN---VENAFMTV 174
VPT+ A++FA ETSA + VE F T+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 103/167 (61%), Gaps = 6/167 (3%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+FK++L+GD VGKS ++ R+ N+F TIGVEF + L + V QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
ER+R++ + +YRG+ +L + + QSF ++ W +E +AD ++ +++GNK+
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 133 DLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEI 178
D++E R V TE+A+ + + G + + ETSA ++TNV AF + I
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+FKV+L+GD VGKS ++ R+ N+F TIGVEF + L + V QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
ER+R++ + +YRG+ +L + + QSF ++ W +E +AD ++ +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 133 DLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
D+ E R V TE+A+ + + G + + ETSA +ATNV AF
Sbjct: 129 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 102/163 (62%), Gaps = 6/163 (3%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+ KV+++GDS VGK+ ++ ++ +FS KATIG +F T+ +++ + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
ER++++ A+YRGA +LV+D++ +F + W +E A +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 133 DLEEQRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTV 174
DL E R V T+ A+ + K + + ETSA EA NVE AF T+
Sbjct: 128 DL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+FKV+L+GD VGKS ++ R+ N+F TIGVEF + L + V QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
ER+R++ + +YRG+ +L + + QSF ++ W +E +AD ++ +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 133 DLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
D+ E R V TE+A+ + + G + + ETSA +ATNV AF
Sbjct: 127 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 102/163 (62%), Gaps = 6/163 (3%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+ KV+++GDS VGK+ ++ ++ +FS KATIG +F T+ +++ + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
ER++++ A+YRGA +LV+D++ +F + W +E A +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 133 DLEEQRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTV 174
DL E R V T+ A+ + K + + ETSA EA NVE AF T+
Sbjct: 128 DL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 101/163 (61%), Gaps = 6/163 (3%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+ KV+++GDS VGK+ ++ ++ +FS KATIG +F T+ +++ + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
ER++++ A+YRGA +LV+D++ +F + W +E A +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 133 DLEEQRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTV 174
D E R V T+ A+ + K + + ETSA EA NVE AF T+
Sbjct: 128 DF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 102/164 (62%), Gaps = 11/164 (6%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAG 75
+ KV+++GDS VGK+ ++ R+ +++S KATIG +F T+ + + K Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN----IVIILIGNK 131
QER++++ A+YRGA +LVYD++ SF++I W +E HA+ N +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 132 SDLEEQRAVPTE-DAKEFAQKEG---LFFLETSALEATNVENAF 171
D EE + + +E A+E A+ G LF TSA A NV+ AF
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL--TSAKNAINVDTAF 169
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 101/163 (61%), Gaps = 6/163 (3%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+ KV+++GDS VGK+ ++ ++ +FS KATIG +F T+ +++ + V QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKS 132
ER++++ A+YRGA +LV+D++ +F + W +E A +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 133 DLEEQRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTV 174
DL E R V T+ A+ + K + + ETSA EA NVE AF T+
Sbjct: 128 DL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++G+ AVGKS ++ R+ + F+ D K TIGV+F R + + + V+ +WDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138
+ A+T AYYRGA +LV+ + R+SF+ I W E++ + +I L+ NK DL +
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125
Query: 139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
+ E+A+ A++ L F TS E NV F
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 41/204 (20%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI---------------- 61
+K VL+G+S+VGKS I+ R ++ F ++ TIG F T + +
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 62 --------------QHKS-------VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS 100
QH + +K IWDTAGQERY ++ YYRGA A++V+DIS
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 101 RRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETS 160
+ D W+ +L+ N +IIL+ NK D + + V + +++AQ L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 161 ALEATNVENAFMTVLTEIF-NIVN 183
A TN++N F + EI+ NI+N
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNIIN 208
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G VGKS + +F +EF D + T ++ + +V+ + V+ I DTAGQE
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQED 74
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
Y A+ Y+R G + V+ I+ +SF + E+ LR D+N+ +L+GNKSDLE++
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V E+AK A++ + ++ETSA NV+ F ++ EI
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G VGKS + +F +EF D + T ++ + +V+ + V+ I DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQED 78
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
Y A+ Y+R G + V+ I+ +SF + E+ LR D+N+ +L+GNKSDLE++
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V E+AK A++ + ++ETSA NV+ F ++ EI
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G VGKS + +F +EF D + T ++ + +V+ + V+ I DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQED 66
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
Y A+ Y+R G + V+ I+ +SF + E+ LR D+N+ +L+GNKSDLE++
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V E+AK A++ + ++ETSA NV+ F ++ EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 99/162 (61%), Gaps = 3/162 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G VGKS + +F +EF D + T ++ + +V+ + V+ I DTAG E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGLED 67
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKN-IVIILIGNKSDLEE 136
Y A+ Y+R G +LV+ I+ +SF + E+ LR A+++ I ++++GNKSDLEE
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+R VP E+A+ A++ G+ ++ETSA NV+ F ++ EI
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 99/162 (61%), Gaps = 3/162 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G VGKS + +F +EF D + T ++ + +V+ + V+ I DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGLED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKN-IVIILIGNKSDLEE 136
Y A+ Y+R G +LV+ I+ +SF + E+ LR A+++ I ++++GNKSDLEE
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+R VP E+A+ A++ G+ ++ETSA NV+ F ++ EI
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G VGKS + +F +EF D + T ++ + +V+ + V+ I DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQED 64
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
Y A+ Y+R G + V+ I+ +SF + E+ LR D+N+ +L+GNKSDLE++
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V E+AK A + + ++ETSA NV+ F ++ EI
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G VGKS + +F +EF D + T ++ + +V+ + V+ I DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGLED 66
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQ 137
Y A+ Y+R G + V+ I+ +SF + E+ LR D+N+ +L+GNKSDLE++
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V E+AK A++ + ++ETSA NV+ F ++ EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF AT+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
+Y + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF ATIGVE + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++E+
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 131
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ F +K+ L + + SA N E F+
Sbjct: 132 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 164
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + + +N F + TI ++ + +VI ++ I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
Y A+ Y R G + V+ I+ +SF+ I + E+++ D +++ ++L+GNKSDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V T+ A++ A+ G+ F+ETSA V++AF T++ EI
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF ATIGVE + +K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++E+
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 124
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ F +K+ L + + SA N E F+
Sbjct: 125 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 157
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF ATIGVE + +K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++E+
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 123
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ F +K+ L + + SA N E F+
Sbjct: 124 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 156
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF AT+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF AT+GVE +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 134
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF AT+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF AT+GVE +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 122
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 123 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 155
