Query 027292
Match_columns 225
No_of_seqs 149 out of 1877
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 12:36:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4.7E-43 1.6E-47 270.4 19.9 177 1-181 1-177 (216)
2 3cpj_B GTP-binding protein YPT 100.0 1.6E-37 5.6E-42 240.8 19.3 211 13-223 9-223 (223)
3 2bcg_Y Protein YP2, GTP-bindin 100.0 4.4E-36 1.5E-40 229.8 23.9 176 13-188 4-179 (206)
4 3tkl_A RAS-related protein RAB 100.0 5.3E-35 1.8E-39 221.7 25.0 181 5-185 4-184 (196)
5 2a5j_A RAS-related protein RAB 100.0 2.1E-34 7.2E-39 218.0 24.4 179 6-184 10-188 (191)
6 2bme_A RAB4A, RAS-related prot 100.0 2.3E-34 7.8E-39 216.5 24.0 178 12-189 5-182 (186)
7 1vg8_A RAS-related protein RAB 100.0 6.1E-35 2.1E-39 223.3 20.3 174 13-187 4-182 (207)
8 2hup_A RAS-related protein RAB 100.0 1.7E-34 5.8E-39 220.4 22.5 177 6-182 18-195 (201)
9 2fu5_C RAS-related protein RAB 100.0 6.8E-35 2.3E-39 218.9 19.7 174 13-186 4-177 (183)
10 2ew1_A RAS-related protein RAB 100.0 2.7E-34 9.4E-39 219.4 23.1 175 11-185 20-194 (201)
11 2gf9_A RAS-related protein RAB 100.0 8.2E-34 2.8E-38 214.3 23.9 175 9-183 14-188 (189)
12 2bov_A RAla, RAS-related prote 100.0 6E-34 2E-38 217.5 23.2 170 13-183 10-180 (206)
13 2oil_A CATX-8, RAS-related pro 100.0 8.1E-34 2.8E-38 215.0 23.4 175 10-184 18-192 (193)
14 3tw8_B RAS-related protein RAB 100.0 7.2E-34 2.5E-38 212.5 22.7 174 12-186 4-177 (181)
15 1z0f_A RAB14, member RAS oncog 100.0 9.9E-34 3.4E-38 211.3 22.8 169 12-180 10-178 (179)
16 1zbd_A Rabphilin-3A; G protein 100.0 2E-33 7E-38 214.4 25.0 172 14-185 5-176 (203)
17 2efe_B Small GTP-binding prote 100.0 1.1E-33 3.9E-38 211.6 22.8 170 12-181 7-176 (181)
18 2o52_A RAS-related protein RAB 100.0 6.9E-34 2.3E-38 216.9 21.8 177 12-188 20-196 (200)
19 2il1_A RAB12; G-protein, GDP, 100.0 9.2E-34 3.1E-38 214.8 20.3 174 8-181 17-191 (192)
20 2g6b_A RAS-related protein RAB 100.0 4E-33 1.4E-37 208.5 22.8 169 13-181 6-175 (180)
21 3dz8_A RAS-related protein RAB 100.0 2.2E-34 7.4E-39 217.9 16.0 173 11-183 17-189 (191)
22 1x3s_A RAS-related protein RAB 100.0 4.2E-33 1.4E-37 210.9 23.1 174 9-183 7-181 (195)
23 3bc1_A RAS-related protein RAB 100.0 5.5E-33 1.9E-37 209.9 23.5 173 13-185 7-190 (195)
24 1z08_A RAS-related protein RAB 100.0 1.3E-33 4.6E-38 209.0 19.0 167 14-180 3-169 (170)
25 3kkq_A RAS-related protein M-R 100.0 6.5E-33 2.2E-37 208.1 23.0 168 12-180 13-182 (183)
26 3cbq_A GTP-binding protein REM 100.0 1.8E-33 6.2E-38 213.8 20.2 172 10-181 16-189 (195)
27 1r2q_A RAS-related protein RAB 100.0 5.2E-33 1.8E-37 205.6 21.6 164 15-178 4-167 (170)
28 1g16_A RAS-related protein SEC 100.0 3E-33 1E-37 207.0 20.2 167 15-182 1-167 (170)
29 2fg5_A RAB-22B, RAS-related pr 100.0 2.4E-33 8.1E-38 212.5 19.5 171 10-180 16-186 (192)
30 1z0j_A RAB-22, RAS-related pro 100.0 1.3E-32 4.3E-37 203.7 22.9 164 15-178 4-167 (170)
31 3cph_A RAS-related protein SEC 100.0 1.6E-32 5.5E-37 210.7 23.8 175 12-187 15-189 (213)
32 2fn4_A P23, RAS-related protei 100.0 8.7E-33 3E-37 206.6 21.7 171 12-183 4-175 (181)
33 1ek0_A Protein (GTP-binding pr 100.0 9.6E-33 3.3E-37 204.2 21.5 163 16-178 2-167 (170)
34 3t5g_A GTP-binding protein RHE 100.0 7.4E-33 2.5E-37 207.4 21.1 168 14-182 3-171 (181)
