Query 027292
Match_columns 225
No_of_seqs 149 out of 1877
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 7.5E-42 1.6E-46 249.4 22.5 177 11-187 3-180 (205)
2 KOG0087 GTPase Rab11/YPT3, sma 100.0 2E-40 4.3E-45 244.3 21.9 216 8-224 5-222 (222)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 1E-39 2.2E-44 237.4 18.9 172 15-186 3-174 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.8E-39 3.9E-44 236.2 20.2 167 17-183 22-189 (221)
5 KOG0078 GTP-binding protein SE 100.0 6.6E-39 1.4E-43 237.2 23.5 173 13-185 8-180 (207)
6 KOG0080 GTPase Rab18, small G 100.0 1.2E-38 2.6E-43 224.7 19.7 170 12-181 6-176 (209)
7 PLN03110 Rab GTPase; Provision 100.0 1.3E-37 2.8E-42 241.3 27.5 209 13-225 8-216 (216)
8 KOG0098 GTPase Rab2, small G p 100.0 6.1E-38 1.3E-42 226.5 21.5 175 14-188 3-177 (216)
9 cd04120 Rab12 Rab12 subfamily. 100.0 2.2E-36 4.9E-41 231.2 25.3 166 18-183 1-167 (202)
10 KOG0086 GTPase Rab4, small G p 100.0 3.6E-37 7.8E-42 215.6 17.8 213 10-222 2-214 (214)
11 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3E-36 6.4E-41 231.4 24.2 195 18-223 1-201 (201)
12 cd04121 Rab40 Rab40 subfamily. 100.0 5.8E-36 1.3E-40 226.9 25.0 169 14-183 3-171 (189)
13 KOG0394 Ras-related GTPase [Ge 100.0 6.5E-37 1.4E-41 220.7 18.0 172 13-184 5-183 (210)
14 KOG0093 GTPase Rab3, small G p 100.0 1.7E-36 3.8E-41 210.7 17.6 182 4-185 8-189 (193)
15 cd04110 Rab35 Rab35 subfamily. 100.0 4.7E-35 1E-39 224.4 25.7 197 14-223 3-199 (199)
16 KOG0095 GTPase Rab30, small G 100.0 2E-36 4.2E-41 211.2 15.9 208 13-224 3-210 (213)
17 cd04111 Rab39 Rab39 subfamily. 100.0 1.2E-34 2.6E-39 223.8 26.3 207 17-223 2-211 (211)
18 cd04144 Ras2 Ras2 subfamily. 100.0 2.9E-35 6.4E-40 224.0 22.4 185 19-223 1-188 (190)
19 KOG0079 GTP-binding protein H- 100.0 2.8E-36 6E-41 210.0 14.9 169 14-183 5-173 (198)
20 cd04126 Rab20 Rab20 subfamily. 100.0 6.1E-35 1.3E-39 225.7 23.3 187 18-223 1-220 (220)
21 cd04125 RabA_like RabA-like su 100.0 2.3E-34 5E-39 218.7 24.9 168 18-185 1-168 (188)
22 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.7E-34 1.2E-38 221.6 25.9 168 13-182 9-191 (232)
23 cd04122 Rab14 Rab14 subfamily. 100.0 2.7E-34 5.8E-39 214.1 23.0 164 17-180 2-165 (166)
24 cd01867 Rab8_Rab10_Rab13_like 100.0 3.7E-34 8.1E-39 213.5 22.9 166 15-180 1-166 (167)
25 KOG0088 GTPase Rab21, small G 100.0 2.1E-35 4.5E-40 207.9 14.9 209 12-224 8-217 (218)
26 cd04109 Rab28 Rab28 subfamily. 100.0 4.6E-34 1E-38 221.4 23.6 164 18-181 1-168 (215)
27 cd04112 Rab26 Rab26 subfamily. 100.0 5.5E-34 1.2E-38 217.2 23.6 164 18-181 1-165 (191)
28 KOG0091 GTPase Rab39, small G 100.0 9.8E-35 2.1E-39 205.5 17.8 179 14-192 5-186 (213)
29 PLN03108 Rab family protein; P 100.0 2.6E-33 5.6E-38 216.4 27.0 170 15-184 4-173 (210)
30 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.5E-34 9.7E-39 215.5 22.2 164 14-179 2-180 (182)
31 cd04133 Rop_like Rop subfamily 100.0 4.5E-34 9.7E-39 214.3 20.7 161 17-179 1-173 (176)
32 PTZ00369 Ras-like protein; Pro 100.0 7.1E-34 1.5E-38 216.2 22.1 165 16-181 4-169 (189)
33 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.8E-33 6E-38 216.7 24.6 164 18-183 2-180 (222)
34 cd01865 Rab3 Rab3 subfamily. 100.0 2.6E-33 5.7E-38 208.6 23.2 163 18-180 2-164 (165)
35 cd04117 Rab15 Rab15 subfamily. 100.0 1.9E-33 4.2E-38 208.5 22.0 160 18-177 1-160 (161)
36 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.1E-33 4.6E-38 210.4 22.2 163 17-180 2-165 (172)
37 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.6E-33 7.8E-38 207.9 22.8 163 17-179 2-164 (166)
38 cd04127 Rab27A Rab27a subfamil 100.0 3.3E-33 7.2E-38 210.7 22.9 167 15-181 2-179 (180)
39 PLN03118 Rab family protein; P 100.0 1.2E-32 2.7E-37 212.9 26.4 201 12-224 9-211 (211)
40 cd04131 Rnd Rnd subfamily. Th 100.0 2.1E-33 4.5E-38 211.4 21.4 160 18-179 2-176 (178)
41 PF00071 Ras: Ras family; Int 100.0 4.2E-33 9.1E-38 206.6 22.1 161 19-179 1-161 (162)
42 cd01866 Rab2 Rab2 subfamily. 100.0 7.1E-33 1.5E-37 206.8 23.4 166 15-180 2-167 (168)
43 cd01875 RhoG RhoG subfamily. 100.0 4.9E-33 1.1E-37 211.8 22.3 162 17-180 3-178 (191)
44 cd04119 RJL RJL (RabJ-Like) su 100.0 5.8E-33 1.3E-37 206.7 22.1 162 18-179 1-167 (168)
45 cd01868 Rab11_like Rab11-like. 100.0 8.7E-33 1.9E-37 205.6 22.6 163 16-178 2-164 (165)
46 cd01864 Rab19 Rab19 subfamily. 100.0 1.2E-32 2.5E-37 205.0 22.5 163 15-177 1-164 (165)
47 cd01874 Cdc42 Cdc42 subfamily. 100.0 6.8E-33 1.5E-37 208.2 20.7 160 17-178 1-174 (175)
48 cd04118 Rab24 Rab24 subfamily. 100.0 3.2E-32 6.9E-37 207.7 24.6 164 18-182 1-169 (193)
49 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.1E-32 2.5E-37 208.1 21.6 163 18-181 1-168 (182)
50 PLN03071 GTP-binding nuclear p 100.0 1.5E-32 3.2E-37 213.3 22.4 164 15-181 11-174 (219)
51 cd04132 Rho4_like Rho4-like su 100.0 2.1E-32 4.6E-37 207.7 22.5 166 18-185 1-173 (187)
52 cd04113 Rab4 Rab4 subfamily. 100.0 3E-32 6.5E-37 201.9 21.7 160 18-177 1-160 (161)
53 KOG0097 GTPase Rab14, small G 100.0 4E-32 8.7E-37 188.1 20.4 183 12-194 6-188 (215)
54 cd04136 Rap_like Rap-like subf 100.0 1.8E-32 3.9E-37 203.3 20.2 160 18-178 2-162 (163)
55 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 9.2E-32 2E-36 201.2 22.8 163 19-181 2-167 (170)
56 cd04106 Rab23_lke Rab23-like s 100.0 8E-32 1.7E-36 199.7 21.7 159 18-177 1-161 (162)
57 cd04175 Rap1 Rap1 subgroup. T 100.0 4.8E-32 1.1E-36 201.4 20.5 161 18-179 2-163 (164)
58 smart00175 RAB Rab subfamily o 100.0 1.2E-31 2.7E-36 198.9 22.6 163 18-180 1-163 (164)
59 cd04116 Rab9 Rab9 subfamily. 100.0 1.3E-31 2.9E-36 200.2 22.7 163 14-177 2-169 (170)
60 cd00877 Ran Ran (Ras-related n 100.0 9E-32 2E-36 200.5 21.1 161 18-181 1-161 (166)
61 cd04176 Rap2 Rap2 subgroup. T 100.0 9.4E-32 2E-36 199.6 20.6 161 17-178 1-162 (163)
62 cd04124 RabL2 RabL2 subfamily. 100.0 1.5E-31 3.2E-36 198.4 21.6 160 18-181 1-160 (161)
63 cd04134 Rho3 Rho3 subfamily. 100.0 1.3E-31 2.9E-36 203.6 21.8 161 18-180 1-175 (189)
64 cd04140 ARHI_like ARHI subfami 100.0 1.5E-31 3.2E-36 199.1 21.0 159 18-177 2-163 (165)
65 cd01871 Rac1_like Rac1-like su 100.0 1.3E-31 2.8E-36 201.1 20.8 158 18-177 2-173 (174)
66 cd01860 Rab5_related Rab5-rela 100.0 3.9E-31 8.5E-36 196.2 22.7 162 17-178 1-162 (163)
67 cd01861 Rab6 Rab6 subfamily. 100.0 3.1E-31 6.7E-36 196.3 21.9 160 18-177 1-160 (161)
68 smart00173 RAS Ras subfamily o 100.0 2.2E-31 4.8E-36 197.8 21.0 161 18-179 1-162 (164)
69 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.5E-31 9.8E-36 197.4 22.0 162 17-178 2-168 (170)
70 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4.3E-31 9.4E-36 195.4 21.5 160 17-178 1-161 (162)
71 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.2E-31 9.1E-36 196.1 21.5 161 17-178 2-163 (164)
72 smart00176 RAN Ran (Ras-relate 100.0 4.7E-31 1E-35 201.6 21.3 156 23-181 1-156 (200)
73 cd04142 RRP22 RRP22 subfamily. 100.0 3.5E-31 7.5E-36 202.4 20.2 164 18-181 1-176 (198)
74 KOG0081 GTPase Rab27, small G 100.0 3.1E-33 6.8E-38 197.0 7.7 175 14-188 6-190 (219)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.3E-30 2.8E-35 193.7 21.8 160 18-178 1-163 (164)
76 cd04123 Rab21 Rab21 subfamily. 100.0 2E-30 4.4E-35 191.8 22.2 161 18-178 1-161 (162)
77 cd01862 Rab7 Rab7 subfamily. 100.0 3.7E-30 8E-35 192.5 22.6 165 18-182 1-170 (172)
78 smart00174 RHO Rho (Ras homolo 100.0 1.2E-30 2.6E-35 195.6 19.3 159 20-180 1-173 (174)
79 cd01873 RhoBTB RhoBTB subfamil 100.0 1.7E-30 3.6E-35 198.1 20.1 158 17-177 2-194 (195)
80 cd01863 Rab18 Rab18 subfamily. 100.0 5.3E-30 1.1E-34 189.8 21.7 159 18-177 1-160 (161)
81 cd04114 Rab30 Rab30 subfamily. 100.0 1E-29 2.2E-34 189.7 22.9 164 15-178 5-168 (169)
82 cd04143 Rhes_like Rhes_like su 100.0 4.1E-30 8.8E-35 202.4 21.5 160 18-178 1-170 (247)
83 cd04148 RGK RGK subfamily. Th 100.0 7.6E-30 1.7E-34 198.3 22.6 167 18-186 1-170 (221)
84 cd01892 Miro2 Miro2 subfamily. 100.0 1.5E-30 3.3E-35 194.4 18.0 163 15-179 2-166 (169)
85 cd04177 RSR1 RSR1 subgroup. R 100.0 6.4E-30 1.4E-34 190.8 21.3 162 18-180 2-165 (168)
86 cd04146 RERG_RasL11_like RERG/ 100.0 3E-30 6.6E-35 192.0 18.8 160 19-179 1-164 (165)
87 cd00154 Rab Rab family. Rab G 100.0 1.4E-29 3E-34 186.2 21.3 159 18-176 1-159 (159)
88 cd04103 Centaurin_gamma Centau 100.0 6.6E-30 1.4E-34 188.8 19.4 153 18-177 1-157 (158)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 9.8E-30 2.1E-34 190.7 20.3 157 18-176 1-171 (173)
90 cd04135 Tc10 TC10 subfamily. 100.0 1.3E-29 2.7E-34 190.1 20.0 159 18-178 1-173 (174)
91 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.8E-31 3.9E-36 183.0 7.8 161 21-181 1-162 (192)
92 cd04139 RalA_RalB RalA/RalB su 100.0 8.3E-29 1.8E-33 183.6 21.6 162 18-180 1-163 (164)
93 KOG4252 GTP-binding protein [S 100.0 1.7E-31 3.8E-36 191.8 6.3 179 6-185 9-187 (246)
94 cd00876 Ras Ras family. The R 100.0 9E-29 2E-33 182.6 20.5 158 19-177 1-159 (160)
95 cd04129 Rho2 Rho2 subfamily. 100.0 1.7E-28 3.6E-33 186.3 21.5 162 18-181 2-175 (187)
96 cd01870 RhoA_like RhoA-like su 100.0 2.3E-28 5E-33 183.4 20.5 159 18-178 2-174 (175)
97 KOG0395 Ras-related GTPase [Ge 100.0 1.3E-28 2.8E-33 186.9 19.1 167 16-183 2-169 (196)
98 cd04147 Ras_dva Ras-dva subfam 100.0 2.4E-28 5.2E-33 187.1 19.9 160 19-179 1-163 (198)
99 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.5E-28 7.6E-33 183.9 20.2 165 17-184 3-175 (183)
100 cd04137 RheB Rheb (Ras Homolog 100.0 6.9E-28 1.5E-32 181.7 21.6 163 18-181 2-165 (180)
101 cd04149 Arf6 Arf6 subfamily. 100.0 1.4E-28 3.1E-33 183.5 17.6 154 16-176 8-167 (168)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4.1E-29 8.9E-34 185.8 13.3 152 20-176 2-163 (164)
103 PLN00223 ADP-ribosylation fact 100.0 5.8E-28 1.3E-32 182.3 19.2 159 15-180 15-179 (181)
104 cd04158 ARD1 ARD1 subfamily. 100.0 3.6E-28 7.7E-33 181.6 17.7 156 19-181 1-163 (169)
105 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.3E-28 7.1E-33 180.0 17.1 152 18-176 1-158 (159)
106 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.7E-27 3.6E-32 182.0 21.0 148 18-165 1-176 (202)
107 PTZ00132 GTP-binding nuclear p 100.0 4E-27 8.7E-32 182.5 23.2 166 13-181 5-170 (215)
108 cd01893 Miro1 Miro1 subfamily. 100.0 1E-27 2.2E-32 178.6 19.1 160 18-180 1-165 (166)
109 smart00177 ARF ARF-like small 100.0 1.4E-27 3E-32 179.4 19.0 156 16-178 12-173 (175)
110 PTZ00133 ADP-ribosylation fact 100.0 1.8E-27 3.9E-32 179.8 19.3 160 16-182 16-181 (182)
111 cd00157 Rho Rho (Ras homology) 100.0 3.3E-27 7.1E-32 176.3 19.9 157 18-176 1-170 (171)
112 cd04154 Arl2 Arl2 subfamily. 100.0 1.7E-27 3.6E-32 178.6 18.0 157 13-176 10-172 (173)
113 KOG0393 Ras-related small GTPa 100.0 1.2E-28 2.7E-33 183.4 11.6 166 15-182 2-182 (198)
114 cd04157 Arl6 Arl6 subfamily. 100.0 7.2E-27 1.6E-31 173.0 16.6 152 19-176 1-161 (162)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.6E-26 5.6E-31 172.4 18.0 154 16-176 14-173 (174)
116 PLN00023 GTP-binding protein; 99.9 1.4E-25 3.1E-30 179.5 23.2 142 13-154 17-189 (334)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.8E-26 3.8E-31 170.7 15.7 152 19-176 1-159 (160)
118 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3E-26 6.4E-31 170.6 17.0 152 19-176 1-166 (167)
119 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.1E-26 2.4E-31 173.2 14.5 151 19-176 1-166 (167)
120 cd00879 Sar1 Sar1 subfamily. 99.9 8E-26 1.7E-30 171.9 17.7 155 16-177 18-189 (190)
121 PTZ00099 rab6; Provisional 99.9 2.3E-25 5E-30 167.1 19.5 141 40-180 3-143 (176)
122 cd04151 Arl1 Arl1 subfamily. 99.9 1E-25 2.3E-30 166.4 17.1 151 19-176 1-157 (158)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 5.3E-26 1.1E-30 167.8 15.3 151 19-176 1-157 (158)
124 smart00178 SAR Sar1p-like memb 99.9 5.2E-25 1.1E-29 166.7 17.7 156 15-177 15-183 (184)
125 PF00025 Arf: ADP-ribosylation 99.9 4.3E-25 9.4E-30 165.7 17.0 158 14-178 11-175 (175)
126 cd04159 Arl10_like Arl10-like 99.9 9.2E-25 2E-29 160.5 16.0 151 20-176 2-158 (159)
127 cd01897 NOG NOG1 is a nucleola 99.9 1.1E-24 2.5E-29 162.2 16.1 157 18-179 1-168 (168)
128 cd01890 LepA LepA subfamily. 99.9 1.8E-24 3.8E-29 162.9 17.1 154 19-178 2-176 (179)
129 TIGR00231 small_GTP small GTP- 99.9 5.4E-24 1.2E-28 156.0 18.7 157 17-174 1-159 (161)
130 cd01898 Obg Obg subfamily. Th 99.9 1.5E-24 3.3E-29 161.8 15.2 157 19-177 2-169 (170)
131 cd01878 HflX HflX subfamily. 99.9 3.2E-24 6.9E-29 165.0 15.8 157 14-177 38-203 (204)
132 PRK12299 obgE GTPase CgtA; Rev 99.9 9E-24 1.9E-28 172.7 18.7 164 17-181 158-330 (335)
133 cd04155 Arl3 Arl3 subfamily. 99.9 1.8E-23 3.9E-28 156.5 18.3 152 15-176 12-172 (173)
134 cd04171 SelB SelB subfamily. 99.9 8E-24 1.7E-28 156.8 16.3 152 18-176 1-163 (164)
135 COG1100 GTPase SAR1 and relate 99.9 5.6E-23 1.2E-27 159.6 21.0 173 17-189 5-195 (219)
136 KOG0073 GTP-binding ADP-ribosy 99.9 4.5E-23 9.8E-28 146.4 18.1 161 14-181 13-180 (185)
137 TIGR02528 EutP ethanolamine ut 99.9 6.5E-24 1.4E-28 154.0 14.2 134 19-175 2-141 (142)
138 PRK04213 GTP-binding protein; 99.9 5.4E-24 1.2E-28 163.3 12.4 157 11-180 3-193 (201)
139 cd00882 Ras_like_GTPase Ras-li 99.9 1.5E-22 3.2E-27 147.0 18.1 153 22-175 1-156 (157)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.2E-23 1.4E-27 152.7 16.2 157 19-179 2-166 (168)
141 cd01879 FeoB Ferrous iron tran 99.9 7.6E-23 1.6E-27 150.7 15.9 147 22-177 1-155 (158)
142 cd01891 TypA_BipA TypA (tyrosi 99.9 4.8E-23 1E-27 157.2 14.0 149 18-170 3-173 (194)
143 PF02421 FeoB_N: Ferrous iron 99.9 3.5E-23 7.5E-28 150.5 11.6 148 18-174 1-156 (156)
144 TIGR02729 Obg_CgtA Obg family 99.9 2.6E-22 5.6E-27 164.0 17.8 160 17-178 157-328 (329)
145 TIGR03156 GTP_HflX GTP-binding 99.9 2.9E-22 6.3E-27 165.0 17.9 155 15-177 187-350 (351)
146 KOG0070 GTP-binding ADP-ribosy 99.9 1.9E-22 4.1E-27 146.8 13.6 161 14-181 14-180 (181)
147 TIGR00436 era GTP-binding prot 99.9 6.7E-22 1.5E-26 158.2 16.4 153 19-178 2-163 (270)
148 PF08477 Miro: Miro-like prote 99.9 4.4E-22 9.5E-27 140.0 12.9 114 19-133 1-119 (119)
149 cd01881 Obg_like The Obg-like 99.9 4.2E-22 9.1E-27 149.2 12.8 155 22-177 1-175 (176)
150 KOG1673 Ras GTPases [General f 99.9 5.2E-22 1.1E-26 139.9 11.2 167 14-181 17-188 (205)
151 PRK15494 era GTPase Era; Provi 99.9 2E-21 4.4E-26 159.7 16.6 154 15-178 50-215 (339)
152 KOG3883 Ras family small GTPas 99.9 4.6E-21 9.9E-26 134.8 15.8 170 15-184 7-180 (198)
153 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2E-21 4.4E-26 142.7 14.7 146 18-178 2-156 (157)
154 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.7E-21 1E-25 162.1 18.6 156 14-183 200-364 (442)
155 cd00881 GTP_translation_factor 99.9 3.3E-21 7.2E-26 145.9 15.7 156 19-178 1-186 (189)
156 cd01889 SelB_euk SelB subfamil 99.9 1.8E-21 4E-26 148.2 13.8 158 18-179 1-186 (192)
157 TIGR01393 lepA GTP-binding pro 99.9 7.4E-21 1.6E-25 166.2 18.7 156 17-178 3-179 (595)
158 PRK03003 GTP-binding protein D 99.9 4.5E-21 9.8E-26 164.5 16.9 162 15-182 209-385 (472)
159 cd01894 EngA1 EngA1 subfamily. 99.9 2E-21 4.4E-26 142.7 12.7 146 21-177 1-156 (157)
160 TIGR00487 IF-2 translation ini 99.9 8E-21 1.7E-25 165.3 18.5 155 14-176 84-247 (587)
161 PRK15467 ethanolamine utilizat 99.9 3.7E-21 8.1E-26 142.0 13.9 140 19-181 3-149 (158)
162 PRK12297 obgE GTPase CgtA; Rev 99.9 2.1E-20 4.6E-25 156.6 19.9 159 18-181 159-329 (424)
163 PRK11058 GTPase HflX; Provisio 99.9 8.9E-21 1.9E-25 159.6 17.1 159 17-181 197-364 (426)
164 KOG0075 GTP-binding ADP-ribosy 99.9 2E-21 4.2E-26 135.7 10.6 156 17-178 20-181 (186)
165 cd01888 eIF2_gamma eIF2-gamma 99.9 5.9E-21 1.3E-25 146.6 14.4 159 18-178 1-198 (203)
166 PRK03003 GTP-binding protein D 99.9 7.1E-21 1.5E-25 163.3 16.2 154 16-180 37-200 (472)
167 PRK05291 trmE tRNA modificatio 99.9 7.4E-21 1.6E-25 161.7 16.0 149 16-180 214-371 (449)
168 TIGR03594 GTPase_EngA ribosome 99.9 1.2E-20 2.6E-25 160.6 17.1 161 14-181 169-346 (429)
169 PRK12296 obgE GTPase CgtA; Rev 99.9 2.3E-20 4.9E-25 158.3 18.3 164 17-183 159-344 (500)
170 cd04163 Era Era subfamily. Er 99.9 3.8E-20 8.3E-25 136.9 16.6 156 17-177 3-167 (168)
171 TIGR00475 selB selenocysteine- 99.9 2.2E-20 4.8E-25 163.1 17.4 155 18-181 1-168 (581)
172 CHL00189 infB translation init 99.9 2.3E-20 4.9E-25 164.9 17.4 158 14-178 241-409 (742)
173 PRK00454 engB GTP-binding prot 99.9 4.4E-20 9.5E-25 140.9 16.9 157 13-178 20-193 (196)
174 TIGR03598 GTPase_YsxC ribosome 99.9 2.4E-20 5.1E-25 140.6 14.4 150 12-168 13-179 (179)
175 PRK05306 infB translation init 99.9 4.5E-20 9.8E-25 164.3 18.4 156 13-177 286-450 (787)
176 cd01895 EngA2 EngA2 subfamily. 99.9 8.8E-20 1.9E-24 136.0 16.8 155 17-177 2-173 (174)
177 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 4.9E-21 1.1E-25 139.3 9.4 164 15-181 8-171 (216)
178 PRK00089 era GTPase Era; Revie 99.8 6.8E-20 1.5E-24 148.4 16.6 157 17-178 5-170 (292)
179 PRK12298 obgE GTPase CgtA; Rev 99.8 1.2E-19 2.7E-24 151.1 17.8 163 17-181 159-335 (390)
180 cd04105 SR_beta Signal recogni 99.8 1.8E-19 3.9E-24 138.3 17.4 117 19-136 2-123 (203)
181 PF00009 GTP_EFTU: Elongation 99.8 1.5E-20 3.2E-25 142.8 10.4 159 16-178 2-186 (188)
182 TIGR00437 feoB ferrous iron tr 99.8 7.5E-20 1.6E-24 159.9 16.0 146 24-178 1-154 (591)
183 PRK00093 GTP-binding protein D 99.8 2.3E-19 4.9E-24 153.0 17.4 146 18-176 2-159 (435)
184 KOG0071 GTP-binding ADP-ribosy 99.8 3.1E-19 6.8E-24 123.8 14.5 156 16-178 16-177 (180)
185 PRK05433 GTP-binding protein L 99.8 2.4E-19 5.1E-24 156.9 17.3 159 15-179 5-184 (600)
186 COG1159 Era GTPase [General fu 99.8 2.3E-19 4.9E-24 140.5 14.6 158 16-178 5-171 (298)
187 cd00880 Era_like Era (E. coli 99.8 1.6E-19 3.4E-24 132.3 12.9 151 22-177 1-162 (163)
188 TIGR03594 GTPase_EngA ribosome 99.8 3E-19 6.6E-24 152.0 16.1 149 19-178 1-159 (429)
189 PRK09554 feoB ferrous iron tra 99.8 7.3E-19 1.6E-23 157.2 18.3 153 17-178 3-167 (772)
190 PRK09518 bifunctional cytidyla 99.8 7.5E-19 1.6E-23 157.4 18.5 165 6-180 264-437 (712)
191 PRK00093 GTP-binding protein D 99.8 9.9E-19 2.1E-23 149.0 17.4 160 15-181 171-346 (435)
192 PF10662 PduV-EutP: Ethanolami 99.8 8.5E-19 1.8E-23 124.8 13.3 135 19-175 3-142 (143)
193 KOG4423 GTP-binding protein-li 99.8 2.1E-21 4.5E-26 140.8 -0.7 170 13-182 21-197 (229)
194 PRK12317 elongation factor 1-a 99.8 5.2E-19 1.1E-23 150.1 13.6 157 14-172 3-198 (425)
195 PRK09518 bifunctional cytidyla 99.8 3.2E-18 7E-23 153.3 19.3 158 16-181 449-623 (712)
196 TIGR01394 TypA_BipA GTP-bindin 99.8 9.2E-19 2E-23 152.8 15.2 156 19-178 3-190 (594)
197 TIGR00491 aIF-2 translation in 99.8 1.9E-18 4.1E-23 150.3 16.9 157 17-180 4-217 (590)
198 KOG0076 GTP-binding ADP-ribosy 99.8 4.5E-19 9.8E-24 127.4 9.9 160 16-181 16-189 (197)
199 TIGR00483 EF-1_alpha translati 99.8 1.4E-18 3.1E-23 147.4 14.6 157 14-171 4-199 (426)
200 cd01876 YihA_EngB The YihA (En 99.8 3.3E-18 7.2E-23 126.8 14.5 150 19-177 1-169 (170)
201 COG2229 Predicted GTPase [Gene 99.8 1.6E-17 3.4E-22 121.0 17.4 159 13-177 6-176 (187)
202 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.1E-18 2.4E-23 134.5 12.0 148 19-169 1-184 (208)
203 PRK10218 GTP-binding protein; 99.8 7.9E-18 1.7E-22 146.9 18.0 159 16-178 4-194 (607)
204 cd01884 EF_Tu EF-Tu subfamily. 99.8 9.2E-18 2E-22 127.8 15.3 148 17-168 2-172 (195)
205 COG1160 Predicted GTPases [Gen 99.8 3.6E-18 7.8E-23 140.7 13.6 148 18-178 4-164 (444)
206 cd01896 DRG The developmentall 99.8 3E-17 6.6E-22 128.4 18.3 151 19-178 2-225 (233)
207 PRK10512 selenocysteinyl-tRNA- 99.8 1E-17 2.2E-22 147.0 17.2 152 19-178 2-165 (614)
208 TIGR03680 eif2g_arch translati 99.8 4.7E-18 1E-22 143.2 14.4 162 15-178 2-195 (406)
209 PRK04000 translation initiatio 99.8 6E-18 1.3E-22 142.6 14.6 164 12-178 4-200 (411)
210 cd04168 TetM_like Tet(M)-like 99.8 1.7E-17 3.6E-22 130.1 16.1 113 19-135 1-129 (237)
211 KOG1707 Predicted Ras related/ 99.8 1.3E-18 2.8E-23 146.1 9.8 164 15-180 7-176 (625)
212 PRK04004 translation initiatio 99.8 3.3E-17 7.1E-22 143.1 18.5 158 16-180 5-219 (586)
213 COG0486 ThdF Predicted GTPase 99.8 1.4E-17 3E-22 137.7 14.4 157 14-181 214-378 (454)
214 COG1160 Predicted GTPases [Gen 99.8 2.1E-17 4.6E-22 136.2 15.1 163 16-183 177-355 (444)
215 cd04167 Snu114p Snu114p subfam 99.7 1.9E-17 4.1E-22 128.1 12.4 113 19-135 2-136 (213)
216 cd01883 EF1_alpha Eukaryotic e 99.7 1E-17 2.2E-22 130.1 10.5 148 19-168 1-194 (219)
217 PRK12735 elongation factor Tu; 99.7 7.6E-17 1.6E-21 135.5 16.2 149 14-166 9-180 (396)
218 PRK12736 elongation factor Tu; 99.7 5.2E-17 1.1E-21 136.4 15.2 148 14-165 9-179 (394)
219 KOG0072 GTP-binding ADP-ribosy 99.7 2.6E-18 5.6E-23 119.8 5.6 158 16-180 17-180 (182)
220 COG0218 Predicted GTPase [Gene 99.7 2.1E-16 4.6E-21 117.6 15.4 159 12-180 19-198 (200)
221 cd04165 GTPBP1_like GTPBP1-lik 99.7 2E-16 4.3E-21 122.9 15.8 153 19-175 1-219 (224)
222 TIGR00485 EF-Tu translation el 99.7 9.6E-17 2.1E-21 134.9 15.1 150 12-165 7-179 (394)
223 COG0370 FeoB Fe2+ transport sy 99.7 1.4E-16 3E-21 137.1 15.7 153 17-178 3-163 (653)
224 KOG0074 GTP-binding ADP-ribosy 99.7 4.5E-17 9.8E-22 113.3 10.2 156 15-176 15-176 (185)
225 COG0532 InfB Translation initi 99.7 3.8E-16 8.2E-21 130.9 17.7 159 16-181 4-172 (509)
226 cd04169 RF3 RF3 subfamily. Pe 99.7 3E-16 6.5E-21 125.0 15.7 115 18-136 3-137 (267)
227 COG2262 HflX GTPases [General 99.7 4.4E-16 9.6E-21 126.7 16.4 163 14-183 189-360 (411)
228 COG1084 Predicted GTPase [Gene 99.7 3.9E-16 8.5E-21 123.6 15.0 161 16-182 167-339 (346)
229 CHL00071 tufA elongation facto 99.7 3.7E-16 8E-21 131.9 15.3 151 13-167 8-181 (409)
230 KOG1423 Ras-like GTPase ERA [C 99.7 9.3E-16 2E-20 120.1 15.4 161 14-178 69-270 (379)
231 KOG1489 Predicted GTP-binding 99.7 5E-16 1.1E-20 122.2 13.8 156 17-176 196-364 (366)
232 cd04104 p47_IIGP_like p47 (47- 99.7 1.3E-15 2.8E-20 116.5 15.0 158 18-183 2-188 (197)
233 PLN00043 elongation factor 1-a 99.7 1E-15 2.2E-20 130.1 15.6 152 14-169 4-203 (447)
234 cd01885 EF2 EF2 (for archaea a 99.7 6.1E-16 1.3E-20 119.8 12.9 113 19-135 2-138 (222)
235 PRK05124 cysN sulfate adenylyl 99.7 5E-16 1.1E-20 133.0 13.3 154 14-170 24-216 (474)
236 cd04170 EF-G_bact Elongation f 99.7 4E-16 8.6E-21 124.9 11.7 150 19-174 1-168 (268)
237 cd01886 EF-G Elongation factor 99.7 5.2E-16 1.1E-20 123.8 12.3 114 19-136 1-130 (270)
238 KOG0462 Elongation factor-type 99.7 4.5E-16 9.7E-21 130.1 11.9 162 13-178 56-234 (650)
239 TIGR02034 CysN sulfate adenyly 99.7 8.3E-16 1.8E-20 129.6 13.7 149 18-169 1-187 (406)
240 PRK00049 elongation factor Tu; 99.7 2.8E-15 6.1E-20 126.0 16.6 149 14-166 9-180 (396)
241 PLN03126 Elongation factor Tu; 99.7 1.2E-15 2.5E-20 130.3 14.0 150 13-166 77-249 (478)
242 PTZ00141 elongation factor 1- 99.7 2.6E-15 5.6E-20 127.7 15.2 153 14-169 4-203 (446)
243 cd01850 CDC_Septin CDC/Septin. 99.7 2.2E-15 4.7E-20 120.7 13.5 143 16-163 3-186 (276)
244 KOG1145 Mitochondrial translat 99.7 6.4E-15 1.4E-19 123.3 16.1 159 12-178 148-315 (683)
245 PLN03127 Elongation factor Tu; 99.6 5.2E-15 1.1E-19 125.7 15.0 145 14-162 58-225 (447)
246 PRK05506 bifunctional sulfate 99.6 4.1E-15 8.9E-20 132.0 14.6 153 14-169 21-211 (632)
247 PRK13351 elongation factor G; 99.6 7.7E-15 1.7E-19 131.5 16.1 120 13-136 4-139 (687)
248 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 3.7E-15 8.1E-20 115.5 12.1 162 19-183 1-180 (232)
249 PTZ00327 eukaryotic translatio 99.6 6.5E-15 1.4E-19 125.0 13.9 164 13-178 30-232 (460)
250 PF01926 MMR_HSR1: 50S ribosom 99.6 1.9E-14 4.2E-19 100.6 14.0 106 19-131 1-116 (116)
251 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 2.3E-14 5E-19 109.5 15.3 159 18-180 1-185 (196)
252 cd01899 Ygr210 Ygr210 subfamil 99.6 1.2E-14 2.6E-19 118.1 14.3 81 20-100 1-110 (318)
253 COG0481 LepA Membrane GTPase L 99.6 1.9E-14 4E-19 118.8 14.0 160 13-178 5-185 (603)
254 COG0536 Obg Predicted GTPase [ 99.6 2.2E-14 4.8E-19 114.2 13.6 166 17-183 159-337 (369)
255 PRK00741 prfC peptide chain re 99.6 1.7E-14 3.7E-19 124.7 13.7 119 14-136 7-145 (526)
256 TIGR00484 EF-G translation elo 99.6 4.2E-14 9.1E-19 126.6 15.1 146 13-164 6-171 (689)
257 COG1163 DRG Predicted GTPase [ 99.6 1.2E-13 2.6E-18 109.3 15.8 161 9-178 55-288 (365)
258 COG3596 Predicted GTPase [Gene 99.6 1.5E-14 3.4E-19 112.1 10.5 163 13-179 35-222 (296)
259 PRK12739 elongation factor G; 99.6 9.5E-14 2.1E-18 124.4 16.9 119 14-136 5-139 (691)
260 TIGR00503 prfC peptide chain r 99.6 5.1E-14 1.1E-18 121.8 14.4 119 14-136 8-146 (527)
261 KOG1191 Mitochondrial GTPase [ 99.6 2.2E-14 4.9E-19 118.8 10.3 169 13-182 264-453 (531)
262 PRK09866 hypothetical protein; 99.6 3.7E-13 8E-18 116.0 18.0 108 67-176 231-350 (741)
263 KOG1490 GTP-binding protein CR 99.6 3.1E-14 6.7E-19 118.1 11.0 175 14-191 165-353 (620)
264 PF09439 SRPRB: Signal recogni 99.6 6.2E-15 1.3E-19 109.6 6.2 115 18-136 4-126 (181)
265 COG4917 EutP Ethanolamine util 99.6 2.8E-14 6.1E-19 97.5 8.7 136 19-176 3-143 (148)
266 PRK00007 elongation factor G; 99.5 2.1E-13 4.5E-18 122.1 15.4 146 13-164 6-171 (693)
267 KOG0077 Vesicle coat complex C 99.5 5.9E-14 1.3E-18 100.4 9.0 155 16-177 19-191 (193)
268 COG5256 TEF1 Translation elong 99.5 1.5E-13 3.2E-18 112.1 12.2 155 14-169 4-201 (428)
269 PRK09602 translation-associate 99.5 6.7E-13 1.5E-17 111.1 16.0 83 18-100 2-113 (396)
270 KOG3905 Dynein light intermedi 99.5 8.3E-13 1.8E-17 104.5 15.0 162 16-180 51-291 (473)
271 KOG0090 Signal recognition par 99.5 9.1E-13 2E-17 98.4 12.5 113 18-135 39-158 (238)
272 PRK12740 elongation factor G; 99.5 1E-12 2.2E-17 117.8 15.2 109 23-135 1-125 (668)
273 COG2895 CysN GTPases - Sulfate 99.5 7.5E-13 1.6E-17 105.8 12.6 152 14-168 3-192 (431)
274 TIGR00490 aEF-2 translation el 99.5 2.7E-13 5.8E-18 121.8 10.8 119 14-136 16-152 (720)
275 PF04548 AIG1: AIG1 family; I 99.5 1.3E-12 2.9E-17 100.9 12.2 161 18-181 1-188 (212)
276 cd01853 Toc34_like Toc34-like 99.4 2.7E-12 5.8E-17 101.2 13.4 122 12-136 26-163 (249)
277 TIGR00991 3a0901s02IAP34 GTP-b 99.4 3.5E-12 7.5E-17 102.3 14.1 122 13-136 34-167 (313)
278 PRK14845 translation initiatio 99.4 5.7E-12 1.2E-16 115.4 17.3 144 29-179 473-673 (1049)
279 cd00066 G-alpha G protein alph 99.4 9.4E-12 2E-16 101.7 15.5 119 64-182 159-314 (317)
280 KOG1707 Predicted Ras related/ 99.4 5E-12 1.1E-16 106.9 14.1 169 9-182 417-586 (625)
281 KOG1144 Translation initiation 99.4 2.7E-12 5.8E-17 110.9 12.1 163 16-185 474-693 (1064)
282 PTZ00258 GTP-binding protein; 99.4 1.2E-11 2.7E-16 102.6 14.2 87 14-100 18-126 (390)
283 TIGR00157 ribosome small subun 99.4 1.7E-12 3.6E-17 102.3 8.5 96 77-176 24-120 (245)
284 PLN00116 translation elongatio 99.4 3.4E-12 7.3E-17 116.5 11.3 119 13-135 15-163 (843)
285 PRK13768 GTPase; Provisional 99.4 5.4E-12 1.2E-16 99.9 10.8 109 67-178 98-246 (253)
286 TIGR00101 ureG urease accessor 99.4 2.3E-11 5E-16 92.9 12.7 102 66-178 92-195 (199)
287 PTZ00416 elongation factor 2; 99.3 7.6E-12 1.6E-16 114.0 11.7 118 14-135 16-157 (836)
288 smart00275 G_alpha G protein a 99.3 6.1E-11 1.3E-15 97.8 15.9 119 65-183 183-338 (342)
289 PRK07560 elongation factor EF- 99.3 2.8E-11 6.1E-16 109.1 15.0 118 14-135 17-152 (731)
290 COG1217 TypA Predicted membran 99.3 2E-11 4.3E-16 100.9 12.2 145 16-164 4-170 (603)
291 smart00010 small_GTPase Small 99.3 2.1E-11 4.6E-16 85.8 10.8 114 18-168 1-115 (124)
292 PF05783 DLIC: Dynein light in 99.3 3.8E-11 8.2E-16 102.1 14.2 164 16-182 24-267 (472)
293 KOG0458 Elongation factor 1 al 99.3 1.8E-11 3.8E-16 103.7 11.4 153 16-170 176-373 (603)
294 COG5257 GCD11 Translation init 99.3 6.6E-12 1.4E-16 99.4 8.3 167 15-183 8-206 (415)
295 TIGR00073 hypB hydrogenase acc 99.3 2.5E-11 5.4E-16 93.5 11.4 150 16-177 21-205 (207)
296 KOG1532 GTPase XAB1, interacts 99.3 2.3E-11 4.9E-16 94.4 10.4 118 66-183 116-268 (366)
297 PF00350 Dynamin_N: Dynamin fa 99.3 5.6E-11 1.2E-15 88.4 12.1 62 68-132 103-168 (168)
298 cd01882 BMS1 Bms1. Bms1 is an 99.3 7.9E-11 1.7E-15 91.8 13.4 140 16-167 38-184 (225)
299 KOG0705 GTPase-activating prot 99.3 2.6E-11 5.7E-16 101.8 9.9 180 16-202 29-212 (749)
300 KOG0461 Selenocysteine-specifi 99.3 1.6E-10 3.4E-15 92.5 13.8 163 15-181 5-195 (522)
301 PRK09435 membrane ATPase/prote 99.2 1.8E-10 3.8E-15 94.1 12.8 104 65-179 148-260 (332)
302 PF03029 ATP_bind_1: Conserved 99.2 3.9E-12 8.4E-17 99.6 3.0 111 67-177 92-235 (238)
303 COG0480 FusA Translation elong 99.2 1.4E-10 3E-15 102.7 13.1 119 14-136 7-142 (697)
304 PRK09601 GTP-binding protein Y 99.2 7.6E-10 1.6E-14 91.1 16.1 83 18-100 3-107 (364)
305 TIGR02836 spore_IV_A stage IV 99.2 7.3E-10 1.6E-14 91.5 15.7 145 14-163 14-219 (492)
306 COG3276 SelB Selenocysteine-sp 99.2 2.8E-10 6.1E-15 93.9 12.5 153 18-179 1-162 (447)
307 PF00735 Septin: Septin; Inte 99.2 2.1E-10 4.6E-15 92.0 11.2 114 16-135 3-155 (281)
308 COG0050 TufB GTPases - transla 99.2 3.3E-10 7.1E-15 88.9 11.6 143 14-163 9-177 (394)
309 TIGR00993 3a0901s04IAP86 chlor 99.2 6.1E-10 1.3E-14 96.8 13.2 122 13-136 114-250 (763)
310 KOG0082 G-protein alpha subuni 99.2 2.2E-09 4.7E-14 87.4 15.3 120 64-183 193-348 (354)
311 PF05049 IIGP: Interferon-indu 99.1 3.7E-10 8E-15 93.0 10.5 161 15-183 33-222 (376)
312 smart00053 DYNc Dynamin, GTPas 99.1 1E-09 2.2E-14 85.8 12.4 68 66-136 125-206 (240)
313 COG0378 HypB Ni2+-binding GTPa 99.1 5.3E-10 1.1E-14 83.0 10.0 150 17-178 13-200 (202)
314 TIGR00750 lao LAO/AO transport 99.1 8.3E-10 1.8E-14 89.7 10.4 104 65-179 126-238 (300)
315 COG4108 PrfC Peptide chain rel 99.1 1.3E-09 2.9E-14 89.8 11.4 133 17-155 12-164 (528)
316 KOG1547 Septin CDC10 and relat 99.1 2E-09 4.4E-14 82.2 11.6 155 16-175 45-239 (336)
317 KOG0468 U5 snRNP-specific prot 99.1 8.9E-10 1.9E-14 94.7 10.3 119 12-134 123-261 (971)
318 COG5019 CDC3 Septin family pro 99.1 2.5E-09 5.4E-14 86.6 11.4 115 16-135 22-175 (373)
319 KOG3886 GTP-binding protein [S 99.0 6E-10 1.3E-14 84.5 6.3 146 17-164 4-164 (295)
320 cd01855 YqeH YqeH. YqeH is an 99.0 4.8E-09 1E-13 79.7 10.2 96 76-178 21-124 (190)
321 PRK10463 hydrogenase nickel in 99.0 7.6E-10 1.6E-14 88.3 5.2 55 123-177 231-287 (290)
322 KOG0410 Predicted GTP binding 99.0 1.3E-09 2.8E-14 86.6 6.3 161 15-187 176-349 (410)
323 cd01900 YchF YchF subfamily. 98.9 7.2E-09 1.6E-13 82.6 10.0 81 20-100 1-103 (274)
324 KOG2655 Septin family protein 98.9 1.8E-08 4E-13 82.1 12.2 156 16-180 20-215 (366)
325 KOG1954 Endocytosis/signaling 98.9 9E-09 2E-13 83.3 10.2 120 14-136 55-225 (532)
326 COG0012 Predicted GTPase, prob 98.9 1.9E-08 4.1E-13 82.0 12.0 84 17-100 2-108 (372)
327 cd01859 MJ1464 MJ1464. This f 98.9 7.5E-09 1.6E-13 76.1 7.9 95 79-179 2-96 (156)
328 PRK12289 GTPase RsgA; Reviewed 98.9 6.8E-09 1.5E-13 85.7 8.4 91 82-177 82-173 (352)
329 KOG1486 GTP-binding protein DR 98.9 1.1E-07 2.5E-12 73.3 14.3 89 14-104 59-154 (364)
330 cd01854 YjeQ_engC YjeQ/EngC. 98.9 9.5E-09 2.1E-13 83.0 8.5 88 84-176 73-161 (287)
331 PF00503 G-alpha: G-protein al 98.8 3.6E-08 7.7E-13 83.1 11.0 115 64-178 234-389 (389)
332 PRK12288 GTPase RsgA; Reviewed 98.8 2.6E-08 5.6E-13 82.2 9.7 88 87-177 118-206 (347)
333 COG1703 ArgK Putative periplas 98.8 2.4E-08 5.1E-13 79.0 8.4 150 16-177 50-252 (323)
334 PRK00098 GTPase RsgA; Reviewed 98.8 2E-08 4.3E-13 81.5 8.1 87 86-176 77-164 (298)
335 KOG0464 Elongation factor G [T 98.8 6.7E-09 1.4E-13 85.2 5.1 154 9-168 29-200 (753)
336 TIGR03597 GTPase_YqeH ribosome 98.8 5.1E-08 1.1E-12 81.2 9.8 96 75-177 49-151 (360)
337 PF03308 ArgK: ArgK protein; 98.8 8.8E-09 1.9E-13 80.2 4.5 151 16-178 28-229 (266)
338 KOG0460 Mitochondrial translat 98.8 4.6E-08 1E-12 78.4 8.4 150 14-166 51-225 (449)
339 KOG3887 Predicted small GTPase 98.7 1.1E-07 2.3E-12 73.0 9.6 158 17-183 27-206 (347)
340 COG5258 GTPBP1 GTPase [General 98.7 3.2E-07 6.9E-12 74.9 12.2 158 13-174 113-334 (527)
341 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 3.9E-08 8.5E-13 71.0 6.4 54 19-76 85-138 (141)
342 TIGR03348 VI_IcmF type VI secr 98.7 2.4E-07 5.2E-12 87.8 12.6 115 17-136 111-257 (1169)
343 KOG2486 Predicted GTPase [Gene 98.7 4.5E-08 9.6E-13 76.5 5.9 162 6-176 125-313 (320)
344 KOG0467 Translation elongation 98.7 9E-08 1.9E-12 83.8 8.2 118 13-134 5-136 (887)
345 KOG0448 Mitofusin 1 GTPase, in 98.6 9.1E-07 2E-11 76.9 13.7 145 15-163 107-310 (749)
346 KOG0447 Dynamin-like GTP bindi 98.6 2.1E-06 4.6E-11 73.1 15.6 143 5-150 296-507 (980)
347 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.1E-07 2.5E-12 69.9 7.1 55 17-75 102-156 (157)
348 cd04178 Nucleostemin_like Nucl 98.6 1.1E-07 2.3E-12 71.0 6.7 56 16-75 116-171 (172)
349 KOG0466 Translation initiation 98.6 4E-08 8.6E-13 77.7 3.5 165 14-180 35-242 (466)
350 cd01856 YlqF YlqF. Proteins o 98.6 1.7E-07 3.8E-12 69.9 6.8 58 15-76 113-170 (171)
351 KOG1143 Predicted translation 98.6 4.2E-07 9E-12 74.0 9.1 157 12-172 162-381 (591)
352 cd01858 NGP_1 NGP-1. Autoanti 98.5 3.9E-07 8.5E-12 67.0 7.6 90 86-178 5-94 (157)
353 cd01855 YqeH YqeH. YqeH is an 98.5 2.2E-07 4.8E-12 70.5 6.0 55 18-75 128-189 (190)
354 cd01859 MJ1464 MJ1464. This f 98.5 4.2E-07 9E-12 66.7 7.1 56 16-75 100-155 (156)
355 cd01851 GBP Guanylate-binding 98.5 4.9E-06 1.1E-10 64.8 12.5 88 14-102 4-104 (224)
356 cd01849 YlqF_related_GTPase Yl 98.5 9.5E-07 2.1E-11 64.8 8.0 85 91-179 1-85 (155)
357 TIGR00092 GTP-binding protein 98.5 8.7E-07 1.9E-11 73.2 8.5 83 18-100 3-108 (368)
358 COG1618 Predicted nucleotide k 98.5 3.3E-05 7.1E-10 56.0 15.3 147 15-178 3-175 (179)
359 TIGR03596 GTPase_YlqF ribosome 98.5 6.3E-07 1.4E-11 72.1 7.4 57 16-76 117-173 (276)
360 PRK09563 rbgA GTPase YlqF; Rev 98.4 8.4E-07 1.8E-11 71.7 8.0 59 15-77 119-177 (287)
361 COG1161 Predicted GTPases [Gen 98.4 5.1E-07 1.1E-11 74.0 6.5 57 16-76 131-187 (322)
362 COG5192 BMS1 GTP-binding prote 98.4 3.3E-06 7.1E-11 72.3 11.0 138 14-164 66-211 (1077)
363 KOG0099 G protein subunit Galp 98.4 4E-06 8.7E-11 65.2 10.3 120 64-183 200-373 (379)
364 PF03193 DUF258: Protein of un 98.4 3.7E-07 8E-12 66.8 4.3 59 18-79 36-100 (161)
365 KOG0465 Mitochondrial elongati 98.4 7.9E-07 1.7E-11 76.3 6.3 119 14-136 36-170 (721)
366 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.6E-06 3.4E-11 62.6 7.1 76 84-165 6-83 (141)
367 COG3523 IcmF Type VI protein s 98.4 2.3E-06 5E-11 79.7 9.6 163 18-183 126-318 (1188)
368 PRK10416 signal recognition pa 98.4 6.3E-07 1.4E-11 73.3 5.4 144 17-172 114-303 (318)
369 PRK13796 GTPase YqeH; Provisio 98.3 4.4E-06 9.6E-11 69.8 10.2 95 76-177 56-157 (365)
370 TIGR00064 ftsY signal recognit 98.3 3.4E-06 7.4E-11 67.6 9.2 97 64-173 153-262 (272)
371 PRK14974 cell division protein 98.3 7E-07 1.5E-11 73.3 5.3 95 66-173 223-324 (336)
372 cd01849 YlqF_related_GTPase Yl 98.3 1.3E-06 2.9E-11 64.0 6.2 56 15-75 98-154 (155)
373 PRK12288 GTPase RsgA; Reviewed 98.3 1.2E-06 2.5E-11 72.5 6.4 58 20-80 208-271 (347)
374 KOG1491 Predicted GTP-binding 98.3 1.6E-06 3.5E-11 69.7 6.9 85 16-100 19-125 (391)
375 PRK01889 GTPase RsgA; Reviewed 98.3 2.4E-06 5.1E-11 71.1 7.9 83 87-175 110-193 (356)
376 cd01856 YlqF YlqF. Proteins o 98.3 3.1E-06 6.8E-11 63.1 7.6 98 73-178 2-100 (171)
377 TIGR01425 SRP54_euk signal rec 98.3 1.5E-05 3.3E-10 67.3 12.2 133 17-159 100-272 (429)
378 TIGR03596 GTPase_YlqF ribosome 98.3 5.5E-06 1.2E-10 66.6 8.8 100 73-180 4-104 (276)
379 KOG4273 Uncharacterized conser 98.3 1.4E-05 3E-10 61.9 10.4 159 17-179 4-222 (418)
380 cd03112 CobW_like The function 98.3 7.5E-06 1.6E-10 60.3 8.6 22 19-40 2-23 (158)
381 KOG0085 G protein subunit Galp 98.2 3.5E-06 7.5E-11 64.5 6.4 121 63-183 196-353 (359)
382 TIGR00157 ribosome small subun 98.2 3.3E-06 7.3E-11 66.6 6.0 56 19-78 122-183 (245)
383 KOG1487 GTP-binding protein DR 98.2 1.5E-05 3.3E-10 62.0 9.1 88 18-107 60-154 (358)
384 COG1162 Predicted GTPases [Gen 98.2 3E-06 6.5E-11 67.8 5.3 58 19-79 166-229 (301)
385 PF09547 Spore_IV_A: Stage IV 98.2 5.5E-05 1.2E-09 63.1 12.6 143 16-163 16-219 (492)
386 PRK12289 GTPase RsgA; Reviewed 98.2 4.1E-06 8.9E-11 69.4 6.0 56 20-78 175-236 (352)
387 KOG0463 GTP-binding protein GP 98.1 1.8E-05 3.9E-10 64.8 8.9 149 16-172 132-351 (641)
388 PRK12727 flagellar biosynthesi 98.1 0.00014 3.1E-09 62.9 14.5 157 17-185 350-546 (559)
389 PRK13796 GTPase YqeH; Provisio 98.1 5.3E-06 1.1E-10 69.3 5.5 57 18-77 161-221 (365)
390 PRK11889 flhF flagellar biosyn 98.1 6.1E-06 1.3E-10 68.6 5.5 133 18-160 242-411 (436)
391 TIGR03597 GTPase_YqeH ribosome 98.1 8.5E-06 1.8E-10 68.0 6.5 55 18-77 155-215 (360)
392 PRK09563 rbgA GTPase YlqF; Rev 98.1 2.8E-05 6.1E-10 62.9 9.1 101 73-181 7-108 (287)
393 cd03115 SRP The signal recogni 98.0 4.2E-05 9.1E-10 57.1 9.0 83 65-157 82-170 (173)
394 KOG3859 Septins (P-loop GTPase 98.0 3.1E-05 6.7E-10 60.9 8.1 60 16-75 41-104 (406)
395 PRK14722 flhF flagellar biosyn 98.0 8.6E-05 1.9E-09 61.9 11.2 139 18-160 138-315 (374)
396 PRK14721 flhF flagellar biosyn 98.0 9.3E-05 2E-09 62.6 11.5 138 17-167 191-365 (420)
397 cd03110 Fer4_NifH_child This p 98.0 0.00027 5.8E-09 53.0 12.9 86 64-158 91-176 (179)
398 PRK13695 putative NTPase; Prov 98.0 0.00035 7.5E-09 52.2 13.3 79 86-178 93-172 (174)
399 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.5E-05 3.2E-10 64.5 6.2 59 18-79 162-226 (287)
400 COG1162 Predicted GTPases [Gen 98.0 5.8E-05 1.3E-09 60.5 9.0 92 84-178 74-166 (301)
401 PRK05703 flhF flagellar biosyn 97.9 6.6E-05 1.4E-09 63.9 9.4 91 65-167 299-396 (424)
402 COG0523 Putative GTPases (G3E 97.9 0.00019 4E-09 58.8 11.5 89 66-162 85-185 (323)
403 PF00448 SRP54: SRP54-type pro 97.9 8E-06 1.7E-10 62.3 3.4 86 66-161 84-175 (196)
404 PRK00098 GTPase RsgA; Reviewed 97.9 2E-05 4.3E-10 64.1 5.9 56 19-77 166-227 (298)
405 cd03114 ArgK-like The function 97.9 8E-05 1.7E-09 54.2 8.0 58 65-133 91-148 (148)
406 KOG0459 Polypeptide release fa 97.9 2.5E-05 5.5E-10 64.4 5.6 159 13-172 75-279 (501)
407 PF03266 NTPase_1: NTPase; In 97.9 0.00011 2.4E-09 54.6 8.2 135 19-167 1-163 (168)
408 COG1419 FlhF Flagellar GTP-bin 97.8 0.00085 1.8E-08 56.0 13.8 155 17-182 203-397 (407)
409 KOG1424 Predicted GTP-binding 97.8 3.5E-05 7.6E-10 65.3 5.6 56 17-76 314-369 (562)
410 PRK11537 putative GTP-binding 97.8 0.00052 1.1E-08 56.3 12.1 86 66-160 91-186 (318)
411 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00015 3.2E-09 43.1 6.5 47 86-133 10-58 (58)
412 PRK06995 flhF flagellar biosyn 97.8 4.6E-05 9.9E-10 65.5 6.1 140 18-170 257-434 (484)
413 PF02492 cobW: CobW/HypB/UreG, 97.8 2.6E-05 5.6E-10 58.6 4.0 82 66-153 85-171 (178)
414 PRK14723 flhF flagellar biosyn 97.8 7.5E-05 1.6E-09 67.3 7.1 139 19-167 187-362 (767)
415 PRK12724 flagellar biosynthesi 97.8 0.00024 5.1E-09 59.9 9.4 134 18-161 224-394 (432)
416 TIGR00959 ffh signal recogniti 97.8 0.00046 1E-08 58.7 11.3 87 65-161 182-274 (428)
417 KOG2485 Conserved ATP/GTP bind 97.7 4.4E-05 9.4E-10 61.0 4.7 63 13-76 139-206 (335)
418 PRK12723 flagellar biosynthesi 97.7 0.00041 8.8E-09 58.3 10.8 139 17-167 174-351 (388)
419 PRK00771 signal recognition pa 97.7 0.00013 2.8E-09 62.2 7.8 136 15-160 93-266 (437)
420 KOG0469 Elongation factor 2 [T 97.7 9E-05 1.9E-09 62.9 6.3 118 14-135 16-163 (842)
421 PRK06731 flhF flagellar biosyn 97.7 5.8E-05 1.3E-09 60.3 5.1 134 17-160 75-245 (270)
422 PRK10867 signal recognition pa 97.7 0.0001 2.2E-09 62.7 6.1 87 65-161 183-275 (433)
423 cd02042 ParA ParA and ParB of 97.7 0.00041 8.8E-09 47.1 8.1 82 20-113 2-84 (104)
424 PRK12726 flagellar biosynthesi 97.7 0.00029 6.2E-09 58.7 8.5 87 65-161 285-377 (407)
425 cd02038 FleN-like FleN is a me 97.6 0.00027 5.8E-09 50.8 6.7 107 21-135 4-110 (139)
426 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.0007 1.5E-08 44.8 8.3 69 20-102 2-71 (99)
427 COG3640 CooC CO dehydrogenase 97.6 0.00033 7E-09 54.1 7.2 75 68-154 136-211 (255)
428 cd00009 AAA The AAA+ (ATPases 97.5 0.00087 1.9E-08 47.6 8.8 24 18-41 20-43 (151)
429 cd03111 CpaE_like This protein 97.5 0.00072 1.6E-08 46.2 7.1 99 24-131 7-106 (106)
430 PF11111 CENP-M: Centromere pr 97.5 0.0096 2.1E-07 43.9 13.2 142 13-178 11-152 (176)
431 PF00004 AAA: ATPase family as 97.4 0.00099 2.1E-08 46.9 7.7 21 20-40 1-21 (132)
432 TIGR02475 CobW cobalamin biosy 97.4 0.0026 5.6E-08 52.8 10.8 21 19-39 6-26 (341)
433 KOG0780 Signal recognition par 97.4 0.0005 1.1E-08 56.7 6.2 96 13-108 97-232 (483)
434 PF13401 AAA_22: AAA domain; P 97.4 0.00016 3.5E-09 51.0 3.0 22 19-40 6-27 (131)
435 KOG2484 GTPase [General functi 97.3 0.0002 4.4E-09 59.0 3.5 59 14-76 249-307 (435)
436 cd03222 ABC_RNaseL_inhibitor T 97.3 0.004 8.6E-08 46.7 9.9 99 19-130 27-130 (177)
437 cd02036 MinD Bacterial cell di 97.3 0.0098 2.1E-07 44.2 11.9 84 67-157 64-147 (179)
438 COG0563 Adk Adenylate kinase a 97.3 0.00024 5.3E-09 53.2 3.1 23 18-40 1-23 (178)
439 PF05621 TniB: Bacterial TniB 97.3 0.0024 5.3E-08 51.4 8.8 106 13-132 57-190 (302)
440 PF13207 AAA_17: AAA domain; P 97.2 0.00033 7.2E-09 48.8 3.2 22 19-40 1-22 (121)
441 PRK08118 topology modulation p 97.2 0.00032 6.9E-09 52.1 3.1 23 18-40 2-24 (167)
442 PF07015 VirC1: VirC1 protein; 97.2 0.0035 7.7E-08 48.6 8.8 103 65-172 83-187 (231)
443 PRK07261 topology modulation p 97.2 0.00035 7.6E-09 52.1 3.1 23 18-40 1-23 (171)
444 PF13555 AAA_29: P-loop contai 97.1 0.0005 1.1E-08 41.9 3.0 22 19-40 25-46 (62)
445 PF13671 AAA_33: AAA domain; P 97.1 0.00049 1.1E-08 49.4 3.0 20 20-39 2-21 (143)
446 COG1116 TauB ABC-type nitrate/ 97.0 0.0017 3.6E-08 50.7 5.8 23 20-42 32-54 (248)
447 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0033 7.1E-08 44.7 6.8 23 19-41 24-46 (133)
448 COG0541 Ffh Signal recognition 97.0 0.0012 2.5E-08 55.5 5.2 26 14-39 97-122 (451)
449 PRK01889 GTPase RsgA; Reviewed 97.0 0.00077 1.7E-08 56.2 4.1 24 18-41 196-219 (356)
450 PF05729 NACHT: NACHT domain 97.0 0.003 6.6E-08 46.2 6.7 21 20-40 3-23 (166)
451 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.013 2.8E-07 42.3 9.8 23 19-41 28-50 (144)
452 PF03215 Rad17: Rad17 cell cyc 96.9 0.007 1.5E-07 52.9 9.3 22 19-40 47-68 (519)
453 PRK10646 ADP-binding protein; 96.9 0.0076 1.6E-07 43.9 8.0 23 19-41 30-52 (153)
454 cd02019 NK Nucleoside/nucleoti 96.9 0.00094 2E-08 41.8 3.0 21 20-40 2-22 (69)
455 PRK05416 glmZ(sRNA)-inactivati 96.9 0.014 3.1E-07 47.2 10.4 88 18-134 7-96 (288)
456 KOG0781 Signal recognition par 96.9 0.0006 1.3E-08 57.7 2.5 93 64-159 465-564 (587)
457 KOG0446 Vacuolar sorting prote 96.9 0.00044 9.5E-09 61.8 1.8 69 66-136 132-213 (657)
458 COG0802 Predicted ATPase or ki 96.9 0.0049 1.1E-07 44.4 6.8 24 19-42 27-50 (149)
459 PF02367 UPF0079: Uncharacteri 96.9 0.0028 6.2E-08 44.4 5.4 23 18-40 16-38 (123)
460 PF00005 ABC_tran: ABC transpo 96.9 0.00096 2.1E-08 47.5 3.1 23 19-41 13-35 (137)
461 KOG2423 Nucleolar GTPase [Gene 96.9 0.00039 8.5E-09 57.5 1.1 59 13-75 303-361 (572)
462 PRK06217 hypothetical protein; 96.9 0.001 2.2E-08 50.2 3.3 23 18-40 2-24 (183)
463 PF13521 AAA_28: AAA domain; P 96.9 0.0007 1.5E-08 49.9 2.3 22 19-40 1-22 (163)
464 COG3845 ABC-type uncharacteriz 96.9 0.01 2.2E-07 50.6 9.4 55 79-134 148-202 (501)
465 cd04178 Nucleostemin_like Nucl 96.8 0.0033 7.1E-08 46.9 5.8 44 91-136 1-44 (172)
466 COG1126 GlnQ ABC-type polar am 96.8 0.0014 2.9E-08 50.2 3.7 41 141-181 144-186 (240)
467 PRK04195 replication factor C 96.8 0.029 6.3E-07 48.9 12.4 24 17-40 39-62 (482)
468 KOG2743 Cobalamin synthesis pr 96.8 0.0053 1.1E-07 49.2 7.0 121 14-137 54-226 (391)
469 COG0552 FtsY Signal recognitio 96.8 0.002 4.4E-08 52.3 4.7 145 14-171 136-327 (340)
470 KOG1534 Putative transcription 96.8 0.0021 4.6E-08 48.8 4.5 70 67-136 99-178 (273)
471 PF03205 MobB: Molybdopterin g 96.8 0.0012 2.6E-08 47.6 3.0 23 19-41 2-24 (140)
472 smart00382 AAA ATPases associa 96.8 0.0013 2.8E-08 46.3 3.2 25 18-42 3-27 (148)
473 PRK03839 putative kinase; Prov 96.8 0.0012 2.7E-08 49.5 3.1 22 19-40 2-23 (180)
474 PRK14738 gmk guanylate kinase; 96.8 0.002 4.4E-08 49.5 4.3 27 14-40 10-36 (206)
475 cd01131 PilT Pilus retraction 96.8 0.0083 1.8E-07 45.8 7.6 22 20-41 4-25 (198)
476 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.01 2.2E-07 43.4 7.8 23 19-41 27-49 (157)
477 COG1136 SalX ABC-type antimicr 96.8 0.0017 3.6E-08 50.4 3.7 24 19-42 33-56 (226)
478 PRK10078 ribose 1,5-bisphospho 96.7 0.0014 3.1E-08 49.5 3.2 22 19-40 4-25 (186)
479 COG4598 HisP ABC-type histidin 96.7 0.008 1.7E-07 44.9 6.8 43 139-181 158-202 (256)
480 PF13238 AAA_18: AAA domain; P 96.7 0.0014 3E-08 45.9 2.9 21 20-40 1-21 (129)
481 cd03216 ABC_Carb_Monos_I This 96.7 0.03 6.5E-07 41.3 10.1 23 19-41 28-50 (163)
482 COG3839 MalK ABC-type sugar tr 96.7 0.0018 3.9E-08 53.2 3.7 23 20-42 32-54 (338)
483 cd01120 RecA-like_NTPases RecA 96.7 0.014 3.1E-07 42.3 8.2 22 20-41 2-23 (165)
484 cd00071 GMPK Guanosine monopho 96.7 0.0016 3.5E-08 46.7 3.0 21 20-40 2-22 (137)
485 PRK14530 adenylate kinase; Pro 96.7 0.0017 3.6E-08 50.3 3.2 22 18-39 4-25 (215)
486 PF07728 AAA_5: AAA domain (dy 96.6 0.0017 3.7E-08 46.4 3.0 22 19-40 1-22 (139)
487 KOG1533 Predicted GTPase [Gene 96.6 0.0018 4E-08 50.0 3.1 70 66-135 97-176 (290)
488 KOG3347 Predicted nucleotide k 96.6 0.0016 3.4E-08 46.8 2.5 26 14-39 4-29 (176)
489 TIGR02322 phosphon_PhnN phosph 96.6 0.0018 3.8E-08 48.5 3.0 22 19-40 3-24 (179)
490 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0019 4.2E-08 44.0 2.8 20 19-38 17-36 (107)
491 PRK14532 adenylate kinase; Pro 96.6 0.0019 4.1E-08 48.8 3.1 22 18-39 1-22 (188)
492 PRK13949 shikimate kinase; Pro 96.6 0.002 4.3E-08 47.9 3.1 22 19-40 3-24 (169)
493 TIGR03263 guanyl_kin guanylate 96.6 0.0021 4.5E-08 48.1 3.1 22 19-40 3-24 (180)
494 cd02032 Bchl_like This family 96.5 0.091 2E-06 42.0 12.6 81 66-155 116-198 (267)
495 PF04665 Pox_A32: Poxvirus A32 96.5 0.0022 4.8E-08 50.2 3.1 27 14-40 10-36 (241)
496 KOG4181 Uncharacterized conser 96.5 0.034 7.3E-07 45.6 9.7 26 16-41 187-212 (491)
497 cd01130 VirB11-like_ATPase Typ 96.5 0.0024 5.2E-08 48.2 3.2 23 18-40 26-48 (186)
498 cd03238 ABC_UvrA The excision 96.5 0.0025 5.4E-08 47.7 3.2 22 18-39 22-43 (176)
499 PLN03025 replication factor C 96.5 0.026 5.6E-07 46.5 9.5 24 18-41 35-58 (319)
500 PRK04296 thymidine kinase; Pro 96.5 0.017 3.7E-07 43.8 7.8 21 19-39 4-24 (190)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-42 Score=249.41 Aligned_cols=177 Identities=49% Similarity=0.836 Sum_probs=169.3
Q ss_pred CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA 90 (225)
Q Consensus 11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (225)
+...++.+||+|+|+.|||||+|+.||..+.|...+..|.|.++..+.+.++++.+.+++|||+|+++|+++...+++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHH
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVEN 169 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 169 (225)
|++|+|||+++.+||+.+..|+.++..+...++|.++|+||+|+.+.+.++.++++.++..++++ |+|+||+++.+|++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhhccc
Q 027292 170 AFMTVLTEIFNIVNKKNL 187 (225)
Q Consensus 170 ~f~~l~~~~~~~~~~~~~ 187 (225)
+|..+...+.+++.....