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF AT+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF AT+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 4/168 (2%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQ 76
K+V++GD A GK+ + FA+ F K TIG++F R + + + +V QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRW---LEELRSHADKNIVIILIGNKSD 133
+ Y GA G +LVYDI+ QSF+++ W ++++ ++ ++ L+GNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI 181
LE R + E F Q+ G SA +V F V EI I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + + +N F + TI ++ + +VI ++ I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
Y A+ Y R G + V+ I+ +SF+ I + E+++ D +++ ++L+GNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V T+ A++ A+ G+ F+ETSA V++AF T++ EI
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF AT+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++ +D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF AT+GVE +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 131
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 132 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 164
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF AT+GVE +K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 125
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 126 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 158
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R EF AT+GVE +K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + + +N F + TI ++ + +VI ++ I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
Y A+ Y R G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V + A++ A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + + +N F + TI ++ + +VI ++ I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
Y A+ Y R G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V + A++ A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
FK+VL+GD GK+ + R E AT+GVE +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137
++ + YY A A++++D++ R ++ ++P W +L +NI I+L GNK D++++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 134
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172
+ + F +K+ L + + SA N E F+
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + + +N F + TI ++ + +VI ++ I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
Y A+ Y R G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V + A++ A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + + +N F + TI ++ + +VI ++ I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
Y A+ Y R G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V + A++ A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 2/163 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIG-VEFQTRTLVIQHKSVKAQIWDTAGQ 76
+K+ LIGD VGK+ + R F + AT+G V L Q +K +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136
E+ + YY GA GA+L +D++ R + ++ RW++E ++ I++ NK D++
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179
++ + + E + + + E SA A N F+ L IF
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH-LARIF 173
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I + E+++ D +++ ++L+GNKSDL R V T+ A++
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ F+ETSA V++AF T++ EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I + E+++ D +++ ++L+GNKSDL R V T+ A++
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ F+ETSA V++AF T++ EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KVV++G VGK+ + +F EFS T+ + ++ + + + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRS-HADKNIVIILIGNKSDLEEQ 137
Y + ++ G G +LVY ++ SF I ++L H + ++L+GNK+DL +
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVN 183
R V + K+ A+ G F+E+SA E + F V+ EI + N
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVEN 190
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 102/191 (53%), Gaps = 7/191 (3%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + + +N F + TI ++ + +VI ++ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
Y A+ Y R G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNG 196
R V + A++ A+ G+ ++ETSA VE+AF T++ EI + L
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI----RQHKLRKLNPPDES 177
Query: 197 NPASLSGKKIL 207
P +S K +L
Sbjct: 178 GPGCMSCKCVL 188
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNKSDL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF I + E+++ D + V ++L+GNK DL R V T+ A E
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHEL 151
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ F+ETSA VE+AF T++ EI
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KVVL+GD GK+ +L FA F T+ + L ++ K V IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ 137
Y + +Y A +L +D++ SFD+I RW E+ +H K + II++G K+DL +
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 138 RA------------VPTEDAKEFAQKEG-LFFLETSALEATNVENAF 171
++ V +E A+ G + +LE SA NV F
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + +F ++ F D TI + T+ VI ++ + I DTAGQE + A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKN-IVIILIGNKSDLEEQRAVPTEDAKEF 148
G +LV+ ++ R SF+ I ++ ++ D++ +ILIGNK+DL+ QR V E+ ++
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 149 AQKEGLFFLETSALEATNVENAF 171
A++ + ++E SA NV+ AF
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAF 159
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 99/176 (56%), Gaps = 7/176 (3%)
Query: 4 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH 63
GGG G + +K+V++G VGKS + + +N F + TI ++ + +VI
Sbjct: 1 GGGSGGSMTE----YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDG 55
Query: 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI 123
++ I DTAGQE Y A+ Y R G + V+ I+ +SF+ I ++ E+++ D +
Sbjct: 56 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 115
Query: 124 V-IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
V ++L+GNK DL R V + A++ A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 116 VPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNKSDL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V +GD AVGK+ +L + N F D T+ F + +V+ +V +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 66
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ 137
Y + YRGA +L + + + S++++ +W+ ELR +A + IIL+G K DL +
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
Query: 138 R--------AVP--TEDAKEFAQKEG-LFFLETSALEATNVENAF 171
+ AVP T +E + G ++E S+ NV+ F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 14/169 (8%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V +GD AVGK+ +L + N F D T+ F +V+ +V +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 66
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ 137
Y + YRGA +L + + + S+++I +WL EL+ +A I I+L+G K DL +
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRDD 125
Query: 138 R----------AVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVL 175
+ ++ T +E + G + +LE S+ NV+ F T +
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAG E Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I + E+++ D +++ ++L+GNK DL R V T+ A++
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDL 151
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ F+ETSA V++AF T++ EI
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + +F + F + TI ++ + + + + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
++ A+ Y + G LVY I+ + +F+ + E+ LR +++ +IL+GNK DLE+
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 137 QRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTVLTEI 178
+R V E + A Q FLE+SA NV F ++ +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + +F ++ F D TI + T+ + + I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
G +LV+ I+ RQSF+ + + + LR + ++L+GNK+DLE QR VP +A F
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 149 AQKEGLFFLETSALEATNVENAF 171
+ + E SA NV+ AF
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAF 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + + +N F + TI ++ + +VI ++ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
Y A+ Y R G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V + A++ A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 19 KVVLIGDSAVGKSQILARFAR--NEFSLDSKATIGVEFQTRTLVIQHKSVKAQIW--DTA 74
KV ++G++ VGKS +++ F ++F D T GVE + I +V +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRS---HADKNIVIILIGNK 131
G + Y+ S Y+ G A+LV+D+S +SF+ W E L+S ++ + +L+ NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 132 SDLEEQR-AVPTEDAKEFAQKEGLFFLETSA-LEATNVENAFMTVLTEIF 179
+DL QR V + A+++A L F + SA + + F+++ T +
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + +F + F TI ++ + + + + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
++ A+ Y + G LVY I+ + +F+ + E+ LR ++ +IL+GNK DLE+
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 137 QRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTVLTEI 178
+R V E + A Q FLE+SA NV F ++ +I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + +F + F TI ++ + + + + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
++ A+ Y + G LVY I+ + +F+ + E+ LR +++ +IL+GNK DLE+
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 137 QRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTVLTEI 178