35 2f7s_A C25KG, RAS-related prot 100.0 3.6E-33 1.2E-37 215.2 19.5 174 13-186 21-205 (217)
36 1z2a_A RAS-related protein RAB 100.0 6.5E-33 2.2E-37 204.9 20.0 165 15-180 3-167 (168)
37 1z06_A RAS-related protein RAB 100.0 1.6E-32 5.6E-37 207.2 21.5 167 14-180 17-188 (189)
38 3q85_A GTP-binding protein REM 100.0 1E-32 3.5E-37 204.2 20.0 165 17-181 2-168 (169)
39 2y8e_A RAB-protein 6, GH09086P 100.0 1.1E-32 3.9E-37 205.6 20.2 166 15-180 12-177 (179)
40 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.4E-32 1.8E-36 201.8 23.6 167 13-180 3-174 (177)
41 2nzj_A GTP-binding protein REM 100.0 3.4E-32 1.2E-36 202.4 22.3 169 15-184 2-173 (175)
42 2p5s_A RAS and EF-hand domain 100.0 7.5E-33 2.6E-37 210.8 18.9 168 13-180 24-197 (199)
43 2j0v_A RAC-like GTP-binding pr 100.0 2.3E-33 7.9E-38 215.6 16.1 170 15-186 7-186 (212)
44 2a9k_A RAS-related protein RAL 100.0 3.2E-32 1.1E-36 204.5 21.9 170 13-183 14-184 (187)
45 3c5c_A RAS-like protein 12; GD 100.0 9.7E-33 3.3E-37 208.3 19.0 167 12-180 16-186 (187)
46 3ihw_A Centg3; RAS, centaurin, 100.0 4.6E-32 1.6E-36 204.2 22.3 167 10-183 13-183 (184)
47 2gf0_A GTP-binding protein DI- 100.0 1.2E-32 4.1E-37 209.1 18.7 164 15-180 6-171 (199)
48 2g3y_A GTP-binding protein GEM 100.0 3.7E-32 1.3E-36 208.9 21.5 170 12-181 32-204 (211)
49 2hxs_A RAB-26, RAS-related pro 100.0 6.7E-33 2.3E-37 206.9 16.8 167 15-181 4-174 (178)
50 3q3j_B RHO-related GTP-binding 100.0 1.6E-32 5.3E-37 211.6 18.9 169 13-183 23-206 (214)
51 3oes_A GTPase rhebl1; small GT 100.0 9.8E-33 3.4E-37 210.5 17.3 169 14-183 21-190 (201)
52 4dsu_A GTPase KRAS, isoform 2B 100.0 2.1E-31 7.3E-36 200.4 24.0 169 15-185 2-171 (189)
53 2yc2_C IFT27, small RAB-relate 100.0 8.8E-33 3E-37 211.2 16.5 171 15-185 18-197 (208)
54 3clv_A RAB5 protein, putative; 100.0 1.6E-31 5.4E-36 203.4 23.4 165 15-182 5-206 (208)
55 3reg_A RHO-like small GTPase; 100.0 7.7E-32 2.6E-36 204.3 21.6 167 13-181 19-189 (194)
56 1ky3_A GTP-binding protein YPT 100.0 3.1E-32 1.1E-36 203.7 19.0 170 13-182 4-180 (182)
57 2q3h_A RAS homolog gene family 100.0 7E-32 2.4E-36 205.5 21.2 171 12-184 15-199 (201)
58 1u8z_A RAS-related protein RAL 100.0 7.3E-32 2.5E-36 198.9 20.6 164 16-180 3-167 (168)
59 2atx_A Small GTP binding prote 100.0 1.1E-31 3.9E-36 203.3 22.0 165 13-179 14-192 (194)
60 3q72_A GTP-binding protein RAD 100.0 7.4E-32 2.5E-36 199.0 20.1 163 17-181 2-165 (166)
61 1c1y_A RAS-related protein RAP 100.0 6.9E-32 2.4E-36 199.1 19.3 162 17-179 3-166 (167)
62 2iwr_A Centaurin gamma 1; ANK 100.0 2.3E-31 7.9E-36 198.7 21.2 165 15-186 5-175 (178)
63 1kao_A RAP2A; GTP-binding prot 100.0 1.4E-31 4.7E-36 197.3 19.6 163 17-180 3-166 (167)
64 3l0i_B RAS-related protein RAB 100.0 8.7E-35 3E-39 221.6 2.2 178 4-181 20-197 (199)
65 2atv_A RERG, RAS-like estrogen 100.0 2.8E-31 9.7E-36 201.6 21.0 166 15-182 26-193 (196)
66 1gwn_A RHO-related GTP-binding 100.0 1.3E-31 4.5E-36 205.1 18.7 167 12-180 23-204 (205)
67 1m7b_A RND3/RHOE small GTP-bin 100.0 1.7E-31 5.8E-36 200.8 18.7 165 14-180 4-183 (184)
68 3con_A GTPase NRAS; structural 100.0 1.8E-30 6.3E-35 195.9 23.2 168 15-184 19-187 (190)
69 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.9E-31 1.4E-35 198.5 19.1 164 16-181 4-181 (186)