T Consensus 163 ~F~~la~~lk~~~~~~~~ 180 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLHVK 180 (205)
T ss_pred HHHHHHHHHHHhcccCCC
Confidence 999999998887655443
No 2
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-40 Score=244.28 Aligned_cols=216 Identities=65% Similarity=1.018 Sum_probs=195.3
Q ss_pred CCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 027292 8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYY 87 (225)
Q Consensus 8 ~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 87 (225)
.+.++..++.+||+++|++++|||-|+.+|..++|.....+|.+.++....+.++++.+..+||||+|+++|++....++
T Consensus 5 ~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY 84 (222)
T KOG0087|consen 5 RDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY 84 (222)
T ss_pred cCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
+.+.++++|||+++..+|+.+.+|+.+++.+...+++++||+||+||.+-+.+..++++.++...+..|+++||.+..+|
T Consensus 85 rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 85 RGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNV 164 (222)
T ss_pred cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccH
Confidence 99999999999999999999999999999999889999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCC--CCCCCCCCCCCcC
Q 027292 168 ENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGP--AQEIPAKSSMCCR 224 (225)
Q Consensus 168 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~cc~ 224 (225)
..+|+.++..+++...++..........+ +.+..++++.+.+. .+....++++||+
T Consensus 165 e~aF~~~l~~I~~~vs~k~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~cc~ 222 (222)
T KOG0087|consen 165 EKAFERVLTEIYKIVSKKQLDENNDPLES-SSPLQGQEISVHPTSEEPFSPTKKSGCCS 222 (222)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccc-CCCCCCcccccccCCccccccccCCCCCC
Confidence 99999999999999998888766543333 35556666666533 3346667788885
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-39 Score=237.39 Aligned_cols=172 Identities=43% Similarity=0.756 Sum_probs=163.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...+||+|+|+.+||||||+.|+..+.|.....+|++..+....+..+...+.+.||||+|+++|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||+++.+||..++.|+.++.+...++.-+.||+||+||.+.+++..++++.++...++.|+|+||+++.||+++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999988888899999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 027292 175 LTEIFNIVNKKN 186 (225)
Q Consensus 175 ~~~~~~~~~~~~ 186 (225)
.+.+.....+..
T Consensus 163 a~~lp~~~~~~~ 174 (200)
T KOG0092|consen 163 AEKLPCSDPQER 174 (200)
T ss_pred HHhccCcccccc
Confidence 998877654433
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-39 Score=236.15 Aligned_cols=167 Identities=35% Similarity=0.709 Sum_probs=158.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+|++|+|+.+|||||||++|+.+.+...|.+|+|+++...++.+.+..+.+++|||+|+|+|+++.+.|++++.++|+|
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV 101 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 101 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHADK-NIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
||+++..+|+....|++.++..... ++-++||+||.||.+++++..++....++++++.|+++||+.|.||.++|..|.
T Consensus 102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIa 181 (221)
T KOG0094|consen 102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIA 181 (221)
T ss_pred EeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHH
Confidence 9999999999999999999888765 488999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHh
Q 027292 176 TEIFNIVN 183 (225)
Q Consensus 176 ~~~~~~~~ 183 (225)
..+.....
T Consensus 182 a~l~~~~~ 189 (221)
T KOG0094|consen 182 AALPGMEV 189 (221)
T ss_pred HhccCccc
Confidence 76665543
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-39 Score=237.25 Aligned_cols=173 Identities=45% Similarity=0.839 Sum_probs=168.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
+.++.+||+++|+++||||+|+.+|..+.+...+..|.++++...++..++..+.+++|||+|+++|..+...|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
+++|||+++..+++.+..|+..+.++...++|.+||+||+|+.+.+++..+..++++.++|+.|+|+||++|.||.++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 027292 173 TVLTEIFNIVNKK 185 (225)
Q Consensus 173 ~l~~~~~~~~~~~ 185 (225)
.|.+.++..+.+.
T Consensus 168 ~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 168 SLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHhhcchh
Confidence 9999999866554
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=224.66 Aligned_cols=170 Identities=42% Similarity=0.726 Sum_probs=162.1
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
...+.++||+++|.+|+|||||+.+|..+.+.+....+.+.++..+.+.+++..+++.||||+|+++|+.+.+.|++.+.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA 170 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 170 (225)
++|+|||++..++|..+..|++++..++. +++-.++|+||+|....+.++.++..+|++++++.|+|+||++.++|...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 99999999999999999999999998885 56778999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 171 FMTVLTEIFNI 181 (225)
Q Consensus 171 f~~l~~~~~~~ 181 (225)
|+.++..+++-
T Consensus 166 FeelveKIi~t 176 (209)
T KOG0080|consen 166 FEELVEKIIET 176 (209)
T ss_pred HHHHHHHHhcC
Confidence 99999998865
No 7
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.3e-37 Score=241.29 Aligned_cols=209 Identities=63% Similarity=0.970 Sum_probs=177.3
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
..++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|+
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 35678999999999999999999999999888888998888888888888889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.++...+++++++||++|.|++++|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987777788888999998999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCcCC
Q 027292 173 TVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT 225 (225)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~ 225 (225)
++++.+.+....+........ +..++...++++.+.+ ..+.+++|||++
T Consensus 168 ~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~c~~ 216 (216)
T PLN03110 168 TILLEIYHIISKKALAAQEAA-ANSGLPGQGTTINVAD---TSGNNKRGCCST 216 (216)
T ss_pred HHHHHHHHHhhccccccccCc-ccccCcCcCCcccccC---ccCCCCCCCcCC
Confidence 999999987665554443322 2223334455555522 235577779986
No 8
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-38 Score=226.46 Aligned_cols=175 Identities=51% Similarity=0.891 Sum_probs=167.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
+.+.+|++++|+.|||||+|+.+|+...|.+.+..|.|.++....+.+++..+++++|||+|++.|++....|++.+-++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
|+|||+++.++|..+..|+..++++...|..++|++||+|+...+.++.++.+.|+++.++.|+++||+++++|+++|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 027292 174 VLTEIFNIVNKKNLT 188 (225)
Q Consensus 174 l~~~~~~~~~~~~~~ 188 (225)
....+++..+..-.+
T Consensus 163 ta~~Iy~~~q~g~~~ 177 (216)
T KOG0098|consen 163 TAKEIYRKIQDGVFD 177 (216)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999887755443
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.2e-36 Score=231.24 Aligned_cols=166 Identities=37% Similarity=0.774 Sum_probs=152.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+.|+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 35899999999999999999999999888899888888888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-GLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
|++++++++.+..|+..+......+.|++||+||+|+.+.+.+..++..+++++. ++.|+++||++|.|++++|+++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887776668999999999999877888888888888875 788999999999999999999999
Q ss_pred HHHHHHh
Q 027292 177 EIFNIVN 183 (225)
Q Consensus 177 ~~~~~~~ 183 (225)
.+.+...
T Consensus 161 ~~~~~~~ 167 (202)
T cd04120 161 DILKKMP 167 (202)
T ss_pred HHHHhCc
Confidence 8876543
No 10
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-37 Score=215.60 Aligned_cols=213 Identities=44% Similarity=0.707 Sum_probs=197.9
Q ss_pred CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 027292 10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89 (225)
Q Consensus 10 ~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 89 (225)
+.++.++.+|++++|+.|+|||.|+++|+.+.+......+.+.++....+.+.++.++++||||+|+++|++....+++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN 169 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 169 (225)
+-++++|||+++.++++.+..|+...+-....++.+++++||.|+...+++...++..|+++..+.+.++|+.+|++|++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCC
Q 027292 170 AFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMC 222 (225)
Q Consensus 170 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 222 (225)
.|-...+.++......++++++..+.-+=....-.++..+.+.+...++..+|
T Consensus 162 aFl~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c~C 214 (214)
T KOG0086|consen 162 AFLKCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPCGC 214 (214)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCCCC
Confidence 99999999999999999999888777666666666677777777777776555
No 11
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3e-36 Score=231.40 Aligned_cols=195 Identities=35% Similarity=0.624 Sum_probs=164.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+..+ +..+.+.+|||+|++.|..++..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988888998888877777777 7889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHA----DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAF 171 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~f 171 (225)
||++++.+++.+..|+..+.... ..+.|++||+||+|+.+.+....+++..+++..+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886543 2578999999999998656778888999999998 679999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCc
Q 027292 172 MTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223 (225)
Q Consensus 172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 223 (225)
++|++.+.+..+......+.. ...-+...+.+++++.+ +||
T Consensus 161 ~~l~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAETPE---------DGSVIDLKQTTTKKKSK--GCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhcCCC---------cccccccccceeccccC--CCC
Confidence 999999987654444333322 13445555656655555 588
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.8e-36 Score=226.92 Aligned_cols=169 Identities=37% Similarity=0.674 Sum_probs=155.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
.++.+||+|+|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999988888888888888777788888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
|+|||++++.+++.+..|+..+..... +.|++||+||.|+.+.+.+..++++.+++..++.|+++||++|.||+++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 999999999999999999999977654 8999999999999877788889999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027292 174 VLTEIFNIVN 183 (225)
Q Consensus 174 l~~~~~~~~~ 183 (225)
+++.+.....
T Consensus 162 l~~~i~~~~~ 171 (189)
T cd04121 162 LARIVLMRHG 171 (189)
T ss_pred HHHHHHHhcC
Confidence 9998876533
No 13
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=6.5e-37 Score=220.75 Aligned_cols=172 Identities=36% Similarity=0.688 Sum_probs=160.7
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
.+...+||+++|++|+|||||++++.+..|...+..+++.++..+.+.+++..+.++||||+|+++|.++...+++.+|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCC--CCCCCHHHHHHHHHHcC-CeEEEeccCCCC
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEE--QRAVPTEDAKEFAQKEG-LFFLETSALEAT 165 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 165 (225)
+++|||++++.+++.+..|..++..+.. ...|+||++||+|+.+ .++++...++.|++..| ++|||+||++..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999887775 4689999999999976 37889999999998876 889999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 027292 166 NVENAFMTVLTEIFNIVNK 184 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~~~~ 184 (225)
||.++|+.+.+.+++.-..
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999999987543
No 14
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-36 Score=210.71 Aligned_cols=182 Identities=38% Similarity=0.745 Sum_probs=172.0
Q ss_pred CCCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 027292 4 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVT 83 (225)
Q Consensus 4 ~~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 83 (225)
++...+..+.-++.+|++|+|...+|||||+.++++..+...+..+.|+++..+++......+.+++|||.|+|.|+.+.
T Consensus 8 ~~~~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiT 87 (193)
T KOG0093|consen 8 GASKDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTIT 87 (193)
T ss_pred CCccccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHH
Confidence 45566777788899999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292 84 SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE 163 (225)
Q Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (225)
..++++++++|++||+++.+++..+..|...++.++-.+.|+|+|+||||+.+++.++.+..+.+++++|+.|||+||+.
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~ 167 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKE 167 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccc
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhc
Q 027292 164 ATNVENAFMTVLTEIFNIVNKK 185 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~~~~~~~~ 185 (225)
+.+|.++|+.++..+.+.+.+.
T Consensus 168 NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 168 NINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred cccHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999998887654
No 15
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=4.7e-35 Score=224.38 Aligned_cols=197 Identities=42% Similarity=0.681 Sum_probs=166.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
.++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++.+|++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 35689999999999999999999999998888888888888777777788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
|+|||++++++++.+..|+..+..... ..|++||+||+|+.+......++...++...+++++++||++|.|+.++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 999999999999999999999877654 7899999999999876667778888899888999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCc
Q 027292 174 VLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223 (225)
Q Consensus 174 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 223 (225)
|.+.++....+.....+...+ .-....++..+++.+||
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 162 ITELVLRAKKDNLAKQQQQQQ------------NDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHHhhhccCcccccCCc------------cccCccchhccccccCC
Confidence 999998776555333332221 11234455556677798
No 16
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-36 Score=211.17 Aligned_cols=208 Identities=39% Similarity=0.711 Sum_probs=183.0
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
..+..+||+++|..|+|||.|+++|..+-|++....+.+.++..+++.++++.+++++|||+|+++|+++...+++.+|+
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
+|+|||++...+|+-+.+|+.++.++.+.++--|+|+||+|+.+.+++.....++|+......|.++||++-.+|+.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999999988888999999999999889998999999999889999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCcC
Q 027292 173 TVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 224 (225)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 224 (225)
.+.-.+....+..........+..+++ ..|++|.+.--.|.+ ..-||+
T Consensus 163 ~~a~rli~~ar~~d~v~~~~a~a~~~~-seg~si~l~s~aqt~---~~~cc~ 210 (213)
T KOG0095|consen 163 DLACRLISEARQNDLVNNVSAPAPNSS-SEGKSIKLISYAQTQ---LLTCCN 210 (213)
T ss_pred HHHHHHHHHHHhccchhhccccCcccc-CCCCcccchhHHHHH---Hhcccc
Confidence 998888877776666554444444333 567777666544433 334664
No 17
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-34 Score=223.81 Aligned_cols=207 Identities=41% Similarity=0.722 Sum_probs=167.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
.+||+|+|++|||||||+++|+++.+...+.++.+.++....+.. ++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998888888888887777766 4667899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
|||++++++++.+..|+..+.+... ...|++||+||+|+.+.+.+..++...+++.+++.++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999876653 457889999999998777788888999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCCCCCCCCceeec-CCCCCCCCCCCCCCc
Q 027292 175 LTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILV-PGPAQEIPAKSSMCC 223 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~cc 223 (225)
++.+.+.....+.....+.........-+.-.-+ .-++.--.+.+++||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T cd04111 162 TQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211 (211)
T ss_pred HHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence 9999888766654333333222222222221112 234444556677787
No 18
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.9e-35 Score=223.96 Aligned_cols=185 Identities=30% Similarity=0.514 Sum_probs=156.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
||+|+|.+|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+|||+|++.|..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999988877777766444 3455677888899999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 99 ISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+..+++..++++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988876543 4789999999999977677777788888888999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCc
Q 027292 176 TEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 223 (225)
+.+..++.... .+...+++++++++++||
T Consensus 160 ~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 160 RALRQQRQGGQ-------------------GPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHhhcccC-------------------CCcCCCCCcccccccCce
Confidence 98876654421 113456677777887787
No 19
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=209.95 Aligned_cols=169 Identities=48% Similarity=0.799 Sum_probs=162.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
.+..++.+|+|++|+|||+|+.+|....|..+|..++|.++...++.+++..+.++||||+|++.|+.+...+++..+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
++|||+++.++|....+|+.++.+.+. .+|-++|+||.|.++.+.+..++++.|+.+.++.+||+|+++..+++..|+-
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 999999999999999999999999887 7899999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027292 174 VLTEIFNIVN 183 (225)
Q Consensus 174 l~~~~~~~~~ 183 (225)
|.+++++...
T Consensus 164 it~qvl~~k~ 173 (198)
T KOG0079|consen 164 ITKQVLQAKL 173 (198)
T ss_pred HHHHHHHHHH
Confidence 9999998873
No 20
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=6.1e-35 Score=225.75 Aligned_cols=187 Identities=33% Similarity=0.537 Sum_probs=153.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|.+|||||||+++|..+.+.. +.++.+.++.... ...+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 4666665544332 25678999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE-------------------QRAVPTEDAKEFAQKEG----- 153 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 153 (225)
|++++++++.+..|+..+.+....+.|++||+||+|+.+ .+.+..+++..++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888888776556799999999999965 46778889999998876
Q ss_pred ---------CeEEEeccCCCCCHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCc
Q 027292 154 ---------LFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 223 (225)
Q Consensus 154 ---------~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 223 (225)
++|+|+||++|.||+++|..+++.++....++.......+ . ...-.+++.+|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQ---G-----------TVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhh---c-----------cccCCCcccCCCCCC
Confidence 6799999999999999999999999988776655332221 0 111223677888899
No 21
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-34 Score=218.70 Aligned_cols=168 Identities=43% Similarity=0.784 Sum_probs=152.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998778888888887777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
|++++.+++.+..|+..+......+.|+++|+||+|+.+...+..+....+++..+++++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766678999999999998767777888888888889999999999999999999999999
Q ss_pred HHHHHhhc
Q 027292 178 IFNIVNKK 185 (225)
Q Consensus 178 ~~~~~~~~ 185 (225)
+.++....
T Consensus 161 ~~~~~~~~ 168 (188)
T cd04125 161 IIKRLEEQ 168 (188)
T ss_pred HHHHhhcC
Confidence 98764433
No 22
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.7e-34 Score=221.58 Aligned_cols=168 Identities=26% Similarity=0.459 Sum_probs=149.4
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
.....+||+|+|+.|||||+|+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 3456799999999999999999999999999999899876654 456778899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEE
Q 027292 93 AMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFLE 158 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 158 (225)
+|+|||+++.++++. +..|+..+..... +.|++||+||+|+.+ .+.+..++++++++++++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 4899999987664 789999999999964 256788899999999998 5999
Q ss_pred eccCCCC-CHHHHHHHHHHHHHHHH
Q 027292 159 TSALEAT-NVENAFMTVLTEIFNIV 182 (225)
Q Consensus 159 ~Sa~~~~-~v~~~f~~l~~~~~~~~ 182 (225)
|||++|. +|+++|..++..+++..
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHhc
Confidence 9999997 89999999999887643
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.7e-34 Score=214.06 Aligned_cols=164 Identities=52% Similarity=0.903 Sum_probs=151.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+||+++|++|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999888888888888777778888899999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
||++++.+++.+..|+..+......+.|+++|+||+|+...+....+++.++++..+++++++||++|.|+.++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776668999999999999877777888899999999999999999999999999999998
Q ss_pred HHHH
Q 027292 177 EIFN 180 (225)
Q Consensus 177 ~~~~ 180 (225)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8764
No 24
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=3.7e-34 Score=213.52 Aligned_cols=166 Identities=48% Similarity=0.864 Sum_probs=152.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
++.+||+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999999999888999888887777888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..++..++++++++||++|.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766689999999999998766777888888999999999999999999999999999
Q ss_pred HHHHHH
Q 027292 175 LTEIFN 180 (225)
Q Consensus 175 ~~~~~~ 180 (225)
.+.++.
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998865
No 25
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=207.91 Aligned_cols=209 Identities=32% Similarity=0.619 Sum_probs=183.4
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
..+...+||+++|..=+|||||+-+++.+.|......+....+..+.+.+.+....+.||||+|+++|.++-+.|++..|
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 45678899999999999999999999999998888888888888888888889999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
++++|||+++.++|+.+..|..+++......+.+++|+||+|+.+++.+..+++...+..-|+.|+++||+++.|+.++|
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELF 167 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecC-CCCCCCCCCCCCCcC
Q 027292 172 MTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVP-GPAQEIPAKSSMCCR 224 (225)
Q Consensus 172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~cc~ 224 (225)
+.+...++++..+.+....+.+....+... .+.+. .+++-...++ +||+
T Consensus 168 e~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r---~~~~iD~e~~a~~sg~-~CC~ 217 (218)
T KOG0088|consen 168 ESLTAKMIEHSSQRQRTRSPLSTQPPSTNR---SIRLIDNEAEAERSGK-RCCR 217 (218)
T ss_pred HHHHHHHHHHhhhcccccCCcCCCCCCccc---chhccCCCcccccccC-CccC
Confidence 999999999998887777666544444443 34444 3334444443 4997
No 26
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=4.6e-34 Score=221.38 Aligned_cols=164 Identities=33% Similarity=0.591 Sum_probs=149.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999988888877777754 578999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
||++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999887653 35789999999999876778888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027292 174 VLTEIFNI 181 (225)
Q Consensus 174 l~~~~~~~ 181 (225)
+++.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998865
No 27
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.5e-34 Score=217.15 Aligned_cols=164 Identities=46% Similarity=0.774 Sum_probs=147.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
+||+|+|++|||||||+++|.++.+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988764 5667766677666677888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..++...++..++++|+++||++|.|++++|++|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998877668999999999999766677778888999999999999999999999999999999
Q ss_pred HHHHH
Q 027292 177 EIFNI 181 (225)
Q Consensus 177 ~~~~~ 181 (225)
.+...
T Consensus 161 ~~~~~ 165 (191)
T cd04112 161 ELKHR 165 (191)
T ss_pred HHHHh
Confidence 98765
No 28
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.8e-35 Score=205.46 Aligned_cols=179 Identities=42% Similarity=0.784 Sum_probs=164.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-QHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
-.+-++.+|+|++-+|||+|+++|..+.+..-.+||.+.+++...+.. ++..+++++|||+|+++|+++...++++.-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 356799999999999999999999999999999999999999888775 5788999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA 170 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 170 (225)
+++|||+++.++|+.+..|+.+..-+.. .++.+.||++|+|+...+++..++++++++..|+.|+|+|+++|.||++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999988665543 34557899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCC
Q 027292 171 FMTVLTEIFNIVNKKNLTAGEG 192 (225)
Q Consensus 171 f~~l~~~~~~~~~~~~~~~~~~ 192 (225)
|..+.+.+.....+.+.+...+
T Consensus 165 F~mlaqeIf~~i~qGeik~edg 186 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLEDG 186 (213)
T ss_pred HHHHHHHHHHHHhcCceeeeec
Confidence 9999999999999877766553
No 29
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=216.36 Aligned_cols=170 Identities=50% Similarity=0.908 Sum_probs=155.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999888888888888888777888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+++++.++++++++||+++.|++++|+++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998877766689999999999998777788888999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 027292 175 LTEIFNIVNK 184 (225)
Q Consensus 175 ~~~~~~~~~~ 184 (225)
++.+++...+
T Consensus 164 ~~~~~~~~~~ 173 (210)
T PLN03108 164 AAKIYKKIQD 173 (210)
T ss_pred HHHHHHHhhh
Confidence 9999876553
No 30
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.5e-34 Score=215.52 Aligned_cols=164 Identities=28% Similarity=0.525 Sum_probs=146.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
.+..+||+++|+.|||||||++++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|++.|..++..+++.+|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 35678999999999999999999999999888888877555 35667788999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEe
Q 027292 94 MLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFLET 159 (225)
Q Consensus 94 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 159 (225)
|+|||++++.+++.+ ..|+..+.+... +.|++||+||+|+.+ .+.+..++++++++++++ +|+||
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 899999988764 799999999999964 245888999999999996 89999
Q ss_pred ccCCCCC-HHHHHHHHHHHHH
Q 027292 160 SALEATN-VENAFMTVLTEIF 179 (225)
Q Consensus 160 Sa~~~~~-v~~~f~~l~~~~~ 179 (225)
||++|.| |+++|+.+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999998654
No 31
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=4.5e-34 Score=214.32 Aligned_cols=161 Identities=31% Similarity=0.582 Sum_probs=144.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+||+++|++|+|||||+.++..+.+...+.+|.+..+ ...+..++..+.+.+|||+|++.|..++..+++.+|++|+|
T Consensus 1 ~~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 1 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 37999999999999999999999999888889887655 44566788899999999999999999999999999999999
Q ss_pred EeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCC----------CCCHHHHHHHHHHcCC-eEEEeccCCC
Q 027292 97 YDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQR----------AVPTEDAKEFAQKEGL-FFLETSALEA 164 (225)
Q Consensus 97 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 164 (225)
||++++++++.+ ..|+..+..... +.|++||+||+|+.+.+ .+..++++.+++..++ .|+|+||++|
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 999999999998 689999987654 79999999999996532 4778889999999998 5999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTEIF 179 (225)
Q Consensus 165 ~~v~~~f~~l~~~~~ 179 (225)
.||+++|+.+++.++
T Consensus 159 ~nV~~~F~~~~~~~~ 173 (176)
T cd04133 159 QNVKAVFDAAIKVVL 173 (176)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998764
No 32
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=7.1e-34 Score=216.18 Aligned_cols=165 Identities=36% Similarity=0.588 Sum_probs=146.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|..++..+++.+|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999988877777766554 4566678888999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
|||+++.++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|+.++|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999998877643 478999999999997766677777888888889999999999999999999999
Q ss_pred HHHHHHH
Q 027292 175 LTEIFNI 181 (225)
Q Consensus 175 ~~~~~~~ 181 (225)
++.+.+.
T Consensus 163 ~~~l~~~ 169 (189)
T PTZ00369 163 VREIRKY 169 (189)
T ss_pred HHHHHHH
Confidence 9988754
No 33
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.8e-33 Score=216.66 Aligned_cols=164 Identities=23% Similarity=0.472 Sum_probs=143.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|+.|||||||+++|..+.+...+.|+.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999889998876654 46677889999999999999999999999999999999999
Q ss_pred eCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292 98 DISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSALE 163 (225)
Q Consensus 98 d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 163 (225)
|++++++++.+ ..|...+.... .+.|++||+||+|+.+. ..+..++...++++.++ .|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999998 56877766554 47999999999999642 13667889999999996 799999999
Q ss_pred CCC-HHHHHHHHHHHHHHHHh
Q 027292 164 ATN-VENAFMTVLTEIFNIVN 183 (225)
Q Consensus 164 ~~~-v~~~f~~l~~~~~~~~~ 183 (225)
+.+ |+++|+.++..++....
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 985 99999999998776544
No 34
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.6e-33 Score=208.56 Aligned_cols=163 Identities=42% Similarity=0.779 Sum_probs=148.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887777777777788899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
|+++.++++.+..|+..+......+.|+++|+||+|+.+.+....++..+++..++++++++||+++.|+.++|+++.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766689999999999998766777788888888899999999999999999999999887
Q ss_pred HHH
Q 027292 178 IFN 180 (225)
Q Consensus 178 ~~~ 180 (225)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 643
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.9e-33 Score=208.51 Aligned_cols=160 Identities=44% Similarity=0.765 Sum_probs=147.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
++|+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888887777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
|+++.++++.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++|+++||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887766679999999999998777778888999999999999999999999999999999865
No 36
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.1e-33 Score=210.41 Aligned_cols=163 Identities=30% Similarity=0.501 Sum_probs=146.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+||+|+|.+|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||+|++.|..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999888888876444 34566778889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..++...+++.++++|+++||++|.|++++|++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999988887754 35799999999999987777888889999999999999999999999999999999
Q ss_pred HHHHH
Q 027292 176 TEIFN 180 (225)
Q Consensus 176 ~~~~~ 180 (225)
+.+.+
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 88776
No 37
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.6e-33 Score=207.89 Aligned_cols=163 Identities=51% Similarity=0.861 Sum_probs=149.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
++||+|+|++|||||||++++.++.+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999998888888888888877788888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
||+++++++..+..|+..+......+.|+++|+||+|+.....+..+++..++..++++++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998776567999999999999876777778889999999999999999999999999999998
Q ss_pred HHH
Q 027292 177 EIF 179 (225)
Q Consensus 177 ~~~ 179 (225)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 38
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.3e-33 Score=210.74 Aligned_cols=167 Identities=41% Similarity=0.738 Sum_probs=149.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC----------CEEEEEEEEeCCCchhhhhhhH
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ----------HKSVKAQIWDTAGQERYRAVTS 84 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~ 84 (225)
++.+||+++|++|||||||++++..+.+...+.++.+.++....+.+. +..+.+.+|||||++.+..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999988888888877776666543 4568899999999999999999
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE 163 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (225)
.+++.+|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.++++..+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999987764 34789999999999987677788889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~~~~ 181 (225)
|.|++++|++|++.++++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999988764
No 39
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=212.85 Aligned_cols=201 Identities=37% Similarity=0.659 Sum_probs=159.3
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
...+..+||+|+|.+|||||||+++|+++.+. .+.++.+.++....+..++..+.+.+|||||++.|..++..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 34556899999999999999999999998774 56677777777777777788899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHH-HHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292 92 GAMLVYDISRRQSFDHIPR-WLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN 169 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 169 (225)
++|+|||+++.++++.+.. |...+.... ..+.|+++|+||+|+...+....++...++...++.|+++||+++.|+++
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999865 666655443 24689999999999987666777788888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCcC
Q 027292 170 AFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 224 (225)
Q Consensus 170 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 224 (225)
+|++|.+.+.+.....+..... -+.-.+.....++++.+++|||
T Consensus 168 l~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T PLN03118 168 CFEELALKIMEVPSLLEEGSTA-----------VKRNILKQKPEHQPPPNGGCCS 211 (211)
T ss_pred HHHHHHHHHHhhhhhhhccccc-----------ccccccccccccCCCCcCCCCC
Confidence 9999999997653221111111 0111223444556678888996
No 40
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-33 Score=211.40 Aligned_cols=160 Identities=26% Similarity=0.521 Sum_probs=143.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|+.|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 79999999999999999999999998888888766553 56677889999999999999999999999999999999999
Q ss_pred eCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292 98 DISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFLETSALE 163 (225)
Q Consensus 98 d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 163 (225)
|++++++++.+ ..|+..+.+... +.|++||+||+|+.+ .+.+..++++++++.+++ .|+++||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999996 899999988764 799999999999964 245788899999999997 799999999
Q ss_pred CCC-HHHHHHHHHHHHH
Q 027292 164 ATN-VENAFMTVLTEIF 179 (225)
Q Consensus 164 ~~~-v~~~f~~l~~~~~ 179 (225)
|++ |+++|..+++..+
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998655
No 41
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=4.2e-33 Score=206.63 Aligned_cols=161 Identities=37% Similarity=0.733 Sum_probs=153.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
||+|+|+.|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.|..++..++..+|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 99 ISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
++++++++.+..|+..+......+.|++|++||.|+.+.+.+..++++.++++++++|+++|++++.++.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988886799999999999988788999999999999999999999999999999999999987
Q ss_pred H
Q 027292 179 F 179 (225)
Q Consensus 179 ~ 179 (225)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 6
No 42
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=7.1e-33 Score=206.82 Aligned_cols=166 Identities=51% Similarity=0.919 Sum_probs=152.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
++++||+|+|.+|+|||||++++.+..+...+.++.+.++....+..++....+.+|||+|++.+..+...+++.+|++|
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 56799999999999999999999999988888888888888778888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||++++.+++.+..|+..+......+.|+++|+||.|+.+......++.+.++...++.++++||+++.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766689999999999998666777888888999999999999999999999999999
Q ss_pred HHHHHH
Q 027292 175 LTEIFN 180 (225)
Q Consensus 175 ~~~~~~ 180 (225)
.+.+++
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988764
No 43
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.9e-33 Score=211.84 Aligned_cols=162 Identities=27% Similarity=0.527 Sum_probs=142.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+||+++|+.|||||||+.++..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..++..+++.+|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 489999999999999999999999998888888775543 4456778889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEeccC
Q 027292 97 YDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQR------------AVPTEDAKEFAQKEG-LFFLETSAL 162 (225)
Q Consensus 97 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 162 (225)
||++++.+++.+. .|+..+..... +.|++||+||.|+.+.. .+..++++.+++.++ +.|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 68888876544 79999999999996532 356678889999998 589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLTEIFN 180 (225)
Q Consensus 163 ~~~~v~~~f~~l~~~~~~ 180 (225)
+|.||+++|+++++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988754
No 44
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=5.8e-33 Score=206.66 Aligned_cols=162 Identities=33% Similarity=0.676 Sum_probs=148.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998889999888888888888889999999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHAD-----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+......++.+.++...+++++++||+++.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999887654 4699999999999976566778888888888899999999999999999999
Q ss_pred HHHHHHH
Q 027292 173 TVLTEIF 179 (225)
Q Consensus 173 ~l~~~~~ 179 (225)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=8.7e-33 Score=205.58 Aligned_cols=163 Identities=71% Similarity=1.143 Sum_probs=149.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..+||+|+|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 56899999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
|||++++.+++.+..|+..+.+....+.|+++|+||+|+...+....++...++...+++++++||++|.|++++|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999888766799999999999987677778888888888899999999999999999999998
Q ss_pred HHH
Q 027292 176 TEI 178 (225)
Q Consensus 176 ~~~ 178 (225)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 46
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-32 Score=205.01 Aligned_cols=163 Identities=53% Similarity=0.886 Sum_probs=147.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
++.+||+|+|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 35799999999999999999999999988888888877777777878888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVENAFMT 173 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~f~~ 173 (225)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..+++..++ .++++||++|.|++++|++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999876666899999999999987777777888899988886 5899999999999999999
Q ss_pred HHHH
Q 027292 174 VLTE 177 (225)
Q Consensus 174 l~~~ 177 (225)
+.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9865
No 47
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=6.8e-33 Score=208.23 Aligned_cols=160 Identities=24% Similarity=0.479 Sum_probs=140.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
++||+|+|.+|||||||+++|..+.+...+.|+.+..+. ..+..++..+.+.+|||+|++.|..++..+++.+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998888888766554 3566778889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEeccC
Q 027292 97 YDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEG-LFFLETSAL 162 (225)
Q Consensus 97 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 162 (225)
||++++++++.+. .|+..+..... +.|++||+||+|+.+. +.+..+++++++++.+ +.|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999986 59888876653 7999999999998643 4567778888998887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLTEI 178 (225)
Q Consensus 163 ~~~~v~~~f~~l~~~~ 178 (225)
+|.|++++|+.+++.+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999865
No 48
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.2e-32 Score=207.72 Aligned_cols=164 Identities=36% Similarity=0.637 Sum_probs=143.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
+||+|+|++|+|||||+++|+++.+.. .+.++.+..+....+..++..+.+.+||++|++.+..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998875 5777777777777788888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ----RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
||+++..+++.+..|+..+.... .+.|+++|+||+|+.+. ..+..+++..++...++.++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999887754 37999999999998532 34455667788888889999999999999999999
Q ss_pred HHHHHHHHHH
Q 027292 173 TVLTEIFNIV 182 (225)
Q Consensus 173 ~l~~~~~~~~ 182 (225)
++.+.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999997654
No 49
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.1e-32 Score=208.14 Aligned_cols=163 Identities=27% Similarity=0.543 Sum_probs=143.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|+.|||||||+++|..+.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999888888778888888999999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-----CCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE-----QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
|++++.+++.+..|+..+........| ++|+||+|+.. ......++.+.+++..+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998876555667 67899999952 111224567778888899999999999999999999
Q ss_pred HHHHHHHHH
Q 027292 173 TVLTEIFNI 181 (225)
Q Consensus 173 ~l~~~~~~~ 181 (225)
++.+.+++.
T Consensus 160 ~l~~~l~~~ 168 (182)
T cd04128 160 IVLAKAFDL 168 (182)
T ss_pred HHHHHHHhc
Confidence 999988753
No 50
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.5e-32 Score=213.29 Aligned_cols=164 Identities=30% Similarity=0.562 Sum_probs=146.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...+||+|+|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67899999999999999999999999998888999888888777777778899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||+++..+++.+..|+..+..... +.|++||+||+|+.. ..+..+++ .+++..++.|+++||++|.|++++|++|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 99999999999999999999987654 799999999999964 34444545 6777788999999999999999999999
Q ss_pred HHHHHHH
Q 027292 175 LTEIFNI 181 (225)
Q Consensus 175 ~~~~~~~ 181 (225)
++.+++.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9988654
No 51
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.1e-32 Score=207.66 Aligned_cols=166 Identities=29% Similarity=0.500 Sum_probs=142.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
+||+|+|++|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999988887776655543 34444 6788999999999999999999999999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHH
Q 027292 97 YDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ----RAVPTEDAKEFAQKEGL-FFLETSALEATNVENA 170 (225)
Q Consensus 97 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~ 170 (225)
||+++..+++.+. .|+..+.... .+.|+++|+||.|+... +.+..++.++++..+++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999985 5888776554 47999999999999653 24567788899999998 8999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 027292 171 FMTVLTEIFNIVNKK 185 (225)
Q Consensus 171 f~~l~~~~~~~~~~~ 185 (225)
|+.+++.++......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999998775544
No 52
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3e-32 Score=201.91 Aligned_cols=160 Identities=56% Similarity=0.914 Sum_probs=147.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
|+++..++..+..|+..+......+.|+++|+||.|+.+.+....+++..+++..++.++++||+++.|+.++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999887776789999999999998767778888999999999999999999999999999999875
No 53
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-32 Score=188.14 Aligned_cols=183 Identities=48% Similarity=0.841 Sum_probs=171.8
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
-...+.+|.+++|+-|+|||.|++.|....|...-+.+.+.++....+.+.+..+.+++|||.|+++|+.....+++.+.
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
+.++|||++...++..+..|+...+...+++..+++++||.|+...+.+..+++.+|+.+.|+.|.++|+++|.+|++.|
T Consensus 86 galmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred ceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCC
Q 027292 172 MTVLTEIFNIVNKKNLTAGEGQG 194 (225)
Q Consensus 172 ~~l~~~~~~~~~~~~~~~~~~~~ 194 (225)
-...+.+++..++.-.+.-...+
T Consensus 166 le~akkiyqniqdgsldlnaaes 188 (215)
T KOG0097|consen 166 LETAKKIYQNIQDGSLDLNAAES 188 (215)
T ss_pred HHHHHHHHHhhhcCcccccchhc
Confidence 99999999998877766554443
No 54
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.8e-32 Score=203.25 Aligned_cols=160 Identities=32% Similarity=0.556 Sum_probs=141.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.|..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777765 444556677888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
|+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+....++...+++.++++++++||+++.|+.++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999998877643 57999999999999766666777778888888899999999999999999999987
Q ss_pred HH
Q 027292 177 EI 178 (225)
Q Consensus 177 ~~ 178 (225)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 64
No 55
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=9.2e-32 Score=201.17 Aligned_cols=163 Identities=34% Similarity=0.648 Sum_probs=144.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++.|..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998999998888887778888888999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 99 ISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+... ...+++..++++++++++++||++|.|+.++|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999886554 34578999999999965432 345667788888899999999999999999999999
Q ss_pred HHHHHH
Q 027292 176 TEIFNI 181 (225)
Q Consensus 176 ~~~~~~ 181 (225)
+.+.+.
T Consensus 162 ~~~~~~ 167 (170)
T cd04108 162 ALTFEL 167 (170)
T ss_pred HHHHHc
Confidence 988664
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=8e-32 Score=199.67 Aligned_cols=159 Identities=35% Similarity=0.667 Sum_probs=143.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC--CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ--HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
+||+|+|.+|+|||||++++.++.+...+.++.+.++....+.+. +..+.+.+|||||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998888888888888776666666 678899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
|||++++++++.+..|+..+..... +.|+++|+||+|+.....+..+++..+++..+++++++|++++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999876554 799999999999987667777888899999999999999999999999999987
Q ss_pred HH
Q 027292 176 TE 177 (225)
Q Consensus 176 ~~ 177 (225)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 57
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=4.8e-32 Score=201.41 Aligned_cols=161 Identities=30% Similarity=0.539 Sum_probs=141.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|.+|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6999999999999999999999888777777766544 355667788899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
|+++..+++.+..|+..+.... ..+.|+++|+||+|+.+......++...+++.++++++++||+++.|++++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999999887654 357999999999999876666667778888888999999999999999999999987
Q ss_pred HHH
Q 027292 177 EIF 179 (225)
Q Consensus 177 ~~~ 179 (225)
.+.
T Consensus 161 ~l~ 163 (164)
T cd04175 161 QIN 163 (164)
T ss_pred Hhh
Confidence 653
No 58
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.2e-31 Score=198.91 Aligned_cols=163 Identities=59% Similarity=0.967 Sum_probs=149.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
|++++.+++.+..|+..+......+.|+++|+||+|+...+....+.+++++...+++++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888776689999999999998766677788888999999999999999999999999999988
Q ss_pred HHH
Q 027292 178 IFN 180 (225)
Q Consensus 178 ~~~ 180 (225)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.3e-31 Score=200.15 Aligned_cols=163 Identities=39% Similarity=0.688 Sum_probs=145.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
+...+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999998888888878777777777888999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVE 168 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 168 (225)
|+|||+++.++++.+..|+..+..... .+.|+++|+||+|+.. +....+++++++++.+. +++++||++|.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-cccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 999999999999999999988876542 4689999999999973 56677888999988884 79999999999999
Q ss_pred HHHHHHHHH
Q 027292 169 NAFMTVLTE 177 (225)
Q Consensus 169 ~~f~~l~~~ 177 (225)
++|+++++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999875
No 60
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=9e-32 Score=200.50 Aligned_cols=161 Identities=32% Similarity=0.615 Sum_probs=142.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888888888887777777777788899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
|+++.++++.+..|+..+..... +.|+++|+||+|+.+ +... .....++...++.++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999988776 899999999999974 3333 33456667778899999999999999999999999
Q ss_pred HHHH
Q 027292 178 IFNI 181 (225)
Q Consensus 178 ~~~~ 181 (225)
+++.