+R V E + A Q FLE+SA NV F ++ +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + +I ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + +F + F TI ++ + + + + +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
++ A+ Y + G LVY I+ + +F+ + E+ LR ++ +IL+GNK DLE+
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 137 QRAVPTEDAKEFA-QKEGLFFLETSALEATNVENAFMTVLTEI 178
+R V E + A Q FLE+SA NV F ++ +I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GN+ DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGK+ + + +N F + TI ++ + +VI ++ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
Y A+ Y R G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V + A++ A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + +I ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAG+E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V +GD AVGK+ +L + N F D T+ F + +V+ +V +WDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQED 68
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ 137
Y + YRGA +L + + + S++++ +W+ EL+ +A + I+L+G K DL +
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDD 127
Query: 138 R--------AVP--TEDAKEFAQKEGL-FFLETSALEATNVENAF 171
+ AVP T +E + G ++E S+ NV+ F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ E
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREF 163
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F++++F T+ E + + K V+ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
+Q V E+ ++ A + G F ++E SA V F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 12/180 (6%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V +GD AVGK+ +L + N+F D T+ F + + + V +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE 136
Y + YRGA +L + + + S++++ +W+ ELR A N+ I+L+G K DL +
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127
Query: 137 QRAVPTEDAKEFAQKEG---------LFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 187
+ + +G ++E S+ NV+ F T + + +K +
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEV 187
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F++++F T+ E + + K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
+Q V E+ ++ A + G F ++E SA V E+F + +
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 178
Query: 185 KNLTAGEGQ 193
L A G+
Sbjct: 179 AALQARRGK 187
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F++++F T+ E + + K V+ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
+Q V E+ ++ A + G F ++E SA V E+F + +
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 179
Query: 185 KNLTAGEGQ 193
L A G+
Sbjct: 180 AALQARRGK 188
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F++++F T+ E + + K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
+Q V E+ ++ A + G F ++E SA V E+F + +
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 176
Query: 185 KNLTAGEGQ 193
L A G+
Sbjct: 177 AALQARRGK 185
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAG E Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F++++F T+ E + + K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
+Q V E+ ++ A + G F ++E SA V E+F + +
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 178
Query: 185 KNLTAGEGQ 193
L A G+
Sbjct: 179 AALQARRGK 187
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F++++F T+ E + + K V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
+Q V E+ ++ A + G F ++E SA V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F++++F T+ E + + K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
+Q V E+ ++ A + G F ++E SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + + +N F + TI ++ + +VI ++ I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
Y A+ Y R G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V + A++ A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+K+V++G VGKS + + +N F + TI ++ + +VI ++ I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136
Y A+ Y R G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V + A++ A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F++++F T+ E + + K V+ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
+Q V E+ ++ A + G F ++E SA V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 18/176 (10%)
Query: 5 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK 64
G + DPNQ + K+V++GDS GK+ +L FA++ F + T+ E T + I +
Sbjct: 18 GSHMDPNQNVK--CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQ 74
Query: 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNI 123
++ +WDT+G Y V Y + ++ +DISR ++ D + +W E++ N
Sbjct: 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNT 133
Query: 124 VIILIGNKSDL------------EEQRAVPTEDAKEFAQKEG-LFFLETSALEATN 166
++L+G KSDL Q V + A++ G ++E SAL++ N
Sbjct: 134 KMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+ + G + VGKS ++ RF F + T+ ++ + I + V +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 88
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHI---PRWLEELRSHADKNIVIILIGNKSDLE 135
+ R G +LVYDI+ R SF+ + L+E++ KN+ +IL+GNK+DL+
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLD 145
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEAT-NVENAFMTVLTEI 178
R V TE+ ++ A + F E SA N+ F + E+
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + + +N F + TI ++ + +VI ++ I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAKEF 148
G + V+ I+ +SF+ I ++ E+++ D + V ++L+GNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A+ G+ ++ETSA VE+AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F++++F T+ E + + K V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL +
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 137 -----------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
Q V +E+ ++ A + F +LE SA V F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F++++F T+ E + + K V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL +
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 137 -----------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
Q V +E+ ++ A + F +LE SA V F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K VL+GD AVGK+ ++ + N + + T F + + + + V+ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
+ + Y +L + + SF ++ +W+ E+R H K IIL+G +SDL E
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-PIILVGTQSDLRED 139
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
++ VP E AK A++ + ++E SAL N++ F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F++++F T+ E + + K V+ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
+Q V + ++ A + G F ++E SA V F
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+ ++G +VGKS + +F +F TI F T+ + + + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEEQ 137
Y Y G +LVY ++ +SF+ I +L K I I+L+GNK DL +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177
R + E+ K A+ FLE+SA E + F ++ E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+ ++G +VGKS + +F +F + TI F T+ + + + Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEEQ 137
Y Y G +LVY ++ +SF+ I +L K I I+L+GNK DL +
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177
R + E+ K A+ FLE+SA E + F ++ E
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 24/189 (12%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L ++++F T+ E + + K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
+Q V E+ ++ A + G F ++E SA V E+F + +
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 176
Query: 185 KNLTAGEGQ 193
L A G+
Sbjct: 177 AALQARRGK 185
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 24/189 (12%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L ++++F T+ E + + K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTVLTEIFNIVNK 184
+Q V E+ ++ A + G F ++E SA V E+F + +
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATR 176
Query: 185 KNLTAGEGQ 193
L A G+
Sbjct: 177 AALQARRGK 185
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L ++++F T+ E + + K V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
+Q V E+ ++ A + G F ++E SA V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L ++++F T+ E + + K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
+Q V E+ ++ A + G F ++E SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L ++++F T+ E + + K V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 136 ----------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
+Q V E+ ++ A + G F ++E SA V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L F+++EF T+ E + + K V+ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE-- 135
Y + Y ++ + + S ++IP +W+ E++ H N+ IIL+ NK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 136 ----------EQRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMT 173
+Q V T+D + A + + +LE SA V F T
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+ ++G +VGKS + +F +F TI F T+ + + + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEEQ 137
Y Y G +LVY ++ +SF+ I +L K I I+L+GNK DL +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177
R + E+ K A+ FLE+SA E + F ++ E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+ ++G +VGKS + +F +F TI F T+ + + + Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEEQ 137
Y Y G +LVY ++ +SF+ I +L K I I+L+GNK DL +
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177
R + E+ K A+ FLE+SA E + F ++ E