70 2gco_A H9, RHO-related GTP-bin 100.0 1.7E-30 5.9E-35 198.1 22.7 164 15-180 23-200 (201)
71 2j1l_A RHO-related GTP-binding 100.0 3.8E-31 1.3E-35 203.8 19.2 167 15-183 32-212 (214)
72 4djt_A GTP-binding nuclear pro 100.0 1.1E-31 3.7E-36 207.1 15.8 172 13-184 7-179 (218)
73 2erx_A GTP-binding protein DI- 100.0 8.4E-31 2.9E-35 194.0 19.0 162 16-178 2-165 (172)
74 2ce2_X GTPase HRAS; signaling 100.0 3.2E-30 1.1E-34 189.5 21.8 162 17-180 3-165 (166)
75 4bas_A ADP-ribosylation factor 100.0 1.1E-31 3.9E-36 203.7 14.2 175 4-184 4-193 (199)
76 2f9l_A RAB11B, member RAS onco 100.0 8.7E-30 3E-34 193.9 24.1 175 15-189 3-177 (199)
77 3gj0_A GTP-binding nuclear pro 100.0 3E-31 1E-35 205.1 15.5 170 11-183 9-178 (221)
78 3t1o_A Gliding protein MGLA; G 100.0 2E-31 6.7E-36 201.9 13.7 168 13-184 10-196 (198)
79 2fv8_A H6, RHO-related GTP-bin 100.0 4.6E-30 1.6E-34 196.6 21.3 165 15-181 23-201 (207)
80 2cjw_A GTP-binding protein GEM 100.0 4.3E-30 1.5E-34 194.7 20.7 168 15-182 4-174 (192)
81 3bwd_D RAC-like GTP-binding pr 100.0 2.7E-31 9.3E-36 198.8 11.5 163 15-179 6-180 (182)
82 4gzl_A RAS-related C3 botulinu 100.0 2.9E-30 1E-34 197.3 16.3 162 15-178 28-203 (204)
83 1oix_A RAS-related protein RAB 100.0 7.8E-29 2.7E-33 187.6 21.7 171 8-178 20-190 (191)
84 1zd9_A ADP-ribosylation factor 100.0 1.4E-29 4.9E-34 191.0 16.5 166 9-180 14-185 (188)
85 2h57_A ADP-ribosylation factor 100.0 6.5E-29 2.2E-33 187.5 18.3 163 12-180 16-187 (190)
86 1upt_A ARL1, ADP-ribosylation 100.0 1.8E-29 6.1E-34 187.0 13.3 159 15-180 5-169 (171)
87 1ksh_A ARF-like protein 2; sma 100.0 1.6E-28 5.6E-33 184.5 18.2 160 15-181 16-181 (186)
88 1r8s_A ADP-ribosylation factor 100.0 7.4E-30 2.5E-34 187.9 10.5 156 18-180 1-162 (164)
89 1m2o_B GTP-binding protein SAR 100.0 1.9E-28 6.6E-33 185.2 17.8 156 15-177 21-189 (190)
90 1f6b_A SAR1; gtpases, N-termin 100.0 7.8E-29 2.7E-33 188.6 15.6 155 16-177 24-196 (198)
91 2h17_A ADP-ribosylation factor 100.0 6.4E-29 2.2E-33 186.2 13.7 160 11-177 15-180 (181)
92 1zj6_A ADP-ribosylation factor 100.0 3.1E-28 1.1E-32 183.3 17.2 160 15-181 14-179 (187)
93 2zej_A Dardarin, leucine-rich 100.0 1.6E-29 5.5E-34 190.1 9.3 164 17-181 2-179 (184)
94 1fzq_A ADP-ribosylation factor 100.0 3.1E-28 1E-32 182.7 15.9 160 15-181 14-179 (181)
95 2wkq_A NPH1-1, RAS-related C3 100.0 1.3E-27 4.4E-32 195.1 20.7 163 16-180 154-330 (332)
96 3llu_A RAS-related GTP-binding 100.0 4.1E-29 1.4E-33 189.7 10.6 165 9-178 12-195 (196)
97 2b6h_A ADP-ribosylation factor 100.0 4.2E-29 1.4E-33 189.2 10.3 158 15-179 27-190 (192)
98 1moz_A ARL1, ADP-ribosylation 100.0 4.3E-28 1.5E-32 181.6 14.4 160 15-181 16-181 (183)
99 3th5_A RAS-related C3 botulinu 99.9 1.1E-30 3.9E-35 199.4 0.0 163 15-179 28-204 (204)
100 2x77_A ADP-ribosylation factor 100.0 6.7E-29 2.3E-33 187.2 8.3 160 15-181 20-185 (189)
101 2wji_A Ferrous iron transport 99.9 2.9E-27 9.9E-32 174.7 13.9 153 17-178 3-163 (165)
102 2qu8_A Putative nucleolar GTP- 99.9 1.5E-26 5.1E-31 179.7 18.3 168 14-185 26-210 (228)
103 2fh5_B SR-beta, signal recogni 99.9 2E-27 6.7E-32 182.6 11.9 159 14-177 4-213 (214)
104 3c5h_A Glucocorticoid receptor 99.9 1.4E-28 4.9E-33 194.3 5.5 169 9-179 11-254 (255)