T Consensus 158 ~~~~ 161 (166)
T cd00877 158 LLGN 161 (166)
T ss_pred HHhc
Confidence 8753
No 61
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=9.4e-32 Score=199.60 Aligned_cols=161 Identities=29% Similarity=0.526 Sum_probs=141.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+||+++|.+|+|||||+++++.+.+...+.++.+ ++....+..++..+.+.+|||||++.|..++..+++.+|++|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999998877777654 45556677788888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
||+++..+++.+..|+..+.+... .+.|+++|+||+|+.+...+...+...++..++++++++||+++.|+.++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877643 5799999999999976566666677888888889999999999999999999998
Q ss_pred HHH
Q 027292 176 TEI 178 (225)
Q Consensus 176 ~~~ 178 (225)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 62
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.5e-31 Score=198.38 Aligned_cols=160 Identities=32% Similarity=0.584 Sum_probs=140.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|.+|||||||++++..+.+...+.++.+.+........++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988887777666766666777888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
|++++.+++.+..|+..+..... +.|+++|+||+|+... ...+...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999876543 7899999999998532 2344556677778999999999999999999999998
Q ss_pred HHHH
Q 027292 178 IFNI 181 (225)
Q Consensus 178 ~~~~ 181 (225)
++++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8765
No 63
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.3e-31 Score=203.63 Aligned_cols=161 Identities=29% Similarity=0.513 Sum_probs=138.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
.||+|+|++|||||||+++|..+.+...+.++.+..+. ..+..++..+.+.+|||+|++.|..++..++..+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998888888665543 44556778899999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEeccCC
Q 027292 98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQR------------AVPTEDAKEFAQKEG-LFFLETSALE 163 (225)
Q Consensus 98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 163 (225)
|++++.+++.+. .|+..+..... +.|++||+||+|+.+.. .+..++...++...+ +.|+++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999885 69988887654 79999999999996533 245566777887777 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTEIFN 180 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~~~ 180 (225)
|.|++++|.++++.++.
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998873
No 64
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.5e-31 Score=199.13 Aligned_cols=159 Identities=27% Similarity=0.422 Sum_probs=138.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|.+|||||||++++.++.+...+.++.+..+ ...+..+...+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999998777777765443 344556678889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
|+++.++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+++..++..+++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999888776542 479999999999997766677777888888889999999999999999999999
Q ss_pred HHH
Q 027292 175 LTE 177 (225)
Q Consensus 175 ~~~ 177 (225)
++.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 65
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.3e-31 Score=201.05 Aligned_cols=158 Identities=28% Similarity=0.504 Sum_probs=138.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|.+|||||||+.++..+.+...+.++... .....+.+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 69999999999999999999999998888888653 33445667888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292 98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSALE 163 (225)
Q Consensus 98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 163 (225)
|++++++++.+. .|+..+..... +.|++||+||+|+.+. +.+..+++.++++.++. .|+++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 69888876654 7999999999999642 24677888999999985 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTE 177 (225)
Q Consensus 164 ~~~v~~~f~~l~~~ 177 (225)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998864
No 66
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=3.9e-31 Score=196.15 Aligned_cols=162 Identities=49% Similarity=0.865 Sum_probs=148.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+||+|+|++|+|||||++++++..+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998887888888778788888888999999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
+|++++++++.+..|+..+......+.|+++++||+|+........++...++...++.++++||++|.|+.++|++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998877668999999999999865667777888889888999999999999999999999988
Q ss_pred HH
Q 027292 177 EI 178 (225)
Q Consensus 177 ~~ 178 (225)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 67
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.1e-31 Score=196.33 Aligned_cols=160 Identities=39% Similarity=0.772 Sum_probs=146.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|++|||||||++++++..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
|++++++++.+..|+..+......+.|+++++||+|+.+......++...+++..++.++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877665579999999999996656677788888888889999999999999999999999864
No 68
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2.2e-31 Score=197.77 Aligned_cols=161 Identities=40% Similarity=0.623 Sum_probs=140.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|++|||||||++++.+..+...+.++.+ +........++..+.+.+|||||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999988777777655 333455667778899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
|++++++++.+..|+..+.+... .+.|+++|+||+|+...+....+.+..+++..+++++++||+++.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888776543 47899999999999876666777888888889999999999999999999999988
Q ss_pred HHH
Q 027292 177 EIF 179 (225)
Q Consensus 177 ~~~ 179 (225)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 654
No 69
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=4.5e-31 Score=197.44 Aligned_cols=162 Identities=43% Similarity=0.766 Sum_probs=146.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-hhhHhhhcCCCEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-AVTSAYYRGAVGAML 95 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~i~ 95 (225)
.++|+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+. .++..+++.+|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999888888888888877778888888999999999999886 578889999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC---CCCHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE---ATNVENAF 171 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~f 171 (225)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++|+++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887765 35799999999999987777788888899999999999999999 88999999
Q ss_pred HHHHHHH
Q 027292 172 MTVLTEI 178 (225)
Q Consensus 172 ~~l~~~~ 178 (225)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=4.3e-31 Score=195.39 Aligned_cols=160 Identities=34% Similarity=0.594 Sum_probs=139.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999988777777765443 45566777888899999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
||+++..+++.+..|+..+.+... .+.|+++|+||+|+.+ +.....++..+++..+++++++||++|.|++++|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988877653 5789999999999976 45566778888888899999999999999999999998
Q ss_pred HHH
Q 027292 176 TEI 178 (225)
Q Consensus 176 ~~~ 178 (225)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 71
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=4.2e-31 Score=196.10 Aligned_cols=161 Identities=34% Similarity=0.541 Sum_probs=140.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+||+++|.+|+|||||++++++..+...+.++.+.. .......++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 5899999999999999999999988776666665533 344456778888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
||+++..+++.+..|+..+.... ..+.|+++|+||+|+...+....++..++++..+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887654 35789999999999987666677778888888889999999999999999999998
Q ss_pred HHH
Q 027292 176 TEI 178 (225)
Q Consensus 176 ~~~ 178 (225)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 754
No 72
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=4.7e-31 Score=201.56 Aligned_cols=156 Identities=29% Similarity=0.579 Sum_probs=140.3
Q ss_pred EcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh
Q 027292 23 IGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR 102 (225)
Q Consensus 23 lG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (225)
+|..|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++.+|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999998888889988888888888888899999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292 103 QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 103 ~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
.+++.+..|+..+.+... +.|++||+||+|+.. +.+..+. ..+++..++.|+++||++|.|+.++|++|++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999988764 899999999999965 3444443 467788889999999999999999999999988654
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.5e-31 Score=202.44 Aligned_cols=164 Identities=23% Similarity=0.300 Sum_probs=137.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA--------VTSAYYRG 89 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 89 (225)
+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+|||||.+.+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888877666666677788889999999999654321 12345789
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEeccCCCC
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHA---DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-KEGLFFLETSALEAT 165 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 165 (225)
+|++|+|||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+...+....++.+.++. .++++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999999887764 3579999999999997666666666777654 568999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTEIFNI 181 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~ 181 (225)
|++++|+.+++.++.+
T Consensus 161 ~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 161 HILLLFKELLISATTR 176 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999888744
No 74
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-33 Score=197.03 Aligned_cols=175 Identities=38% Similarity=0.689 Sum_probs=159.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC---------CEEEEEEEEeCCCchhhhhhhH
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ---------HKSVKAQIWDTAGQERYRAVTS 84 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~ 84 (225)
.++.++.+.+|++|+|||+|+.++..+.|......+.++++..+.+.++ +..+.+++|||+|+++|+++..
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999888763 2457799999999999999999
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE 163 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (225)
.|++.|-+++++||+++..+|..+..|+..+.-+. ..+.-+|+++||+|+.+.+.++.+++.+++.++++||||+||-+
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 99999999999999999999999999999887665 24666999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccc
Q 027292 164 ATNVENAFMTVLTEIFNIVNKKNLT 188 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~~~~~~~~~~~ 188 (225)
|.+|.+..+.++..+++++++-...
T Consensus 166 g~Nv~kave~LldlvM~Rie~~v~~ 190 (219)
T KOG0081|consen 166 GTNVEKAVELLLDLVMKRIEQCVEK 190 (219)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988854443
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.3e-30 Score=193.66 Aligned_cols=160 Identities=33% Similarity=0.594 Sum_probs=140.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--cCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARN--EFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
+||+|+|++|||||||++++..+ .+...+.++.+.++....+... +..+.+.+|||||++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777888888877776666654 56789999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.........+.+...++++++++||+++.|++++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887765 479999999999997766667666777778888999999999999999999999
Q ss_pred HHHH
Q 027292 175 LTEI 178 (225)
Q Consensus 175 ~~~~ 178 (225)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8875
No 76
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.98 E-value=2e-30 Score=191.79 Aligned_cols=161 Identities=40% Similarity=0.735 Sum_probs=144.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|.+|+|||||+++|+++.+...+.++.+.......+...+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777777666776666777778889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
|+++.++++.+..|+..+......+.|+++++||+|+........++..++++..++.++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776689999999999998766677778888888899999999999999999999999886
Q ss_pred H
Q 027292 178 I 178 (225)
Q Consensus 178 ~ 178 (225)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 77
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=3.7e-30 Score=192.49 Aligned_cols=165 Identities=42% Similarity=0.739 Sum_probs=145.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888788777777777778888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFM 172 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~f~ 172 (225)
|++++.+++.+..|...+..... .+.|+++|+||+|+........++...++...+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999889887665543 379999999999998655666777888888887 7899999999999999999
Q ss_pred HHHHHHHHHH
Q 027292 173 TVLTEIFNIV 182 (225)
Q Consensus 173 ~l~~~~~~~~ 182 (225)
++.+.+++..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999988763
No 78
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=1.2e-30 Score=195.63 Aligned_cols=159 Identities=30% Similarity=0.549 Sum_probs=137.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeC
Q 027292 20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI 99 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 99 (225)
|+|+|++|||||||+++|.++.+...+.++....+ ...+..++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999999887777755443 34566778889999999999999999999999999999999999
Q ss_pred CChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCC
Q 027292 100 SRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSALEAT 165 (225)
Q Consensus 100 ~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 165 (225)
++.++++.+. .|+..+..... +.|+++|+||+|+... ..+..+++..+++..++ .++++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 69998877654 8999999999999642 23667778889999986 89999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTEIFN 180 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~ 180 (225)
|++++|+.+++.+++
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988753
No 79
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.7e-30 Score=198.06 Aligned_cols=158 Identities=25% Similarity=0.427 Sum_probs=129.4
Q ss_pred eeeEEEEcCCCCCHHHHHH-HHhcCc-----CCCCCCCccee-eeEEEE--------EEECCEEEEEEEEeCCCchhhhh
Q 027292 17 VFKVVLIGDSAVGKSQILA-RFARNE-----FSLDSKATIGV-EFQTRT--------LVIQHKSVKAQIWDTAGQERYRA 81 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~ 81 (225)
.+||+++|+.|||||||+. ++.++. +...+.||.+. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 565443 34556677642 322222 24678899999999999875 3
Q ss_pred hhHhhhcCCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CCCCC
Q 027292 82 VTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE-------------------QRAVP 141 (225)
Q Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~-------------------~~~~~ 141 (225)
+...+++.+|++|+|||++++.+++.+. .|+..+..... +.|++||+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999996 69998877654 789999999999964 36778
Q ss_pred HHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 142 TEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
.+++++++++++++|+||||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999998864
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=5.3e-30 Score=189.77 Aligned_cols=159 Identities=48% Similarity=0.855 Sum_probs=143.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887778888888887777777888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
|+++..+++.+..|+..+..+. ..+.|+++|+||+|+.. .....++...++...+++++++|+++|.|++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999988775 35799999999999974 455677888889899999999999999999999999887
Q ss_pred H
Q 027292 177 E 177 (225)
Q Consensus 177 ~ 177 (225)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 81
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1e-29 Score=189.70 Aligned_cols=164 Identities=44% Similarity=0.820 Sum_probs=146.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+++|++|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988887777787777777777788888899999999999999999899999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||+.+..+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.+.+.....++++|+++|.|++++|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999998887766679999999999998766667666777777777889999999999999999999
Q ss_pred HHHH
Q 027292 175 LTEI 178 (225)
Q Consensus 175 ~~~~ 178 (225)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8764
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=4.1e-30 Score=202.43 Aligned_cols=160 Identities=24% Similarity=0.445 Sum_probs=138.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|.+|||||||+++|+++.+...+.++.+ ++....+.+++..+.+.||||+|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999887777765 455566777888899999999999999988888899999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEeccCCCCCH
Q 027292 98 DISRRQSFDHIPRWLEELRSH---------ADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-EGLFFLETSALEATNV 167 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~---------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v 167 (225)
|+++.++++.+..|+..+.+. ...+.|+++|+||+|+...+.+..+++.+++.. .++.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999999888654 224799999999999976566777777777653 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 168 ENAFMTVLTEI 178 (225)
Q Consensus 168 ~~~f~~l~~~~ 178 (225)
+++|++|++.+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 83
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=7.6e-30 Score=198.32 Aligned_cols=167 Identities=26% Similarity=0.361 Sum_probs=141.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc-CCCEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR-GAVGAML 95 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~~i~ 95 (225)
+||+|+|++|||||||+++|..+.+. ..+.++.+.++....+.+++....+.+|||+|++. .....++. .+|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 56666655567777778888889999999999982 33445666 9999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++|+++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998877642 579999999999998767777777888888889999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 027292 175 LTEIFNIVNKKN 186 (225)
Q Consensus 175 ~~~~~~~~~~~~ 186 (225)
++.+.......+
T Consensus 159 ~~~~~~~~~~~~ 170 (221)
T cd04148 159 VRQIRLRRDSKE 170 (221)
T ss_pred HHHHHhhhcccc
Confidence 999876555433
No 84
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.5e-30 Score=194.41 Aligned_cols=163 Identities=23% Similarity=0.249 Sum_probs=140.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
.+++||+++|.+|||||||+++|+++.+. ..+.++.+..+....+.+++..+.+.+||++|++.+..++..++..+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 57899999999999999999999999988 78888888777777777788888999999999999998899999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFM 172 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~f~ 172 (225)
|+|||++++.+++.+..|+..+... .+.|+++|+||+|+.+.......+..++++.+++. ++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999988888765332 37999999999999754444344566777778874 79999999999999999
Q ss_pred HHHHHHH
Q 027292 173 TVLTEIF 179 (225)
Q Consensus 173 ~l~~~~~ 179 (225)
.+.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998875
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=6.4e-30 Score=190.84 Aligned_cols=162 Identities=31% Similarity=0.545 Sum_probs=142.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|.+|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+|||||++.|..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999998877777776543 3455667788899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
|++++++++.+..|+..+.+.. ..+.|+++++||.|+.+.+....++...+++.++ ++++++||+++.|++++|+++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999998887654 3579999999999998766777777888888888 7899999999999999999999
Q ss_pred HHHHH
Q 027292 176 TEIFN 180 (225)
Q Consensus 176 ~~~~~ 180 (225)
..++.
T Consensus 161 ~~~~~ 165 (168)
T cd04177 161 RQIIC 165 (168)
T ss_pred HHHhh
Confidence 87754
No 86
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=3e-30 Score=191.96 Aligned_cols=160 Identities=34% Similarity=0.526 Sum_probs=136.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcCCCEEEEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-YRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i~v~ 97 (225)
||+|+|++|+|||||+++++.+.+...+.++....+ ...+..++..+.+.+||+||++. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999888766666654333 45566778889999999999885 3445677889999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC-CCHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHA--DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA-TNVENAFMTV 174 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v~~~f~~l 174 (225)
|+++..+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..+++..+++|+++|++++ .|++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887764 347999999999999766677778888899999999999999999 5999999999
Q ss_pred HHHHH
Q 027292 175 LTEIF 179 (225)
Q Consensus 175 ~~~~~ 179 (225)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 87
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.4e-29 Score=186.19 Aligned_cols=159 Identities=55% Similarity=0.945 Sum_probs=145.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
|++++++++.+..|+..+......+.|+++++||+|+........++..+++...+++++++|++++.|+.++|++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999998887567999999999999755667788888999888999999999999999999999863
No 88
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=6.6e-30 Score=188.84 Aligned_cols=153 Identities=19% Similarity=0.339 Sum_probs=129.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|+.|||||||+++++.+.+...+.++ ... +...+.+++..+.+.+|||+|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~-~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGR-FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccc-eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999998887665544 333 345677788889999999999874 34567899999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE--EQRAVPTEDAKEFAQKE-GLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
|++++++++.+..|+..+..... .+.|+++|+||.|+. ..+.+..+++++++++. ++.|++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987764 578999999999985 34677788888888876 488999999999999999999
Q ss_pred HHHH
Q 027292 174 VLTE 177 (225)
Q Consensus 174 l~~~ 177 (225)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8864
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=9.8e-30 Score=190.74 Aligned_cols=157 Identities=30% Similarity=0.551 Sum_probs=136.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|++|+|||||++++.++.+...+.++. .+.....+..++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999998888777764 4455556677788899999999999999999999999999999999
Q ss_pred eCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292 98 DISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFLETSALE 163 (225)
Q Consensus 98 d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 163 (225)
|++++.+++.+ ..|+..+.... .+.|+++|+||+|+.. .+.+..+++..+++..+. .|+++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999997 46988887643 3799999999999863 346677788899999887 799999999
Q ss_pred CCCHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLT 176 (225)
Q Consensus 164 ~~~v~~~f~~l~~ 176 (225)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988763
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.3e-29 Score=190.14 Aligned_cols=159 Identities=26% Similarity=0.484 Sum_probs=136.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|++|+|||||+++|..+.+...+.++.. +.....+..++..+.+.+|||||++.|..++..++..+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988777766654 333445667788889999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292 98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSALE 163 (225)
Q Consensus 98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 163 (225)
|+.++.+++.+. .|+..+... ..+.|+++|+||+|+.+. ..+..+++..+++..++ +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999885 688888765 458999999999998542 24667778888888886 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTEI 178 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~ 178 (225)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 91
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.8e-31 Score=183.02 Aligned_cols=161 Identities=42% Similarity=0.746 Sum_probs=149.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeC
Q 027292 21 VLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI 99 (225)
Q Consensus 21 ~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 99 (225)
+++|++++|||.|+-++..+-|.. ....+.++++..+.+..++..+.+++|||+|+++|++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 479999999999998887776643 4467889999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292 100 SRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
.+..+|+..+.|+.+++++....+.+.+++||+|+..++.+..++.++++..+++||+++||++|.+|+..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999999888889999999999888888999999999999999999999999999999999998887
Q ss_pred HH
Q 027292 180 NI 181 (225)
Q Consensus 180 ~~ 181 (225)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 76
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=8.3e-29 Score=183.58 Aligned_cols=162 Identities=36% Similarity=0.586 Sum_probs=140.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|++|+|||||++++....+...+.++.+.. .......++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999988877777665443 3345567778899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
|+.++.+++.+..|+..+..... .+.|+++|+||+|+.+...........++..++++++++|++++.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999988877643 57999999999999764556667778888889999999999999999999999988
Q ss_pred HHHH
Q 027292 177 EIFN 180 (225)
Q Consensus 177 ~~~~ 180 (225)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 7753
No 93
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-31 Score=191.84 Aligned_cols=179 Identities=30% Similarity=0.544 Sum_probs=168.8
Q ss_pred CCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh
Q 027292 6 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSA 85 (225)
Q Consensus 6 ~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 85 (225)
++.+.++..+..+|++|+|..++||||+|++++.+-|...+..+.+.++....+.+..+++.+.+|||+|+++|+.+...
T Consensus 9 ~~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkA 88 (246)
T KOG4252|consen 9 GMAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKA 88 (246)
T ss_pred cCCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHH
Confidence 45666777889999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT 165 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (225)
+++++.+.++||+.++..+|+....|++.+....+ .+|.++|-||+|+.++..+...+++.+++.++..++.+|+++..
T Consensus 89 yyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~ 167 (246)
T KOG4252|consen 89 YYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDF 167 (246)
T ss_pred HhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999987776 89999999999999988999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhc
Q 027292 166 NVENAFMTVLTEIFNIVNKK 185 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~~~~~ 185 (225)
||..+|.+|+..+.+.+.+.
T Consensus 168 NV~~vF~YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLTQQKKQS 187 (246)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988873
No 94
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=9e-29 Score=182.57 Aligned_cols=158 Identities=37% Similarity=0.610 Sum_probs=139.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
||+|+|++|||||||+++++...+...+.++.. +.....+...+..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999887777777655 4555556667778899999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 99 ISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
+++.++++.+..|+..+..... .+.|+++|+||+|+........+.+..++..++++++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999988887765 589999999999998766777788888988888999999999999999999999875
No 95
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.7e-28 Score=186.34 Aligned_cols=162 Identities=30% Similarity=0.551 Sum_probs=135.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
.||+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+||++|++.+......++..+|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998888766666644333 335556777888999999999988877777889999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC----------CCCCCHHHHHHHHHHcCC-eEEEeccCCCC
Q 027292 98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE----------QRAVPTEDAKEFAQKEGL-FFLETSALEAT 165 (225)
Q Consensus 98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 165 (225)
|+++.++++.+. .|+..+..... +.|+++|+||+|+.. .+.+..++...+++..++ .||++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 69998876654 699999999999853 234556778888999985 79999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTEIFNI 181 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~ 181 (225)
|++++|+++.+.++..
T Consensus 160 ~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 160 GVDDVFEAATRAALLV 175 (187)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999888655
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.3e-28 Score=183.41 Aligned_cols=159 Identities=30% Similarity=0.532 Sum_probs=133.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
.||+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999988777777654443 45567778889999999999999988888899999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEeccCC
Q 027292 98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSALE 163 (225)
Q Consensus 98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 163 (225)
|+++.++++.+. .|+..+..... +.|+++|+||+|+.+. ..+...+.++++...+. .++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998884 68888776543 7999999999998542 22345667778877775 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTEI 178 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~ 178 (225)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
No 97
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=186.88 Aligned_cols=167 Identities=35% Similarity=0.515 Sum_probs=153.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..+||+++|.+|+|||+|..+|..+.|...|.|+.. +.+...+.+++..+.+.|+||+|+++|..+...++...|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999976 6667778888999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
||++++..||+.+..++..+.+... ..+|+++|+||+|+...+.+..++.+.++..++++|+|+||+.+.+|+++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999855443 568999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 027292 175 LTEIFNIVN 183 (225)
Q Consensus 175 ~~~~~~~~~ 183 (225)
++.+...+.
T Consensus 161 ~r~~~~~~~ 169 (196)
T KOG0395|consen 161 VREIRLPRE 169 (196)
T ss_pred HHHHHhhhc
Confidence 999887443
No 98
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=2.4e-28 Score=187.08 Aligned_cols=160 Identities=28% Similarity=0.442 Sum_probs=134.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
||+|+|++|||||||+++|+++.+...+.++.. +.....+.+.+..+.+.+||+||+..|..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988777666653 4455566677778899999999999999988999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 99 ISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEE-QRAVPTEDAKEFAQ-KEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..+...+... .+++.++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988877654 5799999999999965 34444444444433 4567899999999999999999999
Q ss_pred HHHH
Q 027292 176 TEIF 179 (225)
Q Consensus 176 ~~~~ 179 (225)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8765
No 99
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=3.5e-28 Score=183.93 Aligned_cols=165 Identities=19% Similarity=0.364 Sum_probs=131.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
.++|+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998877543 566555555544443 3467899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH--H----cCCeEEEeccCCCCCHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ--K----EGLFFLETSALEATNVE 168 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~~v~ 168 (225)
|+|+++..+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++...+.. . .+++++++||+++.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 999999999988888888776543 34799999999999864 234444444432 1 12468999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027292 169 NAFMTVLTEIFNIVNK 184 (225)
Q Consensus 169 ~~f~~l~~~~~~~~~~ 184 (225)
++|++|.+.+.+.+..
T Consensus 160 ~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 160 EGLEKLYEMILKRRKM 175 (183)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999766543
No 100
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=6.9e-28 Score=181.73 Aligned_cols=163 Identities=35% Similarity=0.551 Sum_probs=140.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
.||+|+|.+|+|||||++++.+..+...+.++....+ ...+...+..+.+.+|||||++.+...+..++..+|++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888766666654333 345566777889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
|.++..+++.+..|+..+.+.. ..+.|+++|+||+|+...+....++...+++.++.+++++||+++.|+.++|+++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999988877654 357899999999999765666666777788888899999999999999999999998
Q ss_pred HHHHH
Q 027292 177 EIFNI 181 (225)
Q Consensus 177 ~~~~~ 181 (225)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 88655
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=1.4e-28 Score=183.54 Aligned_cols=154 Identities=21% Similarity=0.409 Sum_probs=123.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..++|+++|++|||||||+++|..+.+. .+.++.+.+.. .+. ...+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999887764 34566555443 222 356889999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEeccCCCCCHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-----EGLFFLETSALEATNVEN 169 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 169 (225)
|||++++.+++.+..|+..+.... ..+.|++||+||+|+.+ ....+++..+... ..+.++++||++|.|+.+
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 999999999998888777665432 34789999999999975 2455666655421 234689999999999999
Q ss_pred HHHHHHH
Q 027292 170 AFMTVLT 176 (225)
Q Consensus 170 ~f~~l~~ 176 (225)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999865
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=4.1e-29 Score=185.79 Aligned_cols=152 Identities=18% Similarity=0.317 Sum_probs=125.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeC
Q 027292 20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI 99 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 99 (225)
|+++|++|||||||+++|.+..+...+.++.+... ..+++..+.+.+||++|++.+..++..+++.+|++|+|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999888777777766542 23345678899999999999999999999999999999999
Q ss_pred CChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH----HHHHHHHHHcCCeEEEeccCC------CCCHHH
Q 027292 100 SRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT----EDAKEFAQKEGLFFLETSALE------ATNVEN 169 (225)
Q Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~v~~ 169 (225)
++..++.....|+..+.... .+.|+++|+||+|+...+.... ..+..++++.++.++++||++ ++||.+
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence 99999999889988876544 4899999999999976443221 123455566678899999888 999999
Q ss_pred HHHHHHH
Q 027292 170 AFMTVLT 176 (225)
Q Consensus 170 ~f~~l~~ 176 (225)
+|+.+++
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998875
No 103
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=5.8e-28 Score=182.32 Aligned_cols=159 Identities=20% Similarity=0.365 Sum_probs=123.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...+||+++|..+||||||++++..+.+. .+.|+.+.+.. .+ +...+.+.+||+||++.+..++..+++.+|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999987775 45666665443 22 235678999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeEEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-----GLFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~ 168 (225)
+|||+++.++++....|+..+.... ..+.|++|++||+|+.+. ...++..+...-. .+.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 9999999999988877776664332 247999999999999753 3334433332111 1236689999999999
Q ss_pred HHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFN 180 (225)
Q Consensus 169 ~~f~~l~~~~~~ 180 (225)
++|+||.+.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999888765
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=3.6e-28 Score=181.62 Aligned_cols=156 Identities=22% Similarity=0.392 Sum_probs=126.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
||+++|.+|||||||+++|.+..+.. +.+|.+.... .+ +...+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987643 5666554443 22 2356789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC------CeEEEeccCCCCCHHHHH
Q 027292 99 ISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG------LFFLETSALEATNVENAF 171 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~f 171 (225)
++++.+++.+..|+..+.... ..+.|++||+||+|+.+ ....+++++++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999988876543 24689999999999964 355666666653222 258899999999999999
Q ss_pred HHHHHHHHHH
Q 027292 172 MTVLTEIFNI 181 (225)
Q Consensus 172 ~~l~~~~~~~ 181 (225)
+||.+.+...
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998876654
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=3.3e-28 Score=180.05 Aligned_cols=152 Identities=20% Similarity=0.416 Sum_probs=118.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+++|.+|||||||++++..+.+. .+.|+.+.... .+. ...+.+.+||+||++.+..++..+++.+|++||||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999888775 46666665443 232 24688999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHHH-HHHH----HHcCCeEEEeccCCCCCHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTEDA-KEFA----QKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
|+++..+++.+..|+..+... ...+.|++|++||+|+.+. ...+++ ..+. ...++.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877766433 2246899999999999652 223332 2221 1123457899999999999999
Q ss_pred HHHHH
Q 027292 172 MTVLT 176 (225)
Q Consensus 172 ~~l~~ 176 (225)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 106
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.7e-27 Score=181.99 Aligned_cols=148 Identities=22% Similarity=0.394 Sum_probs=126.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-----CEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-----HKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
+||+++|+.|||||||+++++.+.+...+.+|.+.++....+.++ +..+.+.+|||+|++.|..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877777666653 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCCCCCCCHHH----HHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHA-------------------DKNIVIILIGNKSDLEEQRAVPTED----AKEFA 149 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~piilv~nK~Dl~~~~~~~~~~----~~~~~ 149 (225)
+|+|||+++..+++.+..|+..+.... ..+.|++||+||+|+.+.+....+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987642 2468999999999997655555442 44678
Q ss_pred HHcCCeEEEeccCCCC
Q 027292 150 QKEGLFFLETSALEAT 165 (225)
Q Consensus 150 ~~~~~~~~~~Sa~~~~ 165 (225)
.+.+++.++.++.++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8899998888888643
No 107
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=4e-27 Score=182.54 Aligned_cols=166 Identities=29% Similarity=0.553 Sum_probs=145.0
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 45567999999999999999999999988888889998888888777778889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
+|+|||+++..++..+..|+..+..... +.|+++++||+|+.+ .....+ ...++...++.++++|+++|.|++++|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999876654 799999999999865 233333 3456777888999999999999999999
Q ss_pred HHHHHHHHH
Q 027292 173 TVLTEIFNI 181 (225)
Q Consensus 173 ~l~~~~~~~ 181 (225)
+|++.+...
T Consensus 162 ~ia~~l~~~ 170 (215)
T PTZ00132 162 WLARRLTND 170 (215)
T ss_pred HHHHHHhhc
Confidence 999988753
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1e-27 Score=178.62 Aligned_cols=160 Identities=28% Similarity=0.371 Sum_probs=125.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|++|||||||+++|.++.+...+.++ . ........+.+..+.+.+|||||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-L-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-c-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999999886554332 2 222233445667789999999999988877888889999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHHcC--CeEEEeccCCCCCHHHHHH
Q 027292 98 DISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDAKEFAQKEG--LFFLETSALEATNVENAFM 172 (225)
Q Consensus 98 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~f~ 172 (225)
|++++.+++.+. .|+..+..... +.|+++|+||+|+.+.... ..+....+...++ ..++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999974 68888876654 8999999999999764432 1233334444443 3699999999999999999
Q ss_pred HHHHHHHH
Q 027292 173 TVLTEIFN 180 (225)
Q Consensus 173 ~l~~~~~~ 180 (225)
.+...+++
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887764
No 109
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=1.4e-27 Score=179.42 Aligned_cols=156 Identities=22% Similarity=0.394 Sum_probs=122.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..+||+++|.+|||||||++++..+.+. .+.|+.+.++. .+.. ..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4699999999999999999999887764 45666655543 2222 45789999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVEN 169 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 169 (225)
|||++++.+++....|+..+.... ..+.|++||+||+|+.+.. ..+++..... ...+.++++||++|.|+.+
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 999999999999888887765432 2478999999999997532 3333333221 1233477899999999999
Q ss_pred HHHHHHHHH
Q 027292 170 AFMTVLTEI 178 (225)
Q Consensus 170 ~f~~l~~~~ 178 (225)
+|+||.+.+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999997764
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=1.8e-27 Score=179.82 Aligned_cols=160 Identities=23% Similarity=0.384 Sum_probs=123.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..+||+|+|++|||||||++++..+.+.. +.+|.+.++. .+. ...+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998877754 5566555443 222 356789999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVEN 169 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 169 (225)
|+|+++.++++....|+..+... ...+.|++||+||.|+.+. ...+++..... ...+.++++||++|.|+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999998887777665432 2246899999999998652 23333322211 1123467999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 170 AFMTVLTEIFNIV 182 (225)
Q Consensus 170 ~f~~l~~~~~~~~ 182 (225)
+|++|.+.+.+.+
T Consensus 169 ~~~~l~~~i~~~~ 181 (182)
T PTZ00133 169 GLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887654
No 111
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=3.3e-27 Score=176.33 Aligned_cols=157 Identities=29% Similarity=0.567 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|++|+|||||+++|.++.+...+.++.. +........++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999988666666644 334445566788899999999999988888888889999999999
Q ss_pred eCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CCCHHHHHHHHHHcCC-eEEEeccCCC
Q 027292 98 DISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQR-----------AVPTEDAKEFAQKEGL-FFLETSALEA 164 (225)
Q Consensus 98 d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 164 (225)
|+++..++... ..|+..+..... +.|+++|+||+|+.+.. .+..++...+...++. .++++|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 99999888876 568877776554 79999999999996543 2346677788888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 027292 165 TNVENAFMTVLT 176 (225)
Q Consensus 165 ~~v~~~f~~l~~ 176 (225)
.|+.++|+++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=1.7e-27 Score=178.61 Aligned_cols=157 Identities=22% Similarity=0.338 Sum_probs=124.1
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
.....++|+++|++|||||||+++|.+..+ ..+.++.+. ....+.++ .+.+.+|||||++.+..++..++..+|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 345678999999999999999999998754 344555443 23333343 5788999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCC
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATN 166 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 166 (225)
+++|||+++..+++....|+..+... ...+.|+++|+||+|+.+.. ..+++..+.. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 99999999999998888888776543 23579999999999997532 4455555442 2456799999999999
Q ss_pred HHHHHHHHHH
Q 027292 167 VENAFMTVLT 176 (225)
Q Consensus 167 v~~~f~~l~~ 176 (225)
++++|+++++
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=183.37 Aligned_cols=166 Identities=30% Similarity=0.529 Sum_probs=149.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-QHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
...+|++|||+.++|||+|+..+..+.|+..|.||.. +.+...+.+ ++..+.+.+|||+|+++|+.++...++.+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999987 556666777 49999999999999999999998899999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEe
Q 027292 94 MLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLET 159 (225)
Q Consensus 94 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 159 (225)
+++|++.++++++.+ ..|+.++..++. +.|+|||++|.||.++ ..+..++..+++++.|+ .|+||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999996 779999999885 8999999999999742 35677889999999995 59999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHH
Q 027292 160 SALEATNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 160 Sa~~~~~v~~~f~~l~~~~~~~~ 182 (225)
||+++.|+.++|+..++.++...
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhccc
Confidence 99999999999999999998764
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=7.2e-27 Score=172.96 Aligned_cols=152 Identities=20% Similarity=0.363 Sum_probs=118.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+|+++|++|||||||+++|.+..+ ...+.++.+..... + ....+.+.+|||||++.+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44556665543322 2 235678999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHA---DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVEN 169 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 169 (225)
|+++..++.....|+..+.... ..+.|+++|+||+|+.+.. ..+++..... ...+.++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999888888888775542 2479999999999997532 2233322211 1234589999999999999
Q ss_pred HHHHHHH
Q 027292 170 AFMTVLT 176 (225)
Q Consensus 170 ~f~~l~~ 176 (225)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=2.6e-26 Score=172.35 Aligned_cols=154 Identities=23% Similarity=0.410 Sum_probs=120.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..++|+++|++|+|||||++++..+.+.. +.++.+.++. .+.. ..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999887754 4555554432 2322 35789999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHH-HHH----HHcCCeEEEeccCCCCCHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAK-EFA----QKEGLFFLETSALEATNVEN 169 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~v~~ 169 (225)
|+|+++.+++.....|+..+.... ..+.|+++++||+|+.+. ...++.. .+. +..+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 999999988888777776665433 246899999999998752 2334332 222 23456799999999999999
Q ss_pred HHHHHHH
Q 027292 170 AFMTVLT 176 (225)
Q Consensus 170 ~f~~l~~ 176 (225)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999865
No 116
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.4e-25 Score=179.54 Aligned_cols=142 Identities=25% Similarity=0.506 Sum_probs=122.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-------------EEEEEEEEeCCCchhh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-------------KSVKAQIWDTAGQERY 79 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~~~ 79 (225)
+....+||+|+|+.|||||||+++|.++.+...+.++.+.++....+.+++ ..+.+.||||+|++.|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 455679999999999999999999999999888889988888777666542 4688999999999999
Q ss_pred hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCCC---C---CC
Q 027292 80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD------------KNIVIILIGNKSDLEEQR---A---VP 141 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~~---~---~~ 141 (225)
..++..+++.+|++|+|||+++..+++.+..|+..+..... .++|++||+||+|+...+ . +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987631 258999999999996542 2 35
Q ss_pred HHHHHHHHHHcCC
Q 027292 142 TEDAKEFAQKEGL 154 (225)
Q Consensus 142 ~~~~~~~~~~~~~ 154 (225)
.+++++++++.++
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 7889999999884
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.8e-26 Score=170.67 Aligned_cols=152 Identities=24% Similarity=0.436 Sum_probs=118.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
+|+|+|++|||||||+++|.+..+.. ..++.+.... .+.. +..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988754 3455554332 2332 345789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH------HHHcCCeEEEeccCCCCCHHHHH
Q 027292 99 ISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEF------AQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
+.+..++.....|+..+.... ..+.|+++|+||+|+... ...+++... +...+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999988888888887765543 247999999999999642 223333222 11234568999999999999999
Q ss_pred HHHHH
Q 027292 172 MTVLT 176 (225)
Q Consensus 172 ~~l~~ 176 (225)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=3e-26 Score=170.62 Aligned_cols=152 Identities=24% Similarity=0.419 Sum_probs=117.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcC------CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEF------SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
+|+|+|++|+|||||+++|.+... ...+.++.+.... .+.+ ....+.+|||||++.+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999976422 2233444444432 3333 35789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cCCeEEEeccCCC
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-------EGLFFLETSALEA 164 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 164 (225)
+++|+|+.+..++.....|+..+.+.. ..+.|+++++||+|+... ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999888888888888776543 357999999999998652 334444444332 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 027292 165 TNVENAFMTVLT 176 (225)
Q Consensus 165 ~~v~~~f~~l~~ 176 (225)
.|++++|+||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 119
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=1.1e-26 Score=173.18 Aligned_cols=151 Identities=20% Similarity=0.339 Sum_probs=119.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
+|+++|.+|||||||+++|.+. +...+.++.+... ..+.. ..+.+.+||+||++.+..++..+++.+|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999876 6566677766542 23333 45789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHH------HHHHHHcC--CeEEEeccCCC-----
Q 027292 99 ISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDA------KEFAQKEG--LFFLETSALEA----- 164 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~------~~~~~~~~--~~~~~~Sa~~~----- 164 (225)
+++..+++.+..|+..+..... .+.|++||+||+|+.+.+. ..++ ..++.+.+ +.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999988875532 4799999999999976432 2221 22232233 45788999998
Q ss_pred -CCHHHHHHHHHH
Q 027292 165 -TNVENAFMTVLT 176 (225)
Q Consensus 165 -~~v~~~f~~l~~ 176 (225)
.|+.+.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999964
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=8e-26 Score=171.91 Aligned_cols=155 Identities=21% Similarity=0.321 Sum_probs=123.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..++|+++|++|||||||++++.+..+. .+.++.+... ..+.++ ...+.+||+||++.+...+..+++.+|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999987764 4445544332 333333 4678999999999999889999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH----------------cCCeEEE
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQK----------------EGLFFLE 158 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~ 158 (225)
|+|+.+..+++....|+..+.+... .+.|+++++||+|+.+ .+..++++.+... ..+.+++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 9999999888888888887765443 5799999999999864 4455666665542 2245899
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 027292 159 TSALEATNVENAFMTVLTE 177 (225)
Q Consensus 159 ~Sa~~~~~v~~~f~~l~~~ 177 (225)
+||+++.|+.++|+||.+.
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999999865
No 121
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=2.3e-25 Score=167.12 Aligned_cols=141 Identities=36% Similarity=0.687 Sum_probs=127.5
Q ss_pred CcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 027292 40 NEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA 119 (225)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 119 (225)
+.|...+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677888999999988888888999999999999999999999999999999999999999999999999999987766
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 120 DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 120 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
..+.|++||+||+|+.+.+.+..+++..++..+++.|+++||++|.|++++|++|++.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999997666778888888888899999999999999999999999988754
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=1e-25 Score=166.36 Aligned_cols=151 Identities=23% Similarity=0.371 Sum_probs=113.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
||+|+|++++|||||++++..+.+. .+.++.+.+.. .+. ...+.+.+|||||++.+..++..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999887764 34455444332 222 345789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHH
Q 027292 99 ISRRQSFDHIPRWLEELRS-HADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
++++.++.....|+..+.+ ....+.|+++|+||+|+.+.. ...++..... ..+.+++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998887776666554433 223479999999999997532 2233322211 1234699999999999999999
Q ss_pred HHHH
Q 027292 173 TVLT 176 (225)
Q Consensus 173 ~l~~ 176 (225)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9875
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=5.3e-26 Score=167.83 Aligned_cols=151 Identities=23% Similarity=0.401 Sum_probs=119.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
||+++|.+|||||||++++++... ..+.++.+..... +.+ ....+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999873 3445554444332 333 35789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHH
Q 027292 99 ISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
++++.++.....|+..+.... ..+.|+++|+||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888887766543 3579999999999997533 3333433322 2346799999999999999999
Q ss_pred HHHH
Q 027292 173 TVLT 176 (225)
Q Consensus 173 ~l~~ 176 (225)
+|+.
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=5.2e-25 Score=166.70 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=120.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
+..++|+++|.+|||||||++++.++.+.. +.++.+... ..+.. .++.+.+||+||++.+...+..++..+|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 445899999999999999999999876542 344433322 22223 3578899999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEecc
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK------------EGLFFLETSA 161 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 161 (225)
+|+|++++.++.....|+..+.+.. ..+.|+++|+||+|+.. ....+++.+.... ....++++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999988888888877765432 24789999999999864 3455555543311 1234899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027292 162 LEATNVENAFMTVLTE 177 (225)
Q Consensus 162 ~~~~~v~~~f~~l~~~ 177 (225)
+++.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999864
No 125
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=4.3e-25 Score=165.72 Aligned_cols=158 Identities=28% Similarity=0.460 Sum_probs=125.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
....++|+++|..|||||||++++..+.... ..||.+.+.. .+.+ ..+.+.+||.+|+..++..|..++..+|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~--~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE--EIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE--EEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc--eeee--CcEEEEEEeccccccccccceeecccccee
Confidence 4678999999999999999999998765433 4555444433 3444 446789999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH------HcCCeEEEeccCCCCC
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ------KEGLFFLETSALEATN 166 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~ 166 (225)
|||+|.++.+.+......+..+.... ..+.|+++++||.|+.+ ....+++..... ...+.++.+||.+|.|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 99999999888888877777765543 25799999999999875 345565554432 2234589999999999
Q ss_pred HHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEI 178 (225)
Q Consensus 167 v~~~f~~l~~~~ 178 (225)
+.+.|+||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=9.2e-25 Score=160.53 Aligned_cols=151 Identities=24% Similarity=0.413 Sum_probs=120.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeC
Q 027292 20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI 99 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 99 (225)
|+++|++|+|||||+++|.+..+...+.++.+..... +... .+.+.+||+||++.+..++..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999999888888877655543 2332 37899999999999999999999999999999999
Q ss_pred CChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHHHHH
Q 027292 100 SRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 100 ~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
++..++.....|+..+.... ..+.|+++|+||+|+.+.. ......... ....++++++|++++.|++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 99888888877777765432 2478999999999987532 222222211 123357899999999999999999
Q ss_pred HHH
Q 027292 174 VLT 176 (225)
Q Consensus 174 l~~ 176 (225)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=1.1e-24 Score=162.23 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=109.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHhhhc
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR---------AVTSAYYR 88 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~ 88 (225)
.+|+++|.+|+|||||+++|.+..+.....+..+.+..... .....+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 47999999999999999999998764332222122222222 22346789999999974210 11111123
Q ss_pred CCCEEEEEEeCCChhh--HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292 89 GAVGAMLVYDISRRQS--FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN 166 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (225)
.+|++|+|+|+++..+ .+....|+..+.... .+.|+++|+||+|+....... +..++....+.+++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 4689999999998654 355567888776554 378999999999997543322 24455555667899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEIF 179 (225)
Q Consensus 167 v~~~f~~l~~~~~ 179 (225)
++++|+++.+.++
T Consensus 156 i~~l~~~l~~~~~ 168 (168)
T cd01897 156 VDEVKNKACELLL 168 (168)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988763
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.8e-24 Score=162.87 Aligned_cols=154 Identities=20% Similarity=0.266 Sum_probs=113.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc-------CCCCCCC------cceeeeEEEEEE--E---CCEEEEEEEEeCCCchhhh
Q 027292 19 KVVLIGDSAVGKSQILARFARNE-------FSLDSKA------TIGVEFQTRTLV--I---QHKSVKAQIWDTAGQERYR 80 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~l~Dt~G~~~~~ 80 (225)
+|+++|++++|||||+++|++.. +...+.+ +.+.++...... + ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1111111 112333333222 2 5567889999999999999
Q ss_pred hhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe---EE
Q 027292 81 AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF---FL 157 (225)
Q Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~ 157 (225)
..+..++..+|++|+|+|+++..+......|.... ..+.|+++|+||+|+.+.. ......++++.+++. ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876666665564332 2378999999999986422 223345566666654 89
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 027292 158 ETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 158 ~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
++||++|.|++++|+++.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998653
No 129
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=5.4e-24 Score=155.98 Aligned_cols=157 Identities=35% Similarity=0.514 Sum_probs=128.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+..++..+.+.++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999987777777877777776677777678999999999999999998899999999999
Q ss_pred EeCCCh-hhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 97 YDISRR-QSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 97 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|.... .++.... .|+..+......+.|+++++||+|+.... ........+......+++++||.++.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999876 6666654 67777766655488999999999997633 33333344444445679999999999999999986
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.5e-24 Score=161.81 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=111.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch----hhhhhhHh---hhcCCC
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE----RYRAVTSA---YYRGAV 91 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~---~~~~~d 91 (225)
+|+|+|.+|||||||+++|.+........+..+.+.....+.+.+ ...+.+|||||.. .+..+... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 699999999999999999987654322222222222222222222 2478999999963 22222233 344699
Q ss_pred EEEEEEeCCCh-hhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEeccCCCCCH
Q 027292 92 GAMLVYDISRR-QSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-EGLFFLETSALEATNV 167 (225)
Q Consensus 92 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v 167 (225)
++++|+|+++. .+++.+..|.+.+..... .+.|+++|+||+|+.+... .......+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-LFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-hHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788889999988877642 3689999999999976433 23444455555 3678999999999999
Q ss_pred HHHHHHHHHH
Q 027292 168 ENAFMTVLTE 177 (225)
Q Consensus 168 ~~~f~~l~~~ 177 (225)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 131
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=3.2e-24 Score=164.97 Aligned_cols=157 Identities=19% Similarity=0.176 Sum_probs=114.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh---------hhhhhH
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER---------YRAVTS 84 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~ 84 (225)
.++.++|+|+|++|||||||++++++..+.....+..+.+.....+.+.+ ...+.+|||||... +...+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 35568999999999999999999999865433333333333333333333 23789999999732 22222
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA 164 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (225)
..+..+|++++|+|++++.+......|...+......+.|+++|+||+|+...... .......+.+++++||+++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCC
Confidence 23668999999999999888877778887776665557899999999999653221 1344455677999999999
Q ss_pred CCHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTE 177 (225)
Q Consensus 165 ~~v~~~f~~l~~~ 177 (225)
.|+.++|++|.+.
T Consensus 191 ~gi~~l~~~L~~~ 203 (204)
T cd01878 191 EGLDELLEAIEEL 203 (204)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998765
No 132
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=9e-24 Score=172.65 Aligned_cols=164 Identities=14% Similarity=0.069 Sum_probs=122.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRG 89 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 89 (225)
...|.|+|.++||||||+++|..........+.++.......+.+. ....+.+||+||.-+ ....+...+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 4789999999999999999999865443333433444444333332 345689999999532 22223345668
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
++++|+|+|+++.++++.+..|..++..+.. .+.|+++|+||+|+.+......+..+.+....+.+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988788889999999877643 47899999999999764433334455555666788999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027292 168 ENAFMTVLTEIFNI 181 (225)
Q Consensus 168 ~~~f~~l~~~~~~~ 181 (225)
+++|++|.+.+.+.
T Consensus 317 ~eL~~~L~~~l~~~ 330 (335)
T PRK12299 317 DELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=1.8e-23 Score=156.54 Aligned_cols=152 Identities=22% Similarity=0.349 Sum_probs=115.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|+|||||++++.+..+. .+.++.+.+.. .+... +..+.+||++|+..+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 44799999999999999999999987653 24444443332 33333 467899999999998888889999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--------eEEEeccCCCC
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL--------FFLETSALEAT 165 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~ 165 (225)
+|+|+.+..++.....|+..+.... ..+.|+++++||+|+.+.. ..++ +....++ .++++||++|.
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEE---IAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHH---HHHHcCCcccCCCeEEEEEeECCCCC
Confidence 9999999888887777776654432 3479999999999986532 2222 2222332 37899999999
Q ss_pred CHHHHHHHHHH
Q 027292 166 NVENAFMTVLT 176 (225)
Q Consensus 166 ~v~~~f~~l~~ 176 (225)
|++++|+||.+
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 134
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=8e-24 Score=156.76 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC---cCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARN---EFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
+.|+|+|.+|||||||+++|.+. .+...+.++.+.+.....+.... ...+.+|||||++.|......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 46899999999999999999863 23333333434444443444332 468999999999999877777889999999
Q ss_pred EEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHH---cCCeEEEeccCCCCC
Q 027292 95 LVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQK---EGLFFLETSALEATN 166 (225)
Q Consensus 95 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 166 (225)
+|+|+++ .++.+. +..+... . ..|+++++||+|+..... ...++..+.... .+.+++++|++++.|
T Consensus 80 ~V~d~~~~~~~~~~~~----~~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREH----LEILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHH----HHHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999986 333322 2222221 1 248999999999975321 112233344443 357899999999999
Q ss_pred HHHHHHHHHH
Q 027292 167 VENAFMTVLT 176 (225)
Q Consensus 167 v~~~f~~l~~ 176 (225)
++++|+.+..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 135
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=5.6e-23 Score=159.63 Aligned_cols=173 Identities=37% Similarity=0.566 Sum_probs=141.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+||+|+|+.|||||||+++|....+...+.++.+..+...........+.+.+|||+|++.++.++..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 39999999999999999999999999999999988888877777666688999999999999999999999999999999
Q ss_pred EeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHc---CCeEEEec
Q 027292 97 YDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR------------AVPTEDAKEFAQKE---GLFFLETS 160 (225)
Q Consensus 97 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~S 160 (225)
+|..+ ....+....|+..+......+.|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 4455556889999988876679999999999997643 22222222222222 33389999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHHhhccccc
Q 027292 161 AL--EATNVENAFMTVLTEIFNIVNKKNLTA 189 (225)
Q Consensus 161 a~--~~~~v~~~f~~l~~~~~~~~~~~~~~~ 189 (225)
++ .+.++.++|..+++.+.+.........
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKLVLKN 195 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99 999999999999999987765554433
No 136
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.92 E-value=4.5e-23 Score=146.44 Aligned_cols=161 Identities=22% Similarity=0.367 Sum_probs=128.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
++..++|+++|..|+||||++++|.+.. .....|+.+ +...+.. ...+.+++||..|+...++.|..|+..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~--~~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLE--YKGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEE--ecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 5569999999999999999999998876 333445534 4444444 4678899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCCCHHH------HHHHHHHcCCeEEEeccCCCCC
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRS-HADKNIVIILIGNKSDLEEQRAVPTED------AKEFAQKEGLFFLETSALEATN 166 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~~ 166 (225)
|+|+|.++...++.....+..+.. ....+.|++|++||.|+.. ....++ ..++++...++++.||+.+|++
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence 999999998888877665555433 2235789999999999974 233333 3445566788999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEIFNI 181 (225)
Q Consensus 167 v~~~f~~l~~~~~~~ 181 (225)
+.+.++|+.+.+.++
T Consensus 166 l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=6.5e-24 Score=154.00 Aligned_cols=134 Identities=25% Similarity=0.265 Sum_probs=100.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch-----hhhhhhHhhhcCCCEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE-----RYRAVTSAYYRGAVGA 93 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~~ 93 (225)
||+++|++|||||||+++|.+..+ .+.++.+.++ . -.+|||||.. .+..+.. .++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999998764 2333322221 1 1689999972 3444433 57899999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVENAFM 172 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~f~ 172 (225)
|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....++..++++..+. +++++||+++.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999888654 3444322 249999999999975 33455667777777776 699999999999999999
Q ss_pred HHH
Q 027292 173 TVL 175 (225)
Q Consensus 173 ~l~ 175 (225)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=5.4e-24 Score=163.29 Aligned_cols=157 Identities=22% Similarity=0.258 Sum_probs=108.4
Q ss_pred CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC-----------chhh
Q 027292 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG-----------QERY 79 (225)
Q Consensus 11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~ 79 (225)
.+.+...++|+++|.+|+|||||+++|.+..+.....++ ++.....+... .+.+||||| .+.+
T Consensus 3 ~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~ 76 (201)
T PRK04213 3 ETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKI 76 (201)
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHH
Confidence 344556789999999999999999999988765555444 34433333332 589999999 5667
Q ss_pred hhhhHhhhc----CCCEEEEEEeCCChhhH-Hh---------HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027292 80 RAVTSAYYR----GAVGAMLVYDISRRQSF-DH---------IPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDA 145 (225)
Q Consensus 80 ~~~~~~~~~----~~d~~i~v~d~~~~~s~-~~---------~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 145 (225)
...+..++. .++++++|+|....... +. -..++..+. ..+.|+++|+||+|+.+.. .+..