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 3 SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ 62
S DPNQ + K+V++GDS GK+ +L FA++ F + T+ E T + I
Sbjct: 11 SSKSIMDPNQNVK--CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEID 67
Query: 63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADK 121
+ ++ +WDT+G Y V Y + ++ +DISR ++ D + +W E++
Sbjct: 68 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P 126
Query: 122 NIVIILIGNKSDL------------EEQRAVPTEDAKEFAQKEG-LFFLETSALEATN 166
N ++L+G KSDL Q V + A++ G ++E SAL++ N
Sbjct: 127 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 5 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK 64
G G P +K K+V++GD A GK+ +L ++++F T+ E + + K
Sbjct: 1 GAMGSPIRK-----KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGK 54
Query: 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNI 123
V+ +WDTAG E Y + Y ++ + I S ++IP +W E++ H N+
Sbjct: 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNV 113
Query: 124 VIILIGNKSDLE------------EQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENA 170
IIL+GNK DL +Q V E+ ++ A + G F ++E SA V
Sbjct: 114 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 173
Query: 171 F 171
F
Sbjct: 174 F 174
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 13/186 (6%)
Query: 1 MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
M +G G + +K K+V++GD AVGK+ +L F++ E A + F+ + V
Sbjct: 10 MNTGAGKIENGKK---ALKIVVVGDGAVGKTCLLLAFSKGEIP---TAYVPTVFENFSHV 63
Query: 61 IQHKSVK--AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRS 117
+++K+ + +WDTAGQE Y + Y + +L + ++ R SFD+I +W E++
Sbjct: 64 MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 123
Query: 118 HADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTV 174
+ D +L+G K DL + + V ++ + QK G ++E S++ + F
Sbjct: 124 YID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 182
Query: 175 LTEIFN 180
+ IF+
Sbjct: 183 VDCIFS 188
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 13/186 (6%)
Query: 1 MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV 60
M +G G + +K K+V++GD AVGK+ +L F++ E A + F+ + V
Sbjct: 9 MNTGAGKIENGKK---ALKIVVVGDGAVGKTCLLLAFSKGEIP---TAYVPTVFENFSHV 62
Query: 61 IQHKSVK--AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRS 117
+++K+ + +WDTAGQE Y + Y + +L + ++ R SFD+I +W E++
Sbjct: 63 MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 122
Query: 118 HADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEGLF-FLETSALEATNVENAFMTV 174
+ D +L+G K DL + + V ++ + QK G ++E S++ + F
Sbjct: 123 YID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 181
Query: 175 LTEIFN 180
+ IF+
Sbjct: 182 VDCIFS 187
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L ++++F T+ E + + K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + I S ++IP +W E++ H N+ IIL+GNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 137 -----------QRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
Q V +E+ ++ A + F +LE SA V F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 64
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y +++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWD 72
K+ K V++GD AVGK+ +L + N F + T+ + +V K V +WD
Sbjct: 3 KLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWD 61
Query: 73 TAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNK 131
TAGQE Y + Y +++ + + SF+++ +W E+R H N IIL+G K
Sbjct: 62 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTK 120
Query: 132 SD----------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
D L+E++ P + A + + +LE SAL ++ F
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y +++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y +++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 4 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH 63
GGG G Q I K V++GD AVGK+ +L + N F + T+ + +V
Sbjct: 1 GGGSGGSMQAI----KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DS 55
Query: 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKN 122
K V +WDTAGQE Y + Y ++ + + S++++ +W E+R H +
Sbjct: 56 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PS 114
Query: 123 IVIILIGNKSD----------LEEQRAVPTEDAKEFA---QKEGLFFLETSALEATNVEN 169
IIL+G K D L+E++ P + A + + + +LE SAL ++
Sbjct: 115 TPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKT 174
Query: 170 AF 171
F
Sbjct: 175 VF 176
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N FS + T+ + +V K V +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQED 73
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD---- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 132
Query: 134 ------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 89
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 69
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 81
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 16/162 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GDS GK+ +L FA++ F + T+ E T + I + ++ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDL--- 134
Y V Y + ++ +DISR ++ D + +W E++ N ++L+G KSDL
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126
Query: 135 ---------EEQRAVPTEDAKEFAQKEG-LFFLETSALEATN 166
Q V + A++ G ++E SAL++ N
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + +F + F D TI + T + ++ + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
G ++VY ++ + SF+H+ R+ + LR ++ +IL+ NK DL R V + KE
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 149 AQKEGLFFLETSALEAT-NVENAF 171
A K + ++ETSA + NV+ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + +F + F D TI + T + ++ + DTAGQE + A+ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 84
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
G ++VY ++ + SF+H+ R+ + LR ++ +IL+ NK DL R V + KE
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 149 AQKEGLFFLETSALEAT-NVENAF 171
A K + ++ETSA + NV+ F
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTF 168
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 21/182 (11%)
Query: 4 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH 63
GGG G +Q I K V++GD AVGK+ +L + N F + T+ + +V
Sbjct: 1 GGGSGG-SQAI----KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DS 54
Query: 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKN 122
K V +WDTAGQE Y + Y ++ + + S++++ +W E+R H +
Sbjct: 55 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PS 113
Query: 123 IVIILIGNKSD----------LEEQRAVPTEDAKEFA---QKEGLFFLETSALEATNVEN 169
IIL+G K D L+E++ P + A + + + +LE SAL ++
Sbjct: 114 TPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKT 173
Query: 170 AF 171
F
Sbjct: 174 VF 175
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKS---VKAQIWDT 73
++VVLIG+ VGKS + FA S+DS +G + RTL++ +S + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 74 AGQERY-----RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIIL 127
G+ + V AY ++VY I+ R SF+ +LR + ++I IIL
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+GNKSDL R V + + A F+ETSA NV+ F ++ ++
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + +F + F + TI ++ T + ++ + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
G ++VY ++ + SF+H+ R+ + LR ++ +IL+ NK DL R V + KE
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 149 AQKEGLFFLETSALEAT-NVENAF 171
A K + ++ETSA + NV+ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N + T+ + +V K V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 89
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKS---VKAQIWDT 73
++VVLIG+ VGKS + FA S+DS +G + RTL++ +S + +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 74 AGQERY-----RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIIL 127
G+ + V AY ++VY I+ R SF+ +LR + ++I IIL
Sbjct: 98 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+GNKSDL R V + + A F+ETSA NV+ F ++ ++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 35/187 (18%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 64
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRR-------------------QSFDHI-PRWLEELRS 117
Y + Y VG DI+ R SF+++ +W E+R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 118 HADKNIVIILIGNKSD----------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEA 164
H N IIL+G K D L+E++ P + A + + +LE SAL
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 165 TNVENAF 171
++ F
Sbjct: 184 RGLKTVF 190
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+ K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGL 213
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD-- 133
E Y + Y ++ + + SF H+ +W E+R H N IIL+G K D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 134 --------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+ K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGL 213
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD-- 133
E Y + Y ++ + + SF H+ +W E+R H N IIL+G K D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 134 --------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + +F + F + TI + T + ++ + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 90 AVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
G ++VY ++ + SF+H+ R+ + LR ++ +IL+ NK DL R V + KE
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 149 AQKEGLFFLETSALEAT-NVENAF 171