105 2lkc_A Translation initiation 99.9 7.3E-27 2.5E-31 174.0 14.2 160 14-182 5-173 (178)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 2.7E-26 9.1E-31 185.8 14.7 159 16-178 2-179 (307)
107 2cxx_A Probable GTP-binding pr 99.9 1.1E-26 3.6E-31 174.9 11.6 159 17-184 1-188 (190)
108 3o47_A ADP-ribosylation factor 99.9 3.6E-26 1.2E-30 186.7 12.9 158 16-180 164-327 (329)
109 1svi_A GTP-binding protein YSX 99.9 5.9E-26 2E-30 171.7 12.4 159 13-178 19-193 (195)
110 2wjg_A FEOB, ferrous iron tran 99.9 5.8E-26 2E-30 170.8 12.2 157 16-181 6-170 (188)
111 3lvq_E ARF-GAP with SH3 domain 99.9 4.5E-25 1.5E-29 189.7 18.2 161 14-181 319-485 (497)
112 2dyk_A GTP-binding protein; GT 99.9 1E-25 3.5E-30 165.0 12.1 150 18-178 2-160 (161)
113 3r7w_B Gtpase2, GTP-binding pr 99.9 7.1E-27 2.4E-31 188.4 5.7 158 19-183 1-177 (331)
114 2gj8_A MNME, tRNA modification 99.9 7.8E-26 2.7E-30 168.3 10.4 153 16-178 3-164 (172)
115 3a1s_A Iron(II) transport prot 99.9 3.1E-25 1E-29 175.3 14.2 156 15-179 3-166 (258)
116 3dpu_A RAB family protein; roc 99.9 5.5E-26 1.9E-30 196.9 9.6 164 14-181 38-209 (535)
117 3b1v_A Ferrous iron uptake tra 99.9 2.2E-25 7.5E-30 177.2 10.4 153 16-178 2-162 (272)
118 3iev_A GTP-binding protein ERA 99.9 1.9E-24 6.4E-29 175.0 16.1 162 13-178 6-180 (308)
119 3pqc_A Probable GTP-binding pr 99.9 1.5E-24 5E-29 163.7 13.6 159 12-180 18-194 (195)
120 3iby_A Ferrous iron transport 99.9 1.9E-25 6.5E-30 176.3 9.0 151 18-177 2-164 (256)
121 1nrj_B SR-beta, signal recogni 99.9 2.5E-25 8.5E-30 171.3 6.2 146 12-166 7-170 (218)
122 3k53_A Ferrous iron transport 99.9 3.3E-24 1.1E-28 170.7 11.7 155 17-179 3-165 (271)
123 4dhe_A Probable GTP-binding pr 99.9 2.2E-24 7.4E-29 166.5 10.2 165 13-181 25-212 (223)
124 3i8s_A Ferrous iron transport 99.9 1.1E-24 3.7E-29 173.7 7.7 153 17-178 3-167 (274)
125 3qq5_A Small GTP-binding prote 99.9 1.9E-24 6.4E-29 181.2 6.9 166 5-179 22-195 (423)
126 2hjg_A GTP-binding protein ENG 99.9 2.3E-23 8E-28 176.2 13.6 161 15-181 173-350 (436)
127 4dcu_A GTP-binding protein ENG 99.9 4.5E-23 1.6E-27 175.4 14.1 164 14-183 192-372 (456)
128 2e87_A Hypothetical protein PH 99.9 2.4E-22 8.1E-27 165.9 16.1 163 15-182 165-338 (357)
129 3gee_A MNME, tRNA modification 99.9 9.7E-23 3.3E-27 173.4 13.9 157 16-179 232-397 (476)
130 1wf3_A GTP-binding protein; GT 99.9 3.2E-22 1.1E-26 161.3 13.0 154 16-178 6-171 (301)
131 1lnz_A SPO0B-associated GTP-bi 99.9 9.8E-23 3.4E-27 166.6 9.5 158 18-180 159-330 (342)
132 3sjy_A Translation initiation 99.9 3E-21 1E-25 161.8 17.3 160 13-178 4-190 (403)
133 3lxx_A GTPase IMAP family memb 99.9 9E-22 3.1E-26 153.7 12.3 164 13-180 25-214 (239)
134 1s0u_A EIF-2-gamma, translatio 99.9 5.8E-21 2E-25 160.2 17.7 159 14-178 5-196 (408)
135 2xtp_A GTPase IMAP family memb 99.9 4E-22 1.4E-26 157.6 9.6 165 13-181 18-209 (260)
136 1cip_A Protein (guanine nucleo 99.9 3.8E-22 1.3E-26 163.7 9.5 118 65-182 192-346 (353)
137 3cb4_D GTP-binding protein LEP 99.9 3.1E-21 1E-25 167.9 15.5 158 16-179 3-181 (599)
138 1mky_A Probable GTP-binding pr 99.9 3.3E-21 1.1E-25 163.2 14.8 151 18-180 2-166 (439)
139 2ywe_A GTP-binding protein LEP 99.9 5.9E-21 2E-25 165.9 16.6 160 14-179 3-183 (600)
140 3lxw_A GTPase IMAP family memb 99.9 2.1E-21 7.3E-26 152.4 12.2 167 14-180 18-208 (247)