T Consensus 77 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~ 150 (201)
T PRK04213 77 KDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVL 150 (201)
T ss_pred HHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHH
Confidence 666666553 45788889987643211 00 011122222 2379999999999996532 3445
Q ss_pred HHHHHHcCC---------eEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 146 KEFAQKEGL---------FFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 146 ~~~~~~~~~---------~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
.++...+++ +++++||++| |++++|++|.+.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 151 DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 566666664 4799999999 999999999887643
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=1.5e-22 Score=146.97 Aligned_cols=153 Identities=45% Similarity=0.779 Sum_probs=122.0
Q ss_pred EEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCC
Q 027292 22 LIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS 100 (225)
Q Consensus 22 vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 100 (225)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999877 44455554 6666666666677899999999999988888888999999999999999
Q ss_pred ChhhHHhHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 101 RRQSFDHIPRWL-EELRSHADKNIVIILIGNKSDLEEQRAVPTED-AKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 101 ~~~s~~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
+..+...+..|+ .........+.|+++++||+|+.......... ..........+++++|+..+.|+.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999988887773 33333444689999999999997643332222 3445556678899999999999999999886
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=6.2e-23 Score=152.70 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=109.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
.|+|+|.+|+|||||+++|....+...+.+..+.+.....+... +....+.+|||||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999987766544443443333333332 24678999999999999988888999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHH----Hc--CCeEEEeccCCCCCHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP-TEDAKEFAQ----KE--GLFFLETSALEATNVENA 170 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~----~~--~~~~~~~Sa~~~~~v~~~ 170 (225)
|+++....+... .+..+.. .+.|+++|+||+|+.+..... .+....+.. .+ .++++++|++++.|+.++
T Consensus 82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998743222111 1222222 378999999999987422111 111111111 11 356999999999999999
Q ss_pred HHHHHHHHH
Q 027292 171 FMTVLTEIF 179 (225)
Q Consensus 171 f~~l~~~~~ 179 (225)
|++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987653
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=7.6e-23 Score=150.67 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=110.2
Q ss_pred EEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhhc--CCCEE
Q 027292 22 LIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA------VTSAYYR--GAVGA 93 (225)
Q Consensus 22 vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~ 93 (225)
|+|.+|+|||||++++.+........+..+.+.....+..++ ..+.+|||||++.+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998865555555555555555555543 5789999999876653 3455554 99999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
|+|+|+.+.+.. ..|+..+.. .+.|+++|+||+|+.+..... .....+...++++++++|+.++.|+.++|++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999875432 234444433 378999999999997644333 3345677778899999999999999999999
Q ss_pred HHHH
Q 027292 174 VLTE 177 (225)
Q Consensus 174 l~~~ 177 (225)
+.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8775
No 142
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=4.8e-23 Score=157.22 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=106.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc--CcCCCCC------------CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 027292 18 FKVVLIGDSAVGKSQILARFAR--NEFSLDS------------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVT 83 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 83 (225)
-+|+++|.+++|||||+++|+. +.+...+ ..+.+.+.......+.+..+.+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4443322 1223445555555555667889999999999999999
Q ss_pred HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HcCCe
Q 027292 84 SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQ-------KEGLF 155 (225)
Q Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~ 155 (225)
..+++.+|++++|+|+.+.. ......|+..+.. .+.|+++|+||+|+.+.... ..+++.++.. +.+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998732 2223334444332 37899999999999653221 1233444442 23678
Q ss_pred EEEeccCCCCCHHHH
Q 027292 156 FLETSALEATNVENA 170 (225)
Q Consensus 156 ~~~~Sa~~~~~v~~~ 170 (225)
++++||++|.|+.++
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887544
No 143
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=3.5e-23 Score=150.50 Aligned_cols=148 Identities=17% Similarity=0.247 Sum_probs=107.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh------hhhhHhhh--cC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY------RAVTSAYY--RG 89 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~--~~ 89 (225)
++|+++|.|++|||||+|+|++........|..+.+.....+.+.+ ..+.++|+||.-.. ......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999887777777777776666666655 67889999994221 22233333 68
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN 169 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 169 (225)
.|++|+|+|+++.+.-.. +...+.+. +.|+++++||+|......... ...++.+.++++++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 999999999987543222 23333333 899999999999976444332 37788888999999999999999999
Q ss_pred HHHHH
Q 027292 170 AFMTV 174 (225)
Q Consensus 170 ~f~~l 174 (225)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98864
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=2.6e-22 Score=163.95 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=116.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRG 89 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 89 (225)
...|+|+|.++||||||+++|..........+.++.......+.+. ....+.+||+||... ....+...+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 5789999999999999999999875433333333333333334332 246789999999642 11223334557
Q ss_pred CCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292 90 AVGAMLVYDISRR---QSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA 164 (225)
Q Consensus 90 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (225)
+|++|+|+|+++. ++++.+..|.+++..+.. .+.|++||+||+|+.+... ..+..+.+.+..+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999986 678888888888876642 4789999999999975422 233445566667788999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTEI 178 (225)
Q Consensus 165 ~~v~~~f~~l~~~~ 178 (225)
.|++++++++.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=2.9e-22 Score=165.02 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=113.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHh
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ---------ERYRAVTSA 85 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~ 85 (225)
+..++|+++|.+|+|||||+|+|.+........+..+.+.....+.+.+ +..+.+|||+|. +.|.+.+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 3568999999999999999999999875444433334555555555532 357899999996 2344433 2
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT 165 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (225)
.+..+|++|+|+|++++.+.+.+..|...+......+.|+++|+||+|+.+.. ...... ....+++++||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~~-~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERLE-EGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHHH-hCCCCEEEEEccCCC
Confidence 47899999999999998888777777777666554578999999999996421 122111 122458999999999
Q ss_pred CHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTE 177 (225)
Q Consensus 166 ~v~~~f~~l~~~ 177 (225)
|+++++++|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999988754
No 146
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.9e-22 Score=146.82 Aligned_cols=161 Identities=20% Similarity=0.358 Sum_probs=131.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
....++|+++|-.++||||++++|..++.... .||.+.......+ .++.+.+||..|+++++.+|..|+++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 45689999999999999999999998887655 7787766665444 378899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeEEEeccCCCCCH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-----GLFFLETSALEATNV 167 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v 167 (225)
|||+|.++.+-+......+..+..... .+.|+++.+||.|+++ ..+..++....... ...+-.++|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999988888776666655543 6899999999999986 34555544443322 234778999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027292 168 ENAFMTVLTEIFNI 181 (225)
Q Consensus 168 ~~~f~~l~~~~~~~ 181 (225)
.+.++|+.+.+..+
T Consensus 167 ~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 167 YEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887653
No 147
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=6.7e-22 Score=158.22 Aligned_cols=153 Identities=18% Similarity=0.141 Sum_probs=104.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh--------hhhhHhhhcCC
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY--------RAVTSAYYRGA 90 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~~~ 90 (225)
+|+|+|.+|||||||+|+|++......+....++......+.. .....+.+|||||.... ......++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~-~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT-TGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE-cCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998765433322222222222222 23356899999996432 11234467899
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHH
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVEN 169 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 169 (225)
|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+.. ...+....+....+. +++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999999865543 334444433 378999999999996422 122334444444454 699999999999999
Q ss_pred HHHHHHHHH
Q 027292 170 AFMTVLTEI 178 (225)
Q Consensus 170 ~f~~l~~~~ 178 (225)
+++++.+.+
T Consensus 155 L~~~l~~~l 163 (270)
T TIGR00436 155 LAAFIEVHL 163 (270)
T ss_pred HHHHHHHhC
Confidence 999887654
No 148
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=4.4e-22 Score=140.04 Aligned_cols=114 Identities=34% Similarity=0.645 Sum_probs=88.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCC--CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFS--LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
||+|+|+.|||||||+++|++..+. .......+.++.............+.+||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22233334455555566667777799999999999988888889999999999
Q ss_pred EeCCChhhHHhHHH---HHHHHHhhcCCCCcEEEEEeCCC
Q 027292 97 YDISRRQSFDHIPR---WLEELRSHADKNIVIILIGNKSD 133 (225)
Q Consensus 97 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~D 133 (225)
||++++.+++.+.. |+..+..... +.|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 99999999988754 4555554433 699999999998
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.88 E-value=4.2e-22 Score=149.24 Aligned_cols=155 Identities=21% Similarity=0.216 Sum_probs=107.0
Q ss_pred EEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh----hhh---hHhhhcCCCEEE
Q 027292 22 LIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY----RAV---TSAYYRGAVGAM 94 (225)
Q Consensus 22 vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~d~~i 94 (225)
|+|++|||||||+++|.+........+.++.+.....+.+. ....+.+|||||.... ..+ ....+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999986522222222223322223222 1567899999996321 122 233567899999
Q ss_pred EEEeCCCh------hhHHhHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292 95 LVYDISRR------QSFDHIPRWLEELRSHAD-------KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 95 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (225)
+|+|+.+. .+++.+..|...+..... .+.|+++|+||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 577777778777765432 37899999999999754332222223344445677999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027292 162 LEATNVENAFMTVLTE 177 (225)
Q Consensus 162 ~~~~~v~~~f~~l~~~ 177 (225)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999988754
No 150
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.88 E-value=5.2e-22 Score=139.86 Aligned_cols=167 Identities=26% Similarity=0.516 Sum_probs=144.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
..-.++|.++|++..|||||+-++.++++...+..+.|.++..+++.+.+..+.+.+||..|++++..+.+..-..+-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 33469999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-----CCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA-----VPTEDAKEFAQKEGLFFLETSALEATNVE 168 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 168 (225)
+|+||++++.++..+..|++..+......+| |+|++|.|+--.-. .....++..++-.++++|.+|+....+|.
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 9999999999999999999998877665667 55799999732111 11223566677788999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFNI 181 (225)
Q Consensus 169 ~~f~~l~~~~~~~ 181 (225)
.+|..+...++..
T Consensus 176 KIFK~vlAklFnL 188 (205)
T KOG1673|consen 176 KIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHhCC
Confidence 9999888877665
No 151
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=2e-21 Score=159.74 Aligned_cols=154 Identities=26% Similarity=0.361 Sum_probs=104.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCchh-hhhhh-------Hh
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-YRAVT-------SA 85 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~-------~~ 85 (225)
...++|+++|.+|||||||+|+|.+..+..... +.++.......+.. .+..+.||||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~--~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL--KDTQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe--CCeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456799999999999999999999887653222 11122222223333 345789999999742 22211 22
Q ss_pred hhcCCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEeccC
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG--LFFLETSAL 162 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 162 (225)
.+..+|++|+|+|..+ ++... ..|+..+... +.|.++|+||+|+.+. ....+.+++...+ ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 4679999999999765 33344 3355555433 5677889999999642 2344555555443 569999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLTEI 178 (225)
Q Consensus 163 ~~~~v~~~f~~l~~~~ 178 (225)
+|.|++++|++|.+.+
T Consensus 200 tg~gv~eL~~~L~~~l 215 (339)
T PRK15494 200 SGKNIDGLLEYITSKA 215 (339)
T ss_pred CccCHHHHHHHHHHhC
Confidence 9999999999988764
No 152
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=4.6e-21 Score=134.78 Aligned_cols=170 Identities=24% Similarity=0.351 Sum_probs=138.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCC--CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh-hhhhHhhhcCCC
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFS--LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY-RAVTSAYYRGAV 91 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d 91 (225)
....||+|+|..++|||++++.++.+.-. ....+|+...+....-...+..-.+.|+||.|-... ..+-.+++.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 45689999999999999999999876543 344566544444433334455667999999996655 566778899999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA 170 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 170 (225)
++++||+..+++||+.+..+...+..... ..+|+++.+||.|+.+.+++..+.++.|++.-+++++++++++...+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999988776666766554 57999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027292 171 FMTVLTEIFNIVNK 184 (225)
Q Consensus 171 f~~l~~~~~~~~~~ 184 (225)
|.++...+.....+
T Consensus 167 f~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 167 FTYLASRLHQPQSK 180 (198)
T ss_pred HHHHHHhccCCccc
Confidence 99998887665443
No 153
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=2e-21 Score=142.66 Aligned_cols=146 Identities=22% Similarity=0.239 Sum_probs=105.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhc
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA--------VTSAYYR 88 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 88 (225)
++|+++|++|+|||||++++.+..... ...+..+.+.....+.. ....+.+|||||...+.. ....++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876432 22333333333333333 346789999999654422 1234677
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE 168 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 168 (225)
.+|++++|+|+++..+......|.. ..+.|+++|+||+|+.+.... .......+++++||+++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998776665544332 337899999999999764332 334456779999999999999
Q ss_pred HHHHHHHHHH
Q 027292 169 NAFMTVLTEI 178 (225)
Q Consensus 169 ~~f~~l~~~~ 178 (225)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 154
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=4.7e-21 Score=162.11 Aligned_cols=156 Identities=19% Similarity=0.223 Sum_probs=116.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh--------hH
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV--------TS 84 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~ 84 (225)
....++|+++|.+|+|||||+|+|++.... ....+.++.+.....+.++ +..+.+|||||...+... ..
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 345689999999999999999999987542 2334444455555555554 456789999997554322 23
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA 164 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (225)
.+++.+|++++|||++++.+.+.. |+..+.. .+.|+++|+||+|+.+. ....+++.++.+++++|+++
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~- 345 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ- 345 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence 567899999999999988776654 6655532 37899999999999643 12345566778899999998
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 027292 165 TNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 165 ~~v~~~f~~l~~~~~~~~~ 183 (225)
.|+.++|+.+.+.+.+...
T Consensus 346 ~gI~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 346 LKIKALVDLLTQKINAFYS 364 (442)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 6999999999998887653
No 155
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=3.3e-21 Score=145.92 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=109.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc--------------eeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATI--------------GVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTS 84 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 84 (225)
+|+|+|.+|+|||||+++|++........... +.+..............+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999876654432211 1122222222233356799999999999888888
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHH-----------
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TEDAKEFAQK----------- 151 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~----------- 151 (225)
.++..+|++++|+|+.+..... ...++..+.. .+.|+++++||+|+....... .+.+++....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 8999999999999998755433 2334444433 479999999999997522211 2223333333
Q ss_pred ---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 152 ---EGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 152 ---~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
...+++++||+++.|++++|+++.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346699999999999999999998764
No 156
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=1.8e-21 Score=148.24 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=102.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC----cCC---CCCCCcceeeeEEEEEEEC------------CEEEEEEEEeCCCchh
Q 027292 18 FKVVLIGDSAVGKSQILARFARN----EFS---LDSKATIGVEFQTRTLVIQ------------HKSVKAQIWDTAGQER 78 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~ 78 (225)
+||+++|++++|||||+++|+.. .+. .+..+..+.+.....+.+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 1112222233322222222 3367899999999876
Q ss_pred hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHH-H-----
Q 027292 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDAKEFA-Q----- 150 (225)
Q Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~-~----- 150 (225)
+........+.+|++++|+|+.+.........|. +... .+.|+++++||+|+...... ..+++++.. .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 6544445567889999999998754333322222 1121 25799999999998642211 122222211 1
Q ss_pred -HcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292 151 -KEGLFFLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 151 -~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
..+++++++||+++.|++++++++.+++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13567999999999999999999987763
No 157
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=7.4e-21 Score=166.22 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=116.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCc-------CCCCCC------CcceeeeEEEEEEE-----CCEEEEEEEEeCCCchh
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNE-------FSLDSK------ATIGVEFQTRTLVI-----QHKSVKAQIWDTAGQER 78 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~ 78 (225)
.-||+++|+.++|||||+++|+... +...+. ...++++....+.. ++..+.+.||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998742 111111 12244444433322 45668999999999999
Q ss_pred hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe---
Q 027292 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF--- 155 (225)
Q Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--- 155 (225)
|...+..++..+|++|+|+|+++..+.+....|+..+. .+.|+++|+||+|+.+.. ......++...+++.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998766666666654432 368999999999986422 223334555556653
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q 027292 156 FLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 156 ~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
++++||++|.|++++|++|.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999998765
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=4.5e-21 Score=164.45 Aligned_cols=162 Identities=24% Similarity=0.189 Sum_probs=112.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc----------hhhhhhh
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ----------ERYRAVT 83 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 83 (225)
...++|+|+|.+++|||||+++|++.... ....++++.+.....+..++. .+.+|||||. +.|..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 34699999999999999999999988653 333444445444445555444 4679999994 3344333
Q ss_pred -HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHH-HHHHcCCeEEEe
Q 027292 84 -SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDAKE-FAQKEGLFFLET 159 (225)
Q Consensus 84 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~ 159 (225)
..+++.+|++|+|+|+++..+...+. ++..+.. .+.|+|+|+||+|+.+.... ...++.. +.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 34678999999999999877766553 4444433 47899999999999752210 0111211 122233679999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHH
Q 027292 160 SALEATNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 160 Sa~~~~~v~~~f~~l~~~~~~~~ 182 (225)
||++|.|++++|+.+.+.+....
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999987765443
No 159
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=2e-21 Score=142.72 Aligned_cols=146 Identities=16% Similarity=0.113 Sum_probs=98.9
Q ss_pred EEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhcCCC
Q 027292 21 VLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA--------VTSAYYRGAV 91 (225)
Q Consensus 21 ~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d 91 (225)
+++|.+|+|||||+++|++..... ...+..+.+........ .+..+.+|||||...+.. .+...+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999865321 12222222333333333 346789999999877443 3345678899
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVENA 170 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~ 170 (225)
++++|+|..+..+.... .+...+.. .+.|+++|+||+|+.+.... .......+. .++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875433321 12222322 26899999999999753221 233334565 6899999999999999
Q ss_pred HHHHHHH
Q 027292 171 FMTVLTE 177 (225)
Q Consensus 171 f~~l~~~ 177 (225)
|+++++.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 160
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=8e-21 Score=165.32 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=112.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
....++|+++|+.++|||||+++|.+..+...+.+..+.+.....+..++. ..+.||||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 446689999999999999999999988776655554444444434433222 2789999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cC--CeEEEeccCCC
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-------EG--LFFLETSALEA 164 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~~Sa~~~ 164 (225)
|+|+|+++....+... .+......+.|+++++||+|+.+. ..+.+...... ++ .+++++||++|
T Consensus 163 ILVVda~dgv~~qT~e----~i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG 235 (587)
T TIGR00487 163 VLVVAADDGVMPQTIE----AISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG 235 (587)
T ss_pred EEEEECCCCCCHhHHH----HHHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence 9999998743222221 122222347999999999998642 23333333322 22 46999999999
Q ss_pred CCHHHHHHHHHH
Q 027292 165 TNVENAFMTVLT 176 (225)
Q Consensus 165 ~~v~~~f~~l~~ 176 (225)
.|++++|+++..
T Consensus 236 eGI~eLl~~I~~ 247 (587)
T TIGR00487 236 DGIDELLDMILL 247 (587)
T ss_pred CChHHHHHhhhh
Confidence 999999999874
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.87 E-value=3.7e-21 Score=141.99 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=99.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc-----hhhhhhhHhhhcCCCEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ-----ERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----~~~~~~~~~~~~~~d~~ 93 (225)
+|+++|.+|+|||||+++|.+... . ...+.+. .+... .+|||||. +.+..+. ..+..+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-CccceEE-------EECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence 799999999999999999876431 1 1112111 12121 26999996 2233322 347899999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--eEEEeccCCCCCHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL--FFLETSALEATNVENAF 171 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~f 171 (225)
++|+|+++..++ +..|+..+ ..+.|+++++||+|+.+ ...+.+.+++...++ +++++||+++.|++++|
T Consensus 69 l~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 69 IYVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 999999987654 23444433 13678999999999865 234566777777775 79999999999999999
Q ss_pred HHHHHHHHHH
Q 027292 172 MTVLTEIFNI 181 (225)
Q Consensus 172 ~~l~~~~~~~ 181 (225)
+++.+.+.+.
T Consensus 140 ~~l~~~~~~~ 149 (158)
T PRK15467 140 DYLASLTKQE 149 (158)
T ss_pred HHHHHhchhh
Confidence 9988776543
No 162
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=2.1e-20 Score=156.57 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=115.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----hhhhhH---hhhcCC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----YRAVTS---AYYRGA 90 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~---~~~~~~ 90 (225)
..|+|+|.++||||||+++|.+........+.++.......+.+. ....+.+||+||... ...+.. ..+..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 489999999999999999999876443333333333333233322 245789999999532 122223 335569
Q ss_pred CEEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292 91 VGAMLVYDISRR---QSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT 165 (225)
Q Consensus 91 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (225)
+++|+|+|+++. ++++.+..|..++..+.. .+.|++||+||+|+.+ ..+....+.+.++.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 677777888888877643 4789999999999843 2344566666677789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTEIFNI 181 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~ 181 (225)
|++++++++.+.+.+.
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998877654
No 163
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=8.9e-21 Score=159.63 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=112.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh--hhhh------Hhhhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY--RAVT------SAYYR 88 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~------~~~~~ 88 (225)
.++|+|+|.+|+|||||+|+|.+........+..+.+.....+...+ ...+.+|||+|..+. ...+ ...+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 46899999999999999999998765544444444555444444433 226789999997331 1222 23467
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCH
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNV 167 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 167 (225)
.+|++|+|+|++++.+.+.+..|...+......+.|+++|+||+|+.+... .... ....+.+ ++.+||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence 899999999999988777776666655555445799999999999964211 1111 1123445 588999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027292 168 ENAFMTVLTEIFNI 181 (225)
Q Consensus 168 ~~~f~~l~~~~~~~ 181 (225)
+++++++.+.+...
T Consensus 351 deL~e~I~~~l~~~ 364 (426)
T PRK11058 351 PLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999887543
No 164
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.87 E-value=2e-21 Score=135.70 Aligned_cols=156 Identities=21% Similarity=0.367 Sum_probs=124.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+.+.++|-.++|||||++.++.+.+.....|+.|..... +....+.+.+||.+|+..|+++|+.|.+.++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 5789999999999999999999999988888887766554 445778899999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVENA 170 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 170 (225)
+|+.+++.++..+..+..+.... -.+.|+++.+||.|+.+. .....+..-. ....+..|.+|+++..+++.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 99999888777665555544333 368999999999999762 3332222211 112244799999999999999
Q ss_pred HHHHHHHH
Q 027292 171 FMTVLTEI 178 (225)
Q Consensus 171 f~~l~~~~ 178 (225)
.+||++.-
T Consensus 174 ~~Wli~hs 181 (186)
T KOG0075|consen 174 LDWLIEHS 181 (186)
T ss_pred HHHHHHHh
Confidence 99998754
No 165
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=5.9e-21 Score=146.62 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=100.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEEC---------------------------C------
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQ---------------------------H------ 63 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~---------------------------~------ 63 (225)
++|+++|+.|+|||||+..+.+..... ......+.........+. .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 579999999999999999997542111 111011111111100000 0
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--C
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--P 141 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~ 141 (225)
....+.||||||++.|...+...+..+|++++|+|+.++.........+..+... . ..|+++|+||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G-LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C-CCcEEEEEEchhccCHHHHHHH
Confidence 1267899999999999888888888999999999998731111111122222222 1 2478999999999752211 1
Q ss_pred HHHHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 142 TEDAKEFAQKE---GLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 142 ~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
.+.++++.... +++++++||++|.|++++|+++.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 12233333332 56799999999999999999987643
No 166
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=7.1e-21 Score=163.25 Aligned_cols=154 Identities=21% Similarity=0.198 Sum_probs=106.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--------YRAVTSAY 86 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~ 86 (225)
..++|+|+|.+|||||||+|+|++..... ...+..+.+.....+.. .+..+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~--~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW--NGRRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE--CCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 45799999999999999999999876432 33333333333333333 344688999999652 34445667
Q ss_pred hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCC
Q 027292 87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEAT 165 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 165 (225)
++.+|++|+|+|+++..+... ..|...+.. .+.|+++|+||+|+.... .+....+ ..++ .++++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence 889999999999998655432 334444433 379999999999986421 1222222 2333 35799999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTEIFN 180 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~ 180 (225)
|++++|+++++.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988744
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=7.4e-21 Score=161.72 Aligned_cols=149 Identities=21% Similarity=0.214 Sum_probs=109.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh--------hHhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV--------TSAY 86 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~ 86 (225)
..++|+++|.+|+|||||+|+|++.... ....+.++.++....+..+ +..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3489999999999999999999987643 2333444444444445444 456899999997654322 2336
Q ss_pred hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292 87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN 166 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (225)
+..+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999998877665544433 3378999999999997532211 33456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEIFN 180 (225)
Q Consensus 167 v~~~f~~l~~~~~~ 180 (225)
++++++++.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 168
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.2e-20 Score=160.59 Aligned_cols=161 Identities=22% Similarity=0.185 Sum_probs=108.2
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh----------
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV---------- 82 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------- 82 (225)
....++|+++|.+++|||||+++|++..... ...+.++.+.....+..+ +..+.+|||||..++...
T Consensus 169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN--GKKYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC--CcEEEEEECCCccccccchhhHHHHHHH
Confidence 3456999999999999999999999875432 223333333333333333 347889999996443211
Q ss_pred -hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHHHH----cCCeE
Q 027292 83 -TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK-EFAQK----EGLFF 156 (225)
Q Consensus 83 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~ 156 (225)
....++.+|++|+|+|+.+..+.... .++..+.. .+.|+++|+||+|+.+ .....++.. .+... ..+++
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCce
Confidence 13467899999999999987665543 23333332 3789999999999973 111122222 22222 24679
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHH
Q 027292 157 LETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 157 ~~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
+++||++|.|+.++|+++.+.+...
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999876544
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=2.3e-20 Score=158.34 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=114.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----hhh---hhHhhhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----YRA---VTSAYYRG 89 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~---~~~~~~~~ 89 (225)
...|+|+|.++||||||+++|.+........+.++.......+.+ ....+.+|||||... ... .....+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~--~~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA--GDTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE--CCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 578999999999999999999987554433343333333333433 335799999999421 111 12334678
Q ss_pred CCEEEEEEeCCCh----hhHHhHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027292 90 AVGAMLVYDISRR----QSFDHIPRWLEELRSHA-----------DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL 154 (225)
Q Consensus 90 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 154 (225)
+|++|+|+|+++. +.++.+..|..++..+. ..+.|++||+||+|+.+... ..+.........++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCC
Confidence 9999999999853 35555666666665443 13689999999999975322 12233333445578
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 155 FFLETSALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 155 ~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
+++++||+++.|+++++++|.+.+...+.
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 89999999999999999999998876543
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.86 E-value=3.8e-20 Score=136.85 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=104.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHhhhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR--------AVTSAYYR 88 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~ 88 (225)
..+|+++|.+|+|||||++++.+................ ...........+.+|||||..... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR-IRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-EEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 578999999999999999999987654333222112211 122233345788999999964322 23344678
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCH
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNV 167 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 167 (225)
.+|++++|+|+.+..+. ....+...+... +.|+++|+||+|+........+....+....+ .+++++|++++.++
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 99999999999976221 122333334332 68999999999997433323333444444443 57999999999999
Q ss_pred HHHHHHHHHH
Q 027292 168 ENAFMTVLTE 177 (225)
Q Consensus 168 ~~~f~~l~~~ 177 (225)
+++|++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 171
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=2.2e-20 Score=163.11 Aligned_cols=155 Identities=16% Similarity=0.189 Sum_probs=114.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC---cCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARN---EFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
+.|+++|+.++|||||+++|.+. .++.++.++.+.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 47999999999999999999863 33444455555665555555544 78999999999999988888999999999
Q ss_pred EEEeCCC---hhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC--CHHHHHHHHHHc----CCeEEEeccCCC
Q 027292 95 LVYDISR---RQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV--PTEDAKEFAQKE----GLFFLETSALEA 164 (225)
Q Consensus 95 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 164 (225)
+|+|+++ +++.+.+ ..+.. .+.| +++|+||+|+.+.... ..+++..+.... +++++++|+++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999997 3344332 22222 2677 9999999999753321 123445555544 467999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTEIFNI 181 (225)
Q Consensus 165 ~~v~~~f~~l~~~~~~~ 181 (225)
.|++++++++...+...
T Consensus 152 ~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 152 QGIGELKKELKNLLESL 168 (581)
T ss_pred CCchhHHHHHHHHHHhC
Confidence 99999999887765543
No 172
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=2.3e-20 Score=164.87 Aligned_cols=158 Identities=21% Similarity=0.213 Sum_probs=113.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceee--eEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVE--FQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
....++|+|+|+.++|||||+++|....+.....+..+.+ .+...+...+....+.||||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4567899999999999999999999877655444333322 22223333345688999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-------HHHcC--CeEEEeccC
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF-------AQKEG--LFFLETSAL 162 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~ 162 (225)
++|+|+|+++....+....| ......+.|+|+++||+|+.... .+.+... ...++ ++++++||+
T Consensus 321 iaILVVDA~dGv~~QT~E~I----~~~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAI----NYIQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred EEEEEEECcCCCChhhHHHH----HHHHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 99999999874322222222 12223479999999999997522 2222221 22233 679999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLTEI 178 (225)
Q Consensus 163 ~~~~v~~~f~~l~~~~ 178 (225)
+|.|++++|+++....
T Consensus 394 tG~GIdeLle~I~~l~ 409 (742)
T CHL00189 394 QGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCHHHHHHhhhhhh
Confidence 9999999999887753
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.86 E-value=4.4e-20 Score=140.91 Aligned_cols=157 Identities=16% Similarity=0.208 Sum_probs=104.7
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc----------hhhhhh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ----------ERYRAV 82 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~ 82 (225)
..+..++|+|+|.+|+|||||+++|++..+.....++.+.+........ ...+.+|||||. +.+..+
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 4557799999999999999999999987644444444444333322222 367899999993 344445
Q ss_pred hHhhhcCC---CEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHHcCCe
Q 027292 83 TSAYYRGA---VGAMLVYDISRRQSFDH--IPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TEDAKEFAQKEGLF 155 (225)
Q Consensus 83 ~~~~~~~~---d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 155 (225)
...++..+ +++++|+|..+..+... +..|+ .. .+.|+++++||+|+.+..... .+.+..........
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE 170 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 55555544 67888899876433222 22222 21 368899999999986532211 12233444434578
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q 027292 156 FLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 156 ~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
++++|++++.|++++++.+.+.+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999887654
No 174
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.85 E-value=2.4e-20 Score=140.59 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=98.7
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc----------hhhhh
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ----------ERYRA 81 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~ 81 (225)
.+++..++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||. +.+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 3567789999999999999999999998764333333333333333333332 6899999994 23444
Q ss_pred hhHhhhc---CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC--C
Q 027292 82 VTSAYYR---GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEG--L 154 (225)
Q Consensus 82 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~ 154 (225)
+...+++ .+|++++|+|+++..+.... .++..+.. .+.|+++++||+|+.+... ...+++++.....+ .
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 4445554 35899999999875443333 22333332 3789999999999864211 12333445555543 4
Q ss_pred eEEEeccCCCCCHH
Q 027292 155 FFLETSALEATNVE 168 (225)
Q Consensus 155 ~~~~~Sa~~~~~v~ 168 (225)
.+|++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 69999999999873
No 175
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=4.5e-20 Score=164.31 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=112.1
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
.....+.|+|+|+.++|||||+++|....+.....+..+.+.....+..+ +..+.||||||++.|..++...+..+|+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCE
Confidence 35678999999999999999999998877655444433333333333333 4678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-------HHHHcC--CeEEEeccCC
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE-------FAQKEG--LFFLETSALE 163 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~ 163 (225)
+|||||+++....+.. ..+......++|+||++||+|+.+. ..+.+.. +...++ ++++++||++
T Consensus 364 aILVVdAddGv~~qT~----e~i~~a~~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 364 VVLVVAADDGVMPQTI----EAINHAKAAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEEEEECCCCCCHhHH----HHHHHHHhcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 9999999874222221 2222222347999999999999652 1222211 123333 6799999999
Q ss_pred CCCHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTE 177 (225)
Q Consensus 164 ~~~v~~~f~~l~~~ 177 (225)
|.|++++|++|...
T Consensus 437 G~GI~eLle~I~~~ 450 (787)
T PRK05306 437 GEGIDELLEAILLQ 450 (787)
T ss_pred CCCchHHHHhhhhh
Confidence 99999999998753
No 176
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=8.8e-20 Score=135.96 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=102.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh----------hh-hhH
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY----------RA-VTS 84 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~-~~~ 84 (225)
.++|+++|.+|+|||||+++|++..... ...+..+.......+..+ +..+.+|||||.... .. ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999999875432 222222223322333333 345789999996432 11 112
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHHc----CCeEEEe
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED-AKEFAQKE----GLFFLET 159 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~~~~~~ 159 (225)
..+..+|++++|+|+.++.+.... .++..+.. .+.|+++++||+|+.+......+. ...+.+.+ ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 356789999999999987664432 23333322 368999999999997643222222 22233333 3679999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027292 160 SALEATNVENAFMTVLTE 177 (225)
Q Consensus 160 Sa~~~~~v~~~f~~l~~~ 177 (225)
|++++.|+.++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 177
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.9e-21 Score=139.33 Aligned_cols=164 Identities=30% Similarity=0.551 Sum_probs=144.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++++++|+.|.|||+++++.+.+++...+.++.+.+.....+.-+...+.+..|||.|++.+..+.-.++-+...+|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 57899999999999999999999999999999999999998877766555799999999999999998888888999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
++||+....++..+.+|...+...+. ++|+++++||.|.... . .....-.+-+..++.||++|++.+-++..-|.|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r-~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKAR-K-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceecccc-c-cccccceeeecccceeEEeecccccccccchHHH
Confidence 99999999999999999999988887 6999999999998652 2 2233444556678889999999999999999999
Q ss_pred HHHHHHH
Q 027292 175 LTEIFNI 181 (225)
Q Consensus 175 ~~~~~~~ 181 (225)
.+.+.-.
T Consensus 165 arKl~G~ 171 (216)
T KOG0096|consen 165 ARKLTGD 171 (216)
T ss_pred hhhhcCC
Confidence 9887543
No 178
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=6.8e-20 Score=148.40 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=104.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh--------hhhhHhhhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY--------RAVTSAYYR 88 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 88 (225)
.-.|+|+|.+|||||||+|+|++...........++......+.. .....+.+|||||.... .......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~-~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT-EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE-cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 456999999999999999999988765444333222222222222 23478999999995332 223344678
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCH
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG-LFFLETSALEATNV 167 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 167 (225)
.+|++++|+|+++..+. ....++..+. ..+.|+++|+||+|+.............+....+ ..++++||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 99999999999872221 1122223332 2368999999999997422222333444544444 56999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 168 ENAFMTVLTEI 178 (225)
Q Consensus 168 ~~~f~~l~~~~ 178 (225)
+++++++.+.+
T Consensus 160 ~~L~~~L~~~l 170 (292)
T PRK00089 160 DELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHhC
Confidence 99999988765
No 179
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=1.2e-19 Score=151.15 Aligned_cols=163 Identities=16% Similarity=0.087 Sum_probs=114.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRG 89 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 89 (225)
...|.|+|.|+||||||+|+|.+........+.++.......+.. .....+.++||||... ........+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~-~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV-DDERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe-CCCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 348999999999999999999987654443343333333333333 2234689999999532 11112235778
Q ss_pred CCEEEEEEeCC---ChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEeccC
Q 027292 90 AVGAMLVYDIS---RRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG--LFFLETSAL 162 (225)
Q Consensus 90 ~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 162 (225)
+|++++|+|++ +...++.+..|++.+..+.. .+.|+++|+||+|+..... ..+.++++....+ .+++++||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999988 45567777788888776542 3689999999999965322 2233444555544 368999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 163 ~~~~v~~~f~~l~~~~~~~ 181 (225)
++.++++++++|.+.+.+.
T Consensus 317 tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCcCHHHHHHHHHHHhhhC
Confidence 9999999999998877543
No 180
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.84 E-value=1.8e-19 Score=138.31 Aligned_cols=117 Identities=19% Similarity=0.328 Sum_probs=87.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC-CEEEEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA-VGAMLVY 97 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~i~v~ 97 (225)
+|+++|++|||||+|+++|....+...+.++ ............+....+.+||+||++++...+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998765554332 2222221111123467799999999999998888899998 9999999
Q ss_pred eCCCh-hhHHhHHHHHHHHHhh---cCCCCcEEEEEeCCCCCC
Q 027292 98 DISRR-QSFDHIPRWLEELRSH---ADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 98 d~~~~-~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~ 136 (225)
|+.+. .++.....|+..+... ...+.|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 6677766665544322 225899999999999864
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=1.5e-20 Score=142.83 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=106.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC------------------CCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS------------------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (225)
+..+|+++|+.++|||||+.+|+........ ....+................+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999864321111 1122222222222223567789999999999
Q ss_pred hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHH-HHHHHc---
Q 027292 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAK-EFAQKE--- 152 (225)
Q Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~-~~~~~~--- 152 (225)
.|.......+..+|++|+|+|+.+...... .+.+..+.. .+.|+++++||+|+...+.. ..++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 999888888999999999999997533322 222333333 37889999999998721100 011111 232332
Q ss_pred ---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 153 ---GLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 153 ---~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
.++++++||.+|.|+.++++.+.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 25699999999999999999887653
No 182
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=7.5e-20 Score=159.93 Aligned_cols=146 Identities=21% Similarity=0.217 Sum_probs=109.1
Q ss_pred cCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh------hHhhh--cCCCEEEE
Q 027292 24 GDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV------TSAYY--RGAVGAML 95 (225)
Q Consensus 24 G~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~~i~ 95 (225)
|.+|+|||||+|++.+........+..+.+.....+.+++ ..+.+|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999877666666655555555555544 45789999998776543 33333 37899999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
|+|.++.+. ...+...+ ...+.|+++|+||+|+.+..... .+.+.+.+.++++++++||++|.|++++++++.
T Consensus 79 VvDat~ler---~l~l~~ql---~~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQL---LELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHHH---HhcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987432 12223333 23479999999999997644443 346788888999999999999999999999998
Q ss_pred HHH
Q 027292 176 TEI 178 (225)
Q Consensus 176 ~~~ 178 (225)
+.+
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 754
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=2.3e-19 Score=152.98 Aligned_cols=146 Identities=22% Similarity=0.192 Sum_probs=103.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhhhc
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--------YRAVTSAYYR 88 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 88 (225)
++|+|+|.+|||||||+++|.+.... ....+..+.+.....+..++ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 22233333444444444433 7899999999876 2333455788
Q ss_pred CCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCC
Q 027292 89 GAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEAT 165 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 165 (225)
.+|++|+|+|+.+..+.. .+..|+... +.|+++|+||+|+.+. .....++ ..+++. ++++||.+|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998743322 234444322 7899999999997541 1222233 345664 8999999999
Q ss_pred CHHHHHHHHHH
Q 027292 166 NVENAFMTVLT 176 (225)
Q Consensus 166 ~v~~~f~~l~~ 176 (225)
|+.++|+++..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999887
No 184
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.1e-19 Score=123.77 Aligned_cols=156 Identities=22% Similarity=0.447 Sum_probs=122.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..++|+.+|-.++||||++..|.-+.. ....||.|......+ ...+.+.+||..|++..+..|.+|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 378999999999999999999987654 455566565555433 367789999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVEN 169 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 169 (225)
|+|..+.+.++..+..+..+.+.. ..+.|+++.+||.|+++ ...+.++..... .....+.++++.+|.++.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 999998877777655444444333 25789999999999986 345566555432 2234578999999999999
Q ss_pred HHHHHHHHH
Q 027292 170 AFMTVLTEI 178 (225)
Q Consensus 170 ~f~~l~~~~ 178 (225)
-|.|+.+.+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999998764
No 185
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.83 E-value=2.4e-19 Score=156.94 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=114.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCc--CCC-----CC------CCcceeeeEEEEEEE-----CCEEEEEEEEeCCCc
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNE--FSL-----DS------KATIGVEFQTRTLVI-----QHKSVKAQIWDTAGQ 76 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~ 76 (225)
++.-+|+|+|+.++|||||+.+|+... +.. .. ....+++.....+.+ ++..+.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345689999999999999999998632 110 00 112233333322222 455789999999999
Q ss_pred hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-
Q 027292 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF- 155 (225)
Q Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 155 (225)
..|...+..++..+|++|+|+|+++....+....|.... ..+.|+++|+||+|+.... ......++...+++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence 999999999999999999999999865555555554432 2378999999999986422 122234454555654
Q ss_pred --EEEeccCCCCCHHHHHHHHHHHHH
Q 027292 156 --FLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 156 --~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
++++||++|.|+.+++++|.+.+-
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 899999999999999999987764
No 186
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=2.3e-19 Score=140.48 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=110.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--------YRAVTSAYY 87 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 87 (225)
..--|+++|.|+||||||+|++++......+....++......+.. ....++.|+||||.-. ........+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t-~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT-TDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE-cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 3456899999999999999999999988777766655555555544 3478999999999322 222334467
Q ss_pred cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCC
Q 027292 88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATN 166 (225)
Q Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 166 (225)
..+|+++||+|+++.-... ....++.+.. .+.|+++++||+|..............+.....+ .++++||+.|.+
T Consensus 84 ~dvDlilfvvd~~~~~~~~-d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 84 KDVDLILFVVDADEGWGPG-DEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred ccCcEEEEEEeccccCCcc-HHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 8999999999999733221 1222333433 3689999999999876433222223333333333 499999999999
Q ss_pred HHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEI 178 (225)
Q Consensus 167 v~~~f~~l~~~~ 178 (225)
++.+.+.+...+
T Consensus 160 ~~~L~~~i~~~L 171 (298)
T COG1159 160 VDTLLEIIKEYL 171 (298)
T ss_pred HHHHHHHHHHhC
Confidence 999988776654
No 187
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83 E-value=1.6e-19 Score=132.29 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=102.2
Q ss_pred EEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhcCCCEE
Q 027292 22 LIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-------AVTSAYYRGAVGA 93 (225)
Q Consensus 22 vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~~ 93 (225)
|+|.+|+|||||++++++.... ....+..+.......... .....+.+||+||...+. .....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL-GPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe-cCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986554 233333222322222222 125689999999966543 2344578899999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE---DAKEFAQKEGLFFLETSALEATNVENA 170 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 170 (225)
++|+|..+........ |..... ..+.|+++|+||+|+......... .........+.+++++|+.++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876655443 333332 247899999999998753322211 112223334577999999999999999
Q ss_pred HHHHHHH
Q 027292 171 FMTVLTE 177 (225)
Q Consensus 171 f~~l~~~ 177 (225)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998764
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=3e-19 Score=151.96 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=103.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCcceeeeEEEEEEECCEEEEEEEEeCCCc--------hhhhhhhHhhhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLD-SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ--------ERYRAVTSAYYRG 89 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~ 89 (225)
+|+|+|.+|||||||+|+|.+...... ..+..+.+.....+.. .+..+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW--GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE--CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998764322 2233233333333333 3456999999995 3445556677899
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVE 168 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 168 (225)
+|++++|+|+.+..+... ..+...+++ .+.|+++|+||+|+.+.... ..+ ...+++ .++++||..|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 999999999987433222 122222332 27899999999998753321 122 345666 59999999999999
Q ss_pred HHHHHHHHHH
Q 027292 169 NAFMTVLTEI 178 (225)
Q Consensus 169 ~~f~~l~~~~ 178 (225)
++++++.+.+
T Consensus 150 ~ll~~i~~~l 159 (429)
T TIGR03594 150 DLLDAILELL 159 (429)
T ss_pred HHHHHHHHhc
Confidence 9999988765
No 189
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=7.3e-19 Score=157.25 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=114.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh----------hHhh
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV----------TSAY 86 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~ 86 (225)
.++|+++|.+|+|||||+|+|.+........+ +++.......+...+..+.+|||||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 46899999999999999999998765444443 34555555555667788999999998765421 1223
Q ss_pred h--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292 87 Y--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA 164 (225)
Q Consensus 87 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (225)
+ ..+|++++|+|+++.+.. .+|...+.+. +.|+++++||+|+.+.+.. ....+++.+.++++++++|+.++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2 478999999999875432 2344444443 7999999999999764443 34567888889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTEI 178 (225)
Q Consensus 165 ~~v~~~f~~l~~~~ 178 (225)
+|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999998887653
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=7.5e-19 Score=157.37 Aligned_cols=165 Identities=23% Similarity=0.178 Sum_probs=110.5
Q ss_pred CCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------
Q 027292 6 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER------- 78 (225)
Q Consensus 6 ~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 78 (225)
+++...-......+|+|+|.++||||||+|+|++........ ..+.+...........+..+.+|||||.+.
T Consensus 264 ~~~~~~~~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~-~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~ 342 (712)
T PRK09518 264 VAGDEKAGPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVED-TPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDS 342 (712)
T ss_pred ccCccccccccCcEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHH
Confidence 344554555667899999999999999999999875432221 223333333333333456789999999653
Q ss_pred -hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eE
Q 027292 79 -YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FF 156 (225)
Q Consensus 79 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~ 156 (225)
+......++..+|++|+|+|+.+..+.. -..|...++. .+.|+++|+||+|+.... .....+ ...+. ..
T Consensus 343 ~~~~~~~~~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~ 413 (712)
T PRK09518 343 AIASQAQIAVSLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEP 413 (712)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHH-HHcCCCCe
Confidence 3344556788999999999998632211 1244455543 379999999999986421 112222 12333 26
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHH
Q 027292 157 LETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 157 ~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
+++||++|.|++++|+++++.+..
T Consensus 414 ~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 414 YPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred EEEECCCCCCchHHHHHHHHhccc
Confidence 799999999999999999987743
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=9.9e-19 Score=149.05 Aligned_cols=160 Identities=22% Similarity=0.234 Sum_probs=105.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----------hhhh-
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----------YRAV- 82 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~- 82 (225)
...++|+|+|.+|+|||||+++|++.... ....+. ++.......+...+..+.+|||||... |...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG--TTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--ceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 45799999999999999999999986532 222333 233332322323445678999999532 2211
Q ss_pred hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH----cCCeEEE
Q 027292 83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK----EGLFFLE 158 (225)
Q Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (225)
...++..+|++|+|+|+.+..+.... .++..+.+ .+.|+++|+||+|+.+... ..+....+... ..+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence 22467899999999999987665443 23333332 3689999999999874211 11111122222 2467999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHH
Q 027292 159 TSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 159 ~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
+||+++.|+.++|+.+.+.....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988766544
No 192
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=8.5e-19 Score=124.82 Aligned_cols=135 Identities=24% Similarity=0.300 Sum_probs=99.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----chhhhhhhHhhhcCCCEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG----QERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~~i 94 (225)
||+|+|+.|+|||||+++|.+.+. .+..|..+.+.. .++|||| +..|..........+|+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999988654 444443333221 3589999 3344444555667999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMT 173 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~f~~ 173 (225)
+|.|++++.+.-. .. +... .+.|+|-|+||+|+... ....+.++++.+..|+. +|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-P~----fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-PG----FASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-ch----hhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998643221 11 1111 26899999999999842 33566778888888886 899999999999999988
Q ss_pred HH
Q 027292 174 VL 175 (225)
Q Consensus 174 l~ 175 (225)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 193
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.81 E-value=2.1e-21 Score=140.80 Aligned_cols=170 Identities=34% Similarity=0.610 Sum_probs=145.1
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
..+..++++|+|..|+|||+++.++....+...|..+++.++..+...-+. .-+++++||+.|+++|..+..-+++.++
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 367889999999999999999999999999999999988888877765433 4567899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHHcCCe-EEEeccCCCC
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVP-TEDAKEFAQKEGLF-FLETSALEAT 165 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~-~~~~Sa~~~~ 165 (225)
+.++|||+++.-+++....|.+.+..... ...|+++..||+|........ ...+..+.+++|+. ++++|++.+.
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 99999999999999999999998765442 346789999999997633222 35677888889876 9999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTEIFNIV 182 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~~ 182 (225)
++.++-..+++.++..-
T Consensus 181 ni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVND 197 (229)
T ss_pred ChhHHHHHHHHHHHhhc
Confidence 99999999998887663
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=5.2e-19 Score=150.13 Aligned_cols=157 Identities=18% Similarity=0.150 Sum_probs=104.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC-----------------------------CCCcceeeeEEEEEEECCE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLD-----------------------------SKATIGVEFQTRTLVIQHK 64 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 64 (225)
....++|+++|++++|||||+++|+...-... .....+++.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 45679999999999999999999984321110 0112344444455555667
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC----
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQRA---- 139 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---- 139 (225)
.+.+.+|||||++.|.......+..+|++|+|+|+++....... ..++..+... . ..|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHH
Confidence 78899999999998876666667899999999999863222221 2222222222 2 246899999999975211
Q ss_pred CCHHHHHHHHHHcC-----CeEEEeccCCCCCHHHHHH
Q 027292 140 VPTEDAKEFAQKEG-----LFFLETSALEATNVENAFM 172 (225)
Q Consensus 140 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~f~ 172 (225)
...+++..+....+ ++++++||++|.|+.+.++
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11234455555555 4699999999999987553
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=3.2e-18 Score=153.30 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=108.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch----------hhhhhh-
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE----------RYRAVT- 83 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~- 83 (225)
..++|+|+|.+|||||||+|+|++.... ....+.++.+.....+.+++. .+.+|||||.. .|..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999998753 233333344444444444443 46699999942 232222
Q ss_pred HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-HHHHc----CCeEEE
Q 027292 84 SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE-FAQKE----GLFFLE 158 (225)
Q Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~ 158 (225)
...++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.+... .+.... +...+ .+++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 23478999999999999877766554 3333333 3789999999999975211 122222 22221 245799
Q ss_pred eccCCCCCHHHHHHHHHHHHHHH
Q 027292 159 TSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 159 ~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
+||++|.|++++|+.+.+.+.+.
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998877653
No 196
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.80 E-value=9.2e-19 Score=152.85 Aligned_cols=156 Identities=15% Similarity=0.227 Sum_probs=112.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC--cCCCCC------------CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Q 027292 19 KVVLIGDSAVGKSQILARFARN--EFSLDS------------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTS 84 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 84 (225)
+|+|+|+.++|||||+++|+.. .+.... ....+++.......+.+.++.+.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 221111 12234555555555566778999999999999999999
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HcCCeE
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQ-------KEGLFF 156 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~ 156 (225)
.++..+|++++|+|+.+.. ..+...|+..+... +.|+++|+||+|+.+.+.. ..+++..+.. +..+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999998632 23345566655543 7899999999998653321 1233333332 235679
Q ss_pred EEeccCCCC----------CHHHHHHHHHHHH
Q 027292 157 LETSALEAT----------NVENAFMTVLTEI 178 (225)
Q Consensus 157 ~~~Sa~~~~----------~v~~~f~~l~~~~ 178 (225)
+.+||++|. ++..+|+.+++.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999995 7888888877665
No 197
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=1.9e-18 Score=150.32 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=103.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc----eeeeEEEEEEE------------CCEEEEEEEEeCCCchhhh
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATI----GVEFQTRTLVI------------QHKSVKAQIWDTAGQERYR 80 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~l~Dt~G~~~~~ 80 (225)
..-|+++|++++|||||+++|.+..+......+. +..+....... ......+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3569999999999999999999876644332211 11111111100 0011238899999999999
Q ss_pred hhhHhhhcCCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC------------CHHH-
Q 027292 81 AVTSAYYRGAVGAMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV------------PTED- 144 (225)
Q Consensus 81 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~------------~~~~- 144 (225)
.++..+++.+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+...+.. ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999999999999999999987 34443322 2222 37899999999999642110 0000
Q ss_pred -----------HHHHHH------------Hc--CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 145 -----------AKEFAQ------------KE--GLFFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 145 -----------~~~~~~------------~~--~~~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
...+.. .+ .++++++||++|+|+++++.++.....+
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 001111 11 2579999999999999999988765544
No 198
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.5e-19 Score=127.38 Aligned_cols=160 Identities=21% Similarity=0.356 Sum_probs=120.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC------cCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARN------EFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR 88 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 88 (225)
..+.|+|+|..++|||||+.++-.. ..+ ..-.++.+.... ++.+ ....+.+||..|++..+++|..++.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v--~~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEV--CNAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceee--ccceeEEEEcCChHHHHHHHHHHHH
Confidence 3578999999999999999887431 111 112233333332 2323 2567899999999999999999999
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH------HcCCeEEEecc
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ------KEGLFFLETSA 161 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa 161 (225)
.+|++|++||+++++-++.....++.+.... ..+.|+++.+||.|+.+ ....+++..... ....++.++||
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~--~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN--AMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh--hhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 9999999999999988888776666654443 36899999999999975 333444443332 23466999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 027292 162 LEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 162 ~~~~~v~~~f~~l~~~~~~~ 181 (225)
.+|+||++-.+|++..+.++
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999988776
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.80 E-value=1.4e-18 Score=147.43 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=105.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC--cCCC---------------------------CCCCcceeeeEEEEEEECCE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN--EFSL---------------------------DSKATIGVEFQTRTLVIQHK 64 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 64 (225)
....++|+++|+.++|||||+.+|+.. .... ......+.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 456799999999999999999999852 1110 00111233444444445566
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC---
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQRAV--- 140 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--- 140 (225)
.+.+.+|||||++.|.......+..+|++|+|+|+++.++..... .+...+..... ..|+++++||+|+.+....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHHHH
Confidence 788999999999998777777788999999999999874321111 11111222222 3579999999999642111
Q ss_pred -CHHHHHHHHHHcC-----CeEEEeccCCCCCHHHHH
Q 027292 141 -PTEDAKEFAQKEG-----LFFLETSALEATNVENAF 171 (225)
Q Consensus 141 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~f 171 (225)
..++++.+++..+ ++++++||++|.|+.+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1234556666655 569999999999998754
No 200
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=3.3e-18 Score=126.77 Aligned_cols=150 Identities=17% Similarity=0.243 Sum_probs=97.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHhhhc
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE----------RYRAVTSAYYR 88 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~ 88 (225)
.|+++|.+|+|||||++.+.+..+.....++.+.+.....+..+. .+.+|||||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996555444444444444443333332 88999999942 23444444444
Q ss_pred ---CCCEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHH--HcCCeEEEe
Q 027292 89 ---GAVGAMLVYDISRRQ--SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TEDAKEFAQ--KEGLFFLET 159 (225)
Q Consensus 89 ---~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~--~~~~~~~~~ 159 (225)
..+++++++|..+.. ....+..|+... +.|+++++||+|+....... ........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 457889999987653 222334444332 58999999999985422111 111222222 234569999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027292 160 SALEATNVENAFMTVLTE 177 (225)
Q Consensus 160 Sa~~~~~v~~~f~~l~~~ 177 (225)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 201
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=1.6e-17 Score=121.00 Aligned_cols=159 Identities=25% Similarity=0.393 Sum_probs=117.0
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCC--------CCCCC--cceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFS--------LDSKA--TIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV 82 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 82 (225)
.+-...+|+|.|+.++||||+++++...... ..+.. .++.......+.+ ..+..+++++||||++|.-+
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~-~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL-DEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE-cCcceEEEecCCCcHHHHHH
Confidence 3456789999999999999999999875431 11111 1122222222222 23467899999999999999
Q ss_pred hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEec
Q 027292 83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE--GLFFLETS 160 (225)
Q Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~S 160 (225)
|..+.+.++++|+++|.+.+.++ .....+..+... . ..|++|++||.|+.+. ...+.++++.... ..+.++.+
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~-~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-N-PIPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-c-CCCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeeee
Confidence 99999999999999999998887 444444444333 2 2999999999999863 4566666665544 78899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 027292 161 ALEATNVENAFMTVLTE 177 (225)
Q Consensus 161 a~~~~~v~~~f~~l~~~ 177 (225)
+.++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999988877654
No 202
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.79 E-value=1.1e-18 Score=134.55 Aligned_cols=148 Identities=24% Similarity=0.212 Sum_probs=95.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------------------------CCcceeeeEEEEEEECCEEEEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDS-----------------------------KATIGVEFQTRTLVIQHKSVKAQ 69 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 69 (225)
||+|+|++++|||||+++|+...-.... ....+++.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999763221110 00122333333344445667889
Q ss_pred EEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC----CHHHH
Q 027292 70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV----PTEDA 145 (225)
Q Consensus 70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~ 145 (225)
+|||||++.|.......+..+|++|+|+|+.+...... ......+... . ..++|+|+||+|+.+.... ...++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 99999999887666777899999999999986432111 1112222221 1 2457888999998642211 11234
Q ss_pred HHHHHHcCC---eEEEeccCCCCCHHH
Q 027292 146 KEFAQKEGL---FFLETSALEATNVEN 169 (225)
Q Consensus 146 ~~~~~~~~~---~~~~~Sa~~~~~v~~ 169 (225)
+.+...++. +++++||++|.|+.+
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 455555663 489999999999875
No 203
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=7.9e-18 Score=146.94 Aligned_cols=159 Identities=13% Similarity=0.178 Sum_probs=113.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc--CcCCCC------------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFAR--NEFSLD------------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA 81 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 81 (225)
..-+|+|+|+.++|||||+++|+. +.+... ...+.+++.......+.+.++.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457899999999999999999987 332221 123456667766667777889999999999999999
Q ss_pred hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HcC
Q 027292 82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQ-------KEG 153 (225)
Q Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~ 153 (225)
.+..+++.+|++|+|+|+.+..... ...++..+.. .+.|.++++||+|+...+.. ..+++..+.. +..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 9999999999999999998743322 2233333333 37889999999998653221 1233333332 234
Q ss_pred CeEEEeccCCCC----------CHHHHHHHHHHHH
Q 027292 154 LFFLETSALEAT----------NVENAFMTVLTEI 178 (225)
Q Consensus 154 ~~~~~~Sa~~~~----------~v~~~f~~l~~~~ 178 (225)
++++.+||.+|. ++..+|+.+++.+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 679999999998 4677776655544
No 204
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=9.2e-18 Score=127.77 Aligned_cols=148 Identities=19% Similarity=0.182 Sum_probs=99.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCC------C--------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFS------L--------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV 82 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 82 (225)
.++|+++|+.++|||||+++|++.... . ......+++.......+......+.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 479999999999999999999863100 0 01112334444455556666778899999999988887
Q ss_pred hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-----
Q 027292 83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV---PTEDAKEFAQKEG----- 153 (225)
Q Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~----- 153 (225)
....+..+|++++|+|+....... ....+..+... +.| +|+++||+|+...... ..+++..+....+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 788889999999999998643222 22233333332 566 7788999998632211 1123444444443
Q ss_pred CeEEEeccCCCCCHH
Q 027292 154 LFFLETSALEATNVE 168 (225)
Q Consensus 154 ~~~~~~Sa~~~~~v~ 168 (225)
++++++||.+|.+..