A K + ++ETSA + NV+ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+ K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGL 213
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD-- 133
E Y + Y ++ + + SF H+ +W E+R H N IIL+G K D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 134 --------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+++VVL+GD VGK+ + + FA + D +G + RTL + + + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 77 ERYRAVTS--AYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIILIGNKSD 133
E+ S + +G ++VY I+ R SF+ +LR +H ++ IIL+GNK+D
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171
L R V E+ + A F+ETSA NV F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DSKPVNLGLWDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + S++++ +W E+R H + IIL+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 121
Query: 134 -------LEEQRAVPTEDAKEFA---QKEGLFFLETSALEATNVENAF 171
L+E++ P + A + + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAG E
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLED 90
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD---- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149
Query: 134 ------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLE 65
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSD--- 133
Y + Y ++ + + SF+++ +W E+R H N IIL+G K D
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 134 -------LEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVENAF 171
L+E++ P + A + + +LE SAL ++ F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 5/161 (3%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSV-KAQIWDTAGQ 76
++V + G VGKS ++ RF + F T VE R ++ KS+ QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPT--VEDTYRQVISCDKSICTLQITDTTGS 61
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHAD-KNIVIILIGNKSDL 134
++ A+ +LVY I+ RQS + + P + + D ++I I+L+GNK D
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121
Query: 135 EEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175
R V + +A+ A+ F+ETSA NV+ F +L
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKS---VKAQIWDT 73
++VVLIG+ VGKS + FA S+DS +G + RTL++ +S + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 74 AGQERY-----RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIIL 127
G+ + V AY ++VY I+ R SF+ +LR + ++I IIL
Sbjct: 67 KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+GNKSDL R V + + A F+ETSA NV+ F ++ ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKS---VKAQIWDT 73
++VVLIG+ VGKS + FA S+DS +G + RTL++ +S + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 74 AGQERY-----RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIIL 127
G+ + V AY ++VY I+ R SF+ +LR + ++I IIL
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+GNKSDL R V + + A F+ETSA NV+ F ++ ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 63
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE 136
Y + Y ++ + + SF+++ +W E+R H + I+L+G K DL +
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 137 QR 138
+
Sbjct: 123 DK 124
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ 137
Y + Y ++ + + SF+++ +W E+R H + I+L+G K DL +
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 122
Query: 138 R 138
+
Sbjct: 123 K 123
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N F + T+ + +V K V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQE 63
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE 136
Y + Y ++ + + SF+++ +W E+R H + I+L+G K DL +
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 137 QR 138
+
Sbjct: 123 DK 124
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 132
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 123
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 137 ------------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+ K V++GD AVGK+ +L +A + F + T+ + ++ + K ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLE 135
E Y + Y ++ + + SF ++ W+ EL+ +A N+ +LIG + DL
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 136 E------------QRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVLTEIFN 180
+ ++ + E ++ A++ G ++E SAL ++ F + I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+VL+GD GK+ +L A++ + T+ E T L + + V+ +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDL 134
Y V Y + +L +DISR ++ D + +W E+ + V +LIG K+DL
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDL 126
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+VL+GD GK+ +L A++ + T+ E T L + + V+ +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDL 134
Y V Y + +L +DISR ++ D + +W E+ + + ++LIG K+DL
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDL 143
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+VL+GD GK+ +L A++ + T+ E T L + + V+ +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDL 134
Y V Y + +L +DISR ++ D + +W E+ + V +LIG K+DL
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDL 127
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 28/179 (15%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFA--------RNEFSLDS-KATIGVEFQTRTLVIQHKS 65
D VFKV+L+G+S VGKS + F E S D+ + I V+ + TL++
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVY--- 66
Query: 66 VKAQIW---DTAG--QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRS-HA 119
IW D G Q+ A+ ++V+ ++ R+SF +P L LR+
Sbjct: 67 ---DIWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRP 116
Query: 120 DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
++ +IL+GNKSDL R V E+ + A +ETSA N F + +I
Sbjct: 117 HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N+F + T+ + T++I + + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 137 ------------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + + + T++I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKA---QIW 71
D +FKV+L+G+S VGKS + F + + + R +++ + V IW
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 72 ---DTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRS-HADKNIVIIL 127
D G R + + ++V+ ++ R+SF +P L LR+ ++ +IL
Sbjct: 81 EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 128 IGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
+GNKSDL R V E+ + A +ETSA N F + +I
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 125
Query: 137 ------------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + + S+ + T+G +T + +K+VK +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 377
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + YY G G + V D + R D + L + + + ++ +I++ NK DL +
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
K V++GD AVGK+ +L + N+ + T+ + T++I + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 137 ------------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K V++GD AVGK+ +L + N+F + T+ + T++I + ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE- 136
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL +
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 137 -----------QRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171
Q+ + E A++ A+ + + ++E SAL ++N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 30 KSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89
KS + +F F TI +F + + + +I DTAG E++ ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 90 AVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148
G +LVY + +QSF I P + +R + + +IL+GNK DLE +R V + + +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178
A++ G F+ETSA T V+ F ++ ++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + + S+ + T+G +T + +K+VK +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 68
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + YY G G + V D + R D + L + + + ++ +I++ NK DL +
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + + S+ + T+G +T + +K+VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + YY G G + V D + R D + L + + + ++ +I++ NK DL +
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 17 VFKVVLIGDSAVGKSQILARFA--------RNEFSLDS-KATIGVEFQTRTLVIQHKSVK 67
VFKV+L+G+S VGKS + F E S D+ + I V+ + TL++
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVY----- 56
Query: 68 AQIW---DTAG--QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRS-HADK 121
IW D G Q+ A+ ++V+ ++ R+SF +P L LR+
Sbjct: 57 -DIWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHH 108
Query: 122 NIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
++ +IL+GNKSDL R V E+ + A +ETSA N F + +I
Sbjct: 109 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G GK+ +L + E + + TIG +T +Q+K++ +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
R R++ YYR G + V D + R ++ + + + +N V ++ NK DL E
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPE 132
Query: 137 QRAVPTEDAKEFAQKEGL 154
+ A E +K GL
Sbjct: 133 AMS-----AAEITEKLGL 145
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + + S+ + T+G +T + +K+VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + YY G G + V D + R D + L + + + ++ +I++ NK DL +
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + + S+ + T+G +T + +K+VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + YY G G + V D + R D + L + + + ++ +I++ NK DL +
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%)
Query: 10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSV-KA 68