141 1kk1_A EIF2gamma; initiation o 99.9 3.6E-21 1.2E-25 161.6 14.4 161 12-178 5-198 (410)
142 1xzp_A Probable tRNA modificat 99.9 1.7E-21 6E-26 165.8 12.4 153 17-180 243-405 (482)
143 1wb1_A Translation elongation 99.9 4.7E-21 1.6E-25 163.7 15.1 156 15-179 17-188 (482)
144 2qtf_A Protein HFLX, GTP-bindi 99.9 1.5E-20 5.1E-25 155.1 17.1 161 18-181 180-355 (364)
145 3j2k_7 ERF3, eukaryotic polype 99.9 1.2E-20 4.2E-25 159.4 15.2 159 12-172 12-217 (439)
146 3ohm_A Guanine nucleotide-bind 99.9 4.8E-21 1.6E-25 155.1 12.0 119 64-182 165-320 (327)
147 3p26_A Elongation factor 1 alp 99.8 3.2E-21 1.1E-25 165.0 10.6 153 16-170 32-228 (483)
148 2xtz_A Guanine nucleotide-bind 99.8 5.8E-21 2E-25 156.6 11.3 120 64-183 181-348 (354)
149 3geh_A MNME, tRNA modification 99.8 1.8E-21 6.3E-26 165.0 8.5 153 16-180 223-384 (462)
150 2hjg_A GTP-binding protein ENG 99.8 8.5E-22 2.9E-26 166.6 6.4 152 18-179 4-164 (436)
151 3t5d_A Septin-7; GTP-binding p 99.8 2.4E-21 8E-26 154.4 7.8 160 14-177 5-201 (274)
152 2ged_A SR-beta, signal recogni 99.8 3.6E-21 1.2E-25 145.1 8.3 116 14-138 45-172 (193)
153 1ega_A Protein (GTP-binding pr 99.8 1.3E-20 4.4E-25 152.0 11.6 156 16-178 7-173 (301)
154 1mky_A Probable GTP-binding pr 99.8 7E-20 2.4E-24 155.0 16.2 161 15-181 178-356 (439)
155 3izy_P Translation initiation 99.8 7.8E-23 2.7E-27 175.5 -2.2 158 16-178 3-166 (537)
156 1zcb_A G alpha I/13; GTP-bindi 99.8 2.8E-20 9.6E-25 153.1 12.4 119 65-183 200-356 (362)
157 1d2e_A Elongation factor TU (E 99.8 1E-20 3.5E-25 158.2 10.0 158 16-177 2-192 (397)
158 2elf_A Protein translation elo 99.8 9.6E-21 3.3E-25 156.6 9.5 147 19-181 23-181 (370)
159 1zun_B Sulfate adenylate trans 99.8 2.3E-20 8E-25 157.7 11.6 154 15-172 22-216 (434)
160 2c78_A Elongation factor TU-A; 99.8 3.7E-21 1.3E-25 161.3 6.3 149 14-166 8-180 (405)
161 2qag_A Septin-2, protein NEDD5 99.8 2.9E-21 1E-25 159.4 5.3 164 15-184 35-237 (361)
162 1jny_A EF-1-alpha, elongation 99.8 2.3E-21 8E-26 163.8 4.5 157 15-172 4-205 (435)
163 4fid_A G protein alpha subunit 99.8 2.5E-20 8.6E-25 151.5 9.9 118 63-180 158-328 (340)
164 1g7s_A Translation initiation 99.8 1.1E-19 3.8E-24 158.2 14.0 159 16-181 4-219 (594)
165 3tr5_A RF-3, peptide chain rel 99.8 2.9E-20 9.8E-25 160.1 9.6 119 14-136 10-148 (528)
166 3izq_1 HBS1P, elongation facto 99.8 1.3E-20 4.4E-25 164.9 6.8 156 15-170 165-362 (611)
167 1r5b_A Eukaryotic peptide chai 99.8 8.1E-21 2.8E-25 161.8 4.7 157 15-171 41-243 (467)
168 4dcu_A GTP-binding protein ENG 99.8 2.1E-20 7.2E-25 159.0 7.0 153 16-178 22-183 (456)
169 3avx_A Elongation factor TS, e 99.8 1.3E-19 4.5E-24 165.0 11.5 159 14-176 293-482 (1289)
170 2aka_B Dynamin-1; fusion prote 99.8 3.9E-20 1.3E-24 148.9 6.8 163 13-178 22-251 (299)
171 1zo1_I IF2, translation initia 99.8 3.3E-21 1.1E-25 164.2 0.1 156 15-176 2-163 (501)
172 1f60_A Elongation factor EEF1A 99.8 1.1E-19 3.8E-24 154.4 7.3 153 15-170 5-202 (458)
173 1pui_A ENGB, probable GTP-bind 99.8 6.6E-19 2.3E-23 134.4 10.8 157 13-178 22-197 (210)
174 3def_A T7I23.11 protein; chlor 99.8 4E-18 1.4E-22 134.8 14.2 124 16-142 35-171 (262)
175 2dy1_A Elongation factor G; tr 99.8 4.3E-18 1.5E-22 150.5 14.2 118 14-135 6-139 (665)