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999998853
No 205
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=3.6e-18 Score=140.73 Aligned_cols=148 Identities=19% Similarity=0.133 Sum_probs=104.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCchhh---------hhhhHhhh
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY---------RAVTSAYY 87 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 87 (225)
..|+++|.|+||||||+|+|++........ |..+-+... -.....+..+.++||+|.+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y--~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIY--GDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCcc--ceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 679999999999999999999987665443 333333333 333345566999999995531 22345567
Q ss_pred cCCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCC
Q 027292 88 RGAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEA 164 (225)
Q Consensus 88 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 164 (225)
..||++|||+|....-+.+ .+..|+. ..+.|+++|+||+|-.. .+........+|+. ++.+||..|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg 150 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHG 150 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhc
Confidence 8999999999998743322 2333332 22799999999999652 23333334455654 999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTEI 178 (225)
Q Consensus 165 ~~v~~~f~~l~~~~ 178 (225)
.|+.++++.++..+
T Consensus 151 ~Gi~dLld~v~~~l 164 (444)
T COG1160 151 RGIGDLLDAVLELL 164 (444)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999888876
No 206
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.78 E-value=3e-17 Score=128.41 Aligned_cols=151 Identities=23% Similarity=0.225 Sum_probs=100.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhcCCC
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-------AVTSAYYRGAV 91 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 91 (225)
+|+++|.+|+|||||+++|.+........+..+.+.....+.+ .+..+++||+||..... ......++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY--KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE--CCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999999987643333333233333333333 34678999999964322 22345788999
Q ss_pred EEEEEEeCCChh-hHHhHHHHHHH-----------------------------------------HHhh-----------
Q 027292 92 GAMLVYDISRRQ-SFDHIPRWLEE-----------------------------------------LRSH----------- 118 (225)
Q Consensus 92 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------~~~~----------- 118 (225)
++++|+|+++.. ..+.+...+.. +.++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 33333222211 1111
Q ss_pred -----------c--CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 119 -----------A--DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 119 -----------~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
. ..-.|+++|+||+|+.. .++...++.. ..++++||+++.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 01268999999999853 3444455443 3589999999999999999888754
No 207
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.78 E-value=1e-17 Score=147.00 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=104.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC---cCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARN---EFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
-|.++|+.++|||||+++|.+. .+..+..+..+++.....+.. ..+..+.+|||||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~-~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQ-PDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEec-CCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 5889999999999999999863 333344344444443333322 123458999999999998877888999999999
Q ss_pred EEeCCCh---hhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCC--HHHHHHHHHHcC---CeEEEeccCCCCC
Q 027292 96 VYDISRR---QSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVP--TEDAKEFAQKEG---LFFLETSALEATN 166 (225)
Q Consensus 96 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~ 166 (225)
|+|+++. .+.+. +..+... +.| +++|+||+|+.+..... .+++.++....+ ++++++|+++|.|
T Consensus 81 VVda~eg~~~qT~eh----l~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 81 VVACDDGVMAQTREH----LAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEECCCCCcHHHHHH----HHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 9999873 33322 2222222 455 57899999997532211 233444544444 6799999999999
Q ss_pred HHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEI 178 (225)
Q Consensus 167 v~~~f~~l~~~~ 178 (225)
++++++.|.+..
T Consensus 154 I~~L~~~L~~~~ 165 (614)
T PRK10512 154 IDALREHLLQLP 165 (614)
T ss_pred CHHHHHHHHHhh
Confidence 999999887654
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.78 E-value=4.7e-18 Score=143.23 Aligned_cols=162 Identities=19% Similarity=0.173 Sum_probs=104.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCcceeeeEEEE------------------EEECC------EEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFS---LDSKATIGVEFQTRT------------------LVIQH------KSVK 67 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~---~~~~~~~~~~~~~~~------------------~~~~~------~~~~ 67 (225)
...++|+++|+.++|||||+++|.+.... .+.....+....... ...+. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45789999999999999999999753211 111111111111000 00011 1467
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHH
Q 027292 68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDA 145 (225)
Q Consensus 68 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~ 145 (225)
+.+|||||+++|...+......+|++++|+|+++.....+..+.+..+.. .. ..|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IG-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 89999999999988888888899999999999964311222222333322 22 3568999999999753211 12333
Q ss_pred HHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 146 KEFAQKE---GLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 146 ~~~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
..+.... +++++++||++|.|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 3443332 57799999999999999999998754
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.78 E-value=6e-18 Score=142.55 Aligned_cols=164 Identities=19% Similarity=0.181 Sum_probs=104.7
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCcceeeeEEEEEE------------------EC------CE
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFS---LDSKATIGVEFQTRTLV------------------IQ------HK 64 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~---~~~~~~~~~~~~~~~~~------------------~~------~~ 64 (225)
+...+.++|+++|+.++|||||+.+|.+.-.. .+.....+......... .+ ..
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 45667799999999999999999999653111 11111222221110000 00 01
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP-- 141 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-- 141 (225)
...+.+|||||++.|..........+|++++|+|+.++. ..+.... +..+... . ..|+++|+||+|+.+.....
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~-~-i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII-G-IKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc-C-CCcEEEEEEeeccccchhHHHH
Confidence 367899999999998877777777889999999999643 1111122 2222221 1 24689999999997532211
Q ss_pred HHHHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 142 TEDAKEFAQKE---GLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 142 ~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
.+++..+.... +.+++++||+++.|+++++++|.+.+
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 23344444332 46799999999999999999987765
No 210
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=1.7e-17 Score=130.09 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=82.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLD----------------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV 82 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 82 (225)
+|+++|+.|+|||||+++|+...-... .....+.+.......+.+.+..+.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 689999999999999999976321100 0112233344444455566788999999999999888
Q ss_pred hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
+..+++.+|++++|+|+.+.... ....|+..+... +.|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence 88999999999999999975432 334555555443 78999999999985
No 211
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=1.3e-18 Score=146.06 Aligned_cols=164 Identities=24% Similarity=0.305 Sum_probs=127.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...+||+++|+.|+||||||-.++..++....++... ............+...+.|++..+.-+.....-+++||++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 3569999999999999999999999998777654422 11111333445667899999977766666677899999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHHcC-Ce-EEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHI-PRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTED-AKEFAQKEG-LF-FLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~~-~~~~Sa~~~~~v~ 168 (225)
+||+.+++++++.+ ..|+..+++... .++|+|||+||+|..+....+.+. +..++.++. +. -++|||++..++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS 164 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence 99999999999998 679999988873 589999999999997655543333 444555544 22 6899999999999
Q ss_pred HHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFN 180 (225)
Q Consensus 169 ~~f~~l~~~~~~ 180 (225)
++|.+..+.++.
T Consensus 165 e~fYyaqKaVih 176 (625)
T KOG1707|consen 165 ELFYYAQKAVIH 176 (625)
T ss_pred hhhhhhhheeec
Confidence 999988777654
No 212
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=3.3e-17 Score=143.08 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=101.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc----ceeeeEEEEEEE--CCEE-----E-----EEEEEeCCCchhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKAT----IGVEFQTRTLVI--QHKS-----V-----KAQIWDTAGQERY 79 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~-----~-----~~~l~Dt~G~~~~ 79 (225)
+.+.|+++|++++|||||+++|.+.......... .+..+....... .+.. . .+.||||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 4557999999999999999999765443222211 111111111000 0111 1 2789999999999
Q ss_pred hhhhHhhhcCCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--C----------HHH
Q 027292 80 RAVTSAYYRGAVGAMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--P----------TED 144 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~----------~~~ 144 (225)
..++...+..+|++|+|+|+++ +.+++.+. .+.. .+.|+++++||+|+...+.. . ...
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9999888999999999999997 44444332 2222 37899999999998532110 0 000
Q ss_pred -----------HHHHHHH---------------cCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 145 -----------AKEFAQK---------------EGLFFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 145 -----------~~~~~~~---------------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
+...... ..++++++||.+|.|++++++.+...+.+
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~ 219 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR 219 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence 0001111 12569999999999999999888755433
No 213
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=137.70 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=112.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhh--------Hh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVT--------SA 85 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~ 85 (225)
...-++|+++|.|+||||||+|.|++.+.....+-. |++....+..++-.++.+.+.||+|........ ..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~-GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIA-GTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCC-CCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 345689999999999999999999998776555433 355555555555677889999999965543332 23
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT 165 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (225)
.+..||.+++|+|.+.+.+-... .+......+.|+++|.||.|+....... .. ....+.+++.+|+++++
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~-----~~~~~~~~~~~~i~v~NK~DL~~~~~~~--~~---~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDL-----ALIELLPKKKPIIVVLNKADLVSKIELE--SE---KLANGDAIISISAKTGE 362 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhH-----HHHHhcccCCCEEEEEechhcccccccc--hh---hccCCCceEEEEecCcc
Confidence 57799999999999985222221 1111334579999999999998643311 11 11233468999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTEIFNI 181 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~ 181 (225)
|++.+.+.|.+.+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999998888777665
No 214
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=2.1e-17 Score=136.21 Aligned_cols=163 Identities=23% Similarity=0.205 Sum_probs=114.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----------hhhh-hH
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----------YRAV-TS 84 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-~~ 84 (225)
..++|+|+|.|++|||||+|+|++.+-...+... |++.......+...+..+.++||+|..+ |... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 5799999999999999999999997655444332 4666666666666777889999999432 2221 23
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-HH---c-CCeEEEe
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFA-QK---E-GLFFLET 159 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~---~-~~~~~~~ 159 (225)
..+..+|++++|+|+..+-+-+. ......+.+ .+.++++++||+|+.+.+....++.++.. .. . .++++.+
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQD-LRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHH-HHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 35778999999999997655433 222233333 37889999999999775434444433222 22 2 3569999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 160 SALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 160 Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
||+++.++..+|+.+.........
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred EecCCCChHHHHHHHHHHHHHhcc
Confidence 999999999999987766554433
No 215
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=1.9e-17 Score=128.13 Aligned_cols=113 Identities=22% Similarity=0.309 Sum_probs=80.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------------CCcceeeeEEEEEEE-----CCEEEEEEEEeCCCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDS-----------------KATIGVEFQTRTLVI-----QHKSVKAQIWDTAGQ 76 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~ 76 (225)
+|+|+|+.++|||||+++|+........ ....+.+.....+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432210 011122222222221 345688999999999
Q ss_pred hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
..|......++..+|++|+|+|+.+..+.. ...|+..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECcccC
Confidence 999888888999999999999998765443 2344444332 258999999999985
No 216
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.75 E-value=1e-17 Score=130.12 Aligned_cols=148 Identities=20% Similarity=0.167 Sum_probs=95.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCC-----------------------------CCCCCcceeeeEEEEEEECCEEEEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFS-----------------------------LDSKATIGVEFQTRTLVIQHKSVKAQ 69 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (225)
+|+++|+.++|||||+.+|+...-. .......+++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999642100 00111223444444444555678899
Q ss_pred EEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhh------HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--CCCC
Q 027292 70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQS------FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ--RAVP 141 (225)
Q Consensus 70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 141 (225)
+|||||+..|...+...+..+|++|+|+|+.+... .......+..... .. ..|+++++||+|+... ....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG-VKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC-CCeEEEEEEccccccccccHHH
Confidence 99999998888777777889999999999987421 1112222222222 11 3689999999999732 1111
Q ss_pred ----HHHHHHHHHHcC-----CeEEEeccCCCCCHH
Q 027292 142 ----TEDAKEFAQKEG-----LFFLETSALEATNVE 168 (225)
Q Consensus 142 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~ 168 (225)
.+++..+....+ ++++++||++|.|+.
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 112223334443 569999999999987
No 217
>PRK12735 elongation factor Tu; Reviewed
Probab=99.74 E-value=7.6e-17 Score=135.51 Aligned_cols=149 Identities=18% Similarity=0.169 Sum_probs=99.2
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC-------cC-------CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN-------EF-------SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (225)
..+.++|+++|++++|||||+++|++. .+ ........+++.......+......+.|+||||++.|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 456799999999999999999999862 10 0011112344444445555556678899999999988
Q ss_pred hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHHHcC--
Q 027292 80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVII-LIGNKSDLEEQRAV---PTEDAKEFAQKEG-- 153 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 153 (225)
.......+..+|++++|+|+.+....+ ..+++..+.. .+.|.+ +++||+|+.+.... ..+++..+...++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 877777888999999999998643222 2222333332 267755 57999999742211 1124555555543
Q ss_pred ---CeEEEeccCCCCC
Q 027292 154 ---LFFLETSALEATN 166 (225)
Q Consensus 154 ---~~~~~~Sa~~~~~ 166 (225)
++++++|+.++.+
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 165 GDDTPIIRGSALKALE 180 (396)
T ss_pred cCceeEEecchhcccc
Confidence 5699999999853
No 218
>PRK12736 elongation factor Tu; Reviewed
Probab=99.74 E-value=5.2e-17 Score=136.42 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=99.5
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCC--------------CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFS--------------LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (225)
....++|+++|+.++|||||+++|++.... .......+++.......+......+.+|||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 456799999999999999999999863110 001112344444555556556678899999999998
Q ss_pred hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHHcC--
Q 027292 80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVP---TEDAKEFAQKEG-- 153 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 153 (225)
.......+..+|++++|+|+.+...... ..++..+... +.| +|+++||+|+.+..... .+++..+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 8777777889999999999986322221 2223333332 677 67889999987422211 124445555554
Q ss_pred ---CeEEEeccCCCC
Q 027292 154 ---LFFLETSALEAT 165 (225)
Q Consensus 154 ---~~~~~~Sa~~~~ 165 (225)
++++++||.+|.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 165 GDDIPVIRGSALKAL 179 (394)
T ss_pred cCCccEEEeeccccc
Confidence 579999999983
No 219
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.6e-18 Score=119.78 Aligned_cols=158 Identities=22% Similarity=0.352 Sum_probs=117.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
...+|+++|-.|+|||+++.++.-++. ....|+.+..... +..++.++++||..|+-..+..|.-|+.+.|++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 678999999999999999988876654 2334454444333 33478899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEeccCCCCCHHH
Q 027292 96 VYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF-----AQKEGLFFLETSALEATNVEN 169 (225)
Q Consensus 96 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~ 169 (225)
|+|.+|........ .++..+.+-...+..+++++||.|.... ....++... .+..-+.+|++||.+|+|++.
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 99999977655543 3444444444456789999999998752 222222211 122235699999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 170 AFMTVLTEIFN 180 (225)
Q Consensus 170 ~f~~l~~~~~~ 180 (225)
+++|+.+-+.+
T Consensus 170 ~~DWL~~~l~~ 180 (182)
T KOG0072|consen 170 AMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 220
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2.1e-16 Score=117.56 Aligned_cols=159 Identities=17% Similarity=0.222 Sum_probs=108.3
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----------chhhhh
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG----------QERYRA 81 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~ 81 (225)
-+.+..+.|+++|.++||||||||+|++.........+.|.+.....+.+++. +.+.|.|| .+.+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 35567889999999999999999999997643344444455555555555443 78999999 455666
Q ss_pred hhHhhhc---CCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc----
Q 027292 82 VTSAYYR---GAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE---- 152 (225)
Q Consensus 82 ~~~~~~~---~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---- 152 (225)
+...|+. +..++++++|+.+..... .+.+|+... +.|+++++||+|.....+.. ..........
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~------~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~ 168 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL------GIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPP 168 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCC
Confidence 6666665 347889999998754432 234444433 89999999999987632221 1122233222
Q ss_pred CCe--EEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 153 GLF--FLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 153 ~~~--~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
... ++..|+..+.|++++...|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 222 7788999999999988887766543
No 221
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=2e-16 Score=122.93 Aligned_cols=153 Identities=19% Similarity=0.205 Sum_probs=95.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc-----------------------ceeeeEEEE-------------EEEC
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKAT-----------------------IGVEFQTRT-------------LVIQ 62 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~ 62 (225)
||+++|+.++|||||+.+|..+.+....... .+.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999875553321100 000000000 0011
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292 63 HKSVKAQIWDTAGQERYRAVTSAYYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV 140 (225)
Q Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 140 (225)
.....+.++||||++.|.......+. .+|++++|+|+.....- ....++..+... +.|+++|+||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 23457899999999998765555554 78999999998864332 223333333333 7899999999998642211
Q ss_pred C--HHHHHHHHH--------------------------HcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 141 P--TEDAKEFAQ--------------------------KEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 141 ~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
. .+++.++.. ...+++|.+|+.+|+|+++++..|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 111222221 0124799999999999999988764
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=9.6e-17 Score=134.90 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=100.0
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcC------------CC--CCCCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEF------------SL--DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (225)
+...+.++|+++|+.++|||||+++|++... .. ......+++.....+.++.....+.||||||++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 3456789999999999999999999974200 00 011112344444555565667789999999999
Q ss_pred hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCCC---HHHHHHHHHHcC
Q 027292 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVII-LIGNKSDLEEQRAVP---TEDAKEFAQKEG 153 (225)
Q Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 153 (225)
.|..........+|++++|+|+.+...... .+.+..+... +.|.+ +++||+|+.+..... .++++.+....+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 998777777789999999999987322221 1222333322 56654 689999987532211 234556666654
Q ss_pred -----CeEEEeccCCCC
Q 027292 154 -----LFFLETSALEAT 165 (225)
Q Consensus 154 -----~~~~~~Sa~~~~ 165 (225)
++++++|+.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 679999999875
No 223
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.4e-16 Score=137.05 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=114.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh------hhhhHhhh--c
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY------RAVTSAYY--R 88 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~--~ 88 (225)
..+|+++|.||+|||||+|+|++........|..+.+........ .+..++++|.||.-.. .....+++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~--~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY--KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe--cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 356999999999999999999998888888888666665555554 4445889999994322 12233333 3
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE 168 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 168 (225)
..|++|-|+|+++.+-.-.+. .+..+.+.|+++++|++|...... ..-+.+++.+.+|+++++++|++|+|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLylt------lQLlE~g~p~ilaLNm~D~A~~~G-i~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLT------LQLLELGIPMILALNMIDEAKKRG-IRIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHHHHHH------HHHHHcCCCeEEEeccHhhHHhcC-CcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 679999999999765433322 222233899999999999987444 3355788999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027292 169 NAFMTVLTEI 178 (225)
Q Consensus 169 ~~f~~l~~~~ 178 (225)
++...+.+..
T Consensus 154 ~l~~~i~~~~ 163 (653)
T COG0370 154 ELKRAIIELA 163 (653)
T ss_pred HHHHHHHHhc
Confidence 9888877543
No 224
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.73 E-value=4.5e-17 Score=113.28 Aligned_cols=156 Identities=23% Similarity=0.357 Sum_probs=115.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
+..+||+++|-.++|||||+..|..... ..-.|+.+ +....+.+ ...+.+.+||..|+...+..|..|+.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEee-cCcEEEEEEecCCccccchhhhhhhhccceEE
Confidence 7789999999999999999999977543 33344434 33333333 35688999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHH-HHHH----HHHcCCeEEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTED-AKEF----AQKEGLFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~----~~~~~~~~~~~Sa~~~~~v~ 168 (225)
+|+|.++..-++.+..-+.++.+- ....+|+.+..||.|+... ...++ +.++ .+..-.-+-++|+..++++.
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 999999988888876655555443 3467999999999998642 12222 2211 11122347889999999999
Q ss_pred HHHHHHHH
Q 027292 169 NAFMTVLT 176 (225)
Q Consensus 169 ~~f~~l~~ 176 (225)
.-.+|+..
T Consensus 169 dg~~wv~s 176 (185)
T KOG0074|consen 169 DGSDWVQS 176 (185)
T ss_pred Ccchhhhc
Confidence 88887754
No 225
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3.8e-16 Score=130.89 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=115.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
..+=|.++|+...|||||+..+-.........-..+-......+..+. ....+.|+|||||+.|..++.....-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 345689999999999999999988776555554444444444444432 3467899999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cC--CeEEEeccCCCC
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-------EG--LFFLETSALEAT 165 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~~Sa~~~~ 165 (225)
+|+++++.--.+. ...+......++|+++++||+|..+. .++....-..+ |+ ..++++||++|+
T Consensus 84 LVVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999998322111 33344444459999999999999853 22333222222 32 459999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTEIFNI 181 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~ 181 (225)
|++++++.+.-....+
T Consensus 157 Gi~eLL~~ill~aev~ 172 (509)
T COG0532 157 GIDELLELILLLAEVL 172 (509)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999877666555
No 226
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=3e-16 Score=125.02 Aligned_cols=115 Identities=18% Similarity=0.238 Sum_probs=81.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCC--------------------CCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDS--------------------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (225)
-+|+|+|++|+|||||+++|+...-.... ....+.+.......+.+.++.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999752111000 0011334444455566778899999999999
Q ss_pred hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
+|.......++.+|++|+|+|+.+.... ....|+..... .+.|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 9888777788999999999999864322 22334433322 3789999999999865
No 227
>COG2262 HflX GTPases [General function prediction only]
Probab=99.72 E-value=4.4e-16 Score=126.75 Aligned_cols=163 Identities=18% Similarity=0.170 Sum_probs=118.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhH
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ---------ERYRAVTS 84 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~ 84 (225)
....+.|.++|.+++|||||+|.|.+........-..+.+.....+...+ +..+.+-||.|. +.|.++.+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence 45689999999999999999999997665444433334444555555543 667889999992 33555444
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA 164 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (225)
-...+|+++.|+|++++...+.+..-...+.+....+.|+|+|.||+|+..+.. .......... ..+.+||+++
T Consensus 268 -E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~ 341 (411)
T COG2262 268 -EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTG 341 (411)
T ss_pred -HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccC
Confidence 356899999999999997777777766777777656799999999999765322 1111111122 4899999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 027292 165 TNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 165 ~~v~~~f~~l~~~~~~~~~ 183 (225)
.|++.+++.|...+.....
T Consensus 342 ~gl~~L~~~i~~~l~~~~~ 360 (411)
T COG2262 342 EGLDLLRERIIELLSGLRT 360 (411)
T ss_pred cCHHHHHHHHHHHhhhccc
Confidence 9999999999888875544
No 228
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=3.9e-16 Score=123.57 Aligned_cols=161 Identities=18% Similarity=0.207 Sum_probs=115.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--h-------hhhhHhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--Y-------RAVTSAY 86 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~-------~~~~~~~ 86 (225)
..+.|+|.|.|+||||||++.+.+.+......|.++.......+. ....+++++||||.-+ . .......
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe--~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE--RGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeee--cCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 678999999999999999999999888777777655555554443 3556789999999211 1 1112223
Q ss_pred hcCCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-HHHHcCCeEEEeccCC
Q 027292 87 YRGAVGAMLVYDISR--RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE-FAQKEGLFFLETSALE 163 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~ 163 (225)
-+-.++++|+||.+. ..+.+.-..++..++.... .|+++|+||+|+.+.+.. +++.. +....+.....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeeee
Confidence 345788999999986 4567777777888887765 899999999999863332 22333 3333344477888888
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~~~~~ 182 (225)
+.+.+.+-..+...+.+..
T Consensus 321 ~~~~d~~~~~v~~~a~~~~ 339 (346)
T COG1084 321 GCGLDKLREEVRKTALEPL 339 (346)
T ss_pred hhhHHHHHHHHHHHhhchh
Confidence 8889888888777765543
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=3.7e-16 Score=131.89 Aligned_cols=151 Identities=16% Similarity=0.143 Sum_probs=101.3
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCC--------------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSL--------------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (225)
.....++|+++|++++|||||+++|++..... ......+++.......+......+.|+||||+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 35567999999999999999999998641110 0111234444444455555667888999999998
Q ss_pred hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-
Q 027292 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV---PTEDAKEFAQKEG- 153 (225)
Q Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 153 (225)
|.......+..+|++++|+|+.....-. ....+..+... +.| +|+++||+|+.+.... ..+++..+.+..+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 8877777888999999999998643222 22223333322 677 7788999999752221 1123445555443
Q ss_pred ----CeEEEeccCCCCCH
Q 027292 154 ----LFFLETSALEATNV 167 (225)
Q Consensus 154 ----~~~~~~Sa~~~~~v 167 (225)
++++++|+.+|.++
T Consensus 164 ~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 164 PGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCcceEEEcchhhcccc
Confidence 57999999998743
No 230
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.70 E-value=9.3e-16 Score=120.10 Aligned_cols=161 Identities=20% Similarity=0.209 Sum_probs=107.5
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh------------hhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER------------YRA 81 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------------~~~ 81 (225)
..+.++|+|+|.|++|||||.|.+++......+....++..... -.+.....++.|+||||.-. +..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~il-gi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRIL-GIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeee-EEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 45689999999999999999999999888777665544444433 33445667899999999321 111
Q ss_pred hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-------------CCC--HHHHH
Q 027292 82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR-------------AVP--TEDAK 146 (225)
Q Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~--~~~~~ 146 (225)
.....+..||.+++|+|+.+....- -.+.+..+..+. +.|-++|+||.|..... ... ..+++
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 2344567899999999999622211 123344455553 68889999999975321 111 11111
Q ss_pred -HHHHH---------cCC----eEEEeccCCCCCHHHHHHHHHHHH
Q 027292 147 -EFAQK---------EGL----FFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 147 -~~~~~---------~~~----~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
++... .+. .+|.+||.+|+|++++-++|+..+
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 11111 112 289999999999999999988654
No 231
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=5e-16 Score=122.17 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=114.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----hhh---hhHhhhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----YRA---VTSAYYRG 89 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~---~~~~~~~~ 89 (225)
...|.+||.|++|||||+++|.........++.++......++.+++.. .+.+-|+||.-+ -+. .....+..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence 5678999999999999999999877655555554555555555554333 388999999432 111 23334668
Q ss_pred CCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCC
Q 027292 90 AVGAMLVYDISRR---QSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALE 163 (225)
Q Consensus 90 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 163 (225)
++.++||+|++.. ..++++..+..++..+.. .+.|.++|+||+|+.+. ....+.++++.+.-+ ++++||+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeecc
Confidence 8999999999998 888888777777655543 57899999999998632 122246677776655 99999999
Q ss_pred CCCHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLT 176 (225)
Q Consensus 164 ~~~v~~~f~~l~~ 176 (225)
++++.++++.+.+
T Consensus 352 ~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 352 GEGLEELLNGLRE 364 (366)
T ss_pred ccchHHHHHHHhh
Confidence 9999999887654
No 232
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.69 E-value=1.3e-15 Score=116.49 Aligned_cols=158 Identities=13% Similarity=0.172 Sum_probs=95.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCccee---eeEEEEEEECCEEEEEEEEeCCCchhhhhh-----hHhhhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGV---EFQTRTLVIQHKSVKAQIWDTAGQERYRAV-----TSAYYRG 89 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~~ 89 (225)
++|+|+|.+|+|||||+|.|++.........+.+. +.....+.. .....+.+|||||....... ....+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 78999999999999999999986554333222221 111111111 12346899999996432211 2223567
Q ss_pred CCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-------CH----HHHHHHHH----HcC
Q 027292 90 AVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQRAV-------PT----EDAKEFAQ----KEG 153 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~----~~~~~~~~----~~~ 153 (225)
+|+++++.+. + +... ..|+..+... +.|+++|+||+|+...... .. ++.++.+. ..+
T Consensus 81 ~d~~l~v~~~-~---~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST-R---FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC-C---CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8988888542 2 2222 3455555544 6789999999999431110 01 11222221 212
Q ss_pred ---CeEEEeccC--CCCCHHHHHHHHHHHHHHHHh
Q 027292 154 ---LFFLETSAL--EATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 154 ---~~~~~~Sa~--~~~~v~~~f~~l~~~~~~~~~ 183 (225)
.++|.+|+. .+.++..+.+.++..+-++..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 248999998 578999999999988876654
No 233
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.69 E-value=1e-15 Score=130.12 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=104.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCC-----------------------------CCCCCcceeeeEEEEEEECCE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFS-----------------------------LDSKATIGVEFQTRTLVIQHK 64 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 64 (225)
..+.++|+++|+.++|||||+.+|+...-. .......+++.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 456799999999999999999988741100 001122344444555556677
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHH-------hHHHHHHHHHhhcCCCC-cEEEEEeCCCCCC
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFD-------HIPRWLEELRSHADKNI-VIILIGNKSDLEE 136 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~ 136 (225)
...+.++|+||+++|.......+..+|++|+|+|+.+. .++ +..+.+..+.. .++ ++|+++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCc
Confidence 88999999999999999889999999999999999862 121 22222222222 256 4788999999862
Q ss_pred CCC--C----CHHHHHHHHHHcC-----CeEEEeccCCCCCHHH
Q 027292 137 QRA--V----PTEDAKEFAQKEG-----LFFLETSALEATNVEN 169 (225)
Q Consensus 137 ~~~--~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 169 (225)
... . ..++++.++++.+ ++|+++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 111 0 1344666666665 5699999999999853
No 234
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=6.1e-16 Score=119.78 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=78.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCcceeeeEEEEEEEC--------CEEEEEEEEeCC
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLD----------------SKATIGVEFQTRTLVIQ--------HKSVKAQIWDTA 74 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~ 74 (225)
+|+++|+.++|||||+.+|+...-... .....++........+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999976321100 01111122222222232 347889999999
Q ss_pred CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
|++.|......++..+|++|+|+|+.+....+....| .... ..+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCCcc
Confidence 9999999999999999999999999976544432222 2222 2368999999999985
No 235
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=5e-16 Score=132.97 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=99.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-------------------------------CCcceeeeEEEEEEEC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-------------------------------KATIGVEFQTRTLVIQ 62 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 62 (225)
....++|+++|+.++|||||+.+|+...-.... ....+++.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 456799999999999999999999763211110 0111223333344455
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH
Q 027292 63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT 142 (225)
Q Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 142 (225)
.....+.||||||++.|.......+..+|++++|+|+.....-.....|. .+... . ..|+++++||+|+.+......
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l-g-~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL-G-IKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh-C-CCceEEEEEeeccccchhHHH
Confidence 56678999999999998766666689999999999998643221111221 12111 1 247889999999974222112
Q ss_pred HH----HHHHHHHc----CCeEEEeccCCCCCHHHH
Q 027292 143 ED----AKEFAQKE----GLFFLETSALEATNVENA 170 (225)
Q Consensus 143 ~~----~~~~~~~~----~~~~~~~Sa~~~~~v~~~ 170 (225)
++ +..+.... .++++++||++|.|+.++
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 22 22233333 366999999999999864
No 236
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=4e-16 Score=124.85 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=94.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCC------C----------cceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSK------A----------TIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV 82 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 82 (225)
+|+++|++|+|||||+++|+......... . ..+.........+.+....+.+|||||+..|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532111100 0 0011222222233345678899999999988888
Q ss_pred hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeE--EEec
Q 027292 83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFF--LETS 160 (225)
Q Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~S 160 (225)
+..++..+|++++|+|+.+.........| ..+.. .+.|.++++||+|+... ...+....+...++..+ +.+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~--~~~~~~~~l~~~~~~~~~~~~ip 154 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA--DFDKTLAALQEAFGRPVVPLQLP 154 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC--CHHHHHHHHHHHhCCCeEEEEec
Confidence 88899999999999999976544333333 22322 37899999999998753 12233444444555543 3444
Q ss_pred cCCCCCHHHHHHHH
Q 027292 161 ALEATNVENAFMTV 174 (225)
Q Consensus 161 a~~~~~v~~~f~~l 174 (225)
..++.++..+.+.+
T Consensus 155 ~~~~~~~~~~vd~~ 168 (268)
T cd04170 155 IGEGDDFKGVVDLL 168 (268)
T ss_pred ccCCCceeEEEEcc
Confidence 56655555444443
No 237
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.68 E-value=5.2e-16 Score=123.75 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=80.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCC----------------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSL----------------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV 82 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 82 (225)
+|+++|++++|||||+++|+...-.. ......+++.......+.+.+..+.+|||||+..|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 68999999999999999997421100 00112234444444445556788999999999988888
Q ss_pred hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
+...++.+|++|+|+|+.+...... ..++..+.. .+.|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8899999999999999987432222 223333332 3789999999999874
No 238
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=4.5e-16 Score=130.08 Aligned_cols=162 Identities=19% Similarity=0.243 Sum_probs=118.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCc---------------CCCCCCCcceeeeEEEEEE-ECCEEEEEEEEeCCCc
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNE---------------FSLDSKATIGVEFQTRTLV-IQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~ 76 (225)
+.++.-|+.|+.+...|||||..+|+... ...+.....++......+. .++..+.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 45677899999999999999999997521 1122233333333333322 2356699999999999
Q ss_pred hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCe
Q 027292 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQKEGLF 155 (225)
Q Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 155 (225)
.+|.......+..+|++|+|+|++.....+.+..++..+.. +.-+|.|+||+|++..+.. ...++..+......+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE 211 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999987666666665555533 6779999999999763321 122233344344456
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q 027292 156 FLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 156 ~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
.+.+||++|.++.++|+.+++.+
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhC
Confidence 99999999999999999998875
No 239
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=8.3e-16 Score=129.58 Aligned_cols=149 Identities=21% Similarity=0.199 Sum_probs=96.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCC-------------------------------CCcceeeeEEEEEEECCEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDS-------------------------------KATIGVEFQTRTLVIQHKSV 66 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 66 (225)
+||+++|+.++|||||+.+|+...-.... ....+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999752211100 01112233333444455667
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH----
Q 027292 67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT---- 142 (225)
Q Consensus 67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---- 142 (225)
.+.||||||++.|.......+..+|++|+|+|+......+....|. .+... . ..++++++||+|+.+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-~-~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL-G-IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc-C-CCcEEEEEEecccccchHHHHHHHH
Confidence 8999999999999777777889999999999998643222222222 22222 1 346888999999975222111
Q ss_pred HHHHHHHHHcC---CeEEEeccCCCCCHHH
Q 027292 143 EDAKEFAQKEG---LFFLETSALEATNVEN 169 (225)
Q Consensus 143 ~~~~~~~~~~~---~~~~~~Sa~~~~~v~~ 169 (225)
++...+.+..+ ++++++||.+|.|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22233334444 4699999999999885
No 240
>PRK00049 elongation factor Tu; Reviewed
Probab=99.68 E-value=2.8e-15 Score=125.98 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=98.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCC--------------CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFS--------------LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (225)
....++|+++|+.++|||||+++|++.... .......+++.......+......+.++||||+..|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 456799999999999999999999873110 001112344444455555556678899999999988
Q ss_pred hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHHHc---
Q 027292 80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVII-LIGNKSDLEEQRAV---PTEDAKEFAQKE--- 152 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~---~~~~~~~~~~~~--- 152 (225)
.......+..+|++++|+|+....... ...++..+... +.|.+ +++||+|+.+.... ...++..+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777889999999999998643222 22333333332 67865 58999999642211 112344444443
Q ss_pred --CCeEEEeccCCCCC
Q 027292 153 --GLFFLETSALEATN 166 (225)
Q Consensus 153 --~~~~~~~Sa~~~~~ 166 (225)
+++++++|+.++.+
T Consensus 165 ~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 165 GDDTPIIRGSALKALE 180 (396)
T ss_pred ccCCcEEEeecccccC
Confidence 35799999998753
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=99.67 E-value=1.2e-15 Score=130.35 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=101.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCc------CCC--------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNE------FSL--------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (225)
.....++|+++|+.++|||||+++|++.. ... ......+++.......+......+.+||+||++.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 45678999999999999999999998521 110 1122234444444444555667889999999999
Q ss_pred hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHc--
Q 027292 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV---PTEDAKEFAQKE-- 152 (225)
Q Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~-- 152 (225)
|.......+..+|++++|+|+.+..... ..+++..+... ++| +|+++||+|+.+.... ..+++..+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 9888888888999999999998643222 23333333333 677 7889999999652211 112344454443
Q ss_pred ---CCeEEEeccCCCCC
Q 027292 153 ---GLFFLETSALEATN 166 (225)
Q Consensus 153 ---~~~~~~~Sa~~~~~ 166 (225)
+++++++|+.++.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 46799999988753
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.66 E-value=2.6e-15 Score=127.69 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=101.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcC--C---------------------------CCCCCcceeeeEEEEEEECCE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEF--S---------------------------LDSKATIGVEFQTRTLVIQHK 64 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~ 64 (225)
..+.++|+++|+.++|||||+.+|+...- . .......+.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 45678999999999999999999976110 0 001112234444455556677
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh---hH---HhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC-
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ---SF---DHIPRWLEELRSHADKNIV-IILIGNKSDLEE- 136 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~- 136 (225)
...+.|+||||+.+|.......+..+|++|+|+|+.... .+ .+..+.+..+... ++| +|+++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccc
Confidence 889999999999999888888899999999999998642 01 1222222223222 665 678999999532
Q ss_pred -CCCCC----HHHHHHHHHHcC-----CeEEEeccCCCCCHHH
Q 027292 137 -QRAVP----TEDAKEFAQKEG-----LFFLETSALEATNVEN 169 (225)
Q Consensus 137 -~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 169 (225)
..+.. .+++..+....+ ++++++|+.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 223334444333 5699999999999864
No 243
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.66 E-value=2.2e-15 Score=120.65 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=91.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC----------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLD----------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY------ 79 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------ 79 (225)
..++|+|+|.+|+|||||+|+|++..+... ..++.........+..++..+.+.+|||||...+
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999776543 2333344444455556677789999999993221
Q ss_pred ------------hh--------hhHhhhc--CCCEEEEEEeCCChhhHHhHHHH-HHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 80 ------------RA--------VTSAYYR--GAVGAMLVYDISRRQSFDHIPRW-LEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 80 ------------~~--------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
.. .+...+. .+|+++++++..... + ..| +..+..... ++|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l---~~~D~~~lk~l~~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-L---KPLDIEFMKRLSK-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-C---CHHHHHHHHHHhc-cCCEEEEEECCCcCC
Confidence 00 0101222 468888888876421 1 111 222333333 689999999999854
Q ss_pred CC--CCCHHHHHHHHHHcCCeEEEeccCC
Q 027292 137 QR--AVPTEDAKEFAQKEGLFFLETSALE 163 (225)
Q Consensus 137 ~~--~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (225)
.. ......+++.+..+++.+|......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 22 2234456677788889888776543
No 244
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.4e-15 Score=123.28 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=114.6
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
...+..+=|-|+|+...|||||+.+|-+...........+.......+..+ .+-.++|.|||||..|.+|+......+|
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCcccc
Confidence 334456778899999999999999998876654444433333333334444 4478999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHH------HHcC--CeEEEeccC
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK-EFA------QKEG--LFFLETSAL 162 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~------~~~~--~~~~~~Sa~ 162 (225)
++++|+.++|.---+ ..+.+......+.|+|+.+||+|.++. .++.+. ++. .++| +.++++||+
T Consensus 227 IvVLVVAadDGVmpQ----T~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 227 IVVLVVAADDGVMPQ----TLEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred EEEEEEEccCCccHh----HHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 999999999842212 134445555569999999999997642 334333 332 2333 458999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLTEI 178 (225)
Q Consensus 163 ~~~~v~~~f~~l~~~~ 178 (225)
+|+|++.+-+.++-.+
T Consensus 300 ~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 300 TGENLDLLEEAILLLA 315 (683)
T ss_pred cCCChHHHHHHHHHHH
Confidence 9999999877665443
No 245
>PLN03127 Elongation factor Tu; Provisional
Probab=99.65 E-value=5.2e-15 Score=125.66 Aligned_cols=145 Identities=15% Similarity=0.143 Sum_probs=92.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC------cCCC--------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN------EFSL--------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (225)
....++|+++|+.++|||||+++|.+. .... ......+++.......+......+.|+||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456799999999999999999999631 1000 01112334445555566666778999999999988
Q ss_pred hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHHc---
Q 027292 80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVP---TEDAKEFAQKE--- 152 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~--- 152 (225)
.......+..+|++++|+|+.+....+ ..+.+..+.. .+.| +|+++||+|+.+..... ..++.++....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 776666777899999999998643221 1222222322 2678 57889999997522211 11233333332
Q ss_pred --CCeEEEeccC
Q 027292 153 --GLFFLETSAL 162 (225)
Q Consensus 153 --~~~~~~~Sa~ 162 (225)
.++++++|+.
T Consensus 214 ~~~vpiip~Sa~ 225 (447)
T PLN03127 214 GDEIPIIRGSAL 225 (447)
T ss_pred CCcceEEEeccc
Confidence 3568888875
No 246
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=4.1e-15 Score=131.98 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=97.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-------------C------------------CcceeeeEEEEEEEC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-------------K------------------ATIGVEFQTRTLVIQ 62 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-------------~------------------~~~~~~~~~~~~~~~ 62 (225)
....++|+++|++++|||||+++|+...-.... . ...+++.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345689999999999999999999864321110 0 001222223333344
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH
Q 027292 63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT 142 (225)
Q Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 142 (225)
.....+.|+||||++.|.......+..+|++++|+|+......+.... +..+... . ..+++|++||+|+.+......
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~-~-~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLL-G-IRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHh-C-CCeEEEEEEecccccchhHHH
Confidence 556678899999999887666667889999999999976432221111 1222222 1 357889999999964221111
Q ss_pred ----HHHHHHHHHcC---CeEEEeccCCCCCHHH
Q 027292 143 ----EDAKEFAQKEG---LFFLETSALEATNVEN 169 (225)
Q Consensus 143 ----~~~~~~~~~~~---~~~~~~Sa~~~~~v~~ 169 (225)
.++.++....+ ++++++||++|.|+.+
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22333344445 3599999999999874
No 247
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=7.7e-15 Score=131.49 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=84.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCC-------------CCCC---CcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFS-------------LDSK---ATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (225)
+.+...+|+|+|+.++|||||+++|+...-. ..+. ...+.+.......+.+....+.+|||||+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 3456789999999999999999999853210 0000 01122222222333445778999999999
Q ss_pred hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
.+|...+..+++.+|++|+|+|+.+.........| ..+.. .+.|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 99998899999999999999999986655544444 33332 3789999999999863
No 248
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.64 E-value=3.7e-15 Score=115.50 Aligned_cols=162 Identities=17% Similarity=0.283 Sum_probs=99.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCC-cceeeeEEEEEEECCEEEEEEEEeCCCchhhhh-----hhHhhhcCCCE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA-----VTSAYYRGAVG 92 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~ 92 (225)
||+++|+.++||||+.+.++.+-.+.+... ..+.+.....+. ....+.+.+||+||+..+.. .....++.+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999998887644322211 112222322222 24556899999999875433 35678899999
Q ss_pred EEEEEeCCChh---hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC--CC----CHHHHHHHHHHcC---CeEEEec
Q 027292 93 AMLVYDISRRQ---SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR--AV----PTEDAKEFAQKEG---LFFLETS 160 (225)
Q Consensus 93 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~----~~~~~~~~~~~~~---~~~~~~S 160 (225)
+|||+|+...+ .+..+...+..+.+..+ +..+-+.++|+|+..+. .. ..+.+.+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999999543 33344445555555544 88899999999985411 10 1112333344445 6799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Q 027292 161 ALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 161 a~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
..+. .+-++|..+++.+.-+..
T Consensus 159 I~D~-Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 159 IWDE-SLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp TTST-HHHHHHHHHHHTTSTTHC
T ss_pred CcCc-HHHHHHHHHHHHHcccHH
Confidence 9984 688888888887764433
No 249
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.63 E-value=6.5e-15 Score=125.01 Aligned_cols=164 Identities=16% Similarity=0.150 Sum_probs=103.7
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcC---CCCCCCcceeeeEEEEE---------------EEC------------
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEF---SLDSKATIGVEFQTRTL---------------VIQ------------ 62 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~------------ 62 (225)
.....++|.++|+...|||||+.+|.+... ..+.....+++...... .+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 346679999999999999999999986322 11221221111111100 000
Q ss_pred ----CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292 63 ----HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 63 ----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (225)
.....+.|+|+||++.|.......+..+|++++|+|+.+.-...+..+.+..+ .... -.++|+++||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lg-i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMK-LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcC-CCcEEEEEecccccCHH
Confidence 01246889999999999888788888999999999998631111122222222 2222 24688999999997522
Q ss_pred CC--CHHHHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 139 AV--PTEDAKEFAQK---EGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 139 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
.. ..++++++... .+++++++||++|.|++.+++.|.+.+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 11 11223333322 356799999999999999998887643
No 250
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=1.9e-14 Score=100.59 Aligned_cols=106 Identities=21% Similarity=0.208 Sum_probs=67.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh---------hhhhhHhhhc
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER---------YRAVTSAYYR 88 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~ 88 (225)
+|+|+|.+|+|||||+|+|++.... ....+..+.......+.+++.. +.++||||... ........+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6999999999999999999985432 2222222233333334444444 46999999432 1112333458
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeC
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNK 131 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 131 (225)
.+|++++|+|..+... +....+++.+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999877322 22333344442 47999999998
No 251
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.63 E-value=2.3e-14 Score=109.45 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=94.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCC--CcceeeeEEEEEEECCEEEEEEEEeCCCchhhh--------hh---hH
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSK--ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR--------AV---TS 84 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~---~~ 84 (225)
++|+|+|.+|+|||||+|.|++........ +..+......... ..+..+.++||||..... .+ ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~--~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV--WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE--ECCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876543332 1112222222222 245678999999943321 11 11
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCCCC------CHHHHHHHHHHcCCeE
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADK--NIVIILIGNKSDLEEQRAV------PTEDAKEFAQKEGLFF 156 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~ 156 (225)
.....+|++|+|+++.+ .+.+ ....++.+.+.... -.++++++|+.|....... .....+.+.+..+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22467899999999987 2222 12233444443321 2568888899986543211 1234556666666666
Q ss_pred EEecc-----CCCCCHHHHHHHHHHHHHH
Q 027292 157 LETSA-----LEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 157 ~~~Sa-----~~~~~v~~~f~~l~~~~~~ 180 (225)
+..+. ..+.++.++++.+-+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 55554 3456677777766666554
No 252
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.62 E-value=1.2e-14 Score=118.15 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=55.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEE---------------------EC-CEEEEEEEEeCCCc-
Q 027292 20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV---------------------IQ-HKSVKAQIWDTAGQ- 76 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~l~Dt~G~- 76 (225)
|+++|.++||||||+++|++........|.++.+....... .+ ...+.+++|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998765433222222222221111 11 24478999999996
Q ss_pred ---hhhhhhhHh---hhcCCCEEEEEEeCC
Q 027292 77 ---ERYRAVTSA---YYRGAVGAMLVYDIS 100 (225)
Q Consensus 77 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 100 (225)
+++..+... .++.+|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 445544444 488999999999997
No 253
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=1.9e-14 Score=118.82 Aligned_cols=160 Identities=21% Similarity=0.252 Sum_probs=120.7
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcC---------------cCCCCCCCcceeeeEEEEEEE---CCEEEEEEEEeCC
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARN---------------EFSLDSKATIGVEFQTRTLVI---QHKSVKAQIWDTA 74 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~ 74 (225)
+..+.-|..++.+-..|||||..+|+.. .-..+..+..++......+.+ ++..+.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 3455667889999999999999999752 112233344444444444443 4588999999999
Q ss_pred CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027292 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL 154 (225)
Q Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 154 (225)
||-.|.-...+.+..+.++++|+|++..-..+.+...|..+.+ +.-+|-|+||+||+... .....++...-.|+
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad--pervk~eIe~~iGi 158 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD--PERVKQEIEDIIGI 158 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC--HHHHHHHHHHHhCC
Confidence 9999988888889999999999999987666666666666644 66799999999997532 22334455566676
Q ss_pred e---EEEeccCCCCCHHHHHHHHHHHH
Q 027292 155 F---FLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 155 ~---~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
+ .+.+||++|.|+.++++.|++.+
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhC
Confidence 5 79999999999999999998875
No 254
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.61 E-value=2.2e-14 Score=114.23 Aligned_cols=166 Identities=16% Similarity=0.096 Sum_probs=113.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRG 89 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 89 (225)
..-|.+||.|++|||||++.+.........++-++....-..+.. ...-.+.+=|+||.-+ ...-....+..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 456789999999999999999987665555555444444444444 4445688899999321 11112334567
Q ss_pred CCEEEEEEeCCChh---hHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCC
Q 027292 90 AVGAMLVYDISRRQ---SFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALE 163 (225)
Q Consensus 90 ~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 163 (225)
+-++++|+|++..+ ..+.......++..+.. .+.|.+||+||+|+....+........+.+..+.. ++.+|+.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 89999999998644 35555555666665542 57999999999997653333333344455555544 22299999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 027292 164 ATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~~~~~~ 183 (225)
+.|++++...+.+.+.+...
T Consensus 318 ~~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 318 REGLDELLRALAELLEETKA 337 (369)
T ss_pred ccCHHHHHHHHHHHHHHhhh
Confidence 99999999998888877754
No 255
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.60 E-value=1.7e-14 Score=124.67 Aligned_cols=119 Identities=15% Similarity=0.214 Sum_probs=84.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhc--CcCCCC------------------CCCcceeeeEEEEEEECCEEEEEEEEeC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFAR--NEFSLD------------------SKATIGVEFQTRTLVIQHKSVKAQIWDT 73 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 73 (225)
....-+|+|+|+.++|||||+++|+. +..... .....+++.......+...++.+.+|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 34567999999999999999999974 111000 0111233444444455566788999999
Q ss_pred CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
||+..|.......++.+|++|+|+|+.+.... ....++..... .+.|+++++||+|+..
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 99999988778889999999999999874322 22333433332 3799999999999865
No 256
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.58 E-value=4.2e-14 Score=126.63 Aligned_cols=146 Identities=15% Similarity=0.101 Sum_probs=95.0
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCC-----CCC-----------CcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSL-----DSK-----------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (225)
..+...+|.|+|++++|||||+++|+...-.. ... ...+++.......+...+..+.+|||||+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 45567799999999999999999997521110 000 01233333334444456678999999999
Q ss_pred hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-
Q 027292 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF- 155 (225)
Q Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 155 (225)
..|...+...+..+|++|+|+|+.+....... .++..+.. .+.|+++++||+|+.... .......+...++..
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~ 159 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANA 159 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCc
Confidence 98888888899999999999999875444332 22333332 368999999999997532 122233444443321
Q ss_pred ---EEEeccCCC
Q 027292 156 ---FLETSALEA 164 (225)
Q Consensus 156 ---~~~~Sa~~~ 164 (225)
.+++|+..+
T Consensus 160 ~~~~ipis~~~~ 171 (689)
T TIGR00484 160 VPIQLPIGAEDN 171 (689)
T ss_pred eeEEeccccCCC
Confidence 455555444
No 257
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1.2e-13 Score=109.25 Aligned_cols=161 Identities=22% Similarity=0.171 Sum_probs=110.7
Q ss_pred CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh-------hh
Q 027292 9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY-------RA 81 (225)
Q Consensus 9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~ 81 (225)
...-.+..-..++++|.|++|||||++.|.+........+.++.+.....+. ..+..+++.|+||.-.= ..
T Consensus 55 gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~--Y~ga~IQild~Pgii~gas~g~grG~ 132 (365)
T COG1163 55 GFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLE--YKGAQIQLLDLPGIIEGASSGRGRGR 132 (365)
T ss_pred cceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEe--ecCceEEEEcCcccccCcccCCCCcc
Confidence 4444566778999999999999999999999877666665544444444444 46678899999983221 12
Q ss_pred hhHhhhcCCCEEEEEEeCCChhh-HHhHHHHHH-----------------------------------------HHHhhc
Q 027292 82 VTSAYYRGAVGAMLVYDISRRQS-FDHIPRWLE-----------------------------------------ELRSHA 119 (225)
Q Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~~~~~~ 119 (225)
......++||++|+|+|+....+ .+.+.+.+. .+.++.
T Consensus 133 ~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~ 212 (365)
T COG1163 133 QVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYR 212 (365)
T ss_pred eeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhC
Confidence 24456789999999999986544 444432221 111111
Q ss_pred ---------------------C---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 120 ---------------------D---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 120 ---------------------~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
. .=+|.+.|.||.|+.. .++...+.+.. ..+.+||+.+.|++++.+.+.
T Consensus 213 I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~ 285 (365)
T COG1163 213 IHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIW 285 (365)
T ss_pred cccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHH
Confidence 0 0278899999999874 34455555444 689999999999999888776
Q ss_pred HHH
Q 027292 176 TEI 178 (225)
Q Consensus 176 ~~~ 178 (225)
+.+
T Consensus 286 ~~L 288 (365)
T COG1163 286 DVL 288 (365)
T ss_pred Hhh
Confidence 655
No 258
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1.5e-14 Score=112.09 Aligned_cols=163 Identities=15% Similarity=0.177 Sum_probs=107.9
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSA 85 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~ 85 (225)
.....++|+++|.+|+|||||||+|+.++..+......+.+........ ...-.+.+||+||-++ |+.....
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~-~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS-YDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh-ccccceEEecCCCcccchhhhHHHHHHHHH
Confidence 3456799999999999999999999976665544333233332222221 2235688999999443 7778888
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--------CCCCHHHH----------HH
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ--------RAVPTEDA----------KE 147 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~~~~~~~----------~~ 147 (225)
++...|.++++.++.++.---. .++++.+..... +.++++++|.+|...+ .....+.. .+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCC-HHHHHHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999987642211 233444433332 5889999999998653 11222211 11
Q ss_pred HHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292 148 FAQKEGLFFLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 148 ~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
++++ --+++..+...+-|++.+...+++.+-
T Consensus 192 ~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQE-VKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhh-cCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1111 124777888999999999998888764
No 259
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=9.5e-14 Score=124.36 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=82.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCC-----CC-----------CCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSL-----DS-----------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (225)
.+...+|.|+|+.++|||||+++|+...-.. .. ....+++.......+...+..+.+|||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 4567899999999999999999997521100 00 0112233333333344466789999999999
Q ss_pred hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
.|...+...+..+|++|+|+|+.+....... ..+..+.. .+.|+++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8888888899999999999999875433222 22233332 3689999999999864
No 260
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.58 E-value=5.1e-14 Score=121.79 Aligned_cols=119 Identities=17% Similarity=0.243 Sum_probs=84.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC--cCCC------------------CCCCcceeeeEEEEEEECCEEEEEEEEeC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN--EFSL------------------DSKATIGVEFQTRTLVIQHKSVKAQIWDT 73 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 73 (225)
.....+|+|+|++++|||||+++|+.. .... ......+++.......+++.++.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 456789999999999999999998641 1100 00112244555555556677889999999
Q ss_pred CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
||+..|.......+..+|++|+|+|+.+... .....++..... .+.|+++++||+|+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 9999888777778899999999999986421 122334443332 3789999999999864
No 261
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.2e-14 Score=118.84 Aligned_cols=169 Identities=22% Similarity=0.218 Sum_probs=112.9
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-hhh--------hh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-YRA--------VT 83 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~--------~~ 83 (225)
..+.-+.|+|+|.|++|||||+|.|.+.+.....+.. |++.......++-.++++.+.||+|..+ -.. -.
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence 3445599999999999999999999998765554333 5777777777778889999999999554 111 12
Q ss_pred HhhhcCCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcC------CCCcEEEEEeCCCCCCC-CCCCHHHHHHHHHHc--
Q 027292 84 SAYYRGAVGAMLVYDISR--RQSFDHIPRWLEELRSHAD------KNIVIILIGNKSDLEEQ-RAVPTEDAKEFAQKE-- 152 (225)
Q Consensus 84 ~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~-- 152 (225)
...+..+|++++|+|+.. -++-..+.+.+......+. ...|++++.||.|+..+ ++....-+.......