P Q DY +VV+ G VGKS ++ RF + F TI E R ++ KSV
Sbjct: 3 PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTI--EDTYRQVISCDKSVCTL 58
Query: 69 QIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDH---IPRWLEELRSHADKNIVI 125
QI DT G ++ A+ +LV+ ++ +QS + I + + +++ + +I +
Sbjct: 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPV 117
Query: 126 ILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176
+L+GNK D E QR V T +A+ AQ+ F+ETSA NV+ F +LT
Sbjct: 118 MLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
V+KV+L+G VGKS + F E +++A G + R++V+ + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIILIGNKSDLE 135
+ R + ++VY ++ + SF+ +LR + ++ IIL+GNKSDL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V ++ + A F+ETSA NV+ F V+ +I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
V+KV+L+G VGKS + F E +++A G + R++V+ + ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIILIGNKSDLE 135
+ R + ++VY ++ + SF+ +LR + ++ IIL+GNKSDL
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V ++ + A F+ETSA NV+ F V+ +I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
V+KV+L+G VGKS + F E +++A G + R++V+ + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR-SHADKNIVIILIGNKSDLE 135
+ R + ++VY ++ + SF+ +LR + ++ IIL+GNKSDL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178
R V ++ + A F+ETSA NV+ F V+ +I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
+++ +G A GK+ IL + + S+ + T+G +T + +K+VK +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
R + YY G G + V D + R D + L + ++ +I++ NK DL +
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD 115
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G GK+ +L + E + + TIG +T +Q+K++ +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
R R++ YYR G + V D + R ++ + + + +N ++ NK DL E
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 132
Query: 137 QRAVPTEDAKEFAQKEGL 154
+ A E +K GL
Sbjct: 133 AMS-----AAEITEKLGL 145
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G GK+ +L + E + + TIG +T +Q+K++ +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
R R++ YYR G + V D + R ++ + + + +N ++ NK DL E
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
Query: 137 QRAVPTEDAKEFAQKEGL 154
+ A E +K GL
Sbjct: 116 AMS-----AAEITEKLGL 128
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + + S+ + T+G +T + +K+VK +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 68
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + YY G G + V D + R D + L + + + ++ +I++ NK DL +
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + + S+ + T+G +T + +K+VK +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 58
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + YY G G + V D + R D + L + + + ++ +I++ NK DL +
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + + S+ + T+G +T + +K+VK +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 57
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + YY G G + V D + R D + L + + + ++ +I++ NK DL +
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + E + + TIG +T +++K++ +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEE-LRSHADKNIVIILIGNKSDLEE 136
R R + Y++ G + V D + R+ + L++ L ++ V++L NK DL
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132
Query: 137 QRAVPTEDAKEFAQKEGL 154
A+ E K GL
Sbjct: 133 AMAIS-----EMTDKLGL 145
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
K+V++GD A GK+ +L ++ +F T+ E + + + V+ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDL--- 134
Y + Y + ++ + I S +++ +W+ E+ H + + IIL+G K DL
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 135 ---------EEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAF 171
E Q+ V +++ + A + G + E SA V F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + E + + TIG +T +++K++ +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSD 133
+ R + YY+ + V D + R D I EEL + +N ++++ NK D
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 134 LEEQRAVPTEDAKEFAQKEGL-------FFLETSALEATNVENAF 171
L + ++ E +K GL ++ +TS ATN + +
Sbjct: 130 LPQAMSIS-----EVTEKLGLQTIKNRKWYCQTSC--ATNGDGLY 167
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
+++++G A GK+ IL + E + + TIG +T ++ +++ +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
R + YY G + V D + R+ D L + + + K+ +I++ NK DL
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + E + + TIG +T +++K++ +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRR----QSFDHIPRWLEELRSHADKNIVIILIGNKSD 133
+ R + Y++ G + V D + R +S D + + L+E ++ V+++ NK D
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE---DELRDAVLLVFANKQD 141
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFLET 159
+ A+P E K GL L +
Sbjct: 142 MPN--AMP---VSELTDKLGLQHLRS 162
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 21/146 (14%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + E + + TIG +T +++K++ +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRR----QSFDHIPRWL--EELRSHADKNIVIILIGNK 131
+ R + Y++ G + V D + R ++ D + R L +ELR + V+++ NK
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-----DAVLLVFANK 130
Query: 132 SDLEEQRAVPTEDAKEFAQKEGLFFL 157
DL +A E K GL L
Sbjct: 131 QDLPN-----AMNAAEITDKLGLHSL 151
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + E + + TIG +T +++K++ +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + Y++ G + V D + R+ + L + + + ++ V+++ NK DL
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
Query: 137 QRAVPTEDAKEFAQKEGLFFL 157
+A E K GL L
Sbjct: 281 -----AMNAAEITDKLGLHSL 296
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + E + + TIG +T +++K++ +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + Y++ G + V D + R+ + L + + + ++ V+++ NK DL
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131
Query: 137 QRAVPTEDAKEFAQKEGLFFL 157
+A E K GL L
Sbjct: 132 -----AMNAAEITDKLGLHSL 147
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + E + + TIG +T +++K++ +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + Y++ G + V D + R+ + L + + + ++ V+++ NK DL
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132
Query: 137 QRAVPTEDAKEFAQKEGLFFL 157
+A E K GL L
Sbjct: 133 -----AMNAAEITDKLGLHSL 148
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + E + + TIG +T +++K++ +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + Y++ G + V D + R+ + L + + + ++ V+++ NK DL
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 137 QRAVPTEDAKEFAQKEGLFFL 157
+A E K GL L
Sbjct: 116 -----AMNAAEITDKLGLHSL 131
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
++ L+G GK+ + A +FS D T+G F R + +V +IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRK--VTKGNVTIKIWDIGGQP 78
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
R+R++ Y RG + + D + R+ + L L + I ++++GNK DL
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G GK+ IL +F+ NE + + TIG + +VI + + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVI--NNTRFLMWDIGGQES 78
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
R+ + YY ++V D + R+ L ++ +H D + +++ NK D++E
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 138 RAV 140
V
Sbjct: 139 MTV 141
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G GK+ IL +F+ NE + + TIG + +VI + + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVI--NNTRFLMWDIGGQES 77
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
R+ + YY ++V D + R+ L ++ +H D + +++ NK D++E
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 138 RAV 140
V
Sbjct: 138 MTV 140
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G GK+ +L + E + + TIG + +Q+ ++ +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVE----CVQYCNISFTVWDVGGQD 72
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
R R++ YY G + V D + R ++ + + + N ++ NK DL E
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPE 132
Query: 137 QRAVPTEDAKEFAQKEGL 154
+ A E +K GL
Sbjct: 133 AMS-----AAEITEKLGL 145
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 21/164 (12%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G GK+ IL R E + + TIG +T T +K++K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVT----YKNLKFQVWDLGGQT 57
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQ----SFDHIPRWLEELRSHADKNIVIILIGNKSD 133
R YY + V D R S + LEE + ++++ NK D
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQD 114
Query: 134 LEEQRAVPTEDAKEFA------QKEGLFFLETSALEATNVENAF 171
+ EQ P+E A +K +F +TSA + T ++ A
Sbjct: 115 M-EQAMTPSEMANALGLPALKDRKWQIF--KTSATKGTGLDEAM 155
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G GK+ IL +F + S T+G +T ++H+ K IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
R+ Y+ G + V D + RQ R L+ L +++ NK DL
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G A GK+ IL + E + + TIG +T +++K++ +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
+ R + Y++ G + V D + R+ + L + + + ++ V+++ NK DL
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 117
Query: 137 QRAVPTEDAKEFAQKEGLFFL 157
+A E K GL L
Sbjct: 118 -----AMNAAEITDKLGLHSL 133
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79
+ ++G GKS + +F F + + + + + H+ V ++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA---DKNIVIILIGNKSDLEE 136
R Y A ++VY + RQSFD +LE L HA ++I +L+GNK D+ +