176 3t34_A Dynamin-related protein 99.8 8.3E-19 2.8E-23 144.9 8.1 156 16-173 33-254 (360)
177 3mca_A HBS1, elongation factor 99.8 2.1E-20 7E-25 163.2 -2.1 151 15-168 175-371 (592)
178 1udx_A The GTP-binding protein 99.7 9.9E-18 3.4E-22 140.1 12.8 161 18-182 158-327 (416)
179 2j69_A Bacterial dynamin-like 99.7 8.8E-18 3E-22 149.1 13.0 164 15-181 67-326 (695)
180 1jwy_B Dynamin A GTPase domain 99.7 9.5E-18 3.3E-22 135.9 12.0 163 14-179 21-261 (315)
181 1dar_A EF-G, elongation factor 99.7 1.1E-17 3.7E-22 148.5 12.9 118 13-136 8-143 (691)
182 2h5e_A Peptide chain release f 99.7 1.7E-17 5.8E-22 142.9 13.8 119 14-136 10-148 (529)
183 1h65_A Chloroplast outer envel 99.7 1E-17 3.5E-22 133.1 10.9 121 16-138 38-170 (270)
184 2rdo_7 EF-G, elongation factor 99.7 2.2E-16 7.4E-21 140.4 17.3 120 13-136 6-148 (704)
185 2qnr_A Septin-2, protein NEDD5 99.7 3.1E-18 1E-22 138.0 4.2 165 13-182 14-216 (301)
186 1azs_C GS-alpha; complex (lyas 99.7 7E-17 2.4E-21 134.0 12.3 119 65-183 216-388 (402)
187 1u0l_A Probable GTPase ENGC; p 99.7 2.8E-18 9.6E-23 138.3 3.6 134 32-176 32-169 (301)
188 2xex_A Elongation factor G; GT 99.7 1.2E-16 3.9E-21 142.0 13.4 118 13-136 6-141 (693)
189 2qag_C Septin-7; cell cycle, c 99.7 3.6E-17 1.2E-21 136.8 9.0 160 13-176 27-223 (418)
190 1wxq_A GTP-binding protein; st 99.7 1.6E-17 5.5E-22 138.4 6.5 85 18-102 1-114 (397)
191 2x2e_A Dynamin-1; nitration, h 99.7 4E-17 1.4E-21 134.4 4.5 159 15-176 29-254 (353)
192 2wsm_A Hydrogenase expression/ 99.6 8.8E-17 3E-21 123.6 5.5 155 16-181 29-215 (221)
193 3vqt_A RF-3, peptide chain rel 99.6 1.3E-15 4.3E-20 131.8 12.8 118 15-136 29-166 (548)
194 1jal_A YCHF protein; nucleotid 99.6 8.5E-15 2.9E-19 120.0 14.9 146 18-163 3-240 (363)
195 2hf9_A Probable hydrogenase ni 99.6 1E-17 3.6E-22 129.3 -3.1 154 16-180 37-224 (226)
196 1n0u_A EF-2, elongation factor 99.6 2.7E-15 9.3E-20 135.7 10.2 118 14-135 16-163 (842)
197 3p32_A Probable GTPase RV1496/ 99.6 2.6E-16 8.8E-21 129.7 2.7 104 65-180 171-284 (355)
198 2qpt_A EH domain-containing pr 99.6 2.1E-15 7.2E-20 130.6 7.6 118 13-136 61-232 (550)
199 4fn5_A EF-G 1, elongation fact 99.5 1.5E-13 5E-18 122.6 16.6 120 12-135 8-150 (709)
200 2dby_A GTP-binding protein; GD 99.5 1.7E-14 5.7E-19 118.9 9.7 154 18-171 2-253 (368)
201 3j25_A Tetracycline resistance 99.5 4.4E-15 1.5E-19 130.8 5.4 115 18-136 3-133 (638)
202 2www_A Methylmalonic aciduria 99.5 7.6E-15 2.6E-19 120.5 4.7 104 65-180 166-279 (349)
203 4a9a_A Ribosome-interacting GT 99.5 1.2E-12 4.1E-17 107.8 16.1 155 13-171 68-239 (376)
204 3zvr_A Dynamin-1; hydrolase, D 99.5 1E-13 3.4E-18 123.0 9.5 160 15-177 49-275 (772)
205 2p67_A LAO/AO transport system 99.5 6.8E-15 2.3E-19 120.5 1.5 104 65-179 148-260 (341)
206 1yrb_A ATP(GTP)binding protein 99.5 5.2E-13 1.8E-17 105.1 11.6 111 66-179 109-256 (262)
207 2yv5_A YJEQ protein; hydrolase 99.4 4.6E-13 1.6E-17 107.8 7.0 97 76-175 66-164 (302)
208 2qm8_A GTPase/ATPase; G protei 99.3 1.1E-12 3.9E-17 107.0 6.3 104 65-179 147-260 (337)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1.4E-10 4.8E-15 96.1 15.1 87 15-101 18-127 (392)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 6.6E-12 2.3E-16 103.9 6.5 88 15-102 20-129 (396)
211 3l82_B F-box only protein 4; T 99.2 1.2E-11 4.2E-16 92.8 4.2 102 75-179 111-222 (227)