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~ 422 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRS 422 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCc
Confidence 335678999999999943 2222222333333322221 24789999999999753 222221122222211
Q ss_pred CCe-EEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292 153 GLF-FLETSALEATNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 153 ~~~-~~~~Sa~~~~~v~~~f~~l~~~~~~~~ 182 (225)
..+ +.++|+++++|++.+.+.+.+.+.+..
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 223 566999999999999988888777663
No 262
>PRK09866 hypothetical protein; Provisional
Probab=99.56 E-value=3.7e-13 Score=115.96 Aligned_cols=108 Identities=13% Similarity=0.172 Sum_probs=72.6
Q ss_pred EEEEEeCCCchh-----hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC
Q 027292 67 KAQIWDTAGQER-----YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP 141 (225)
Q Consensus 67 ~~~l~Dt~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 141 (225)
.+.|+||||... ........+..+|+++||+|..+..+... ...++.+... ..+.|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence 478899999543 23334457899999999999987433222 1223334332 2136999999999986533333
Q ss_pred HHHHHHHHH----HcC---CeEEEeccCCCCCHHHHHHHHHH
Q 027292 142 TEDAKEFAQ----KEG---LFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 142 ~~~~~~~~~----~~~---~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
.+.+..+.. ..+ ..+|++||+.|.|++.+++.|.+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 455555432 222 24999999999999999998877
No 263
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.56 E-value=3.1e-14 Score=118.13 Aligned_cols=175 Identities=17% Similarity=0.163 Sum_probs=125.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh----hhh-----hH
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY----RAV-----TS 84 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~-----~~ 84 (225)
.+++-.++|+|.|++|||||++.+..........+.++...+...+. ..-...+++||||.-.. ..+ ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~d--ykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLD--YKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhh--hheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 34567899999999999999999998887766665544444443332 34456778899994321 001 11
Q ss_pred hhhcCCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH---HHHHHHHcCCeEEEe
Q 027292 85 AYYRGAVGAMLVYDISR--RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED---AKEFAQKEGLFFLET 159 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 159 (225)
...+--.+|+|+.|++. ..|.+.-..++..++.... +.|+|+|+||+|+......+.+. .+.+....+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 12233456899999986 4566666777888877776 89999999999997755555433 334445556899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhcccccCC
Q 027292 160 SALEATNVENAFMTVLTEIFNIVNKKNLTAGE 191 (225)
Q Consensus 160 Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~~~ 191 (225)
|+.+.+||.++.......++..+-++......
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~ 353 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAARVEQKLKSES 353 (620)
T ss_pred cccchhceeeHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999888776665544
No 264
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.56 E-value=6.2e-15 Score=109.64 Aligned_cols=115 Identities=21% Similarity=0.323 Sum_probs=70.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHh---hhcCCCEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI-QHKSVKAQIWDTAGQERYRAVTSA---YYRGAVGA 93 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~~ 93 (225)
..|+++|+.|+|||+|+..|..+......... .... .... ......+.++|+|||++.+..... +...+-++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46899999999999999999998543322211 1111 1111 234456889999999987764444 47889999
Q ss_pred EEEEeCCC-hhhHHhHHH-HHHHHHhhc--CCCCcEEEEEeCCCCCC
Q 027292 94 MLVYDISR-RQSFDHIPR-WLEELRSHA--DKNIVIILIGNKSDLEE 136 (225)
Q Consensus 94 i~v~d~~~-~~s~~~~~~-~~~~~~~~~--~~~~piilv~nK~Dl~~ 136 (225)
|||+|... ........+ ++..+.... ....|++|++||.|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 99999985 334444433 333333222 35799999999999864
No 265
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.56 E-value=2.8e-14 Score=97.47 Aligned_cols=136 Identities=22% Similarity=0.233 Sum_probs=96.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc----hhhhhhhHhhhcCCCEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ----ERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----~~~~~~~~~~~~~~d~~i 94 (225)
||+++|..|+|||||.+.+.+... -+..|...++.. . -.+||||. ..+.+........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d-------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFND-------K----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeeccC-------c----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999987643 233332233221 1 14799993 333334445567899999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNVENAFMT 173 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~f~~ 173 (225)
+|-+++++.+.-. ..+... ...|+|-|++|.|+++ ....+..++|..+-|.. +|++|+.++.|+++++.+
T Consensus 70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCC-----cccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 9999998765321 111111 1466899999999985 23456678888888875 999999999999999988
Q ss_pred HHH
Q 027292 174 VLT 176 (225)
Q Consensus 174 l~~ 176 (225)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 754
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.54 E-value=2.1e-13 Score=122.15 Aligned_cols=146 Identities=15% Similarity=0.141 Sum_probs=94.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhc--CcCCC---CC-----------CCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFAR--NEFSL---DS-----------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~--~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (225)
+.+...+|.|+|++++|||||+++|+. +.... .. ....+++.......+.+.+..+.++||||+
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 355678999999999999999999974 11100 00 012223333333334445678999999999
Q ss_pred hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 027292 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-- 154 (225)
Q Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 154 (225)
..|.......+..+|++|+|+|+......+....| ..+.. .+.|+++++||+|+.+.. ......++...++.
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~ 159 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANP 159 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCe
Confidence 88877777788999999999998865433332222 22332 368899999999997532 22333444444443
Q ss_pred --eEEEeccCCC
Q 027292 155 --FFLETSALEA 164 (225)
Q Consensus 155 --~~~~~Sa~~~ 164 (225)
..+++|+..+
T Consensus 160 ~~~~ipisa~~~ 171 (693)
T PRK00007 160 VPIQLPIGAEDD 171 (693)
T ss_pred eeEEecCccCCc
Confidence 2455665554
No 267
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=5.9e-14 Score=100.44 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=112.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..-|++++|-.++|||||++.|...... ...||.-.+..... -.++.++.+|..|+-.-+..|..++..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~l~----Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELS----IGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHHhe----ecCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 3468999999999999999999776543 23333222222211 256778899999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH---HHHc-----------C---CeEE
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEF---AQKE-----------G---LFFL 157 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~-----------~---~~~~ 157 (225)
.+|+.+.+-+.+.+.-+..+.... -.+.|+++.+||+|.... .+.++.+.. .... + +.+|
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 999999998888877777765554 258999999999998753 244443321 1111 1 2367
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 027292 158 ETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 158 ~~Sa~~~~~v~~~f~~l~~~ 177 (225)
.||...+.+..+.|.|+.+.
T Consensus 172 mcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEccCccceeeeehhhh
Confidence 88988888888888877654
No 268
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.5e-13 Score=112.11 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=106.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCC-----------------------------CCCCCcceeeeEEEEEEECCE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFS-----------------------------LDSKATIGVEFQTRTLVIQHK 64 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 64 (225)
....++++|+|+..+|||||+-+|+...-. ....+..+.+.......+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 346789999999999999999998762110 111233355666666666777
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh---hHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ---SFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRA 139 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 139 (225)
.+.+.|+|+||+..|-........+||++|||+|+.+.+ .+. ...+....+..... -..+|+++||+|+.+-++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCH
Confidence 788999999999999988888899999999999998753 221 11122222333333 345888999999986333
Q ss_pred CCHHH----HHHHHHHcC-----CeEEEeccCCCCCHHH
Q 027292 140 VPTED----AKEFAQKEG-----LFFLETSALEATNVEN 169 (225)
Q Consensus 140 ~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 169 (225)
...++ +..+.+..| ++|+++|+..|.|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 33333 233333333 5699999999999764
No 269
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.52 E-value=6.7e-13 Score=111.06 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=56.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEE---------------------C-CEEEEEEEEeCCC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVI---------------------Q-HKSVKAQIWDTAG 75 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~Dt~G 75 (225)
++|+++|.++||||||+|+|++........+..+.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987765433333232222222111 1 2346789999999
Q ss_pred c----hhhhhhhHhh---hcCCCEEEEEEeCC
Q 027292 76 Q----ERYRAVTSAY---YRGAVGAMLVYDIS 100 (225)
Q Consensus 76 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 100 (225)
. .....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333344444 88999999999996
No 270
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.51 E-value=8.3e-13 Score=104.51 Aligned_cols=162 Identities=17% Similarity=0.327 Sum_probs=119.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC--EEEEEEEEeCCCchhhhhhhHhhhcCC---
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH--KSVKAQIWDTAGQERYRAVTSAYYRGA--- 90 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~--- 90 (225)
.--+|+|+|+.|+||||||.+|.+.+ .+.+..+.+|....++.+. ...++.+|-..|+.-+..+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34689999999999999999998865 4555556777766665433 345678898889877777766665533
Q ss_pred -CEEEEEEeCCCh-hhHHhHHHHHHHHHhhcC------------------------------------------------
Q 027292 91 -VGAMLVYDISRR-QSFDHIPRWLEELRSHAD------------------------------------------------ 120 (225)
Q Consensus 91 -d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~------------------------------------------------ 120 (225)
-++|++.|++++ .-++.+..|...+.++..
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 468889999987 556667777543322110
Q ss_pred -------------CCCcEEEEEeCCCCC----CCCCCC-------HHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 121 -------------KNIVIILIGNKSDLE----EQRAVP-------TEDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 121 -------------~~~piilv~nK~Dl~----~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
.++|++||++|+|.. .+-+.. ...+++||..+|+.+|.+|+++..|++-+..+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 158999999999983 222222 22367889999999999999999999999999998
Q ss_pred HHHH
Q 027292 177 EIFN 180 (225)
Q Consensus 177 ~~~~ 180 (225)
+++-
T Consensus 288 r~yG 291 (473)
T KOG3905|consen 288 RSYG 291 (473)
T ss_pred HhcC
Confidence 8754
No 271
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=9.1e-13 Score=98.40 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=77.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc---CCCEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR---GAVGAM 94 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~~i 94 (225)
-.|+++|..++|||+|+-.|..+....... .++.....+.+ ..-.++++|.|||++.+.-...+++ .+-++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~--gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRL--GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEee--cCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 579999999999999999999884433221 12222222222 2223789999999998876666666 789999
Q ss_pred EEEeCCC-hhhHHhH-HHHHHHHHhh--cCCCCcEEEEEeCCCCC
Q 027292 95 LVYDISR-RQSFDHI-PRWLEELRSH--ADKNIVIILIGNKSDLE 135 (225)
Q Consensus 95 ~v~d~~~-~~s~~~~-~~~~~~~~~~--~~~~~piilv~nK~Dl~ 135 (225)
||+|..- ......+ ..++..+... +....|++++.||.|+.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 9999875 2223333 3344444444 35679999999999984
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.48 E-value=1e-12 Score=117.75 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=75.2
Q ss_pred EcCCCCCHHHHHHHHhcCcCCCCC----------------CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhh
Q 027292 23 IGDSAVGKSQILARFARNEFSLDS----------------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAY 86 (225)
Q Consensus 23 lG~~g~GKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 86 (225)
+|+.++|||||+++|+...-.... ....+++.......+...++.+.+|||||+..|...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999653211000 0011222333333344456889999999999888888888
Q ss_pred hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
+..+|++++|+|++..........| ..+.. .+.|+++|+||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 9999999999999876554433333 23322 378999999999985
No 273
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.48 E-value=7.5e-13 Score=105.81 Aligned_cols=152 Identities=23% Similarity=0.223 Sum_probs=109.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCC-------------------------------CCCCCcceeeeEEEEEEEC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFS-------------------------------LDSKATIGVEFQTRTLVIQ 62 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 62 (225)
....+|++.+|...=||||||-+|++..-. .......|++.......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 345789999999999999999999762110 0112444666666666667
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH
Q 027292 63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT 142 (225)
Q Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 142 (225)
....+|.+-|||||++|..........+|++|+++|+... ...-.+-...+..... -..++|.+||+||.+..+...
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence 7888999999999999998888888899999999999642 1111111222333332 356899999999988655444
Q ss_pred HH----HHHHHHHcCCe---EEEeccCCCCCHH
Q 027292 143 ED----AKEFAQKEGLF---FLETSALEATNVE 168 (225)
Q Consensus 143 ~~----~~~~~~~~~~~---~~~~Sa~~~~~v~ 168 (225)
+. -..|+.++++. ++++||..|.||-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 43 34577788764 9999999999875
No 274
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.47 E-value=2.7e-13 Score=121.84 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=82.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC---------------cCCCC---CCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN---------------EFSLD---SKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 75 (225)
.+...||+|+|+.++|||||+++|+.. .+... +..+.........+.+++..+.+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 345789999999999999999999752 11111 111222222222233567788999999999
Q ss_pred chhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
+..|.......+..+|++|+|+|+...-..+....|. .+. ..+.|+++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QAL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHH---HcCCCEEEEEEChhccc
Confidence 9998888888999999999999998743322222222 222 23678889999999853
No 275
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.46 E-value=1.3e-12 Score=100.90 Aligned_cols=161 Identities=16% Similarity=0.158 Sum_probs=88.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC--cceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhh----H
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKA--TIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVT----S 84 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~----~ 84 (225)
++|+|+|.+|+||||++|.+++......... ..+.......... .+..+.++||||-.. ..... .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~--~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV--DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE--TTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee--cceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999999776544421 1122233323333 346688999999221 11111 1
Q ss_pred hhhcCCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC-------HHHHHHHHHHcCCeE
Q 027292 85 AYYRGAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP-------TEDAKEFAQKEGLFF 156 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~ 156 (225)
...+..|++|||+...+... -..+..++..+....- -..++||.|..|........ ....+.+.+..+-.|
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH-HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 23457899999999984321 1122233333322211 13477777888765433311 122455666677778
Q ss_pred EEeccC------CCCCHHHHHHHHHHHHHHH
Q 027292 157 LETSAL------EATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 157 ~~~Sa~------~~~~v~~~f~~l~~~~~~~ 181 (225)
...+.+ ....+.++|+.+-+.+.+.
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 877766 2345677777666665554
No 276
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.45 E-value=2.7e-12 Score=101.17 Aligned_cols=122 Identities=13% Similarity=0.150 Sum_probs=73.5
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC-cceeeeEEEEEEECCEEEEEEEEeCCCchhhh------h---
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR------A--- 81 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~--- 81 (225)
+..+..++|+|+|.+|+|||||+|+|++......... ..+..... ......+..+.+|||||..... .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~--~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVRE--VSGTVDGFKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEE--EEEEECCeEEEEEECCCcCcchhhHHHHHHHH
Confidence 3456789999999999999999999999765333221 11222222 2222344678999999954331 0
Q ss_pred -hhHhhhc--CCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCC--CCcEEEEEeCCCCCC
Q 027292 82 -VTSAYYR--GAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADK--NIVIILIGNKSDLEE 136 (225)
Q Consensus 82 -~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 136 (225)
....++. ..|++++|..++... ... -...++.+.+.... -.++++|.||+|...
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 0122332 578888887666422 211 12334444443331 146999999999854
No 277
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.45 E-value=3.5e-12 Score=102.26 Aligned_cols=122 Identities=10% Similarity=0.070 Sum_probs=72.1
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh-------hH
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV-------TS 84 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~ 84 (225)
.....++|+|+|.+|+||||++|+|++........ ...+......... ..+..+.+|||||....... ..
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~--~~G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE--ECCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 34578999999999999999999999876533221 1111222122222 24578999999996543211 11
Q ss_pred hhh--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCC
Q 027292 85 AYY--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEE 136 (225)
Q Consensus 85 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 136 (225)
.++ ...|+++||..++...-.+.-...++.+..... .-.++||+.|+.|...
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 122 268999999765532111111223344444332 1246899999999764
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.44 E-value=5.7e-12 Score=115.45 Aligned_cols=144 Identities=18% Similarity=0.175 Sum_probs=95.1
Q ss_pred CHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE----------------EEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 29 GKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK----------------SVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 29 GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
+||||+.+|-+...........+.......+..+.. ...+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 399999999887765554444443333333332210 1138999999999999888888889999
Q ss_pred EEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH------------HH-HHHH--------
Q 027292 93 AMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT------------ED-AKEF-------- 148 (225)
Q Consensus 93 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~------------~~-~~~~-------- 148 (225)
+++|+|+++ +.+.+.+ ..+.. .+.|+++|+||+|+...+.... +. ..++
T Consensus 553 vlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999986 3343332 22222 2689999999999964322110 00 1111
Q ss_pred --HHH-------------c--CCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292 149 --AQK-------------E--GLFFLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 149 --~~~-------------~--~~~~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
..+ + .++++++||++|+|+++++.+|.....
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 011 1 356999999999999999988765543
No 279
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.42 E-value=9.4e-12 Score=101.72 Aligned_cols=119 Identities=23% Similarity=0.261 Sum_probs=83.8
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh----------hhHHhHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR----------QSFDHIPRWLEELRSHA-DKNIVIILIGNKS 132 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 132 (225)
..+.+.+||++|+...+..|..++.+++++|||+|+++. ..+......+..+.+.. -.+.|++|++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 456788999999999999999999999999999999874 22333333333333322 2579999999999
Q ss_pred CCCC----------------CCCCCHHHHHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292 133 DLEE----------------QRAVPTEDAKEFAQK----------EGLFFLETSALEATNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 133 Dl~~----------------~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~ 182 (225)
|+.. ......+.+..+... ..+....++|.+..++..+|+.+.+.+++..
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 9621 102233444333221 2244677899999999999999999888764
No 280
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.42 E-value=5e-12 Score=106.88 Aligned_cols=169 Identities=20% Similarity=0.241 Sum_probs=128.0
Q ss_pred CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292 9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR 88 (225)
Q Consensus 9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 88 (225)
.+++.....+.+.|+|+.++|||.|++.++++.+...+..+....+....+...+....+.+-|.+-. ....+.+.- .
T Consensus 417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~ 494 (625)
T KOG1707|consen 417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A 494 (625)
T ss_pred ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence 34566778999999999999999999999999888877677666777777777777777888887754 222222222 6
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCH
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-FLETSALEATNV 167 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 167 (225)
.+|+++++||.+++.+++.+...++.-... ...|+++|++|+|+.+..+...-.-.+++++++++ .+.+|.+....
T Consensus 495 ~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 495 ACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred eeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence 789999999999999999877666554333 48999999999999875433323338899999987 67777775333
Q ss_pred HHHHHHHHHHHHHHH
Q 027292 168 ENAFMTVLTEIFNIV 182 (225)
Q Consensus 168 ~~~f~~l~~~~~~~~ 182 (225)
..+|..|...+.--+
T Consensus 572 ~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 572 NELFIKLATMAQYPH 586 (625)
T ss_pred chHHHHHHHhhhCCC
Confidence 888988888776555
No 281
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.7e-12 Score=110.93 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=110.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC----------------CEEEEEEEEeCCCchhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ----------------HKSVKAQIWDTAGQERY 79 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~~ 79 (225)
..+-++|+|+..+|||-|+..+-+.........+.+.......+... .....+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45779999999999999999998765554443332222222111110 11234789999999999
Q ss_pred hhhhHhhhcCCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-------------CHH
Q 027292 80 RAVTSAYYRGAVGAMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-------------PTE 143 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------------~~~ 143 (225)
..++......+|.+|+|+|+.+ +.+.+. ++.+ ...+.|+||.+||+|..-.|.. ..+
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lL---R~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLL---RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHH----HHHH---HhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9999999999999999999997 334333 2333 3348999999999997422210 000
Q ss_pred H-----------HHHHHHH-cC-------------CeEEEeccCCCCCHHHHHHHHHHHHHHHHhhc
Q 027292 144 D-----------AKEFAQK-EG-------------LFFLETSALEATNVENAFMTVLTEIFNIVNKK 185 (225)
Q Consensus 144 ~-----------~~~~~~~-~~-------------~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~~ 185 (225)
. +.+|+.+ ++ +.++++||..|+||.+++-+|++.....+.++
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 0 1122211 11 24788999999999999999999988777644
No 282
>PTZ00258 GTP-binding protein; Provisional
Probab=99.39 E-value=1.2e-11 Score=102.58 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=60.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQER 78 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 78 (225)
....++|.|+|.|++|||||+|+|.+........|.++.+.....+.+.+. ..++.++||||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 456789999999999999999999887765555555555555544443322 23589999999431
Q ss_pred -------hhhhhHhhhcCCCEEEEEEeCC
Q 027292 79 -------YRAVTSAYYRGAVGAMLVYDIS 100 (225)
Q Consensus 79 -------~~~~~~~~~~~~d~~i~v~d~~ 100 (225)
........++.+|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112233567899999999974
No 283
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.38 E-value=1.7e-12 Score=102.33 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=77.7
Q ss_pred hhhhhhhHhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027292 77 ERYRAVTSAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF 155 (225)
Q Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 155 (225)
+++..+...++.++|++++|||+.++. +++.+.+|+..+.. .+.|+++|+||+|+.+.+....+....+ ..++..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 577778888999999999999999877 89999999987654 3799999999999975443333334333 457889
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 027292 156 FLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 156 ~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
++++||+++.|++++|+.+.+
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998764
No 284
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.38 E-value=3.4e-12 Score=116.48 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=81.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCC----------------CCCCcceeeeEEEEEEE--------------C
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSL----------------DSKATIGVEFQTRTLVI--------------Q 62 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~ 62 (225)
..+...+|+|+|+.++|||||+++|+...-.. +.....++......+.+ .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 45667899999999999999999998633110 00111111111111211 1
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
...+.+.++||||+..|.......++.+|++|+|+|+...-.......|.. +. ..+.|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HH---HCCCCEEEEEECCccc
Confidence 236788999999999999888889999999999999997544333333332 22 2378999999999986
No 285
>PRK13768 GTPase; Provisional
Probab=99.37 E-value=5.4e-12 Score=99.94 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=69.6
Q ss_pred EEEEEeCCCchhh---hhhhHhh---hcC--CCEEEEEEeCCChhhHHhH--HHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 67 KAQIWDTAGQERY---RAVTSAY---YRG--AVGAMLVYDISRRQSFDHI--PRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 67 ~~~l~Dt~G~~~~---~~~~~~~---~~~--~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
.+.+||+||+.+. ...+..+ +.. .+++++|+|+......... ..|+...... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5899999997663 2333222 222 8999999999764432222 2333322222 23799999999999975
Q ss_pred CCCCCHHHHHH----------------------------HHHHcC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 137 QRAVPTEDAKE----------------------------FAQKEG--LFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 137 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
..+. +...+ ..+..+ .+++++|++++.|+++++++|.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 3221 11111 122333 4689999999999999999987765
No 286
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.35 E-value=2.3e-11 Score=92.93 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=64.6
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDA 145 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 145 (225)
..+.++++.|......... .-+|.+|.|+|+.+..+... .+...+ ...-++++||+|+.+......+.+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 4566788888422111111 12688999999987655321 111111 122378889999985322334444
Q ss_pred HHHHHH--cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 146 KEFAQK--EGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 146 ~~~~~~--~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
.+..+. .+++++++|+++|.|++++|+++.+..
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444444 457799999999999999999998654
No 287
>PTZ00416 elongation factor 2; Provisional
Probab=99.35 E-value=7.6e-12 Score=114.02 Aligned_cols=118 Identities=17% Similarity=0.181 Sum_probs=79.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCcceeeeEEEEEEEC--------CEEEEEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLD----------------SKATIGVEFQTRTLVIQ--------HKSVKAQ 69 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~ 69 (225)
.+...+|+|+|+.++|||||+++|+...-... .....++......+.+. .....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45566999999999999999999986321110 01111111111122222 2267799
Q ss_pred EEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
++||||+..|.......++.+|++|+|+|+...-......-| ..+.. .+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence 999999999988888889999999999999875433332223 33332 368999999999986
No 288
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.35 E-value=6.1e-11 Score=97.77 Aligned_cols=119 Identities=20% Similarity=0.222 Sum_probs=82.6
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh----------hHHhHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ----------SFDHIPRWLEELRSHA-DKNIVIILIGNKSD 133 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~piilv~nK~D 133 (225)
...+.+||.+|+...+..|..++.+++++|||+|+++.+ .+......+..+.+.. -.+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 356889999999999999999999999999999999732 2333333334433322 25799999999999
Q ss_pred CCC--------------CC-CCCHHHHHHHHHH-----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 134 LEE--------------QR-AVPTEDAKEFAQK-----------EGLFFLETSALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 134 l~~--------------~~-~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
+.. .. ..+.+.+..+... ..+..+.++|.+-.++..+|+.+.+.+++...
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 831 00 1233333332211 12346778899999999999998888887643
No 289
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.35 E-value=2.8e-11 Score=109.15 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=79.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC----------------CCcceeeeEEEE--EEECCEEEEEEEEeCCC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDS----------------KATIGVEFQTRT--LVIQHKSVKAQIWDTAG 75 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~~~~~~l~Dt~G 75 (225)
.++.-+|+|+|+.++|||||+.+|+...-.... ....++...... +...+.+..+.|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 456778999999999999999999763211000 011111111111 12344578899999999
Q ss_pred chhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
+..|.......++.+|++|+|+|+...........|... ... +.|.|+++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LRE---RVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HHc---CCCeEEEEECchhh
Confidence 999988888899999999999999875433333333322 222 56788999999985
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.34 E-value=2e-11 Score=100.93 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=100.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC--------------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLD--------------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA 81 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 81 (225)
..-+|.|+.+...|||||+..|+.++-... -....+++...+..-+.+.+..+.++|||||..|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 345899999999999999999987432111 123345666666666677889999999999999999
Q ss_pred hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHH-------HHcC
Q 027292 82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP-TEDAKEFA-------QKEG 153 (225)
Q Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~-------~~~~ 153 (225)
..+..+.-.|++++++|+.+..--+. +--+ ......+.+.|+|+||+|.++.+... .+++..+. .+++
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT-rFVl---kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT-RFVL---KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch-hhhH---HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 99999999999999999987322111 1111 22222366778888999997643211 22333333 3456
Q ss_pred CeEEEeccCCC
Q 027292 154 LFFLETSALEA 164 (225)
Q Consensus 154 ~~~~~~Sa~~~ 164 (225)
++++..|+..|
T Consensus 160 FPivYAS~~~G 170 (603)
T COG1217 160 FPIVYASARNG 170 (603)
T ss_pred CcEEEeeccCc
Confidence 78888888765
No 291
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.33 E-value=2.1e-11 Score=85.75 Aligned_cols=114 Identities=35% Similarity=0.421 Sum_probs=81.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997776643333 2222 222334456778999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE 168 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 168 (225)
|+..+..+++.+ |...+......+.|.++++||.|+.+......+.. ..++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999888765 87777665556788999999999854333332222 234567888888874
No 292
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.33 E-value=3.8e-11 Score=102.06 Aligned_cols=164 Identities=20% Similarity=0.354 Sum_probs=114.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC--EEEEEEEEeCCCchhhhhhhHhhhcCC---
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH--KSVKAQIWDTAGQERYRAVTSAYYRGA--- 90 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~--- 90 (225)
..-.|+|+|..++|||||+.+|.+.+ ...++.+.+|....+..++ ...++.+|...|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34689999999999999999997653 3445666777666655332 335689999988777777666555432
Q ss_pred -CEEEEEEeCCChhh-HHhHHHHHHHH-------------------------Hhhc------------------------
Q 027292 91 -VGAMLVYDISRRQS-FDHIPRWLEEL-------------------------RSHA------------------------ 119 (225)
Q Consensus 91 -d~~i~v~d~~~~~s-~~~~~~~~~~~-------------------------~~~~------------------------ 119 (225)
-++|+|.|.+.+-. ++.+..|+..+ .++.
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 47888999998643 44556664322 1100
Q ss_pred -------------CCCCcEEEEEeCCCCCC----CCC-------CCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 120 -------------DKNIVIILIGNKSDLEE----QRA-------VPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 120 -------------~~~~piilv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
+.++|++||++|+|... ... .....++.+|..+|+.+|.+|++...+++.++.+|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 00379999999999732 111 112336778889999999999999999999999988
Q ss_pred HHHHHHH
Q 027292 176 TEIFNIV 182 (225)
Q Consensus 176 ~~~~~~~ 182 (225)
+.++...
T Consensus 261 h~l~~~~ 267 (472)
T PF05783_consen 261 HRLYGFP 267 (472)
T ss_pred HHhccCC
Confidence 8876543
No 293
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.8e-11 Score=103.68 Aligned_cols=153 Identities=22% Similarity=0.235 Sum_probs=106.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC--------------------cC---------CCCCCCcceeeeEEEEEEECCEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARN--------------------EF---------SLDSKATIGVEFQTRTLVIQHKSV 66 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~--------------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (225)
..++.+|+|+..+|||||+-+++.. .. .....+..|.+......+++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 5789999999999999999998651 11 112234445666666667777788
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh---hhHHh---HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292 67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR---QSFDH---IPRWLEELRSHADKNIVIILIGNKSDLEEQRAV 140 (225)
Q Consensus 67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~---~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 140 (225)
.+.|+|.||+..|-.........+|++|+|+|++.. ..|+. .++ ...+.+..+ -..+||++||+|+.+=.+.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~Lg-i~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSLG-ISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHcC-cceEEEEeecccccCccHH
Confidence 899999999999998888889999999999999852 23332 122 222333333 4568999999999863333
Q ss_pred CHHHH----HHHH-HHcC-----CeEEEeccCCCCCHHHH
Q 027292 141 PTEDA----KEFA-QKEG-----LFFLETSALEATNVENA 170 (225)
Q Consensus 141 ~~~~~----~~~~-~~~~-----~~~~~~Sa~~~~~v~~~ 170 (225)
..+++ ..|. +..| +.|+++|+..|+|+-..
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 33332 2333 3334 45999999999997643
No 294
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=6.6e-12 Score=99.35 Aligned_cols=167 Identities=18% Similarity=0.136 Sum_probs=109.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCcceeeeE------------------EEEEEEC------CEEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFS---LDSKATIGVEFQ------------------TRTLVIQ------HKSVK 67 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~---~~~~~~~~~~~~------------------~~~~~~~------~~~~~ 67 (225)
+..++|.++|+...|||||..+|.+--.. .+-....++... ...-.+. .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 67899999999999999999999762110 000000000000 0000011 12356
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHH
Q 027292 68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDA 145 (225)
Q Consensus 68 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~ 145 (225)
+.|.|.|||+-.-+.......-.|++++|++++.+-.-.+..+-+..+.-.. -..+|++-||+|+...... ..+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 8899999999887777777777899999999998544444444444443332 2348899999999753221 23445
Q ss_pred HHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 146 KEFAQKE---GLFFLETSALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 146 ~~~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
++|.+-. +++++++||..+.|++.+++.|.+.+-....
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 5555432 5789999999999999999998887744433
No 295
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.32 E-value=2.5e-11 Score=93.49 Aligned_cols=150 Identities=11% Similarity=0.078 Sum_probs=82.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCC------------CCCCCcc--eeeeEEEEEEECC------------------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFS------------LDSKATI--GVEFQTRTLVIQH------------------ 63 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~------------~~~~~~~--~~~~~~~~~~~~~------------------ 63 (225)
....|.|+|+.|+|||||+++++..... ....... ........+ .++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l-~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQI-NTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEE-cCCCcccCChHHHHHHHHHhc
Confidence 5789999999999999999998753110 0000000 000000000 000
Q ss_pred -EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH
Q 027292 64 -KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT 142 (225)
Q Consensus 64 -~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 142 (225)
....+.++||.|.-... ..+....+..+.|+|..+.+... ...... .+.|.++++||+|+.+......
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~-----~~~~~~---~~~a~iiv~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP-----LKYPGM---FKEADLIVINKADLAEAVGFDV 168 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh-----hhhHhH---HhhCCEEEEEHHHccccchhhH
Confidence 12346666776621000 01111234455667766433211 111111 1467799999999975322223
Q ss_pred HHHHHHHHHcC--CeEEEeccCCCCCHHHHHHHHHHH
Q 027292 143 EDAKEFAQKEG--LFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 143 ~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
+......++.+ ++++++|++++.|++++|+++.+.
T Consensus 169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34444444433 789999999999999999999874
No 296
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.31 E-value=2.3e-11 Score=94.44 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=69.5
Q ss_pred EEEEEEeCCCchh-hh-----hhhHhhhc--CCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 66 VKAQIWDTAGQER-YR-----AVTSAYYR--GAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 66 ~~~~l~Dt~G~~~-~~-----~~~~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
..+.++||||+-+ |. +..-..+. ..-++++|+|..+..+ .-.+...+-...-....+.|.|++.||+|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 4588999999543 21 11222222 3457778888765322 22232222222223345899999999999975
Q ss_pred CC-----CCCHHHHHHHHHH---------------------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 137 QR-----AVPTEDAKEFAQK---------------------EGLFFLETSALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 137 ~~-----~~~~~~~~~~~~~---------------------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
.. ..+.+..++...+ .++..+-+|+.+|.|++++|..+-..+.+...
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE 268 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence 21 1122222221111 24568889999999999999988877755544
No 297
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.30 E-value=5.6e-11 Score=88.35 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=43.8
Q ss_pred EEEEeCCCchh----hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027292 68 AQIWDTAGQER----YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKS 132 (225)
Q Consensus 68 ~~l~Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 132 (225)
+.|+||||-.. ...++..+++.+|++|+|.++.+..+......|.+..... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 88999999543 3456778889999999999999865555555554444433 34488898984
No 298
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.30 E-value=7.9e-11 Score=91.81 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=82.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
....|+|+|.+|+|||||++.+.............+. ..+ .......+.++||||.. .. .....+.+|++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll 109 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL 109 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence 4577999999999999999999864221111111111 111 12346678899999854 22 2334678999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCCCCCH---HHHHH-HHHH--cCCeEEEeccCCCCCH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHADKNIVI-ILIGNKSDLEEQRAVPT---EDAKE-FAQK--EGLFFLETSALEATNV 167 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~---~~~~~-~~~~--~~~~~~~~Sa~~~~~v 167 (225)
|+|+........ ..++..+... +.|. ++|+||+|+.+...... ..+++ +..+ .+.+++.+||+++-.+
T Consensus 110 viDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 110 LIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 999986433222 2233333332 5674 55999999864221111 11222 2211 2357999999987544
No 299
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.28 E-value=2.6e-11 Score=101.83 Aligned_cols=180 Identities=20% Similarity=0.349 Sum_probs=136.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..+|+.|||..++|||+|+++++.+.|.....+. -..+.+++..++....+.+.|..|.. ...|-..+|++||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e--~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE--GGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCc--CccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence 4689999999999999999999999987777666 34556667777888888899988843 2345667899999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHH-cCCeEEEeccCCCCCHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE--EQRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAF 171 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~f 171 (225)
||.+.+..+++.+..+...+..+.. ..+|+++++++.-.. ..+....+..++++.+ ..+.+|++++.+|.++..+|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 9999999999988776666554443 468888888776442 2344555566665544 45779999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCCCCCCCC
Q 027292 172 MTVLTEIFNIVNKKNLTAGEGQGNGNPASLS 202 (225)
Q Consensus 172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (225)
+.+...+...+...........+...+.++.
T Consensus 182 ~~~~~k~i~~~~~qq~~~~~~~s~~~s~~~s 212 (749)
T KOG0705|consen 182 QEVAQKIVQLRKYQQLPASSSKSLPESPSHS 212 (749)
T ss_pred HHHHHHHHHHHhhhhcccccccccccCCccc
Confidence 9999999988777766665555444444444
No 300
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.6e-10 Score=92.51 Aligned_cols=163 Identities=14% Similarity=0.136 Sum_probs=96.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCc-------CCCCCCCcceeeeEEEEEE-------ECCEEEEEEEEeCCCchhhh
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNE-------FSLDSKATIGVEFQTRTLV-------IQHKSVKAQIWDTAGQERYR 80 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~ 80 (225)
+..+++.++|+..+|||+|.++|..-. -+.+..+..+.+.....+. ..++..++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 445999999999999999999996521 1122222223333332222 23556789999999997655
Q ss_pred hhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC--CCCHHH-HHHHHHHc-----
Q 027292 81 AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR--AVPTED-AKEFAQKE----- 152 (225)
Q Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~-~~~~~~~~----- 152 (225)
........-.|..++|+|+......+...-+ .+-+... ...|+|+||+|...+. .-..+. ..++.+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 5555555667999999999864333332221 1222222 2256777888874321 111111 22222221
Q ss_pred --CCeEEEeccCCC----CCHHHHHHHHHHHHHHH
Q 027292 153 --GLFFLETSALEA----TNVENAFMTVLTEIFNI 181 (225)
Q Consensus 153 --~~~~~~~Sa~~~----~~v~~~f~~l~~~~~~~ 181 (225)
+.+++++|+..| +++.++.+.|-.++.+.
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 368999999999 56666666655555443
No 301
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.24 E-value=1.8e-10 Score=94.08 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=65.4
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CH
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PT 142 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~ 142 (225)
++.+.|+||+|...-... ....+|.+++|.+....+....+. ..+.+ ..-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHH
Confidence 467899999996632221 466799999997744444433322 11222 223788999998753211 11
Q ss_pred HHHHHHHHH-------cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292 143 EDAKEFAQK-------EGLFFLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 143 ~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
.+.+..... +..+++.+|++++.|++++++.+.+..-
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 122222221 3357999999999999999998887654
No 302
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.24 E-value=3.9e-12 Score=99.64 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=59.9
Q ss_pred EEEEEeCCCchhhhhhhHhhh--------cCCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292 67 KAQIWDTAGQERYRAVTSAYY--------RGAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137 (225)
Q Consensus 67 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (225)
.+.++|||||.++...+.... ...-++++++|+....+ ...+..++..+.-....+.|.|.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 589999999988665544433 34568889999876433 333444444443333348999999999999752
Q ss_pred C-------CCC------------HHHHHHHHH---HcC-C-eEEEeccCCCCCHHHHHHHHHHH
Q 027292 138 R-------AVP------------TEDAKEFAQ---KEG-L-FFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 138 ~-------~~~------------~~~~~~~~~---~~~-~-~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
. ... ....++++. ..+ + .++++|+.+++++.+++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 1 000 000111111 123 3 59999999999999998866543
No 303
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.4e-10 Score=102.71 Aligned_cols=119 Identities=16% Similarity=0.195 Sum_probs=89.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCcceeeeEEEEEEECCE-EEEEEEEeCCCc
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLD----------------SKATIGVEFQTRTLVIQHK-SVKAQIWDTAGQ 76 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~ 76 (225)
....-||.|+|+..+|||||..+|+...-... .....+++.....+...+. .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 56778999999999999999999975211100 0122345555555555566 599999999999
Q ss_pred hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
-+|.......++..|++|+|+|+...-..+.-..|.+.. ..++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccc
Confidence 999999999999999999999999755544444554443 23799999999999864
No 304
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.23 E-value=7.6e-10 Score=91.07 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=57.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEE---------------EEEEEEeCCCchh----
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS---------------VKAQIWDTAGQER---- 78 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~---- 78 (225)
++|.++|.|++|||||+|+|.+........|.++.+.....+.+.... ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999977544444444444444444433321 2589999999432
Q ss_pred ---hhhhhHhhhcCCCEEEEEEeCC
Q 027292 79 ---YRAVTSAYYRGAVGAMLVYDIS 100 (225)
Q Consensus 79 ---~~~~~~~~~~~~d~~i~v~d~~ 100 (225)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112233467899999999984
No 305
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.23 E-value=7.3e-10 Score=91.46 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=89.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC----cCC------------CCCCCc---ceee--e---EEEEEE-ECCEEEEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN----EFS------------LDSKAT---IGVE--F---QTRTLV-IQHKSVKA 68 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~----~~~------------~~~~~~---~~~~--~---~~~~~~-~~~~~~~~ 68 (225)
-...+-|.|+|+.++||||||++|.+. ... ++..+. ++++ + ....+. .++...++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 345688999999999999999999886 222 111111 1111 2 122222 24556789
Q ss_pred EEEeCCCchh--------hhh-----------------h----hHhhhc-CCCEEEEEE-eCC-----ChhhHHhHHHHH
Q 027292 69 QIWDTAGQER--------YRA-----------------V----TSAYYR-GAVGAMLVY-DIS-----RRQSFDHIPRWL 112 (225)
Q Consensus 69 ~l~Dt~G~~~--------~~~-----------------~----~~~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~ 112 (225)
.++||+|-.. -.. . ....+. .+|+.|+|. |.+ .....+.-.+|+
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 9999999221 011 0 223344 899999998 764 111222234566
Q ss_pred HHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292 113 EELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE 163 (225)
Q Consensus 113 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (225)
..+++. ++|+++++|+.|..... ..+...++..+++++++.+|+.+
T Consensus 174 ~eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 174 EELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred HHHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHH
Confidence 666655 89999999999943211 33445566677888877777654
No 306
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.8e-10 Score=93.86 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=107.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcC---CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEF---SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
+.|+..|+-..|||||+..+.+... +......++++.. ....+..+..+.|+|.||++++-......+...|.++
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg--~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~al 78 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLG--FYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYAL 78 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeee--eEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEE
Confidence 3578899999999999999987533 2333344344444 3444445558999999999999988888889999999
Q ss_pred EEEeCCCh---hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc---CCeEEEeccCCCCCHH
Q 027292 95 LVYDISRR---QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE---GLFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~ 168 (225)
+|++.++. ++.+. +..+ .... ....++|+||+|..+... ..+..++..... .+++|.+|+++|.|++
T Consensus 79 LvV~~deGl~~qtgEh----L~iL-dllg-i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 79 LVVAADEGLMAQTGEH----LLIL-DLLG-IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIE 151 (447)
T ss_pred EEEeCccCcchhhHHH----HHHH-HhcC-CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHH
Confidence 99999753 33332 2222 2222 234688999999886331 222233333222 4668999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 169 NAFMTVLTEIF 179 (225)
Q Consensus 169 ~~f~~l~~~~~ 179 (225)
++.+.|.+..-
T Consensus 152 ~Lk~~l~~L~~ 162 (447)
T COG3276 152 ELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHhhh
Confidence 99999999884
No 307
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.20 E-value=2.1e-10 Score=91.97 Aligned_cols=114 Identities=16% Similarity=0.281 Sum_probs=68.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC----------CCcceeeeEEEEEEECCEEEEEEEEeCCCch--------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS----------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE-------- 77 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------- 77 (225)
-.++|+|+|.+|+|||||||.|++....... ..+..+......+..++..+.+.++||||-.
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999985443331 1222334444445556788899999999911
Q ss_pred ----------hhhhhhHh---------hhcCCCEEEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 78 ----------RYRAVTSA---------YYRGAVGAMLVYDISRR--QSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 78 ----------~~~~~~~~---------~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
+|...... .=...|+++++++.+.. ..++ +..+++... .+++|-|+.|+|..
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D-----i~~mk~Ls~-~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD-----IEFMKRLSK-RVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH-----HHHHHHHTT-TSEEEEEESTGGGS
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH-----HHHHHHhcc-cccEEeEEeccccc
Confidence 11111110 11256999999998642 1222 223333333 57899999999974
No 308
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.3e-10 Score=88.88 Aligned_cols=143 Identities=19% Similarity=0.225 Sum_probs=101.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCc----------CC----CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNE----------FS----LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (225)
...-+||..+|+...|||||..++..-- |. .......+++.....+.++.....+...|+||+..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 4457999999999999999998876411 10 112234467777777778788888999999999999
Q ss_pred hhhhHhhhcCCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHHc
Q 027292 80 RAVTSAYYRGAVGAMLVYDISRR---QSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVP---TEDAKEFAQKE 152 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~ 152 (225)
-.+......+.|++|+|+++++. ++.+. +...++ -+.| +++++||+|+.++++.. ..+++++...+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEH----iLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREH----ILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhh----hhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 88887788899999999999983 33332 111122 2564 78889999998754322 34577788888
Q ss_pred CCe-----EEEeccCC
Q 027292 153 GLF-----FLETSALE 163 (225)
Q Consensus 153 ~~~-----~~~~Sa~~ 163 (225)
+++ ++.-|+..
T Consensus 162 ~f~gd~~Pii~gSal~ 177 (394)
T COG0050 162 GFPGDDTPIIRGSALK 177 (394)
T ss_pred CCCCCCcceeechhhh
Confidence 764 56656543
No 309
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.17 E-value=6.1e-10 Score=96.76 Aligned_cols=122 Identities=13% Similarity=0.151 Sum_probs=74.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-------hh--
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-------AV-- 82 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~-- 82 (225)
+.+..++|+|+|.+|+||||++|.|++........ ...++......... .+..+.++||||..... .+
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i--dG~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE--CCceEEEEECCCCCccccchHHHHHHHH
Confidence 45567899999999999999999999976433322 12122222222222 34678999999954321 11
Q ss_pred -hHhhhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 027292 83 -TSAYYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN--IVIILIGNKSDLEE 136 (225)
Q Consensus 83 -~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 136 (225)
...++. .+|++|+|..++.......-..+++.+...+..+ ..+|||.|..|...
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 122333 5899999998764322112224555555555422 44788889998864
No 310
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.16 E-value=2.2e-09 Score=87.40 Aligned_cols=120 Identities=23% Similarity=0.285 Sum_probs=83.9
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh-------hHHhHHHHHHHHHhhcC----CCCcEEEEEeCC
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ-------SFDHIPRWLEELRSHAD----KNIVIILIGNKS 132 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~----~~~piilv~nK~ 132 (225)
....+.++|++|+...+.-|.+.+.+++++|||+++++.+ ...++.+=+..+...++ .+.++||++||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 4477889999999999999999999999999999998632 23344443344444443 479999999999
Q ss_pred CCCC--------------C-CCCCHHHHHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 133 DLEE--------------Q-RAVPTEDAKEFAQK----------EGLFFLETSALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 133 Dl~~--------------~-~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
|+-+ . .....+++..+... ..+....+.|.+-.+|+.+|..+.+.+...-.
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 9831 0 11233333332211 12446667899999999999999988877643
No 311
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.15 E-value=3.7e-10 Score=92.98 Aligned_cols=161 Identities=13% Similarity=0.162 Sum_probs=78.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcce---eeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh-----h
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIG---VEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSA-----Y 86 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-----~ 86 (225)
...++|+|.|.+|+|||||||+|.+-.-.......+| ++.....+.. ..--.+.+||.||.......... -
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 3578999999999999999999976322221111111 1122222221 12235889999995432222222 3
Q ss_pred hcCCCEEEEEEeCCChhhHHhHHHH-HHHHHhhcCCCCcEEEEEeCCCCC-------CCCCCCHHH----HHHHHHH---
Q 027292 87 YRGAVGAMLVYDISRRQSFDHIPRW-LEELRSHADKNIVIILIGNKSDLE-------EQRAVPTED----AKEFAQK--- 151 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~piilv~nK~Dl~-------~~~~~~~~~----~~~~~~~--- 151 (225)
+...|.+|++.+.. +.....| ...+.+. +.|+.+|-+|+|.. .++....+. +++-+.+
T Consensus 112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 45679887776633 2222222 3334433 78999999999961 122223222 3333222
Q ss_pred -cCC---eEEEeccCCCC--CHHHHHHHHHHHHHHHHh
Q 027292 152 -EGL---FFLETSALEAT--NVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 152 -~~~---~~~~~Sa~~~~--~v~~~f~~l~~~~~~~~~ 183 (225)
.++ ++|-+|..+-. ++..+.+.+.+.+-.+..
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 233 48999988765 466677777766655544
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=1e-09 Score=85.76 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=43.0
Q ss_pred EEEEEEeCCCchh-------------hhhhhHhhhc-CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeC
Q 027292 66 VKAQIWDTAGQER-------------YRAVTSAYYR-GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNK 131 (225)
Q Consensus 66 ~~~~l~Dt~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 131 (225)
..+.++||||-.. ...+...++. ..+++++|+|+...-.......+.+.+. ..+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4588999999531 2234556777 4569999998865322212122222222 237899999999
Q ss_pred CCCCC
Q 027292 132 SDLEE 136 (225)
Q Consensus 132 ~Dl~~ 136 (225)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99875
No 313
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.14 E-value=5.3e-10 Score=83.04 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=87.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEE-------------EEEEE----------------------
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQT-------------RTLVI---------------------- 61 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~---------------------- 61 (225)
.++|.|.|++|||||+|+.+++..-.........+.+.+. ..+..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 6899999999999999999987632111110000001000 00000
Q ss_pred CCEEEEEEEEeCCCchhhhhhhHhhhcCC-CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292 62 QHKSVKAQIWDTAGQERYRAVTSAYYRGA-VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV 140 (225)
Q Consensus 62 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 140 (225)
......+.|++..|.- .......-. +.-|+|+|....+.... +.+...-.-=++|+||.|+...-..
T Consensus 93 ~~~~~Dll~iEs~GNL----~~~~sp~L~d~~~v~VidvteGe~~P~--------K~gP~i~~aDllVInK~DLa~~v~~ 160 (202)
T COG0378 93 DFPDLDLLFIESVGNL----VCPFSPDLGDHLRVVVIDVTEGEDIPR--------KGGPGIFKADLLVINKTDLAPYVGA 160 (202)
T ss_pred cCCcCCEEEEecCcce----ecccCcchhhceEEEEEECCCCCCCcc--------cCCCceeEeeEEEEehHHhHHHhCc
Confidence 0011345566666611 011111223 37888888886543221 0000001124788899999876666
Q ss_pred CHHHHHHHHHHcC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 141 PTEDAKEFAQKEG--LFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 141 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
+.+.+.+-+++.+ .+++++|.++|+|++++++|+...+
T Consensus 161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 6677776666654 7799999999999999999987654
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.10 E-value=8.3e-10 Score=89.73 Aligned_cols=104 Identities=19% Similarity=0.103 Sum_probs=64.0
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH-
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE- 143 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~- 143 (225)
++.+.|+||+|..... ......+|.++++...... +.+......+ .+.|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4678999999954222 2346678888888544322 3332222222 25677999999998753211100
Q ss_pred -----HHHHHHH---HcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292 144 -----DAKEFAQ---KEGLFFLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 144 -----~~~~~~~---~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
....+.. .+..+++++|++++.|++++++++.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0011111 13346899999999999999999988643
No 315
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.3e-09 Score=89.75 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=93.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc--C--------------cCCCC----CCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR--N--------------EFSLD----SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~--~--------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (225)
.-...|+-+|.+|||||-.+|+- + ....+ -....|+.......+++..+..+.+.|||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 34568899999999999999853 1 00000 0123357777777777788899999999999
Q ss_pred hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027292 77 ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF 155 (225)
Q Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 155 (225)
+.|..-...-+..+|.+|+|+|+...-.... ..+++-.+ ..++||+=++||.|... ....+.+.+..+.+++.
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr---lR~iPI~TFiNKlDR~~--rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR---LRDIPIFTFINKLDREG--RDPLELLDEIEEELGIQ 164 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHh---hcCCceEEEeecccccc--CChHHHHHHHHHHhCcc
Confidence 9999888888999999999999986322221 12222222 24899999999999764 23445566666666543
No 316
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=2e-09 Score=82.16 Aligned_cols=155 Identities=14% Similarity=0.231 Sum_probs=86.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC---------CCCcceeeeEEEEEEECCEEEEEEEEeCCCch---------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLD---------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE--------- 77 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------- 77 (225)
..++|+|+|.+|.|||||+|.++....... ...|+.+......+..++-...+.++||||-.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 369999999999999999999987433221 11222222222333345667789999999921
Q ss_pred ---------hh--------hhhhHhhhc--CCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC-
Q 027292 78 ---------RY--------RAVTSAYYR--GAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE- 136 (225)
Q Consensus 78 ---------~~--------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~- 136 (225)
+| ...++..+. ..|++++.+..+.. ++..+ .++++.+.+. +-+|-|+-|+|-.-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v----vNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV----VNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh----heeeeeEeecccccH
Confidence 11 112223333 35777777776642 22222 2333334333 33666778999632
Q ss_pred -CCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 137 -QRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
++..-.+.+++-...+++.+|+-.+.+-..-+..++.-+
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kv 239 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKV 239 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHH
Confidence 121122334455566788877776665444444444333
No 317
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=8.9e-10 Score=94.72 Aligned_cols=119 Identities=23% Similarity=0.287 Sum_probs=85.0
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------------CCcceeeeEEEEEE---ECCEEEEEEEE
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-----------------KATIGVEFQTRTLV---IQHKSVKAQIW 71 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~~~~l~ 71 (225)
+..+...+|.++|+-+.|||+|+.-|....-+.-+ .+..++.....++. ..+..+-++++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 34567899999999999999999988764322111 12222222222322 24567789999
Q ss_pred eCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027292 72 DTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134 (225)
Q Consensus 72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (225)
|||||-.|.......++.+|++++|+|+.+.-.+.. .+. ++..-..+.|+++|+||+|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~---ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERI---IKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHH---HHHHHhccCcEEEEEehhHH
Confidence 999999999888899999999999999997665543 122 22223347999999999996
No 318
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.06 E-value=2.5e-09 Score=86.57 Aligned_cols=115 Identities=12% Similarity=0.235 Sum_probs=71.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC----------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLD----------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER------- 78 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 78 (225)
..++|+++|+.|.|||||+|.|++...... ..++..+......+..++..+.+.++||||-..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 479999999999999999999998633222 224444555555555677788899999999211
Q ss_pred -----------hhhh--------hH-hh-hcCCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 79 -----------YRAV--------TS-AY-YRGAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 79 -----------~~~~--------~~-~~-~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
|+.. +. .+ =..+|++++.+..+.. .+..+ ...+..+.. .+-+|-|+.|+|..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence 1110 00 01 1246899999887642 11111 122333333 34477888999974
No 319
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=6e-10 Score=84.51 Aligned_cols=146 Identities=19% Similarity=0.290 Sum_probs=86.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh-----hhHhhhcCC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLD-SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA-----VTSAYYRGA 90 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~ 90 (225)
.-||+++|.+|+|||++--.++.+-.... ..++-++++.-....+ -....+.+||..|++.+-. .....+.+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf-lGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF-LGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh-hhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35899999999999998766654322111 1222223333222211 1346789999999986432 344567899
Q ss_pred CEEEEEEeCCChhhHHhHHHHHH---HHHhhcCCCCcEEEEEeCCCCCCCCC--CCHH----HHHHHHHHcCCeEEEecc
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLE---ELRSHADKNIVIILIGNKSDLEEQRA--VPTE----DAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~----~~~~~~~~~~~~~~~~Sa 161 (225)
+++|+|||+...+-...+..+-. .+.+.. +...+...++|.|+..... .... ..+.+.....+.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999987654444444433 333333 3566888889999965221 1111 122233334455777776
Q ss_pred CCC
Q 027292 162 LEA 164 (225)
Q Consensus 162 ~~~ 164 (225)
.+.
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 653
No 320
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.99 E-value=4.8e-09 Score=79.67 Aligned_cols=96 Identities=22% Similarity=0.150 Sum_probs=67.5
Q ss_pred chhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----H
Q 027292 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----Q 150 (225)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~ 150 (225)
.+.+..++..++..+|++++|+|+.+... .|...+.... .+.|+++|+||+|+... ....+....+. .