Sbjct: 83 RNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 137 QRAVPTEDAKEFAQKEGLFFLETSA-LEATNVENAFMTVLTE 177
R V + A + G F E SA L+ +V++ F + E
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
++ L+G GK+ + A +F+ D T+G F R I +V ++WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQP 78
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE 136
R+R++ Y RG + + D + ++ + L L + I ++++GNK DL
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP- 137
Query: 137 QRAVPTEDAKEFAQKEGL 154
D KE +K L
Sbjct: 138 ----GALDEKELIEKMNL 151
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G GK+ IL +F + S T+G +T ++H+ K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
R+ Y+ G + V D + RQ R L+ L +++ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
++ L+G GK+ + A +F+ D T+G F R I +V ++WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQP 87
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK----NIVIILIGNKSD 133
R+R++ Y RG + + D + ++ + EL + DK I ++++GNK D
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGIPVLVLGNKRD 144
Query: 134 LEEQRAVPTEDAKEFAQKEGL 154
L D KE +K L
Sbjct: 145 LP-----GALDEKELIEKMNL 160
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G GK+ IL +F + S T+G +T ++H+ K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
R+ Y+ G + V D + RQ R L+ L +++ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G GK+ IL +F+ NE + + TIG + +VI + + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVI--NNTRFLMWDIGGQES 72
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
R+ + YY ++V D + R+ L ++ +H D + +++ NK D++E
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 138 RAVP 141
V
Sbjct: 133 MTVA 136
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G GK+ IL +F+ NE + + TIG + +VI + + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVI--NNTRFLMWDIGGQES 72
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQ 137
R+ + YY ++V D + R+ L ++ +H D + +++ NK D++E
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 138 RAVP 141
V
Sbjct: 133 MTVA 136
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSL--DSKATIGVEFQTRTLVIQHKSVK---AQIWDT 73
K+ ++G++ GK+ +L + + + S AT+G++ + + I+ K + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNK- 131
AG+E + + + + VYD+S+ Q+ D WL +++ A + V IL+G
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVGTHL 120
Query: 132 --SDLEEQRAVPTEDAKEFAQKEGL 154
SD ++++A ++ KE K G
Sbjct: 121 DVSDEKQRKACXSKITKELLNKRGF 145
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSL--DSKATIGVEFQTRTLVIQHKSVK---AQIWDT 73
K+ ++G++ GK+ +L + + + S AT+G++ + + I+ K + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNK- 131
AG+E + + + + VYD+S+ Q+ D WL +++ A + V IL+G
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVGTHL 122
Query: 132 --SDLEEQRAVPTEDAKEFAQKEGL 154
SD ++++A ++ KE K G
Sbjct: 123 DVSDEKQRKACXSKITKELLNKRGF 147
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
KV+++G GK+ IL +F NE + + TIG + I K+ +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNVEE----IVVKNTHFLMWDIGGQES 72
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE 135
R+ + YY +LV D R+ L + +H D + +++ NK D++
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMK 130
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 17 VFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
+ +++++G GK+ IL +F N +D+ T+G +T ++H+ K IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKF--NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGG 54
Query: 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
+ R+ Y+ G + V D + RQ R L+ L +++ NK DL
Sbjct: 55 LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 114
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G GK+ IL R E + +K TIG +T + +K++K +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET----LSYKNLKLNVWDLGGQT 73
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFD------HIPRWLEELRSHADKNIVIILIGNK 131
R YY + V D + + H+ EEL+ A +++ NK
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-----LLVFANK 128
Query: 132 SD 133
D
Sbjct: 129 QD 130
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 29 GKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR 88
GK+ IL +F + S T+G +T ++H+ K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDL 134
G + V D + RQ R L+ L +++ NK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
+++++G GK+ IL R E + + TIG +T + +K++K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGLT 59
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQ----SFDHIPRWLEELRSHADKNIVIILIGNKSD 133
R YY + V D R S + LEE + ++++ NK D
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQD 116
Query: 134 LEEQRAVPTEDAKEFAQKEGLFFL--------ETSALEATNVENAF 171
+E+ + E A GL L +TSA + T ++ A
Sbjct: 117 MEQAMT-----SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 157
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 20 VVLIGDSAVGKSQILARF-ARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
V+ +G GK+ I+ + N S + TIG + + S+ ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEK----FKSSSLSFTVFDMSGQGR 79
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLE 135
YR + YY+ + V D S R L+ L +H D + I I+ NK DL
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 136 E 136
+
Sbjct: 140 D 140
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQ 69
P+Q++ +++L+G GK+ +L + A + S T G ++ +Q + K
Sbjct: 14 PDQEV----RILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKS----VQSQGFKLN 64
Query: 70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILI- 128
+WD GQ + R +Y+ + V D + R+ F+ + L EL + V +LI
Sbjct: 65 VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 124
Query: 129 GNKSDL 134
NK DL
Sbjct: 125 ANKQDL 130
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQ 69
P+Q++ +++L+G GK+ +L + A + S T G ++ +Q + K
Sbjct: 13 PDQEV----RILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKS----VQSQGFKLN 63
Query: 70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILI- 128
+WD GQ + R +Y+ + V D + R+ F+ + L EL + V +LI
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123
Query: 129 GNKSDL 134
NK DL
Sbjct: 124 ANKQDL 129
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 20/128 (15%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKA--------- 68
KV LIGD GK+ +L + F T G+ T+ Q ++K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTK----QAPNIKGLENDDELKE 97
Query: 69 ---QIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVI 125
WD GQE A + + ML+ D SR S H WL + + K+ VI
Sbjct: 98 CLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDSNKHY--WLRHIEKYGGKSPVI 154
Query: 126 ILIGNKSD 133
+++ NK D
Sbjct: 155 VVM-NKID 161
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
+++L+G GK+ +L + A + S T G ++ +Q + K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKS----VQSQGFKLNVWDIGGQRK 60
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILI-GNKSDL 134
R +Y+ + V D + R+ F+ + L EL + V +LI NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
+++++G GK+ IL R E + + TIG +T + +K++K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGLTS 63
Query: 79 YRAVTSAYYRGAVGAMLVYDISRR 102
R YY + V D R
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDR 87
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78
+++L+G GK+ +L + A + S T G ++ +Q + K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKS----VQSQGFKLNVWDIGGLRK 60
Query: 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILI-GNKSDL 134
R +Y+ + V D + R+ F+ + L EL + V +LI NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 13/178 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
++ ++GD+ GKS ++ RF + + K E + +++ ++ I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRW---LEELRSHADKNIVIILIGNKSDL 134
A + + A + V+ + SF + R L LR + + L+G + +
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 135 EEQRAVPTEDAKE---FAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTA 189
DA+ A + + ET A NV+ F V ++ + ++ L A
Sbjct: 121 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74
D +V+++G GK+ IL R L T +Q+K++ ++WD
Sbjct: 20 DRKIRVLMLGLDNAGKTSILYRL-----HLGDVVTTVPTVGVNLETLQYKNISFEVWDLG 74
Query: 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN----IVIILIGN 130
GQ R Y+ + V D + R D + EL + D++ ++++ N
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFAN 131
Query: 131 KSDLEE 136
K DL +
Sbjct: 132 KQDLPD 137
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 13/178 (7%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77
++ ++GD+ GKS ++ RF + + K E + +++ ++ I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRW---LEELRSHADKNIVIILIGNKSDL 134
A + + A + V+ + SF + R L LR + + L+G + +
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 135 EEQRAVPTEDAKEFAQKEGL---FFLETSALEATNVENAFMTVLTEIFNIVNKKNLTA 189
DA+ A + + ET A NV+ F V ++ + ++ L A
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 92 GAMLVYDISR--RQSFDHIPRWLEELRSH---ADKNIVIILIGNKSDLEEQRAVPTEDAK 146
G +L D+SR ++FD +++ L + K IV++L K D +R + DA
Sbjct: 165 GFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVL--TKCDEGVERYI--RDAH 220
Query: 147 EFA-QKEGLFFLETSALEATNVENAFMTVLTEI 178
FA K+ L +ETSA NV+ AF T++ I
Sbjct: 221 TFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|4B6G|A Chain A, The Crystal Structure Of The Neisserial Esterase D.