212 3l2o_B F-box only protein 4; s 99.1 1.8E-10 6.3E-15 90.6 5.9 105 74-180 195-308 (312)
213 3h2y_A GTPase family protein; 99.0 1.6E-09 5.4E-14 89.4 10.2 96 75-177 55-157 (368)
214 3ec1_A YQEH GTPase; atnos1, at 98.9 1.2E-10 4.1E-15 96.2 -0.2 136 18-166 163-317 (369)
215 2j37_W Signal recognition part 98.9 1.7E-09 5.7E-14 92.4 5.3 152 15-177 99-310 (504)
216 3ec1_A YQEH GTPase; atnos1, at 98.8 6.1E-09 2.1E-13 86.0 8.0 96 75-177 57-159 (369)
217 3h2y_A GTPase family protein; 98.8 1.1E-10 3.7E-15 96.4 -2.7 135 18-160 161-310 (368)
218 2qag_B Septin-6, protein NEDD5 98.8 8.8E-09 3E-13 86.0 7.3 115 17-136 42-190 (427)
219 3sop_A Neuronal-specific septi 98.7 4.8E-08 1.6E-12 77.2 9.0 137 17-158 2-178 (270)
220 1puj_A YLQF, conserved hypothe 98.7 3.9E-08 1.3E-12 78.1 7.6 101 71-181 4-107 (282)
221 1tq4_A IIGP1, interferon-induc 98.7 5.1E-07 1.7E-11 75.3 14.2 156 17-178 69-251 (413)
222 3dm5_A SRP54, signal recogniti 98.5 5.1E-07 1.7E-11 75.7 8.6 136 16-161 99-274 (443)
223 1puj_A YLQF, conserved hypothe 98.4 2.1E-07 7.1E-12 74.0 5.2 59 15-77 118-176 (282)
224 3cnl_A YLQF, putative uncharac 98.4 1.4E-07 4.7E-12 74.2 2.9 57 18-78 100-156 (262)
225 3kl4_A SRP54, signal recogniti 98.3 1.5E-06 5E-11 72.9 6.5 91 65-167 179-277 (433)
226 2v3c_C SRP54, signal recogniti 98.2 5E-06 1.7E-10 69.8 9.3 85 64-159 179-271 (432)
227 1f5n_A Interferon-induced guan 98.2 1.3E-06 4.4E-11 75.9 5.3 63 15-77 36-102 (592)
228 3cnl_A YLQF, putative uncharac 98.2 9.7E-07 3.3E-11 69.3 3.6 91 73-176 4-97 (262)
229 1t9h_A YLOQ, probable GTPase E 98.1 4.7E-07 1.6E-11 72.6 1.3 88 82-172 79-169 (307)
230 3szr_A Interferon-induced GTP- 98.0 1.3E-05 4.4E-10 70.3 8.2 26 18-43 46-71 (608)
231 1j8m_F SRP54, signal recogniti 98.0 1.2E-05 3.9E-10 64.3 6.8 92 65-169 180-280 (297)
232 2rcn_A Probable GTPase ENGC; Y 98.0 1.7E-05 5.9E-10 64.8 7.1 84 86-174 127-213 (358)
233 1bif_A 6-phosphofructo-2-kinas 97.9 1.4E-06 4.9E-11 74.0 -0.6 110 15-129 37-156 (469)
234 3e70_C DPA, signal recognition 97.7 3.9E-05 1.3E-09 62.1 5.5 91 67-169 213-309 (328)
235 3q5d_A Atlastin-1; G protein, 97.7 0.00025 8.7E-09 59.6 10.0 25 15-39 65-89 (447)
236 2xxa_A Signal recognition part 97.3 0.0027 9.2E-08 53.3 11.4 81 65-156 183-270 (433)
237 1ye8_A Protein THEP1, hypothet 97.2 0.00017 5.9E-09 53.0 3.2 23 18-40 1-23 (178)
238 1zu4_A FTSY; GTPase, signal re 97.2 0.00077 2.6E-08 54.3 7.2 86 65-160 191-288 (320)
239 3cwq_A Para family chromosome 97.2 0.00033 1.1E-08 52.8 4.7 86 65-157 67-153 (209)
240 2rcn_A Probable GTPase ENGC; Y 97.1 0.00038 1.3E-08 56.9 4.0 24 19-42 217-240 (358)
241 1t9h_A YLOQ, probable GTPase E 97.1 0.00012 4E-09 58.7 1.0 23 19-41 175-197 (307)
242 1kgd_A CASK, peripheral plasma 97.1 0.00029 9.9E-09 51.7 3.0 22 19-40 7-28 (180)
243 1lvg_A Guanylate kinase, GMP k 97.0 0.00036 1.2E-08 52.1 3.0 21 19-39 6-26 (198)
244 2yv5_A YJEQ protein; hydrolase 96.9 0.0016 5.3E-08 52.0 6.3 22 19-41 167-188 (302)
245 3a00_A Guanylate kinase, GMP k 96.9 0.00048 1.6E-08 50.8 2.9 21 20-40 4-24 (186)
246 3tr0_A Guanylate kinase, GMP k 96.9 0.00051 1.7E-08 51.2 3.0 22 19-40 9-30 (205)
247 1zp6_A Hypothetical protein AT 96.9 0.00053 1.8E-08 50.5 3.0 23 18-40 10-32 (191)