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~ 93 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAA 93 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHh
Confidence 44467888899999999999999987532 1222222222 36899999999999753 23333344333 2
Q ss_pred HcCC---eEEEeccCCCCCHHHHHHHHHHHH
Q 027292 151 KEGL---FFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 151 ~~~~---~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
..+. .++++||+++.|++++++++.+.+
T Consensus 94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 94 GLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred hcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3333 589999999999999999998765
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.97 E-value=7.6e-10 Score=88.27 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=39.3
Q ss_pred CcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 123 IVIILIGNKSDLEEQRAVPTEDAKEFAQKE--GLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 123 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
..-++|+||+|+........+...+..+.. .++++++|+++|+|++++++||..+
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456888999999753222333333334333 4779999999999999999999763
No 322
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.97 E-value=1.3e-09 Score=86.64 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=101.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHh
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ---------ERYRAVTSA 85 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~ 85 (225)
....-|.|+|.+++|||||+++|......+...-.-+.+......+. ..+..+.+.||.|. ..|.++.+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~L-psg~~vlltDTvGFisdLP~~LvaAF~ATLe- 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHL-PSGNFVLLTDTVGFISDLPIQLVAAFQATLE- 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccC-CCCcEEEEeechhhhhhCcHHHHHHHHHHHH-
Confidence 34567999999999999999999865443333211122222222222 23446778899993 23444333
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc----EEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV----IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (225)
....+|.++-|.|++++..-++...-+..+.+..-...| ++=|-||+|...... . ...++ -+.+|+
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e-------~E~n~--~v~isa 323 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-E-------EEKNL--DVGISA 323 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-c-------cccCC--cccccc
Confidence 367899999999999987666555555555554322223 455677888754211 1 11122 467999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccc
Q 027292 162 LEATNVENAFMTVLTEIFNIVNKKNL 187 (225)
Q Consensus 162 ~~~~~v~~~f~~l~~~~~~~~~~~~~ 187 (225)
.+|.|++++.+.+-..+.....-.+.
T Consensus 324 ltgdgl~el~~a~~~kv~~~t~~~e~ 349 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVASETTVDED 349 (410)
T ss_pred ccCccHHHHHHHHHHHhhhhheeeeE
Confidence 99999999998887777666554433
No 323
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.95 E-value=7.2e-09 Score=82.62 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=55.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchh------
Q 027292 20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQER------ 78 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~------ 78 (225)
|+++|.|+||||||+|+|++........|.++.+.....+.+.+. ...+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998775554555454555544444332 12589999999432
Q ss_pred -hhhhhHhhhcCCCEEEEEEeCC
Q 027292 79 -YRAVTSAYYRGAVGAMLVYDIS 100 (225)
Q Consensus 79 -~~~~~~~~~~~~d~~i~v~d~~ 100 (225)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112233467899999999874
No 324
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.8e-08 Score=82.10 Aligned_cols=156 Identities=12% Similarity=0.225 Sum_probs=90.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC---------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLD---------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------- 78 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------- 78 (225)
-.++++++|+.|.|||||||.|+...+... ...+..+......+..++..+.++++||||...
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 369999999999999999999987644322 122334444444455567788899999999211
Q ss_pred ----------hhh-------hhHhhhc--CCCEEEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292 79 ----------YRA-------VTSAYYR--GAVGAMLVYDISRR--QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137 (225)
Q Consensus 79 ----------~~~-------~~~~~~~--~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (225)
|.. +.+..+. .+|++++.+..... ..++ ...+..+.. .+.+|-|+.|+|..-.
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D--i~~Mk~l~~----~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD--IEFMKKLSK----KVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh--HHHHHHHhc----cccccceeeccccCCH
Confidence 111 0111122 67899999987642 2222 122233322 5667888899997542
Q ss_pred CC--CCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 138 RA--VPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 138 ~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
.+ .....+.+.....++++|....... +..+....+.+..
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~ 215 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKS 215 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhh
Confidence 21 1123344555667777666554443 3344333444433
No 325
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=9e-09 Score=83.27 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=84.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeEEEEEEECCEE---------------------------
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKS--------------------------- 65 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------------------- 65 (225)
.+...-|+++|.-..||||||+.|+.++++.-. .+..+++++....+-+...
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 455678999999999999999999999887443 3444466665555422111
Q ss_pred ------------EEEEEEeCCCch-----------hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC
Q 027292 66 ------------VKAQIWDTAGQE-----------RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKN 122 (225)
Q Consensus 66 ------------~~~~l~Dt~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 122 (225)
-.+.++||||.- .|....+-|...+|.+|++||....+--++....+..++.+ .
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---E 211 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---E 211 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---c
Confidence 238899999932 24556666888999999999987655444444444444443 5
Q ss_pred CcEEEEEeCCCCCC
Q 027292 123 IVIILIGNKSDLEE 136 (225)
Q Consensus 123 ~piilv~nK~Dl~~ 136 (225)
-.+-||+||+|..+
T Consensus 212 dkiRVVLNKADqVd 225 (532)
T KOG1954|consen 212 DKIRVVLNKADQVD 225 (532)
T ss_pred ceeEEEeccccccC
Confidence 56888999999775
No 326
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.9e-08 Score=81.98 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=59.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC----------------EEEEEEEEeCCCch---
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH----------------KSVKAQIWDTAGQE--- 77 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~Dt~G~~--- 77 (225)
.+++.|+|-|+||||||+|+++.........|-.+++.......+.. ....+.++|++|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998876655555556665555544211 23468899999821
Q ss_pred ----hhhhhhHhhhcCCCEEEEEEeCC
Q 027292 78 ----RYRAVTSAYYRGAVGAMLVYDIS 100 (225)
Q Consensus 78 ----~~~~~~~~~~~~~d~~i~v~d~~ 100 (225)
-.......-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 12223344577899999999975
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.89 E-value=7.5e-09 Score=76.06 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=64.3
Q ss_pred hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027292 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLE 158 (225)
Q Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 158 (225)
++.+..+.+..+|++|+|+|+.++..... ..+...+. ..+.|+++|+||+|+.+... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 34567778889999999999987543222 12222222 23689999999999854211 11122233445677999
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q 027292 159 TSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 159 ~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
+||+++.|++++++.+.+.+-
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999998877653
No 328
>PRK12289 GTPase RsgA; Reviewed
Probab=98.89 E-value=6.8e-09 Score=85.71 Aligned_cols=91 Identities=19% Similarity=0.175 Sum_probs=67.5
Q ss_pred hhHhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec
Q 027292 82 VTSAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETS 160 (225)
Q Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (225)
+....+.++|.+++|+|+.++. ....+.+|+..+.. .+.|++||+||+|+..... .+........+++.++.+|
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEEE
Confidence 3444588999999999998765 44456777776533 3789999999999964211 1223334456788899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 027292 161 ALEATNVENAFMTVLTE 177 (225)
Q Consensus 161 a~~~~~v~~~f~~l~~~ 177 (225)
|.++.|++++++.+...
T Consensus 157 A~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 157 VETGIGLEALLEQLRNK 173 (352)
T ss_pred cCCCCCHHHHhhhhccc
Confidence 99999999999988654
No 329
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-07 Score=73.29 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=60.5
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-------AVTSAY 86 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~ 86 (225)
+..-.||+++|.|.+|||||+..+..-.........++.+.-+..+.+++ -.+++.|.||.-.=. ......
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEE
Confidence 44568999999999999999999987554443333334444444555544 457799999943211 122334
Q ss_pred hcCCCEEEEEEeCCChhh
Q 027292 87 YRGAVGAMLVYDISRRQS 104 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s 104 (225)
.+.+|.+++|.|+...+.
T Consensus 137 ArtaDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSED 154 (364)
T ss_pred eecccEEEEEecCCcchh
Confidence 567899999999987544
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.88 E-value=9.5e-09 Score=82.97 Aligned_cols=88 Identities=15% Similarity=0.082 Sum_probs=68.4
Q ss_pred HhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccC
Q 027292 84 SAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSAL 162 (225)
Q Consensus 84 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (225)
...+.++|++++|+|+.++. ++..+.+|+..+... +.|+++|+||+|+.+.. ............+.+++.+|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 34578999999999999887 778888888876543 78999999999997531 1122233445578889999999
Q ss_pred CCCCHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLT 176 (225)
Q Consensus 163 ~~~~v~~~f~~l~~ 176 (225)
++.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999987764
No 331
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.84 E-value=3.6e-08 Score=83.12 Aligned_cols=115 Identities=24% Similarity=0.281 Sum_probs=77.5
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh-------hHHhHHHHHHHHHhhcC----CCCcEEEEEeCC
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ-------SFDHIPRWLEELRSHAD----KNIVIILIGNKS 132 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~----~~~piilv~nK~ 132 (225)
....+.++|++|+...+.-|..++..++++|||+++++.+ ....+.+-+..+...+. .+.|+||++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 4456889999999988999999999999999999987522 22334333333333332 479999999999
Q ss_pred CCCC-----CC-------------CCCHHHHHHHHHH------------cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 133 DLEE-----QR-------------AVPTEDAKEFAQK------------EGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 133 Dl~~-----~~-------------~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
|+-. .. ....+.+..+... ..+.+..++|.+..++..+|+.+.+.+
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9721 00 1234444444332 122467889999999999999887643
No 332
>PRK12288 GTPase RsgA; Reviewed
Probab=98.83 E-value=2.6e-08 Score=82.23 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=67.4
Q ss_pred hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCeEEEeccCCCC
Q 027292 87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQKEGLFFLETSALEAT 165 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (225)
..++|.+++|++.....++..+..|+..... .++|++||+||+|+.+.... ......+.....+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888889999999876543 36899999999999753210 1122233345678899999999999
Q ss_pred CHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTE 177 (225)
Q Consensus 166 ~v~~~f~~l~~~ 177 (225)
|++++++++...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999988653
No 333
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.81 E-value=2.4e-08 Score=79.00 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=86.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCc-----------CCCCCCCcce---------------eeeEEEEEE---------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNE-----------FSLDSKATIG---------------VEFQTRTLV--------- 60 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~-----------~~~~~~~~~~---------------~~~~~~~~~--------- 60 (225)
+...|.|-|.||+|||||+..|...- ..++++.+.| ...+.....
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 45789999999999999999885411 1112221111 111111111
Q ss_pred ---------ECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeC
Q 027292 61 ---------IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNK 131 (225)
Q Consensus 61 ---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 131 (225)
++-.++.+.|++|.|--+-. -....-+|.+++|.-..-.+..+-++.- +.+.. =++|+||
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~G---imEia-----Di~vINK 198 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAG---IMEIA-----DIIVINK 198 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhh---hhhhh-----heeeEec
Confidence 11123668899998844322 2244568988888876655555544332 33332 2678899
Q ss_pred CCCCCCCCCCHHHHH---HHH------HHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 132 SDLEEQRAVPTEDAK---EFA------QKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 132 ~Dl~~~~~~~~~~~~---~~~------~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
.|...... ...+.+ .+. ..|..+++.+||.+|+|++++++.+.+-
T Consensus 199 aD~~~A~~-a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h 252 (323)
T COG1703 199 ADRKGAEK-AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDH 252 (323)
T ss_pred cChhhHHH-HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence 99543110 111111 111 1234669999999999999999876554
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=98.80 E-value=2e-08 Score=81.54 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=65.2
Q ss_pred hhcCCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292 86 YYRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA 164 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (225)
...++|++++|+|+.++..... +.+|+..+.. .+.|+++|+||+|+.+... ...........++.+++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4689999999999988765444 5778776654 3789999999999963221 122344455667888999999999
Q ss_pred CCHHHHHHHHHH
Q 027292 165 TNVENAFMTVLT 176 (225)
Q Consensus 165 ~~v~~~f~~l~~ 176 (225)
.|++++++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999987643
No 335
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=6.7e-09 Score=85.24 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=110.6
Q ss_pred CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcC--------cCCCC--------CCCcceeeeEEEEEEECCEEEEEEEEe
Q 027292 9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARN--------EFSLD--------SKATIGVEFQTRTLVIQHKSVKAQIWD 72 (225)
Q Consensus 9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D 72 (225)
.++......-+|.++.+..+||||--.+++.- ..... .....+++.+..-+.+++++.++.++|
T Consensus 29 ~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlid 108 (753)
T KOG0464|consen 29 IINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLID 108 (753)
T ss_pred CCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeec
Confidence 44445566789999999999999999998751 11111 123346788888888999999999999
Q ss_pred CCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc
Q 027292 73 TAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE 152 (225)
Q Consensus 73 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 152 (225)
|||+-.|+-..+..++.-|+++.|||.+-.-..+.+..|.+. ...++|...++||+|...... ...+.....++
T Consensus 109 tpghvdf~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~anf--e~avdsi~ekl 182 (753)
T KOG0464|consen 109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAANF--ENAVDSIEEKL 182 (753)
T ss_pred CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhhhh--hhHHHHHHHHh
Confidence 999999999999999999999999999976666667777443 345899999999999854221 22344455556
Q ss_pred CCe--EEEeccCCCCCHH
Q 027292 153 GLF--FLETSALEATNVE 168 (225)
Q Consensus 153 ~~~--~~~~Sa~~~~~v~ 168 (225)
+++ ...+-.-+..++.
T Consensus 183 ~ak~l~l~lpi~eak~fn 200 (753)
T KOG0464|consen 183 GAKALKLQLPIGEAKGFN 200 (753)
T ss_pred CCceEEEEeccccccccc
Confidence 655 2333334444443
No 336
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.77 E-value=5.1e-08 Score=81.18 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=71.1
Q ss_pred CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH----HHHH
Q 027292 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK----EFAQ 150 (225)
Q Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~ 150 (225)
.++.|..+...+.+.++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+... ....+.+. ++++
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAK 121 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHH
Confidence 36678888888889999999999987643 234455554443 6799999999999753 33334444 3456
Q ss_pred HcCC---eEEEeccCCCCCHHHHHHHHHHH
Q 027292 151 KEGL---FFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 151 ~~~~---~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
..++ .++.+||+++.|++++|+.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6676 38999999999999999988653
No 337
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.76 E-value=8.8e-09 Score=80.22 Aligned_cols=151 Identities=19% Similarity=0.152 Sum_probs=83.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcC-----------CCCCCCc---------------ceeeeEEEEEEECC------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEF-----------SLDSKAT---------------IGVEFQTRTLVIQH------ 63 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~------ 63 (225)
+.+.|.|-|+||+|||||++.|...-. .++++.+ .....+....--.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 568999999999999999999864100 0111100 01122222221111
Q ss_pred ------------EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeC
Q 027292 64 ------------KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNK 131 (225)
Q Consensus 64 ------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 131 (225)
.++.+.|++|.|--+-. -....-+|.+++|....-.+..+.++.-+.++ . =++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---a-----Di~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI---A-----DIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh---c-----cEEEEeC
Confidence 12668899998743222 23456789999999988766665543333332 2 2678899
Q ss_pred CCCCCCCCCCHHHHHHHHH-------HcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 132 SDLEEQRAVPTEDAKEFAQ-------KEGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 132 ~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
+|...... ...+.+.... .|..+++.+||.++.|++++++.|.+.-
T Consensus 177 aD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 177 ADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 99643111 1112222221 1346799999999999999998776643
No 338
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=4.6e-08 Score=78.42 Aligned_cols=150 Identities=18% Similarity=0.171 Sum_probs=101.5
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhc----------CcCC----CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFAR----------NEFS----LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (225)
..+-+||.-+|+...|||||-.++.. ..|. .......+++.....+.++.....+--.|+||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 44568999999999999999888754 1111 011233457777777777777788888999999999
Q ss_pred hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC---CHHHHHHHHHHcCC--
Q 027292 80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV---PTEDAKEFAQKEGL-- 154 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~-- 154 (225)
-........+.|++|+|++++|..--+ .++-+...++. . -..+++++||.|+.++.+. .+.+++++...+++
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQV-G-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQV-G-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHHc-C-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 888877788899999999999843211 11112222222 2 2348888999999854432 23457788888774
Q ss_pred ---eEEEec---cCCCCC
Q 027292 155 ---FFLETS---ALEATN 166 (225)
Q Consensus 155 ---~~~~~S---a~~~~~ 166 (225)
|++.-| |.++.+
T Consensus 208 d~~PvI~GSAL~ALeg~~ 225 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQ 225 (449)
T ss_pred CCCCeeecchhhhhcCCC
Confidence 466655 455543
No 339
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.1e-07 Score=73.02 Aligned_cols=158 Identities=19% Similarity=0.226 Sum_probs=93.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEE-----EECCEEEEEEEEeCCCchhhhh---hhHhhhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTL-----VIQHKSVKAQIWDTAGQERYRA---VTSAYYR 88 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~ 88 (225)
..+|+++|...+||||+-...++.-.+.+. -+...+. .+.+.-+.+.+||.||+-.+-. -.+..++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneT------lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~ 100 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNET------LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFR 100 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCce------eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHh
Confidence 477999999999999987766654332221 1111111 1223557799999999765422 2456788
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCCCCCHHHHH-------HHHHHc-----CC
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHA--DKNIVIILIGNKSDLEEQRAVPTEDAK-------EFAQKE-----GL 154 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~-------~~~~~~-----~~ 154 (225)
.+.++|||+|+.+. -.+.+.++...+.... +++..+-+.++|.|-..+.. ..+..+ .-.... .+
T Consensus 101 ~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~-kietqrdI~qr~~d~l~d~gle~v~v 178 (347)
T KOG3887|consen 101 GVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF-KIETQRDIHQRTNDELADAGLEKVQV 178 (347)
T ss_pred ccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh-hhhhHHHHHHHhhHHHHhhhhccceE
Confidence 99999999998753 2223333333332222 35777888999999743211 111111 111122 23
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 155 FFLETSALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 155 ~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
.|+-+|..+. .+-++|..+++.+.-...
T Consensus 179 sf~LTSIyDH-SIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 179 SFYLTSIYDH-SIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred EEEEeeecch-HHHHHHHHHHHHHhhhch
Confidence 4666776654 478888888887754443
No 340
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.72 E-value=3.2e-07 Score=74.87 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=96.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC--------------CcceeeeEEEEEEECCE--------------
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK--------------ATIGVEFQTRTLVIQHK-------------- 64 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-------------- 64 (225)
..+..+.|.+.|+...|||||.-.|..+....... ...+.+.....+-+++.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34567899999999999999998877654332211 11122223233322221
Q ss_pred -------EEEEEEEeCCCchhhhhhhHh--hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 65 -------SVKAQIWDTAGQERYRAVTSA--YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 65 -------~~~~~l~Dt~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
+.-+.|.||.|++.|..+... +-.+.|..++++.+++..+.-. .+.+--....+.|++++++|+|+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t----kEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT----KEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh----hHhhhhhhhhcCCEEEEEEecccC
Confidence 134789999999998765444 4457899999999997543211 111111222489999999999996
Q ss_pred CCCCCC--HHHHH----------------------HHHHHc-C--CeEEEeccCCCCCHHHHHHHH
Q 027292 136 EQRAVP--TEDAK----------------------EFAQKE-G--LFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 136 ~~~~~~--~~~~~----------------------~~~~~~-~--~~~~~~Sa~~~~~v~~~f~~l 174 (225)
++.... .+++. ..+.+. + +|+|.+|+.+|+|.+-+.+.+
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 432110 11111 111112 2 579999999999987655433
No 341
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.71 E-value=3.9e-08 Score=71.04 Aligned_cols=54 Identities=22% Similarity=0.288 Sum_probs=38.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (225)
+++|+|.+|+|||||+|++.+........ ..+.+.....+..+. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876543222 222333344444433 5789999995
No 342
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.69 E-value=2.4e-07 Score=87.82 Aligned_cols=115 Identities=21% Similarity=0.251 Sum_probs=73.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC------CcceeeeEEEEEEECCEEEEEEEEeCCCch--------hhhhh
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSK------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQE--------RYRAV 82 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~ 82 (225)
.+=.+|+|++|+||||||.+. +..++.... ...+.+..+.+. + .-...++||+|.- .....
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-f---~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-F---TDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-e---cCCEEEEcCCCccccCCCcccccHHH
Confidence 355799999999999999977 444433211 111112222222 1 1245589999921 12233
Q ss_pred hHhhh---------cCCCEEEEEEeCCChh---------hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 83 TSAYY---------RGAVGAMLVYDISRRQ---------SFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 83 ~~~~~---------~~~d~~i~v~d~~~~~---------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
|..++ ...|++|+++|+.+.- ....++..+.++.+......||.|++||+|+..
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 44443 3579999999987621 123455566777777788999999999999864
No 343
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.67 E-value=4.5e-08 Score=76.51 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=93.6
Q ss_pred CCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC-cceeeeEEEEEEECCEEEEEEEEeCCC---------
Q 027292 6 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKA-TIGVEFQTRTLVIQHKSVKAQIWDTAG--------- 75 (225)
Q Consensus 6 ~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------- 75 (225)
+.....-+.+..++++++|.+++|||+|++-++.......... ..+.+. .+..-+.+-.+.+.|.||
T Consensus 125 s~~~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq---~in~f~v~~~~~~vDlPG~~~a~y~~~ 201 (320)
T KOG2486|consen 125 SVTAEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ---AINHFHVGKSWYEVDLPGYGRAGYGFE 201 (320)
T ss_pred cceeccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccce---eeeeeeccceEEEEecCCcccccCCcc
Confidence 4445556678889999999999999999999987543222211 222222 222223444677889999
Q ss_pred -chhhhhhhHhhhcCCC---EEEEEEeCCCh-hhHHh-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--C--CHHHH
Q 027292 76 -QERYRAVTSAYYRGAV---GAMLVYDISRR-QSFDH-IPRWLEELRSHADKNIVIILIGNKSDLEEQRA--V--PTEDA 145 (225)
Q Consensus 76 -~~~~~~~~~~~~~~~d---~~i~v~d~~~~-~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~--~~~~~ 145 (225)
...+..+...|+..-+ -+++++|++-+ ...+. ...|+.+ .++|..+|.||+|....-. - ....+
T Consensus 202 ~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i 275 (320)
T KOG2486|consen 202 LPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNI 275 (320)
T ss_pred CcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccc
Confidence 2234444555544332 34445555532 22222 2334332 3899999999999853111 0 01111
Q ss_pred HH-------HHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 146 KE-------FAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 146 ~~-------~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
.. .......+++.+|+.++.|.++++-.+.+
T Consensus 276 ~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 276 KINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 11 11122345778999999999988765543
No 344
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=9e-08 Score=83.75 Aligned_cols=118 Identities=16% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcC------------C--CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEF------------S--LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (225)
.....-+|+++.+...|||||+..|....- . .....+.+++.....+..-..++.+.++|+|||-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 345677899999999999999998876321 1 12234445666666666667888999999999999
Q ss_pred hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027292 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134 (225)
Q Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (225)
|.+......+-+|++++++|+...-..+......+.+.+ +...++|+||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----GLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----cCceEEEEehhhh
Confidence 999999999999999999999874433332222222222 4557888999994
No 345
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9.1e-07 Score=76.90 Aligned_cols=145 Identities=15% Similarity=0.192 Sum_probs=81.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeE---------------------------------------
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQ--------------------------------------- 55 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 55 (225)
+...||+|.|..++||||++|+++....-++....++..+.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 35689999999999999999999774443332211110000
Q ss_pred -----EEEEEECC-E---EEEEEEEeCCCch---hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 027292 56 -----TRTLVIQH-K---SVKAQIWDTAGQE---RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI 123 (225)
Q Consensus 56 -----~~~~~~~~-~---~~~~~l~Dt~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 123 (225)
.+.++.++ . .-.+.++|.||-+ ...+-.-.+...+|++|||.++.+..+... ..++..+ ...+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~v---s~~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKV---SEEKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHh---hccCC
Confidence 00001000 0 0136788999943 344445556779999999999987655443 2233332 22234
Q ss_pred cEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--------eEEEeccCC
Q 027292 124 VIILIGNKSDLEEQRAVPTEDAKEFAQKEGL--------FFLETSALE 163 (225)
Q Consensus 124 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~ 163 (225)
.+.++.||.|.....+--.+.+.+-..++++ .+|.+|+++
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 4777778999865322222233332223322 277888664
No 346
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.65 E-value=2.1e-06 Score=73.10 Aligned_cols=143 Identities=17% Similarity=0.229 Sum_probs=88.0
Q ss_pred CCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-C-----------------------------------
Q 027292 5 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-A----------------------------------- 48 (225)
Q Consensus 5 ~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~----------------------------------- 48 (225)
++|...=++.++.++|+|||+..+||||.+..+......+... .
T Consensus 296 s~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~D 375 (980)
T KOG0447|consen 296 SDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEED 375 (980)
T ss_pred hcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhH
Confidence 3444555678899999999999999999999886422111110 0
Q ss_pred ------------------cceeeeEEEEEEECC-EEEEEEEEeCCCc-------------hhhhhhhHhhhcCCCEEEEE
Q 027292 49 ------------------TIGVEFQTRTLVIQH-KSVKAQIWDTAGQ-------------ERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 49 ------------------~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v 96 (225)
..+.........+.+ ......+.|.||. +....+..++..+.+++|+|
T Consensus 376 Lq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILC 455 (980)
T KOG0447|consen 376 LAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILC 455 (980)
T ss_pred HHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEE
Confidence 001111111111222 2235778899992 23345677889999999999
Q ss_pred EeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 027292 97 YDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ 150 (225)
Q Consensus 97 ~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 150 (225)
+---..+ .-..+..+ +.+.-+.+...|+|++|.|+++....++..+++...
T Consensus 456 IQDGSVDAERSnVTDL---Vsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 456 IQDGSVDAERSIVTDL---VSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred eccCCcchhhhhHHHH---HHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 9532211 11122222 223334578899999999999877778888877654
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.63 E-value=1.1e-07 Score=69.85 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=37.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 75 (225)
.++|+++|.+|+|||||+|+|.+......... .+++.....+... ..+.++||||
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~~~~---~~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYITLM---KRIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEEEcC---CCEEEEECcC
Confidence 57899999999999999999998654333322 2233333333322 2367999999
No 348
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.63 E-value=1.1e-07 Score=71.01 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=39.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 75 (225)
..++++|+|.+++|||||+|+|.+....... +..+++....++..+ ..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeC---CCEEEEECcC
Confidence 3589999999999999999999986553222 222344444444432 2578999999
No 349
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4e-08 Score=77.74 Aligned_cols=165 Identities=17% Similarity=0.151 Sum_probs=102.2
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC---cCCCCCCCcceeee--EEEEEE----------------------------
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN---EFSLDSKATIGVEF--QTRTLV---------------------------- 60 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~---~~~~~~~~~~~~~~--~~~~~~---------------------------- 60 (225)
++-+++|.-+|+...||||++.++.+- .|..+-....++.. .-..+.
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 456899999999999999999988651 11111111101100 000000
Q ss_pred --ECC---EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 61 --IQH---KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 61 --~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
..+ -...+.|.|+||++..-+.......-.|++++++..+..-...+..+-+..+.-.. =..++++-||+|+.
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli 192 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLI 192 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhh
Confidence 000 11347789999999877766666667799999998886222222222222222211 13478889999997
Q ss_pred CCCCCC--HHHHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 136 EQRAVP--TEDAKEFAQKE---GLFFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 136 ~~~~~~--~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
.+.+.. .+.+++|.+.. +++++++||.-+.+++.+.++|.+.+--
T Consensus 193 ~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 193 KESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred hHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 643322 33455565543 5689999999999999999999988743
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.58 E-value=1.7e-07 Score=69.90 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=40.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (225)
+..++++++|.+|+|||||++++.+..+... ....+++.....+..+ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457999999999999999999998765322 2222344444444443 45789999994
No 351
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=4.2e-07 Score=73.96 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=94.3
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC----------------CCCcceeeeEEE-------EEEE-------
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLD----------------SKATIGVEFQTR-------TLVI------- 61 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~----------------~~~~~~~~~~~~-------~~~~------- 61 (225)
...-..+|+.|+|...+|||||+-.|..++.... ...+..+..... .+.+
T Consensus 162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE 241 (591)
T KOG1143|consen 162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE 241 (591)
T ss_pred cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence 3344579999999999999999977754332211 111111111111 1111
Q ss_pred ---CCEEEEEEEEeCCCchhhhhhhHhhhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 62 ---QHKSVKAQIWDTAGQERYRAVTSAYYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 62 ---~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
+...--+.|+|.+|+.+|.......+. -.|.+++|++++..-.+.. ++-+..+.. .+.|+.++++|+|+.+
T Consensus 242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVD 317 (591)
T ss_pred HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeecccc
Confidence 111234889999999999877665554 4588999999887543322 111222222 2899999999999965
Q ss_pred CCC------------------------CCHHHHHHHHHHc----CCeEEEeccCCCCCHHHHHH
Q 027292 137 QRA------------------------VPTEDAKEFAQKE----GLFFLETSALEATNVENAFM 172 (225)
Q Consensus 137 ~~~------------------------~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~f~ 172 (225)
... -..+++-..+++. =+++|-+|..+|++++-+..
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 311 1222233333332 24689999999999876543
No 352
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.53 E-value=3.9e-07 Score=66.99 Aligned_cols=90 Identities=12% Similarity=0.006 Sum_probs=56.3
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT 165 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (225)
.+..+|++++|+|+.++.... ...+...+... ..+.|+++|+||+|+.+... .......+...+....+.+||+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccccc
Confidence 467899999999998763211 12222223222 33589999999999964211 1111222222222335789999999
Q ss_pred CHHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTEI 178 (225)
Q Consensus 166 ~v~~~f~~l~~~~ 178 (225)
|++++++.+.+..
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999886643
No 353
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.51 E-value=2.2e-07 Score=70.52 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=37.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCC-------CCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSL-------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 75 (225)
.+++++|.+|+|||||+|.|.+..... ......+++.....+.... .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 589999999999999999999754311 1122223445555554433 478999999
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.51 E-value=4.2e-07 Score=66.73 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=38.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 75 (225)
...+++++|.+++|||||++++.+... ....++.+.+.....+..+ ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~---~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT---SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence 457899999999999999999987543 2233343444333222222 2688999999
No 355
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.47 E-value=4.9e-06 Score=64.82 Aligned_cols=88 Identities=16% Similarity=0.035 Sum_probs=54.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC--cCCCCCC---CcceeeeEEEEEEECCEEEEEEEEeCCCchhh------hhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN--EFSLDSK---ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY------RAV 82 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~ 82 (225)
..+..-|.|+|++++|||+|+|.|++. .+..... .|.++-.....+. .+....+.++||+|.... ...
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhh
Confidence 345678999999999999999999998 5543332 1111111111111 124578999999995432 112
Q ss_pred hHhhhc--CCCEEEEEEeCCCh
Q 027292 83 TSAYYR--GAVGAMLVYDISRR 102 (225)
Q Consensus 83 ~~~~~~--~~d~~i~v~d~~~~ 102 (225)
....+. -+|++|+..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 222333 37888888887653
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.46 E-value=9.5e-07 Score=64.82 Aligned_cols=85 Identities=15% Similarity=0.033 Sum_probs=55.1
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA 170 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 170 (225)
|++++|+|+.++.+... .|+.. ......+.|+++|+||+|+..... ..+....+....+..++.+||.++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~-~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEV-LRKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHH-HHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999987654432 23331 112223789999999999964211 011112232333556899999999999999
Q ss_pred HHHHHHHHH
Q 027292 171 FMTVLTEIF 179 (225)
Q Consensus 171 f~~l~~~~~ 179 (225)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 998877643
No 357
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.46 E-value=8.7e-07 Score=73.25 Aligned_cols=83 Identities=16% Similarity=0.016 Sum_probs=58.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchh---
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQER--- 78 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~--- 78 (225)
+++.|+|.|++|||||++.|..... .....|..+.+.....+.+.+. ...+.+.|+||.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999876 5444444444555444444332 13578999999432
Q ss_pred ----hhhhhHhhhcCCCEEEEEEeCC
Q 027292 79 ----YRAVTSAYYRGAVGAMLVYDIS 100 (225)
Q Consensus 79 ----~~~~~~~~~~~~d~~i~v~d~~ 100 (225)
........++.+|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1223444678999999999985
No 358
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.46 E-value=3.3e-05 Score=56.02 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=82.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCC-Cch----------------
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTA-GQE---------------- 77 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~---------------- 77 (225)
...+||+|-|+||+|||||+.++...--...+. . --+...++..++...-|.+.|+. |..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k-v--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYK-V--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCce-e--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 457999999999999999999987633222221 1 22344445556677778888876 311
Q ss_pred -----hhh----hhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH
Q 027292 78 -----RYR----AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF 148 (225)
Q Consensus 78 -----~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 148 (225)
.+. ......+..||++| +|--.+..+ ....+...+.+....+.|++.++++-+.. -.++++
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr~-------P~v~~i 149 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSRH-------PLVQRI 149 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccCC-------hHHHHh
Confidence 111 12233345567554 453332221 12455666666666688988888877631 123333
Q ss_pred HHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 149 AQKEGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 149 ~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
-...++.+| .+.+|-+.+++.++..+
T Consensus 150 k~~~~v~v~----lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 150 KKLGGVYVF----LTPENRNRILNEILSVL 175 (179)
T ss_pred hhcCCEEEE----EccchhhHHHHHHHHHh
Confidence 222333343 34445556666665543
No 359
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.45 E-value=6.3e-07 Score=72.07 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=39.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (225)
..++++|+|.+|+|||||+|+|.+........ ..+++.....+.... .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC---CEEEEECCCc
Confidence 46899999999999999999999865433322 223344444444422 4789999996
No 360
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.45 E-value=8.4e-07 Score=71.74 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=41.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (225)
...++|+|+|.+|||||||+|+|.+....... ...+++.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 35689999999999999999999987653222 2223444444444332 47899999953
No 361
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.43 E-value=5.1e-07 Score=74.01 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=43.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (225)
..++++|+|.|+||||||||+|.+....... +..|++....++..+.. +.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCc
Confidence 3578999999999999999999997663333 22266777777765543 789999994
No 362
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=3.3e-06 Score=72.27 Aligned_cols=138 Identities=15% Similarity=0.174 Sum_probs=82.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC-CCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLD-SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
.++.+-+.|+|++|+||||||+.|...-.... ......++. ..+....++|+++|.+ ... .....+-+|+
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv------vsgK~RRiTflEcp~D--l~~-miDvaKIaDL 136 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV------VSGKTRRITFLECPSD--LHQ-MIDVAKIADL 136 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE------eecceeEEEEEeChHH--HHH-HHhHHHhhhe
Confidence 34567788999999999999998865311100 111111111 3467788999999942 222 3345667899
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCCCHHHHH-----HHHHH-cCCeEEEeccCCC
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAVPTEDAK-----EFAQK-EGLFFLETSALEA 164 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~-----~~~~~-~~~~~~~~Sa~~~ 164 (225)
+++++|.+-.-.++.+ ++++.+..+ +.| ++-|++..|+........+.-. .|..- .|+++|.+|-..+
T Consensus 137 VlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 137 VLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred eEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 9999999854333322 334544444 455 6778899999764332222211 12221 3678888886643
No 363
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.40 E-value=4e-06 Score=65.24 Aligned_cols=120 Identities=20% Similarity=0.206 Sum_probs=77.7
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh-------hhHHhHHHHHHHHHhhc----CCCCcEEEEEeCC
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR-------QSFDHIPRWLEELRSHA----DKNIVIILIGNKS 132 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~----~~~~piilv~nK~ 132 (225)
..+.++++|.+|+...+.-|...+....++|||++.+.. .+..++.+-+..++..- .....+|+++||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 345699999999999898999999999999999998752 12333333232222211 1246799999999
Q ss_pred CCCC----------------------------CCCCCHH--HHHHHHHH-------------cCCeEEEeccCCCCCHHH
Q 027292 133 DLEE----------------------------QRAVPTE--DAKEFAQK-------------EGLFFLETSALEATNVEN 169 (225)
Q Consensus 133 Dl~~----------------------------~~~~~~~--~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~ 169 (225)
|+.. +...++. .++.+.+. .-+.+..+.|.+-+++..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 9731 0000111 11112111 114466788999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027292 170 AFMTVLTEIFNIVN 183 (225)
Q Consensus 170 ~f~~l~~~~~~~~~ 183 (225)
+|+...+.+.+.+-
T Consensus 360 VFnDcrdiIqr~hl 373 (379)
T KOG0099|consen 360 VFNDCRDIIQRMHL 373 (379)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888776654
No 364
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.40 E-value=3.7e-07 Score=66.84 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=32.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCC------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSL------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (225)
-.++|+|++|||||||+|.|....... ......-++.....+..+.. ..++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 468999999999999999998853211 11111112222333333222 368999996543
No 365
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=7.9e-07 Score=76.32 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=87.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcC-----CCCC-----------CCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEF-----SLDS-----------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (225)
.+..-+|.+.-+-.+||||+-++++...- .... ....+++....-..+.+.++.+.++|||||-
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 44667899999999999999998865211 0000 1122344444445566778999999999999
Q ss_pred hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
.|.-..+..++.-|++|+|++....-.-+....|.+. ..+ ++|.|.++||+|...
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~ry---~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KRY---NVPRICFINKMDRMG 170 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hhc---CCCeEEEEehhhhcC
Confidence 9998889999999999999998875554555566443 333 899999999999865
No 366
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.37 E-value=1.6e-06 Score=62.61 Aligned_cols=76 Identities=22% Similarity=0.252 Sum_probs=51.6
Q ss_pred HhhhcCCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292 84 SAYYRGAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (225)
...+..+|++++|+|+.++.+.. .+..|+... . .+.|+++|+||+|+.++. ......+.....+..++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~--~~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEE--QRKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHH--HHHHHHHHHHhcCCeEEEEEe
Confidence 34678899999999998865533 334444332 2 368999999999986422 122334455556678999999
Q ss_pred CCCC
Q 027292 162 LEAT 165 (225)
Q Consensus 162 ~~~~ 165 (225)
.++.
T Consensus 80 ~~~~ 83 (141)
T cd01857 80 LKEN 83 (141)
T ss_pred cCCC
Confidence 8765
No 367
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=2.3e-06 Score=79.74 Aligned_cols=163 Identities=21% Similarity=0.185 Sum_probs=87.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc-ceeeeEEEEEEEC-CEEEEEEEEeCCCch--------hhhhhhHhh-
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKAT-IGVEFQTRTLVIQ-HKSVKAQIWDTAGQE--------RYRAVTSAY- 86 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~--------~~~~~~~~~- 86 (225)
+=.+|+|++|+||||++... +..|+....-. .+.... .+..++ +..-...++||.|.. .-...|..+
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~-gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGP-GTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCC-CCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 34689999999999998754 33332221100 000000 011111 233356789999821 223344433
Q ss_pred --------hcCCCEEEEEEeCCChhh---------HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH--HHH
Q 027292 87 --------YRGAVGAMLVYDISRRQS---------FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED--AKE 147 (225)
Q Consensus 87 --------~~~~d~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~--~~~ 147 (225)
.+..|++|+.+|+.+.-+ ...++.-+.++.+......|++|++||.|+......-... -.+
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~~ 283 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKEE 283 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCHHH
Confidence 346799999999876211 1123334566777777789999999999997522110111 112
Q ss_pred HHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 148 FAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 148 ~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
..+-+|+ -|...+....+....++.-.+.+..+.+
T Consensus 284 r~qvwG~-tf~~~~~~~~~~~~~~~~e~~~L~~rl~ 318 (1188)
T COG3523 284 REQVWGV-TFPLDARRNANLAAELEQEFRLLLDRLN 318 (1188)
T ss_pred Hhhhcee-ccccccccccchHHHHHHHHHHHHHHHH
Confidence 2222443 3666666664555555444444444433
No 368
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.36 E-value=6.3e-07 Score=73.26 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=78.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-------C--------------CcceeeeEEEEEE-------------EC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDS-------K--------------ATIGVEFQTRTLV-------------IQ 62 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-------~--------------~~~~~~~~~~~~~-------------~~ 62 (225)
.--|+|+|++|+||||++..|...-..... + ...+..+...... ..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999988652110000 0 0001111111000 01
Q ss_pred CEEEEEEEEeCCCchhhhhh----hHhh--------hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEe
Q 027292 63 HKSVKAQIWDTAGQERYRAV----TSAY--------YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130 (225)
Q Consensus 63 ~~~~~~~l~Dt~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 130 (225)
...+.+.++||||....... ...+ -...+..++|+|++... +.+.. ...+.+.. -+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~---~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV---GLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC---CCCEEEEE
Confidence 23467999999996432211 1111 12467889999998532 22222 22222221 23457789
Q ss_pred CCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 131 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
|.|.... .-.+..++...+.|+..++ +|++++++-.
T Consensus 268 KlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 268 KLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 9996532 2334555666799988886 6777776544
No 369
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=4.4e-06 Score=69.77 Aligned_cols=95 Identities=20% Similarity=0.295 Sum_probs=63.1
Q ss_pred chhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH----HHH
Q 027292 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF----AQK 151 (225)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~ 151 (225)
.+.|...........+.+++|+|+.+.. ..|...+.+... +.|+++|+||+|+... ....+.+..+ ++.
T Consensus 56 ~~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 56 DDDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHh
Confidence 3455554444433344899999998743 234445554443 6789999999999752 3333344333 555
Q ss_pred cCC---eEEEeccCCCCCHHHHHHHHHHH
Q 027292 152 EGL---FFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 152 ~~~---~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
.++ .++.+||+++.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 565 48999999999999999988653
No 370
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.35 E-value=3.4e-06 Score=67.56 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=57.0
Q ss_pred EEEEEEEEeCCCchhhhhhhH----h---hh-----cCCCEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCcEEEEEe
Q 027292 64 KSVKAQIWDTAGQERYRAVTS----A---YY-----RGAVGAMLVYDISRR-QSFDHIPRWLEELRSHADKNIVIILIGN 130 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~----~---~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~n 130 (225)
.++.+.++||||......... . .. ...|..++|+|+... +.+.. ...+.+..+ +.-+|+|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~----~~~f~~~~~---~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQ----AKVFNEAVG---LTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHH----HHHHHhhCC---CCEEEEE
Confidence 346789999999654332211 1 11 237999999999743 22322 233332221 3457789
Q ss_pred CCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 131 KSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 131 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
|.|.... .-.+..+....+.|+..++ +|++++++-..
T Consensus 226 KlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 226 KLDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred ccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 9997642 2234455556688877776 66667765443
No 371
>PRK14974 cell division protein FtsY; Provisional
Probab=98.35 E-value=7e-07 Score=73.32 Aligned_cols=95 Identities=17% Similarity=0.083 Sum_probs=55.4
Q ss_pred EEEEEEeCCCchhhhh----hhHhh--hcCCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292 66 VKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDISRRQS-FDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (225)
+.+.++||+|...... ....+ .-..|.+++|+|+..... .+.+ ..+.... +. --+|+||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~--~~-~giIlTKlD~~~~- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV--GI-DGVILTKVDADAK- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC--CC-CEEEEeeecCCCC-
Confidence 5689999999653221 11222 225788999999875432 2222 2222221 22 3567799998642
Q ss_pred CCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 139 AVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
.-.+..++...+.|+..++ +|.+++++..+
T Consensus 295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ---ccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 1234444555788877775 68888776543
No 372
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.34 E-value=1.3e-06 Score=64.03 Aligned_cols=56 Identities=20% Similarity=0.276 Sum_probs=37.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 75 (225)
....+++++|.+|+|||||+|.+.+... .....+. ++.....+... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~--~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPG--TTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCC--cccceEEEEec---CCEEEEECCC
Confidence 3468899999999999999999998653 2222233 22222333332 3588999999
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=98.34 E-value=1.2e-06 Score=72.55 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=35.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCC------CcceeeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027292 20 VVLIGDSAVGKSQILARFARNEFSLDSK------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR 80 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 80 (225)
++|+|.+|||||||||+|++........ ...-++.....+.+.+. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 7899999999999999999754322111 11112333333444322 2489999965443
No 374
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.33 E-value=1.6e-06 Score=69.70 Aligned_cols=85 Identities=13% Similarity=0.131 Sum_probs=62.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC---------------EEEEEEEEeCCCchh--
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH---------------KSVKAQIWDTAGQER-- 78 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~Dt~G~~~-- 78 (225)
+.++|.|||.|++|||||+|.|..........|-.+++.....+.+.. ....+.++|++|--.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 568999999999999999999999888877777777777766655322 234688999998221
Q ss_pred -----hhhhhHhhhcCCCEEEEEEeCC
Q 027292 79 -----YRAVTSAYYRGAVGAMLVYDIS 100 (225)
Q Consensus 79 -----~~~~~~~~~~~~d~~i~v~d~~ 100 (225)
........++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 2222334567889999988864
No 375
>PRK01889 GTPase RsgA; Reviewed
Probab=98.32 E-value=2.4e-06 Score=71.12 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=59.6
Q ss_pred hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEeccCCCC
Q 027292 87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-KEGLFFLETSALEAT 165 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 165 (225)
..++|.+++|+++...-....+.+++..+... +.+.+||+||+|+.+. ..+....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~---~~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCED---AEEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCC---HHHHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997544555666766666554 6778889999999753 1112222222 346789999999999
Q ss_pred CHHHHHHHHH
Q 027292 166 NVENAFMTVL 175 (225)
Q Consensus 166 ~v~~~f~~l~ 175 (225)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888774
No 376
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.31 E-value=3.1e-06 Score=63.13 Aligned_cols=98 Identities=15% Similarity=0.040 Sum_probs=62.4
Q ss_pred CCCchh-hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027292 73 TAGQER-YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK 151 (225)
Q Consensus 73 t~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 151 (225)
.||+.. .-......+..+|++++|+|+.++...... .+.. .. .+.|+++|+||+|+.+... .....+..+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----IL-GNKPRIIVLNKADLADPKK--TKKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----Hh-cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence 355432 233445678899999999999865432221 1222 11 2578999999999964211 1112222233
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 152 EGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 152 ~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
.+..++.+|++++.|++++.+.+...+
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 345689999999999999999888765
No 377
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.29 E-value=1.5e-05 Score=67.31 Aligned_cols=133 Identities=14% Similarity=0.037 Sum_probs=69.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc------CcCC---C-CC-----------CCcceeeeEEEEEEEC-------------
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR------NEFS---L-DS-----------KATIGVEFQTRTLVIQ------------- 62 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~------~~~~---~-~~-----------~~~~~~~~~~~~~~~~------------- 62 (225)
.--|+++|.+|+||||++..|.. .... . .+ ....+..+.......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45789999999999999998863 1100 0 00 0001111111000000
Q ss_pred CEEEEEEEEeCCCchhhhhh----hHhh--hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 63 HKSVKAQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 63 ~~~~~~~l~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
...+.+.|+||+|....... ...+ ....|-++||+|+.-..... .....+.+. -.+.-+|+||.|...
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCC
Confidence 12568899999995433221 1111 22568899999987543221 122333332 124567789999753
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEe
Q 027292 137 QRAVPTEDAKEFAQKEGLFFLET 159 (225)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~ 159 (225)
. .-.+..+....+.|+..+
T Consensus 254 r----gG~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 254 K----GGGALSAVAATKSPIIFI 272 (429)
T ss_pred C----ccHHhhhHHHHCCCeEEE
Confidence 1 122334444556664444
No 378
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.27 E-value=5.5e-06 Score=66.63 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=64.3
Q ss_pred CCCchh-hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027292 73 TAGQER-YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK 151 (225)
Q Consensus 73 t~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 151 (225)
.|||-. ........+..+|++++|+|+..+.+... .++.... . +.|+++|+||+|+.+... .....+....
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~-~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---G-NKPRLIVLNKADLADPAV--TKQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---C-CCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence 366542 22345567889999999999986544322 1111111 2 679999999999964211 1112222233
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 152 EGLFFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 152 ~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
.+..++.+|++++.|+.++.+.+.+.+-+
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 45678999999999999999888776644
No 379
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=1.4e-05 Score=61.95 Aligned_cols=159 Identities=21% Similarity=0.332 Sum_probs=98.1
Q ss_pred eeeEEEEcCCCC--CHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC--EEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 17 VFKVVLIGDSAV--GKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH--KSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 17 ~~~I~vlG~~g~--GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
.+-++|+|.+|+ ||-+|+.+|....+.........+.+...++.... .++.+.+.-.. ++.+.. .........+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lp-n~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLP-NAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccC-Ccccccceee
Confidence 356889999999 99999999999888777666655666555543221 22233332111 222221 1223344578
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC---------------------------CCC------
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE---------------------------QRA------ 139 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---------------------------~~~------ 139 (225)
+++|||++....+..+..|+...... ..+ -++.++||.|... +..
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdin-sfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg 159 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDIN-SFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG 159 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccc-cch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence 99999999999999999997643211 111 2455789988631 000
Q ss_pred -----------CCHHHHHHHHHHcCCeEEEeccCC------------CCCHHHHHHHHHHHHH
Q 027292 140 -----------VPTEDAKEFAQKEGLFFLETSALE------------ATNVENAFMTVLTEIF 179 (225)
Q Consensus 140 -----------~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~v~~~f~~l~~~~~ 179 (225)
.......+|+.+.++.|++.++.+ ..||..+|..+-..+.
T Consensus 160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 111235678888999999998843 3466676665544443
No 380
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.26 E-value=7.5e-06 Score=60.28 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-+++.|..|+|||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999998764
No 381
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.23 E-value=3.5e-06 Score=64.48 Aligned_cols=121 Identities=19% Similarity=0.237 Sum_probs=79.1
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCcEEEEEeC
Q 027292 63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISR----------RQSFDHIPRWLEELRSHA-DKNIVIILIGNK 131 (225)
Q Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK 131 (225)
...+.+.+.|.+|+...+..|.+.+.+.-.++|++.++. ...++...-++..+..+. -.+.++|+++||
T Consensus 196 l~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNK 275 (359)
T KOG0085|consen 196 LQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 275 (359)
T ss_pred hhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEech
Confidence 345567789999988888888888888777777766553 222233333444444332 147899999999
Q ss_pred CCCCC----------------CCCCCHHHHHHHHHH----cC-----C-eEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 132 SDLEE----------------QRAVPTEDAKEFAQK----EG-----L-FFLETSALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 132 ~Dl~~----------------~~~~~~~~~~~~~~~----~~-----~-~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
.|+.+ .+..+.+.+++|..+ .+ + .-..+.|.+.+|++-+|..+.+.++++.-
T Consensus 276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 99843 123344445555433 22 1 13457788889999999999998887644
No 382
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.20 E-value=3.3e-06 Score=66.65 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=34.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCC------CCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDS------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (225)
.++|+|.+|||||||+|+|.+....... .....++.....+...+ ..++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence 6899999999999999999875332211 11111223333333322 26999999643
No 383
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.19 E-value=1.5e-05 Score=62.01 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=54.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcCC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRGA 90 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 90 (225)
.+|.++|.|.+|||||+..+.+-..+......++.......+. ...-.+++.|.||.-+ -........+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~--y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIR--YKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEe--ccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999987544333222211222222222 2445688999999422 111223345678
Q ss_pred CEEEEEEeCCChhhHHh
Q 027292 91 VGAMLVYDISRRQSFDH 107 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~ 107 (225)
+.+++|.|+..+-+...
T Consensus 138 nli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKK 154 (358)
T ss_pred cEEEEEeeccCcccHHH
Confidence 89999999877655444
No 384
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.18 E-value=3e-06 Score=67.76 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=36.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC------cCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292 19 KVVLIGDSAVGKSQILARFARN------EFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (225)
..+++|++|||||||+|+|... +.........-++.....+.+++.+ .++||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 5789999999999999999873 2222222222334444444453222 37899996543
No 385
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.17 E-value=5.5e-05 Score=63.10 Aligned_cols=143 Identities=18% Similarity=0.260 Sum_probs=81.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc-----------------CcCCCCCCCcceeee-------EEEEEEE-CCEEEEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFAR-----------------NEFSLDSKATIGVEF-------QTRTLVI-QHKSVKAQI 70 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~-----------------~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~l 70 (225)
.-+=|.|||+..+||||||.+|.. .+.+.+....+-.+. ....+.. ++-.+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 356799999999999999999965 122222211111111 1112222 466788999
Q ss_pred EeCCC--------c-----hh------------hhhhhHh----hh--cCCCEEEEEEeCCC----hhhHHhH-HHHHHH
Q 027292 71 WDTAG--------Q-----ER------------YRAVTSA----YY--RGAVGAMLVYDISR----RQSFDHI-PRWLEE 114 (225)
Q Consensus 71 ~Dt~G--------~-----~~------------~~~~~~~----~~--~~~d~~i~v~d~~~----~~s~~~~-~~~~~~ 114 (225)
+|+.| + ++ |....+. .+ +..=++++.-|.+- ++.+... .+-..+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 99988 0 00 1111110 11 12235666666542 2233222 333444
Q ss_pred HHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292 115 LRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE 163 (225)
Q Consensus 115 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (225)
+++. ++|+++++|-.+... .-..+...++..+++++++++++.+
T Consensus 176 Lk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 176 LKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH
Confidence 4444 899999999988543 2234556677888899988887664
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=98.16 E-value=4.1e-06 Score=69.35 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=34.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCC------CcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292 20 VVLIGDSAVGKSQILARFARNEFSLDSK------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (225)
++|+|.+|||||||||.|++........ ...-++.....+...... .++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 7999999999999999999754322111 111122333333333222 6899999643
No 387
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.13 E-value=1.8e-05 Score=64.75 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=83.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCC----------------CCCCcceeeeEEEEE--------------------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSL----------------DSKATIGVEFQTRTL-------------------- 59 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~----------------~~~~~~~~~~~~~~~-------------------- 59 (225)
..++|.|+|...+|||||+-.|.+++... ++..+........-+
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 46999999999999999997765533211 111111111111001
Q ss_pred E-ECCEEEEEEEEeCCCchhhhhhhHhh--hcCCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027292 60 V-IQHKSVKAQIWDTAGQERYRAVTSAY--YRGAVGAMLVYDISRR---QSFDHIPRWLEELRSHADKNIVIILIGNKSD 133 (225)
Q Consensus 60 ~-~~~~~~~~~l~Dt~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 133 (225)
. .++..-.+.|+|.+|+++|....-.. -+..|...+++-++-. .+-+. +. -....++|+.+|++|+|
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEH----Lg---LALaL~VPVfvVVTKID 284 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEH----LG---LALALHVPVFVVVTKID 284 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHh----hh---hhhhhcCcEEEEEEeec
Confidence 0 12223458899999999987654332 2356777777766531 11111 11 11123789999999999
Q ss_pred CCCCCCCCHHHHHH---H--------------------------HHHcCCeEEEeccCCCCCHHHHHH
Q 027292 134 LEEQRAVPTEDAKE---F--------------------------AQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 134 l~~~~~~~~~~~~~---~--------------------------~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
+-... +..+.+.. + ..+.-+++|.+|..+|.++.-+..
T Consensus 285 MCPAN-iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 285 MCPAN-ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred cCcHH-HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 74311 11111111 1 112235789999999999876543
No 388
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=0.00014 Score=62.86 Aligned_cols=157 Identities=14% Similarity=0.185 Sum_probs=79.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCC---------CC--C------------cceeeeEEEEEE-------ECCEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLD---------SK--A------------TIGVEFQTRTLV-------IQHKSV 66 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~---------~~--~------------~~~~~~~~~~~~-------~~~~~~ 66 (225)
--.|+|+|++|+||||++..|...-.... .+ . ..+..+....-. .....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 45788999999999999998865211000 00 0 000101100000 011246
Q ss_pred EEEEEeCCCchhhhhhhHh---hhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC
Q 027292 67 KAQIWDTAGQERYRAVTSA---YYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP 141 (225)
Q Consensus 67 ~~~l~Dt~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 141 (225)
.+.|+||+|.......... .+. .....++|++... +...+...+..+.. ..+.-+|+||.|... .
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~----~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG----R 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc----c
Confidence 7899999995433221110 010 1234667777663 23333333333332 235668889999753 2
Q ss_pred HHHHHHHHHHcCCeEEEeccCCCCCH-HHHH----HHHHHHHHHHHhhc
Q 027292 142 TEDAKEFAQKEGLFFLETSALEATNV-ENAF----MTVLTEIFNIVNKK 185 (225)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~~f----~~l~~~~~~~~~~~ 185 (225)
.-.+..+....+.++..++ +|..| +++. ..+++.+.......