pdb|4B6G|B Chain B, The Crystal Structure Of The Neisserial Esterase D
Length = 283
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 115 LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174
+ +A ++ VI++ + S EQ VP +DA + Q G + T A N + + +
Sbjct: 73 FQRYAAEHQVIVVAPDTSPRGEQ--VPNDDAYDLGQSAGFYLNATEQPWAANYQ-MYDYI 129
Query: 175 LTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILV 208
L E+ ++ K T G+ G+ S+ G LV
Sbjct: 130 LNELPRLIEKHFPTNGKRSIMGH--SMGGHGALV 161
>pdb|2KPO|A Chain A, Solution Nmr Structure Of De Novo Designed Rossmann 2x2
Fold Protein, Northeast Structural Genomics Consortium
Target Or16
pdb|2LV8|A Chain A, Solution Nmr Structure De Novo Designed Rossmann 2x2 Fold
Protein, Northeast Structural Genomics Consortium (nesg)
Target Or16
Length = 110
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 106 DHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK 151
D + ++LEE R + V+IL+ N +L++ AKE AQK
Sbjct: 36 DELKKYLEEFRKESQNIKVLILVSNDEELDK--------AKELAQK 73
>pdb|3V9H|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
Length = 566
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 103 QSFDHIPRWLEELRSHADKNIVIILIGNKSD-----LEEQRAVPTEDAKEFAQKEGLF 155
+SF I +WLE RS + IL G K D E V ++D +E KE +F
Sbjct: 398 KSFARIKKWLEHARSSPS---LTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIF 452
>pdb|3V9G|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
Length = 566
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 103 QSFDHIPRWLEELRSHADKNIVIILIGNKSD-----LEEQRAVPTEDAKEFAQKEGLF 155
+SF I +WLE RS + IL G K D E V ++D +E KE +F
Sbjct: 398 KSFARIKKWLEHARSSPS---LTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIF 452
>pdb|3V9I|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
Length = 566
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 103 QSFDHIPRWLEELRSHADKNIVIILIGNKSD-----LEEQRAVPTEDAKEFAQKEGLF 155
+SF I +WLE RS + IL G K D E V ++D +E KE +F
Sbjct: 398 KSFARIKKWLEHARSSPS---LTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKEEIF 452
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 16 YVFKVVLIGDSAVGKSQILARFARNEFSLD--SKATIGVEFQTRTLVIQHKSVKAQI 70
+ F ++ +G++ +GKS ++ +F + + GV+ Q+ T +Q +V+ ++
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 40/171 (23%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSL--DSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75
KV ++G VGKS +L +++++ ++ D T +++ +V + Q+ DTAG
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV---GGIPVQVLDTAG 281
Query: 76 --------------QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK 121
+ R A T+ + A + ++ ++ + K
Sbjct: 282 IRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV------------K 329
Query: 122 NIVIILIGNKSDLEEQRAVPTEDAKE---------FAQKEGLFFLETSALE 163
+ +IL+ NK DL E++ + + + E AQK+G+ LET+ LE
Sbjct: 330 HRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILE 380
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 18 FKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76
+VV+ G GK+ I+ + + S AT+G +T + V ++D G
Sbjct: 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGA 73
Query: 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD 120
+++R + YY + V D S + ++ + H D
Sbjct: 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHED 117
>pdb|1KQF|C Chain C, Formate Dehydrogenase N From E. Coli
pdb|1KQG|C Chain C, Formate Dehydrogenase N From E. Coli
Length = 217
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEEL 115
+ +G++ M+ +SRR + H PRW E+
Sbjct: 175 WVKGSIKGMIEGKVSRRWAKKHHPRWYREI 204
>pdb|3GF5|A Chain A, Crystal Structure Of The P21 R1-R7 N-Terminal Domain Of
Murine Mvp
pdb|3GF5|B Chain B, Crystal Structure Of The P21 R1-R7 N-Terminal Domain Of
Murine Mvp
pdb|3GNF|B Chain B, P1 Crystal Structure Of The N-Terminal R1-R7 Of Murine Mvp
pdb|3GNG|A Chain A, P21b Crystal Structure Of R1-R7 Of Murine Mvp
Length = 387
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 146 KEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKK 205
K + E FFL+ +++ + VL+E ++ K EG+G A +G +
Sbjct: 303 KRVVKGEKSFFLQPGERLERGIQDVY--VLSEQQGLLLKALQPLEEGEGEERVAHQAGDR 360
Query: 206 ILVPGPAQEIPA 217
L+ GP + +P+
Sbjct: 361 WLIRGPLEYVPS 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,360,347
Number of Sequences: 62578
Number of extensions: 238068
Number of successful extensions: 1318
Number of sequences better than 100.0: 352
Number of HSP's better than 100.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 355
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)