T Consensus 500 lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~~A~~~~Lv~r~~~l~~~~ 546 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVT--DGQRVPDDLHRANAASLVLRLEDLRRAA 546 (559)
T ss_pred hhHHHHHHHHhCCCEEEEe--CCCCchhhhhcCCHHHHHHHHHHHHhhc
Confidence 3456666677788866664 34444 2222 24555555544433
No 389
>PRK13796 GTPase YqeH; Provisional
Probab=98.10 E-value=5.3e-06 Score=69.33 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=36.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCC----CCCCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSL----DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (225)
.+++|+|.+|||||||||+|....... ...+..+++.....+..++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 479999999999999999998643111 11122234444444444322 3699999963
No 390
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=6.1e-06 Score=68.65 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=70.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCC---------CC------------CcceeeeEEEEEE---------EC-CEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLD---------SK------------ATIGVEFQTRTLV---------IQ-HKSV 66 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~---------~~------------~~~~~~~~~~~~~---------~~-~~~~ 66 (225)
-.|+|+|++|+||||++..|...-.... .. ...+..+....-. .. ...+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 5799999999999999999864211000 00 0001111100000 00 0135
Q ss_pred EEEEEeCCCchhhhhh----hHhhh--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292 67 KAQIWDTAGQERYRAV----TSAYY--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV 140 (225)
Q Consensus 67 ~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 140 (225)
.+.|+||+|....... ...++ ...|.++||+|++-. ...+..+...+... +. --+|+||.|...
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~---~i-dglI~TKLDET~---- 391 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---HI-DGIVFTKFDETA---- 391 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC---CC-CEEEEEcccCCC----
Confidence 7899999996432211 12222 235778899987632 12233334444332 22 246679999764
Q ss_pred CHHHHHHHHHHcCCeEEEec
Q 027292 141 PTEDAKEFAQKEGLFFLETS 160 (225)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~S 160 (225)
..-.+-.++...+.|+..++
T Consensus 392 k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred CccHHHHHHHHHCcCEEEEe
Confidence 23345666777788866553
No 391
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.08 E-value=8.5e-06 Score=67.98 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=36.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcC------CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEF------SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (225)
.+|+|+|.+|||||||+|+|+.... .....| +++.....+..+. .+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~p--gtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFP--GTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCC--CeEeeEEEEEeCC---CCEEEECCCCC
Confidence 4899999999999999999987432 122222 3344444443322 35699999954
No 392
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.07 E-value=2.8e-05 Score=62.91 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=65.4
Q ss_pred CCCchh-hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027292 73 TAGQER-YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK 151 (225)
Q Consensus 73 t~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 151 (225)
.|||.. -.......+..+|++|+|+|+..+.+... .++.... . +.|+++|+||+|+.+.. ..+...+....
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~--~~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPE--VTKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHH--HHHHHHHHHHH
Confidence 467543 22334556889999999999987544322 1122221 2 68899999999986421 11122222234
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292 152 EGLFFLETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 152 ~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
.+..++.+|+.++.|++++.+.+...+-+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 466789999999999999998887776443
No 393
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.04 E-value=4.2e-05 Score=57.05 Aligned_cols=83 Identities=17% Similarity=0.064 Sum_probs=45.8
Q ss_pred EEEEEEEeCCCchhhhh----hhHhhh--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292 65 SVKAQIWDTAGQERYRA----VTSAYY--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (225)
...+.++|++|...+.. ....+. ...|.+++|+|...... ...+...+.+... ..-+|.||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence 35588899999643211 111111 24899999999864332 2233344433322 245677999976421
Q ss_pred CCCHHHHHHHHHHcCCeEE
Q 027292 139 AVPTEDAKEFAQKEGLFFL 157 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~ 157 (225)
..+..++...+.++.
T Consensus 156 ----g~~~~~~~~~~~p~~ 170 (173)
T cd03115 156 ----GAALSIRAVTGKPIK 170 (173)
T ss_pred ----chhhhhHHHHCcCeE
Confidence 222336666676643
No 394
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=3.1e-05 Score=60.93 Aligned_cols=60 Identities=22% Similarity=0.452 Sum_probs=43.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC----CCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS----KATIGVEFQTRTLVIQHKSVKAQIWDTAG 75 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 75 (225)
..++|+-+|.+|.|||||+..|++-.+.... .+..............+..+.+.+.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 4799999999999999999999987664333 23333333333333456677899999998
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=8.6e-05 Score=61.86 Aligned_cols=139 Identities=13% Similarity=0.089 Sum_probs=71.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCcceeeeE------------------EEEEE---------ECCEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSL---DSKATIGVEFQ------------------TRTLV---------IQHKSVK 67 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~---------~~~~~~~ 67 (225)
-.++|+|++|+||||++.+|...-... ......+.+.+ ...+. .......
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 468899999999999999997532111 00000011111 00000 0112457
Q ss_pred EEEEeCCCchhhhhh----hHhh--hcCCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCCC
Q 027292 68 AQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKN--IVIILIGNKSDLEEQR 138 (225)
Q Consensus 68 ~~l~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~ 138 (225)
+.++||+|...++.. ...+ ....+-.++|++++. .+....+..-+.......... -+--+|+||.|...
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-- 295 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-- 295 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence 899999995543222 1111 123345688998875 334443322222221110000 12346679999754
Q ss_pred CCCHHHHHHHHHHcCCeEEEec
Q 027292 139 AVPTEDAKEFAQKEGLFFLETS 160 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~S 160 (225)
..-.+..+....+.++..++
T Consensus 296 --~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 --NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred --CccHHHHHHHHHCcCeEEEe
Confidence 33446666777788766654
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=9.3e-05 Score=62.60 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=72.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc-----------------------eeeeEEEEEE-------ECCEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATI-----------------------GVEFQTRTLV-------IQHKSV 66 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~ 66 (225)
--.|+|+|+.|+||||++..|.+........... +.......-. ..-.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 3589999999999999999886531100000000 0000000000 001224
Q ss_pred EEEEEeCCCchhhhh----hhHhhh--cCCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 027292 67 KAQIWDTAGQERYRA----VTSAYY--RGAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA 139 (225)
Q Consensus 67 ~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 139 (225)
.+.++||+|...... ....+. ...+-.++|+|++. ...+. .++..+... + +--+|+||.|...
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~~---~-~~~~I~TKlDEt~--- 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQGH---G-IHGCIITKVDEAA--- 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcCC---C-CCEEEEEeeeCCC---
Confidence 588999999544221 122221 22456788888883 33333 333333221 2 2246679999754
Q ss_pred CCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 140 VPTEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
..-.+..+....+.++..++ +|.+|
T Consensus 341 -~~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred -CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 33446667777788866663 45555
No 397
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.01 E-value=0.00027 Score=52.96 Aligned_cols=86 Identities=23% Similarity=0.309 Sum_probs=59.4
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE 143 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 143 (225)
..+.+.++|||+.... .....+..+|.+++++..+. .+...+..+++.+... +.|+.+|+|++|.... ...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 4578999999975322 23455688999999998874 3455566666655543 5678899999996531 345
Q ss_pred HHHHHHHHcCCeEEE
Q 027292 144 DAKEFAQKEGLFFLE 158 (225)
Q Consensus 144 ~~~~~~~~~~~~~~~ 158 (225)
+++++.+..+++++-
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677778888877543
No 398
>PRK13695 putative NTPase; Provisional
Probab=98.00 E-value=0.00035 Score=52.19 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=44.0
Q ss_pred hhcCCCEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292 86 YYRGAVGAMLVYDISRR-QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA 164 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (225)
.+..+|+ +++|--.. +... ..+...+......+.|++++.+|... ......+....+..++++ +.
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~ 158 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TP 158 (174)
T ss_pred ccCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cc
Confidence 3456666 56773111 1111 23344444444457899999998532 133455555667777777 44
Q ss_pred CCHHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTEI 178 (225)
Q Consensus 165 ~~v~~~f~~l~~~~ 178 (225)
++-+++.+.+.+.+
T Consensus 159 ~~r~~~~~~~~~~~ 172 (174)
T PRK13695 159 ENRDSLPFEILNRL 172 (174)
T ss_pred hhhhhHHHHHHHHH
Confidence 45567777666643
No 399
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.00 E-value=1.5e-05 Score=64.53 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=36.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCC------CcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSK------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (225)
-.++++|++|+|||||+|.|.+........ ....++.....+..... ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 469999999999999999998854332211 11112233333333322 258999997544
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.97 E-value=5.8e-05 Score=60.50 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=65.5
Q ss_pred HhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccC
Q 027292 84 SAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSAL 162 (225)
Q Consensus 84 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (225)
..-..++|-+|+|+++.+++ +...+.+++-..... ++..++++||+|+.++.....++.......++.+++.+|++
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence 33344567777777777754 566667766555443 56667778999998744333345666777889999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLTEI 178 (225)
Q Consensus 163 ~~~~v~~~f~~l~~~~ 178 (225)
++.++.++.+++...+
T Consensus 151 ~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 151 NGDGLEELAELLAGKI 166 (301)
T ss_pred CcccHHHHHHHhcCCe
Confidence 9999999988776543
No 401
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.95 E-value=6.6e-05 Score=63.91 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=50.4
Q ss_pred EEEEEEEeCCCchhhh----hhhHhhhc---CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292 65 SVKAQIWDTAGQERYR----AVTSAYYR---GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (225)
.+.+.++||+|..... .....++. ..+-+++|++++.. ...+...+..+... + +--+|+||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~- 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS- 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc-
Confidence 3578999999964332 12223333 23466778887642 12222223332211 2 2246789999754
Q ss_pred CCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 138 RAVPTEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
..-.+..+....+.++..++ +|.+|
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 23356777778888876664 34444
No 402
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.94 E-value=0.00019 Score=58.83 Aligned_cols=89 Identities=19% Similarity=0.146 Sum_probs=52.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhhc--------CCCEEEEEEeCCChhhHHh-HHHH-HHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYR--------GAVGAMLVYDISRRQSFDH-IPRW-LEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~-~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
....++++.|...-......+.. ..|++|-|+|+.+...... .... ..++. . . =+|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-~--A---D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-F--A---DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-h--C---cEEEEecccCC
Confidence 45778899986544333333322 3478999999987433222 2222 22221 1 1 26788999998
Q ss_pred CCCCCCHHHHHHHHHHcC--CeEEEeccC
Q 027292 136 EQRAVPTEDAKEFAQKEG--LFFLETSAL 162 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 162 (225)
+... .+..+...++++ ++++.++..
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~ 185 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSYG 185 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence 7442 455566666655 568888773
No 403
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.94 E-value=8e-06 Score=62.26 Aligned_cols=86 Identities=17% Similarity=0.057 Sum_probs=48.5
Q ss_pred EEEEEEeCCCchhhhhh----hHhhh--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 027292 66 VKAQIWDTAGQERYRAV----TSAYY--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA 139 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 139 (225)
+.+.++||+|...+... ...++ ...+-+++|.+++.... .+.. ......... . --+|+||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~-~~~~~~~~~--~-~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQ-ALAFYEAFG--I-DGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHH-HHHHHHHSS--T-CEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHH-HHHHhhccc--C-ceEEEEeecCCC---
Confidence 56899999995433211 11111 15678999999885432 2222 222223222 1 235679999754
Q ss_pred CCHHHHHHHHHHcCCeEEEecc
Q 027292 140 VPTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~Sa 161 (225)
..-.+-.++...+.++-.++.
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYITT 175 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEES
T ss_pred -CcccceeHHHHhCCCeEEEEC
Confidence 234466777788888666643
No 404
>PRK00098 GTPase RsgA; Reviewed
Probab=97.94 E-value=2e-05 Score=64.10 Aligned_cols=56 Identities=23% Similarity=0.221 Sum_probs=34.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc------ceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKAT------IGVEFQTRTLVIQHKSVKAQIWDTAGQE 77 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (225)
.++|+|.+|+|||||+|.|.+.......... ..++.....+..++. ..++||||..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~ 227 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFS 227 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcC
Confidence 5889999999999999999875432221111 012222223333222 3689999954
No 405
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.90 E-value=8e-05 Score=54.18 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=35.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 133 (225)
.+.+.++||+|.... ...++..+|-+|+|....-.+.+.- .++ .+... .-++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~-~k~--~~~~~-----~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQA-IKA--GIMEI-----ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHH-hhh--hHhhh-----cCEEEEeCCC
Confidence 467899999996422 2348888999999988773333221 111 12222 2366779987
No 406
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=2.5e-05 Score=64.35 Aligned_cols=159 Identities=19% Similarity=0.139 Sum_probs=95.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcC-------------------CC----------CCCCcceeeeEEEEEEECC
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEF-------------------SL----------DSKATIGVEFQTRTLVIQH 63 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~-------------------~~----------~~~~~~~~~~~~~~~~~~~ 63 (225)
++..-++++|+|+..+||||+-.++....- .. ......+.+.......+..
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 344568999999999999998776643100 00 0011112333333334445
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh---hhHHhHHHHH--HHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR---QSFDHIPRWL--EELRSHADKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~--~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (225)
....+.+.|.||+..|-........++|+.++|+++... ..|+.--+-. ..+..... ....|+++||+|-+...
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVN 233 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccC
Confidence 556799999999999988777778899999999998542 2233221111 12222222 45578888999964321
Q ss_pred C--CCH----HHHHHHHHHcC------CeEEEeccCCCCCHHHHHH
Q 027292 139 A--VPT----EDAKEFAQKEG------LFFLETSALEATNVENAFM 172 (225)
Q Consensus 139 ~--~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~f~ 172 (225)
. ... +.+..+.+.+| ..|+++|..+|.++.+...
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1 111 12333444333 3499999999999887653
No 407
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.85 E-value=0.00011 Score=54.61 Aligned_cols=135 Identities=16% Similarity=0.235 Sum_probs=69.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDT-AGQ--------------------- 76 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~--------------------- 76 (225)
||++-|.+|+|||||+++++..-... ..+. .-+....+..++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987632111 1111 1233333334445555555555 221
Q ss_pred -hhhhhh----hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCCCCCCHHHHHHHHH
Q 027292 77 -ERYRAV----TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKS-DLEEQRAVPTEDAKEFAQ 150 (225)
Q Consensus 77 -~~~~~~----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~-Dl~~~~~~~~~~~~~~~~ 150 (225)
+.|... ....+..+| ++|+|=-.+..+ ....|.+.+......+.|++.++.+. +. ..++++..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 112111 111224555 666774432111 12456666666666688988887776 32 22566777
Q ss_pred HcCCeEEEeccCCCCCH
Q 027292 151 KEGLFFLETSALEATNV 167 (225)
Q Consensus 151 ~~~~~~~~~Sa~~~~~v 167 (225)
..++.+++++..+...+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 77888998877665543
No 408
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.84 E-value=0.00085 Score=55.98 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=79.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc---ceeeeEEEEEE---------------------------ECCEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKAT---IGVEFQTRTLV---------------------------IQHKSV 66 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~---~~~~~~~~~~~---------------------------~~~~~~ 66 (225)
.=.|++||++||||||-+-.|...-........ .+++.+..-.. ..-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 446899999999999988877653221111111 11111111000 001235
Q ss_pred EEEEEeCCCchhhhhh----hHhhhcC--CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292 67 KAQIWDTAGQERYRAV----TSAYYRG--AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV 140 (225)
Q Consensus 67 ~~~l~Dt~G~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 140 (225)
.+.|+||.|...++.. ...++.. ..-+.+|++++.. .+.+...+..+... +.- =+|+||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~i~-~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---PID-GLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---Ccc-eeEEEcccccC----
Confidence 6999999997655433 2333332 2346667777732 23344444443322 222 25569999653
Q ss_pred CHHHHHHHHHHcCCeEEEeccCCCCCHHHHH----HHHHHHHHHHH
Q 027292 141 PTEDAKEFAQKEGLFFLETSALEATNVENAF----MTVLTEIFNIV 182 (225)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f----~~l~~~~~~~~ 182 (225)
..-.+-.++.+.+.|+-.++.-... .++++ +++++.++...
T Consensus 353 s~G~~~s~~~e~~~PV~YvT~GQ~V-PeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVTNGQRV-PEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred chhHHHHHHHHhCCCeEEEeCCCCC-CchhhhcChHHHHHHHhccc
Confidence 3444566666677775555332222 22333 35555555443
No 409
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.82 E-value=3.5e-05 Score=65.32 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=40.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (225)
.+.|.+||.|+|||||+||.|.+.+.- ....|.|.+....++.+.. .+.+.|+||-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 799999999999999999999997642 2233334444444544332 4678999994
No 410
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.81 E-value=0.00052 Score=56.31 Aligned_cols=86 Identities=8% Similarity=0.100 Sum_probs=48.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhhc--------CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYR--------GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (225)
....++++.|......+...++. ..+++|.|+|+.+...... .+.....+....+ +|++||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~--~~~~~~~Qi~~AD---~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN--QFTIAQSQVGYAD---RILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcc--ccHHHHHHHHhCC---EEEEeccccCCH
Confidence 45678899997655554444322 2478999999986432111 1111112222222 667899999763
Q ss_pred CCCCHHHHHHHHHHcC--CeEEEec
Q 027292 138 RAVPTEDAKEFAQKEG--LFFLETS 160 (225)
Q Consensus 138 ~~~~~~~~~~~~~~~~--~~~~~~S 160 (225)
.+.+.+..+..+ ++++.++
T Consensus 166 ----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 166 ----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred ----HHHHHHHHHHhCCCCEEEEec
Confidence 245555555554 5566654
No 411
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.80 E-value=0.00015 Score=43.14 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=31.7
Q ss_pred hhcCCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027292 86 YYRGAVGAMLVYDISR--RQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 133 (225)
.-+-.++++|++|.+. ..+.+.-..++..++.... +.|+++|.||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 3456789999999997 4566666677788887776 899999999998
No 412
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.80 E-value=4.6e-05 Score=65.48 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=71.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCC---CcceeeeE------------------EEEEE---------ECCEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSK---ATIGVEFQ------------------TRTLV---------IQHKSVK 67 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~---~~~~~~~~------------------~~~~~---------~~~~~~~ 67 (225)
--++|+|++|+||||++..|...-...... .-...+.+ ..... ..-.+..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 358999999999999999987522110000 00000000 00000 0011235
Q ss_pred EEEEeCCCchhhhhh---hHhhhcC---CCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292 68 AQIWDTAGQERYRAV---TSAYYRG---AVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV 140 (225)
Q Consensus 68 ~~l~Dt~G~~~~~~~---~~~~~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 140 (225)
+.++||+|....... ....+.. .+-.++|+|... ...+.+ ....+.. .+ ..-+|+||.|...
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~---i~~~f~~---~~-~~g~IlTKlDet~---- 405 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE---VVQAYRG---PG-LAGCILTKLDEAA---- 405 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH---HHHHhcc---CC-CCEEEEeCCCCcc----
Confidence 789999994432211 1111221 223678888874 323322 2222221 12 3346679999653
Q ss_pred CHHHHHHHHHHcCCeEEEeccCCCCCH-HHH
Q 027292 141 PTEDAKEFAQKEGLFFLETSALEATNV-ENA 170 (225)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~~ 170 (225)
..-.+..+....+.++..+ .+|.+| +++
T Consensus 406 ~~G~~l~i~~~~~lPI~yv--t~GQ~VPeDL 434 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYV--SNGQRVPEDL 434 (484)
T ss_pred cchHHHHHHHHHCCCeEEE--ecCCCChhhh
Confidence 3345666777788887666 345566 443
No 413
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.79 E-value=2.6e-05 Score=58.60 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=42.9
Q ss_pred EEEEEEeCCCchhhhhh--h---HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292 66 VKAQIWDTAGQERYRAV--T---SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV 140 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~--~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 140 (225)
....++++.|......+ . ....-..+.+|.|+|+.+......+...+..-.... + ++++||+|+.+.. .
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A--D---vIvlnK~D~~~~~-~ 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA--D---VIVLNKIDLVSDE-Q 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---S---EEEEE-GGGHHHH--
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc--C---EEEEeccccCChh-h
Confidence 46778888885443333 0 111235688999999987544444433332222222 2 6678999997632 2
Q ss_pred CHHHHHHHHHHcC
Q 027292 141 PTEDAKEFAQKEG 153 (225)
Q Consensus 141 ~~~~~~~~~~~~~ 153 (225)
..+..++..++.+
T Consensus 159 ~i~~~~~~ir~ln 171 (178)
T PF02492_consen 159 KIERVREMIRELN 171 (178)
T ss_dssp -HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHC
Confidence 2245555555543
No 414
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=7.5e-05 Score=67.27 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=72.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCC--C-CcceeeeEEE----------------EEEE-----------CCEEEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDS--K-ATIGVEFQTR----------------TLVI-----------QHKSVKA 68 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~--~-~~~~~~~~~~----------------~~~~-----------~~~~~~~ 68 (225)
-|+|+|+.|+||||.+..|...-..... . .-.+.+.+.. .... ...+..+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 5789999999999999998753211100 0 0000000000 0000 0123468
Q ss_pred EEEeCCCchhhhh----hhHhh--hcCCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC
Q 027292 69 QIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP 141 (225)
Q Consensus 69 ~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 141 (225)
.|+||+|...... ..... ....+-.++|+|++. .+.+..+ ...+......+ +-=+|+||.|... .
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~-i~glIlTKLDEt~----~ 338 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGED-VDGCIITKLDEAT----H 338 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCC-CCEEEEeccCCCC----C
Confidence 9999999433211 11111 123456889999874 3333333 22332221101 2246689999764 2
Q ss_pred HHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 142 TEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
.-.+-.+....+.++..++ +|.+|
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 3345666777788876663 45555
No 415
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00024 Score=59.92 Aligned_cols=134 Identities=20% Similarity=0.253 Sum_probs=69.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCc-CCCC-------CC--------------CcceeeeEEEE-EE-----ECCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNE-FSLD-------SK--------------ATIGVEFQTRT-LV-----IQHKSVKAQ 69 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~-~~~~-------~~--------------~~~~~~~~~~~-~~-----~~~~~~~~~ 69 (225)
.-|+|+|++||||||++.+|...- .... .+ ...+....... .. .....+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999987421 0000 00 00011111000 00 011345789
Q ss_pred EEeCCCchhhh----hhhHhhhc-----CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292 70 IWDTAGQERYR----AVTSAYYR-----GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV 140 (225)
Q Consensus 70 l~Dt~G~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 140 (225)
++||+|..... ..+..++. ..+-.++|+|++... +.+...+..+... +. --+|+||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~---~~-~glIlTKLDEt~---- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL---NY-RRILLTKLDEAD---- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC---CC-CEEEEEcccCCC----
Confidence 99999954221 11222222 234678899988532 1222222222111 22 246679999754
Q ss_pred CHHHHHHHHHHcCCeEEEecc
Q 027292 141 PTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~Sa 161 (225)
..-.+-.+....+.|+..++.
T Consensus 374 ~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred CccHHHHHHHHHCCCEEEEec
Confidence 223356666778888666643
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.75 E-value=0.00046 Score=58.72 Aligned_cols=87 Identities=16% Similarity=0.056 Sum_probs=49.1
Q ss_pred EEEEEEEeCCCchhhhhh----hHhh--hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292 65 SVKAQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (225)
.+.+.++||+|....... ...+ .-..|.+++|+|+.... ....+...+..... ..-+|+||.|....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~~~- 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGDAR- 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCccc-
Confidence 356899999995332211 1111 23578899999987532 33333444433222 23466899996431
Q ss_pred CCCHHHHHHHHHHcCCeEEEecc
Q 027292 139 AVPTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~Sa 161 (225)
.-.+.......++|+..+..
T Consensus 255 ---~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 ---GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 12366666777888655543
No 417
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.75 E-value=4.4e-05 Score=61.02 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=40.5
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCC----CCCCCcceeeeEEEE-EEECCEEEEEEEEeCCCc
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFS----LDSKATIGVEFQTRT-LVIQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~ 76 (225)
+.+..++++|+|.||+|||||||.+...... .......|.+..... +.+ .....+.++||||.
T Consensus 139 t~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri-~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 139 TLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRI-SHRPPVYLIDTPGI 206 (335)
T ss_pred ccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEe-ccCCceEEecCCCc
Confidence 3567899999999999999999988652221 122222334444444 223 23335889999993
No 418
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00041 Score=58.30 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=72.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCC----CC---------------------CCcceeeeEEEEEE-------ECCE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSL----DS---------------------KATIGVEFQTRTLV-------IQHK 64 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~----~~---------------------~~~~~~~~~~~~~~-------~~~~ 64 (225)
.-.|+++|++|+||||.+..|...-... .. ....+..+...... ....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 3578999999999999998886421000 00 00011111110000 0113
Q ss_pred EEEEEEEeCCCchhhhh----hhHhhhcC---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292 65 SVKAQIWDTAGQERYRA----VTSAYYRG---AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (225)
.+.+.++||+|...... ....++.. .+-.++|+|++.. ...+...+...... + +--+|+||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~---~-~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF---S-YKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC---C-CCEEEEEeccCCC-
Confidence 46799999999543221 11222332 2258899998854 22333333333211 1 2346679999654
Q ss_pred CCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 138 RAVPTEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
..-.+-.+....+.|+..++ +|.+|
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 23345566677788866553 45555
No 419
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.73 E-value=0.00013 Score=62.15 Aligned_cols=136 Identities=19% Similarity=0.109 Sum_probs=70.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCc----CC------CCCCC-----------cceeeeEEEEEEE-----------C
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNE----FS------LDSKA-----------TIGVEFQTRTLVI-----------Q 62 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~----~~------~~~~~-----------~~~~~~~~~~~~~-----------~ 62 (225)
.....|+++|.+|+||||++..|...- .. ..+.+ ..+..+....... .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345689999999999999998885410 00 00000 0011111100000 0
Q ss_pred CEEEEEEEEeCCCchhhhhhh----Hh--hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 63 HKSVKAQIWDTAGQERYRAVT----SA--YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
-....+.++||+|........ .. ..-.+|.+++|+|+.... ........+.... + ..-+|+||.|...
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a 246 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTA 246 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCC
Confidence 012378999999955432211 11 133678899999987642 2222233333221 1 2356779999653
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEec
Q 027292 137 QRAVPTEDAKEFAQKEGLFFLETS 160 (225)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~S 160 (225)
..-.+..+....+.|+..++
T Consensus 247 ----~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 ----KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred ----cccHHHHHHHHHCcCEEEEe
Confidence 12334555566677755553
No 420
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=9e-05 Score=62.88 Aligned_cols=118 Identities=16% Similarity=0.223 Sum_probs=76.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC------------cCCCCC--CCcceeeeEEEEEE----------------ECC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN------------EFSLDS--KATIGVEFQTRTLV----------------IQH 63 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~------------~~~~~~--~~~~~~~~~~~~~~----------------~~~ 63 (225)
..+.-++.|+.+...|||||-..|.-. .|.... ....+++....-+. -++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 445678899999999999999988531 111111 01111222221111 123
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
.++-+.++|.||+-.|.+.....++..|++++|+|..+.--.+.-..+.+.+.+ .+.-++++||.|.+
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHH
Confidence 457799999999999999999999999999999999874433332223344433 23345678999963
No 421
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.71 E-value=5.8e-05 Score=60.26 Aligned_cols=134 Identities=18% Similarity=0.146 Sum_probs=71.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCC---------C------------CCCCcceeeeEEEEEE---------E-CCEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFS---------L------------DSKATIGVEFQTRTLV---------I-QHKS 65 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~---------~------------~~~~~~~~~~~~~~~~---------~-~~~~ 65 (225)
.-+++|+|++|+||||++..+...-.. . .+....+..+....-. . ....
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 368999999999999999887542100 0 0000011111110000 0 1124
Q ss_pred EEEEEEeCCCchhhhhh----hHhhh--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 027292 66 VKAQIWDTAGQERYRAV----TSAYY--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA 139 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 139 (225)
+.+.++||+|....... +..++ ...|-+++|+|++.. .+.+..++..+... + +--+|+||.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~---~-~~~~I~TKlDet~--- 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---H-IDGIVFTKFDETA--- 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC---C-CCEEEEEeecCCC---
Confidence 67899999996532111 11222 245678999998632 12333334444322 2 2346679999764
Q ss_pred CCHHHHHHHHHHcCCeEEEec
Q 027292 140 VPTEDAKEFAQKEGLFFLETS 160 (225)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~S 160 (225)
..-.+-.++...+.|+..++
T Consensus 226 -~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 -SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 22345566667788866653
No 422
>PRK10867 signal recognition particle protein; Provisional
Probab=97.67 E-value=0.0001 Score=62.75 Aligned_cols=87 Identities=16% Similarity=0.040 Sum_probs=47.9
Q ss_pred EEEEEEEeCCCchhhhh----hhHhh--hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292 65 SVKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (225)
.+.+.|+||+|...... ....+ .-..+.+++|+|+... +........+.+.. +. .-+|+||.|....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~i-~giIlTKlD~~~r- 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--GL-TGVILTKLDGDAR- 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--CC-CEEEEeCccCccc-
Confidence 36789999999543211 11111 1256778999998643 22333334443322 12 3466799996431
Q ss_pred CCCHHHHHHHHHHcCCeEEEecc
Q 027292 139 AVPTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~Sa 161 (225)
.-.+.......+.|+..+..
T Consensus 256 ---gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 ---GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 12255666677887655543
No 423
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.66 E-value=0.00041 Score=47.06 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=49.5
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 20 VVLIG-DSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 20 I~vlG-~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
|.|.| ..|+||||+...+...-.. ...+..- +..+ ..+.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~-------~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLL-------IDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEE-------EeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56777 5589999998877543211 1111111 1111 11678999999864322 3366778999999998
Q ss_pred CCChhhHHhHHHHHH
Q 027292 99 ISRRQSFDHIPRWLE 113 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~ 113 (225)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555555554
No 424
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00029 Score=58.65 Aligned_cols=87 Identities=20% Similarity=0.124 Sum_probs=48.0
Q ss_pred EEEEEEEeCCCchhhhh----hhHhhhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292 65 SVKAQIWDTAGQERYRA----VTSAYYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (225)
.+.+.|+||+|...... ....+.. ..|.+++|.++.. ....+...+..+ ...+ +--+|+||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f---~~l~-i~glI~TKLDET~-- 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKL---AEIP-IDGFIITKMDETT-- 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhc---CcCC-CCEEEEEcccCCC--
Confidence 36789999999643322 1222222 3466777877642 222232323222 1112 2346689999754
Q ss_pred CCCHHHHHHHHHHcCCeEEEecc
Q 027292 139 AVPTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~Sa 161 (225)
..-.+-.++...+.|+..++.
T Consensus 357 --~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEec
Confidence 234466677778888666644
No 425
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.60 E-value=0.00027 Score=50.83 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=60.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCC
Q 027292 21 VLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS 100 (225)
Q Consensus 21 ~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 100 (225)
+.-|..|+|||++.-.+...-.. ......-.+... ....-.+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 45578899999988776542110 011000011000 000111678999999843 333456788999999999986
Q ss_pred ChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 101 RRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 101 ~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
. .++......++.+.+.. ...++.+|+|+++..
T Consensus 78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 3 33433334444444333 245677899999743
No 426
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.59 E-value=0.0007 Score=44.75 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=44.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh-hHhhhcCCCEEEEEEe
Q 027292 20 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV-TSAYYRGAVGAMLVYD 98 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d 98 (225)
+++.|..|+|||++...+...-....+ .. ...+ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~------~v----~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK------RV----LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC------eE----EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999988764321111 11 1111 7889999985432221 1445668899999998
Q ss_pred CCCh
Q 027292 99 ISRR 102 (225)
Q Consensus 99 ~~~~ 102 (225)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7643
No 427
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.58 E-value=0.00033 Score=54.06 Aligned_cols=75 Identities=31% Similarity=0.278 Sum_probs=42.6
Q ss_pred EEEEeC-CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH
Q 027292 68 AQIWDT-AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK 146 (225)
Q Consensus 68 ~~l~Dt-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 146 (225)
+.++|| +|.+.|. +.....+|.+|+|+|.+. .++....+..+...+. . -.++.+|+||.|-. .....
T Consensus 136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~el-g-~k~i~~V~NKv~e~------e~~~~ 203 (255)
T COG3640 136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL-G-IKRIFVVLNKVDEE------EELLR 203 (255)
T ss_pred EEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh-C-CceEEEEEeeccch------hHHHH
Confidence 556665 4544433 334567899999999874 3333333322222222 1 27899999999943 23344
Q ss_pred HHHHHcCC
Q 027292 147 EFAQKEGL 154 (225)
Q Consensus 147 ~~~~~~~~ 154 (225)
..+...+.
T Consensus 204 ~~~~~~~~ 211 (255)
T COG3640 204 ELAEELGL 211 (255)
T ss_pred hhhhccCC
Confidence 55555554
No 428
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54 E-value=0.00087 Score=47.64 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292 18 FKVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-.++|.|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 429
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.46 E-value=0.00072 Score=46.21 Aligned_cols=99 Identities=21% Similarity=0.152 Sum_probs=56.8
Q ss_pred cCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh
Q 027292 24 GDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ 103 (225)
Q Consensus 24 G~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 103 (225)
+..|+|||++...|...-.........-.+.. ... ...+.++|+|+.... .....+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~-~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQF-GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCC-CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence 45679999988777543221101111111111 111 117899999985432 2344677899999998775 44
Q ss_pred hHHhHHHHHHHHHhhcCC-CCcEEEEEeC
Q 027292 104 SFDHIPRWLEELRSHADK-NIVIILIGNK 131 (225)
Q Consensus 104 s~~~~~~~~~~~~~~~~~-~~piilv~nK 131 (225)
+...+..+++.+.+.... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 555566666666655433 3456677774
No 430
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.46 E-value=0.0096 Score=43.93 Aligned_cols=142 Identities=10% Similarity=0.093 Sum_probs=93.6
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
+..+...|+++|.-+.++..|...+..... ++.. .+.. ..-.=.|. + ....-...|.
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~----------~~~l-~Vh~------a~sLPLp~--e----~~~lRprIDl 67 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDK----------EFKL-KVHL------AKSLPLPS--E----NNNLRPRIDL 67 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhcc----------ceeE-EEEE------eccCCCcc--c----ccCCCceeEE
Confidence 556789999999999999999999986321 1111 1110 00011111 1 1112335799
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
++|++|.....++..+..=+..+....-.++ +.++++-....+...+...++.+++..++++++.+.-....+...+-+
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq 146 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ 146 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence 9999999999888887665555533332233 455556666666577889999999999999999998887766666555
Q ss_pred HHHHHH
Q 027292 173 TVLTEI 178 (225)
Q Consensus 173 ~l~~~~ 178 (225)
.|.+.+
T Consensus 147 RLL~~l 152 (176)
T PF11111_consen 147 RLLRML 152 (176)
T ss_pred HHHHHH
Confidence 555544
No 431
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.42 E-value=0.00099 Score=46.86 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
|++.|++|+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999875
No 432
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.38 E-value=0.0026 Score=52.75 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
=.+|.|.-|+|||||+++++.
T Consensus 6 v~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHh
Confidence 478889999999999999975
No 433
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0005 Score=56.68 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=54.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcC--------------cCCCC-------CCCcceeeeEEEEEE-----------
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARN--------------EFSLD-------SKATIGVEFQTRTLV----------- 60 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~--------------~~~~~-------~~~~~~~~~~~~~~~----------- 60 (225)
.+...--|+++|-.|+||||.+-.|... .|... .....++.++.....
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv 176 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence 3445556899999999999988877541 00000 000111222221111
Q ss_pred --ECCEEEEEEEEeCCCchhh-hhhhHhh-----hcCCCEEEEEEeCCChhhHHhH
Q 027292 61 --IQHKSVKAQIWDTAGQERY-RAVTSAY-----YRGAVGAMLVYDISRRQSFDHI 108 (225)
Q Consensus 61 --~~~~~~~~~l~Dt~G~~~~-~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~ 108 (225)
+..+.+.+.|.||+|.-.. .++.... .-..|-+|||.|++-....+..
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence 2345678999999994322 1222211 2257999999999976554443
No 434
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.36 E-value=0.00016 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-++|.|++|+|||++++++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 435
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.33 E-value=0.0002 Score=59.02 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=42.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ 76 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 76 (225)
....+++.|+|-|++||||+||.|...... ......|.+....++.. +-.+.|+|.||.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C-~vg~~pGvT~smqeV~L---dk~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKAC-NVGNVPGVTRSMQEVKL---DKKIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccc-cCCCCccchhhhhheec---cCCceeccCCce
Confidence 457899999999999999999999887652 22333345555555543 335789999994
No 436
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.29 E-value=0.004 Score=46.68 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=50.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEE--EeCCCchh-hhhhhHhhhcCCCEEEE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQI--WDTAGQER-YRAVTSAYYRGAVGAML 95 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~Dt~G~~~-~~~~~~~~~~~~d~~i~ 95 (225)
.+.|+|+.|+|||||++.+.+-..+.... + .+++..+.+.. .+.+|.+. .-.+...++...+++++
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~----i-------~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDN----D-------EWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcE----E-------EECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 68899999999999999988754322111 1 11121111111 11344333 33455556667765555
Q ss_pred --EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEe
Q 027292 96 --VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGN 130 (225)
Q Consensus 96 --v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 130 (225)
-.+.-|..+...+..|+..+... .+..++++-+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH 130 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEH 130 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEEC
Confidence 11122344555555565555332 1245555533
No 437
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.26 E-value=0.0098 Score=44.19 Aligned_cols=84 Identities=15% Similarity=0.029 Sum_probs=50.6
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH
Q 027292 67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK 146 (225)
Q Consensus 67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 146 (225)
.+.++|+|+..... ....+..+|.+|++++... .+...+..+++.+... . .....+++|+.|.... ...+..+
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~-~-~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL-G-IKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc-C-CceEEEEEeCCccccc--chhhHHH
Confidence 68999999854332 3445678999999998764 3344444555555442 1 2346788999986532 1222234
Q ss_pred HHHHHcCCeEE
Q 027292 147 EFAQKEGLFFL 157 (225)
Q Consensus 147 ~~~~~~~~~~~ 157 (225)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 55555666643
No 438
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00024 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.660 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
+||+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
No 439
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.25 E-value=0.0024 Score=51.42 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=64.1
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch---------------
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE--------------- 77 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------------- 77 (225)
......+++++|++|-|||+++++|....... .... ...+.+....+|...
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 34556889999999999999999998754321 1111 112244555555411
Q ss_pred ---------hhhhhhHhhhcCCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 027292 78 ---------RYRAVTSAYYRGAVGAMLVYDISRR---QSFDHIPRWLEELRSHAD-KNIVIILIGNKS 132 (225)
Q Consensus 78 ---------~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~piilv~nK~ 132 (225)
.........++...+=++++|--+- -+...-...++.++...+ ..+|+|.||++-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 1122233456677777888885541 233334555666665554 479999998764
No 440
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.21 E-value=0.00033 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.|+|.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 441
>PRK08118 topology modulation protein; Reviewed
Probab=97.19 E-value=0.00032 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999764
No 442
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.18 E-value=0.0035 Score=48.58 Aligned_cols=103 Identities=12% Similarity=0.090 Sum_probs=66.2
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISR--RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT 142 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 142 (225)
.+.+.|+|+.|..... ....+..+|.+|+=+-.+. .+.......|+..+.+....+.|..|+.|++..... ....
T Consensus 83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~-~~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARL-TRAQ 159 (231)
T ss_pred CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchh-hHHH
Confidence 4678999999854322 3445667999998776663 333333445666666555668999999999874321 1111
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 143 EDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 143 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
..+.++.. +++++.+...+..-+.++|.
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 22233332 58889998888877777776
No 443
>PRK07261 topology modulation protein; Provisional
Probab=97.17 E-value=0.00035 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.+|+|+|.+|+|||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998653
No 444
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.14 E-value=0.0005 Score=41.89 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..+|.|+.|+|||||+.++..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988653
No 445
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.07 E-value=0.00049 Score=49.38 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 027292 20 VVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~ 39 (225)
|+++|++|+|||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.0017 Score=50.71 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 027292 20 VVLIGDSAVGKSQILARFARNEF 42 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~~ 42 (225)
|.|+|++|||||||++-+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999987543
No 447
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.04 E-value=0.0033 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998753
No 448
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.04 E-value=0.0012 Score=55.48 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.5
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
......|+++|-.|+||||..-.|..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHH
Confidence 45568899999999999998877654
No 449
>PRK01889 GTPase RsgA; Reviewed
Probab=97.02 E-value=0.00077 Score=56.22 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292 18 FKVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-+++|+|.+|+|||||++.|.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 379999999999999999998743
No 450
>PF05729 NACHT: NACHT domain
Probab=97.00 E-value=0.003 Score=46.16 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
++|.|.+|+|||+++.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999998764
No 451
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.99 E-value=0.013 Score=42.32 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999998754
No 452
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.93 E-value=0.007 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-+++-|++|+||||.++.|+..
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999988763
No 453
>PRK10646 ADP-binding protein; Provisional
Probab=96.92 E-value=0.0076 Score=43.88 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-|++-|+-|+|||||.+.++..-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38899999999999999997743
No 454
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.92 E-value=0.00094 Score=41.80 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998765
No 455
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.92 E-value=0.014 Score=47.19 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=50.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc--CCCEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR--GAVGAML 95 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~ 95 (225)
-.|+|.|.+|+||||+++.|....+ ..+|-.....+..+...... ..+.+.+
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~~g~--------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av 60 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALEDLGY--------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAV 60 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHHcCC--------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEE
Confidence 3689999999999999999942211 11233333333333332222 2356788
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (225)
++|+.+..-......++..+... +.++.+|.-.++.
T Consensus 61 ~iD~r~~~~~~~~~~~~~~L~~~---g~~~~iI~L~a~~ 96 (288)
T PRK05416 61 VIDVRSRPFFDDLPEALDELRER---GIDVRVLFLDASD 96 (288)
T ss_pred EEccCchhhHHHHHHHHHHHHHc---CCcEEEEEEECCH
Confidence 88887654344455556666554 3444444455553
No 456
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0006 Score=57.66 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=57.0
Q ss_pred EEEEEEEEeCCCchhhhh----hhHhh--hcCCCEEEEEEeCC-ChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 64 KSVKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDIS-RRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
.++.+.++||+|...-.. ....+ ....|.+++|-.+- .-++.+++..+-..+..+..+..---++++|+|-.+
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVD 544 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchh
Confidence 456799999999543221 12222 34779999998654 457888888877777766543333456779999765
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEe
Q 027292 137 QRAVPTEDAKEFAQKEGLFFLET 159 (225)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~ 159 (225)
+. .-.+.......+.|++.+
T Consensus 545 d~---vg~~~~m~y~~~~pi~fv 564 (587)
T KOG0781|consen 545 DK---VGAAVSMVYITGKPILFV 564 (587)
T ss_pred hH---HHHHhhheeecCCceEEE
Confidence 21 112223333456675554
No 457
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.91 E-value=0.00044 Score=61.83 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=49.4
Q ss_pred EEEEEEeCCCc-------------hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027292 66 VKAQIWDTAGQ-------------ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKS 132 (225)
Q Consensus 66 ~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 132 (225)
..++++|.||. .....+...++...+.+|+.+...+.+ -....|+...++.-..+...+.|++|.
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~ats~alkiarevDp~g~RTigvitK~ 209 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IATSPALVVAREVDPGGSRTLEVITKF 209 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hhcCHHHHHHHhhCCCccchhHHhhhH
Confidence 35778899992 235677888899999999988877521 112345666676666677788888999
Q ss_pred CCCC
Q 027292 133 DLEE 136 (225)
Q Consensus 133 Dl~~ 136 (225)
|+.+
T Consensus 210 Dlmd 213 (657)
T KOG0446|consen 210 DFMD 213 (657)
T ss_pred Hhhh
Confidence 9865
No 458
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.90 E-value=0.0049 Score=44.40 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcC
Q 027292 19 KVVLIGDSAVGKSQILARFARNEF 42 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~ 42 (225)
-|++-|+-|+|||||.+.+...--
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcC
Confidence 478899999999999999987543
No 459
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.89 E-value=0.0028 Score=44.37 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
--|++-|+-|+|||||.+.++..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999998764
No 460
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.88 E-value=0.00096 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999887753
No 461
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.87 E-value=0.00039 Score=57.45 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG 75 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 75 (225)
+...-+-|.|+|.|++||||+||+|-........+ +.-..+..++-.-...+-++|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP----IpGETKVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP----IPGETKVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccC----CCCcchHHHHHHHHhceeEecCCC
No 462
>PRK06217 hypothetical protein; Validated
Probab=96.87 E-value=0.001 Score=50.16 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.+|+|+|.+|+|||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 463
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.86 E-value=0.0007 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 464
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.86 E-value=0.01 Score=50.61 Aligned_cols=55 Identities=25% Similarity=0.224 Sum_probs=37.1
Q ss_pred hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027292 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDL 134 (225)
Q Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (225)
.-......+++++++||= ..+.-=+..++++++..+++....+..+|+|-+|.+.
T Consensus 148 RVEIlKaLyr~a~iLILD-EPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E 202 (501)
T COG3845 148 RVEILKALYRGARLLILD-EPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE 202 (501)
T ss_pred HHHHHHHHhcCCCEEEEc-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 345566778888866651 1222234556777777777777778999999888763
No 465
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.84 E-value=0.0033 Score=46.93 Aligned_cols=44 Identities=25% Similarity=0.191 Sum_probs=28.6
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
|++++|+|+.++.+... ..+...+. ....+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987533221 22223321 2223689999999999964
No 466
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0014 Score=50.19 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHcCCeEE--EeccCCCCCHHHHHHHHHHHHHHH
Q 027292 141 PTEDAKEFAQKEGLFFL--ETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 141 ~~~~~~~~~~~~~~~~~--~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
..+.++.++.+..+-+| ++||.+.+-+.++++.+.+.+.+-
T Consensus 144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 34445555555555444 489999999999988777766543
No 467
>PRK04195 replication factor C large subunit; Provisional
Probab=96.83 E-value=0.029 Score=48.88 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.-.++|.|++|+|||++++.++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999774
No 468
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.82 E-value=0.0053 Score=49.21 Aligned_cols=121 Identities=20% Similarity=0.194 Sum_probs=66.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC-----------cCCCCCCCc--c-----ee-----------eeEEEEEE----
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN-----------EFSLDSKAT--I-----GV-----------EFQTRTLV---- 60 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~-----------~~~~~~~~~--~-----~~-----------~~~~~~~~---- 60 (225)
..+.+--++-|.-|+|||||+|.++.+ +|..+..-. . +- -..+-++.
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gv 133 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGV 133 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHH
Confidence 345566778999999999999999763 222211100 0 00 00000110
Q ss_pred -------ECCEEEEEEEEeCCCchhhhhhhHhhhc--------CCCEEEEEEeCCChh-hHHhH---HHHHHHHHhhcCC
Q 027292 61 -------IQHKSVKAQIWDTAGQERYRAVTSAYYR--------GAVGAMLVYDISRRQ-SFDHI---PRWLEELRSHADK 121 (225)
Q Consensus 61 -------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~-s~~~~---~~~~~~~~~~~~~ 121 (225)
.....+...+++|.|......+...|+. .-|++|-|+|+.+.. .++.. ..|-....+..-.
T Consensus 134 raie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~A 213 (391)
T KOG2743|consen 134 RAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALA 213 (391)
T ss_pred HHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhh
Confidence 0112356888999996655555444432 348999999987621 11111 1233333343322
Q ss_pred CCcEEEEEeCCCCCCC
Q 027292 122 NIVIILIGNKSDLEEQ 137 (225)
Q Consensus 122 ~~piilv~nK~Dl~~~ 137 (225)
+ .+++||.|+...
T Consensus 214 D---~II~NKtDli~~ 226 (391)
T KOG2743|consen 214 D---RIIMNKTDLVSE 226 (391)
T ss_pred h---eeeeccccccCH
Confidence 2 456799999763
No 469
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.81 E-value=0.002 Score=52.34 Aligned_cols=145 Identities=15% Similarity=0.169 Sum_probs=76.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC---------------------CcceeeeEEEE-------EEE----
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK---------------------ATIGVEFQTRT-------LVI---- 61 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~---------------------~~~~~~~~~~~-------~~~---- 61 (225)
....+-|+|+|-.|+||||-|-.|...-...... ...+...-... +.+
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 3457889999999999999888775410000000 00011111000 000
Q ss_pred --CCEEEEEEEEeCCCchhhhhh-------hHhhhcCC-----CEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCcEE
Q 027292 62 --QHKSVKAQIWDTAGQERYRAV-------TSAYYRGA-----VGAMLVYDISRR-QSFDHIPRWLEELRSHADKNIVII 126 (225)
Q Consensus 62 --~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~-----d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~pii 126 (225)
...++.+.|+||+|.-..... ....+... |=++++.|+.-. +.+++.+.+-..+ ++- -
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav------~l~-G 288 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV------GLD-G 288 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc------CCc-e
Confidence 123467999999994332211 11122222 337888898864 4555544433332 122 3
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 127 LIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 127 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
+|+||.|-...- -.+...+..+++|+..+ --|++++++.
T Consensus 289 iIlTKlDgtAKG----G~il~I~~~l~~PI~fi--GvGE~~~DL~ 327 (340)
T COG0552 289 IILTKLDGTAKG----GIILSIAYELGIPIKFI--GVGEGYDDLR 327 (340)
T ss_pred EEEEecccCCCc----ceeeeHHHHhCCCEEEE--eCCCChhhcc
Confidence 567999964321 22445667788887666 3455555543
No 470
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.81 E-value=0.0021 Score=48.83 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=38.2
Q ss_pred EEEEEeCCCchhhh-------hhhHhhhc--CCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 67 KAQIWDTAGQERYR-------AVTSAYYR--GAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 67 ~~~l~Dt~G~~~~~-------~~~~~~~~--~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
.+.++|+||+-+.. .+.++.-. -.-.+++++|..= .++...+..-+..+.......+|.|=|++|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 47899999964421 11111111 1234666666542 22333333334444333344899999999999854
No 471
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.80 E-value=0.0012 Score=47.56 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.|+|+|+.++|||||++.|++.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998753
No 472
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.79 E-value=0.0013 Score=46.31 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEF 42 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~ 42 (225)
-.++|+|++|+|||+++..++..-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 3689999999999999999987654
No 473
>PRK03839 putative kinase; Provisional
Probab=96.78 E-value=0.0012 Score=49.47 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
+|+|+|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 474
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.77 E-value=0.002 Score=49.51 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=22.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.....-|+|+|++|+|||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 335566889999999999999999754
No 475
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.76 E-value=0.0083 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 027292 20 VVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
|+|.|++|+||||+++.++..-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887643
No 476
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.01 Score=43.43 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998753
No 477
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.75 E-value=0.0017 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcC
Q 027292 19 KVVLIGDSAVGKSQILARFARNEF 42 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~ 42 (225)
-|.|+|++|||||||++-+-+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 378999999999999998866443
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.74 E-value=0.0014 Score=49.47 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.|+|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999664
No 479
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.72 E-value=0.008 Score=44.87 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHcCCeEE--EeccCCCCCHHHHHHHHHHHHHHH
Q 027292 139 AVPTEDAKEFAQKEGLFFL--ETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~--~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
+.....++.++.+..+.+| ++||.+.+-|.+++..+.+.+.+-
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg 202 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG 202 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 3344455566666555544 489999999999988777666554
No 480
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.71 E-value=0.0014 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 481
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.71 E-value=0.03 Score=41.27 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.+.|+|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 482
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.0018 Score=53.24 Aligned_cols=23 Identities=48% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 027292 20 VVLIGDSAVGKSQILARFARNEF 42 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~~ 42 (225)
++++|++|||||||++.+.+-+.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999988443
No 483
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.69 E-value=0.014 Score=42.31 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 027292 20 VVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
++|.|++|+|||+|+..++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999987643
No 484
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.68 E-value=0.0016 Score=46.65 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 485
>PRK14530 adenylate kinase; Provisional
Probab=96.66 E-value=0.0017 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.+|+|+|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 486
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.65 E-value=0.0017 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.|+++|++|+|||+|++.++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
No 487
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.63 E-value=0.0018 Score=50.00 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=39.8
Q ss_pred EEEEEEeCCCchhh----hhhhH--hhhcCCCEEEEEEeCCC----hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 66 VKAQIWDTAGQERY----RAVTS--AYYRGAVGAMLVYDISR----RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~----~~~~~--~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
..+.++|+||+-++ .+++. ..+...|.=+.++.+.| -+....+..++..+........|-|=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 35789999996542 22221 22333454444444333 1222334455555555555678888899999984
No 488
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0016 Score=46.85 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
....+||+|.|.||+|||||..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 36778999999999999999999974
No 489
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.61 E-value=0.0018 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.|+|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998764
No 490
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.61 E-value=0.0019 Score=43.99 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 027292 19 KVVLIGDSAVGKSQILARFA 38 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~ 38 (225)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999975
No 491
>PRK14532 adenylate kinase; Provisional
Probab=96.61 E-value=0.0019 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
++|+|+|++||||||+..+|..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999965
No 492
>PRK13949 shikimate kinase; Provisional
Probab=96.60 E-value=0.002 Score=47.94 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
+|+|+|++|+|||||.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 493
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.57 E-value=0.0021 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.|+|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 494
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.54 E-value=0.091 Score=41.96 Aligned_cols=81 Identities=20% Similarity=0.165 Sum_probs=43.8
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCc-EEEEEeCCCCCCCCCCCHH
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSH-ADKNIV-IILIGNKSDLEEQRAVPTE 143 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p-iilv~nK~Dl~~~~~~~~~ 143 (225)
+.+.++||+|...... ....+..+|.+|++..... .++..+...+..+... ...+.+ ..+|.|+.|.. .
T Consensus 116 yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~-~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-------~ 186 (267)
T cd02032 116 YDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDF-DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKT-------D 186 (267)
T ss_pred CCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCc-ccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCHH-------H
Confidence 5688999987532221 2233678999999887753 2333333333333222 123454 34678998842 2
Q ss_pred HHHHHHHHcCCe
Q 027292 144 DAKEFAQKEGLF 155 (225)
Q Consensus 144 ~~~~~~~~~~~~ 155 (225)
..+.+....+.+
T Consensus 187 ~i~~~~~~~~~~ 198 (267)
T cd02032 187 LIDKFVEAVGMP 198 (267)
T ss_pred HHHHHHHhCCCC
Confidence 334455555544
No 495
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.53 E-value=0.0022 Score=50.24 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=23.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
....+|++|+|.+|||||+|+..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 345689999999999999999998764
No 496
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.034 Score=45.61 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCc
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
...-|.++|..|+|||+|++-|.++.
T Consensus 187 df~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccC
Confidence 35568899999999999999998764
No 497
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.53 E-value=0.0024 Score=48.24 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.++|+|++|+|||||++.+++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998864
No 498
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.52 E-value=0.0025 Score=47.74 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-.+.|+|+.|+|||||++.++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4689999999999999998863
No 499
>PLN03025 replication factor C subunit; Provisional
Probab=96.52 E-value=0.026 Score=46.45 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292 18 FKVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
..++|.|++|+|||+++..+...-
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987653
No 500
>PRK04296 thymidine kinase; Provisional
Probab=96.51 E-value=0.017 Score=43.80 Aligned_cols=21 Identities=29% Similarity=0.205 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-+++.|++|+||||++..++.
T Consensus 4 i~litG~~GsGKTT~~l~~~~ 24 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAY 24 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHH
Confidence 367899999999998887765
Done!