248 3co5_A Putative two-component 96.9 0.002 6.9E-08 45.3 5.9 23 18-40 28-50 (143)
249 1znw_A Guanylate kinase, GMP k 96.9 0.00056 1.9E-08 51.3 3.0 22 19-40 22-43 (207)
250 3ney_A 55 kDa erythrocyte memb 96.8 0.00071 2.4E-08 50.5 3.3 23 18-40 20-42 (197)
251 1s96_A Guanylate kinase, GMP k 96.8 0.00063 2.2E-08 51.7 3.0 22 19-40 18-39 (219)
252 1z6g_A Guanylate kinase; struc 96.8 0.00065 2.2E-08 51.5 3.0 22 19-40 25-46 (218)
253 4gp7_A Metallophosphoesterase; 96.8 0.00063 2.1E-08 49.5 2.7 20 19-38 11-30 (171)
254 1htw_A HI0065; nucleotide-bind 96.7 0.00083 2.9E-08 48.3 3.0 23 19-41 35-57 (158)
255 3tau_A Guanylate kinase, GMP k 96.7 0.00081 2.8E-08 50.5 3.0 22 19-40 10-31 (208)
256 1ex7_A Guanylate kinase; subst 96.7 0.0009 3.1E-08 49.5 3.1 21 20-40 4-24 (186)
257 3c8u_A Fructokinase; YP_612366 96.7 0.0008 2.7E-08 50.5 2.7 26 15-40 20-45 (208)
258 1kag_A SKI, shikimate kinase I 96.7 0.00096 3.3E-08 48.3 2.9 23 18-40 5-27 (173)
259 3tif_A Uncharacterized ABC tra 96.7 0.00097 3.3E-08 51.2 3.0 22 19-40 33-54 (235)
260 1knq_A Gluconate kinase; ALFA/ 96.7 0.0013 4.4E-08 47.8 3.5 22 18-39 9-30 (175)
261 2bdt_A BH3686; alpha-beta prot 96.6 0.0011 3.7E-08 48.8 3.0 21 19-39 4-24 (189)
262 2qor_A Guanylate kinase; phosp 96.6 0.0011 3.9E-08 49.5 3.1 23 18-40 13-35 (204)
263 2chg_A Replication factor C sm 96.6 0.0048 1.6E-07 45.9 6.6 22 19-40 40-61 (226)
264 3lw7_A Adenylate kinase relate 96.6 0.0012 4.2E-08 47.5 3.2 20 18-37 2-21 (179)
265 2pcj_A ABC transporter, lipopr 96.6 0.0011 3.7E-08 50.6 2.9 22 19-40 32-53 (224)
266 2j41_A Guanylate kinase; GMP, 96.6 0.0011 3.9E-08 49.3 2.9 24 18-41 7-30 (207)
267 2i3b_A HCR-ntpase, human cance 96.6 0.0012 4.1E-08 49.0 2.9 22 19-40 3-24 (189)
268 3kb2_A SPBC2 prophage-derived 96.6 0.0013 4.6E-08 47.3 3.2 23 18-40 2-24 (173)
269 3fb4_A Adenylate kinase; psych 96.6 0.0013 4.6E-08 49.4 3.2 22 18-39 1-22 (216)
270 1ukz_A Uridylate kinase; trans 96.6 0.0019 6.6E-08 48.0 4.1 27 13-39 11-37 (203)
271 2onk_A Molybdate/tungstate ABC 96.6 0.0013 4.5E-08 50.7 3.2 22 19-40 26-47 (240)
272 3dl0_A Adenylate kinase; phosp 96.6 0.0014 4.8E-08 49.3 3.2 22 18-39 1-22 (216)
273 4eun_A Thermoresistant glucoki 96.5 0.0013 4.5E-08 48.9 3.0 22 18-39 30-51 (200)
274 1ly1_A Polynucleotide kinase; 96.5 0.0017 5.8E-08 47.1 3.5 22 18-39 3-24 (181)
275 3sr0_A Adenylate kinase; phosp 96.5 0.0015 5.2E-08 49.1 3.2 22 18-39 1-22 (206)
276 2bbw_A Adenylate kinase 4, AK4 96.5 0.0015 5.2E-08 50.3 3.3 21 18-38 28-48 (246)
277 1sgw_A Putative ABC transporte 96.5 0.0014 4.9E-08 49.6 3.1 22 19-40 37-58 (214)
278 1b0u_A Histidine permease; ABC 96.5 0.0014 4.8E-08 51.2 3.1 22 19-40 34-55 (262)
279 3ec2_A DNA replication protein 96.5 0.0013 4.5E-08 48.0 2.7 23 18-40 39-61 (180)
280 3gfo_A Cobalt import ATP-bindi 96.5 0.0015 5.1E-08 51.4 3.1 22 19-40 36-57 (275)
281 2cbz_A Multidrug resistance-as 96.5 0.0016 5.5E-08 50.0 3.2 22 19-40 33-54 (237)
282 1g6h_A High-affinity branched- 96.5 0.0015 5.3E-08 50.8 3.0 22 19-40 35-56 (257)
283 3asz_A Uridine kinase; cytidin 96.5 0.0016 5.6E-08 48.7 3.0 23 18-40 7-29 (211)
284 4g1u_C Hemin import ATP-bindin 96.4 0.0016 5.4E-08 51.0 3.0 23 19-41 39-61 (266)
285 1mv5_A LMRA, multidrug resista 96.4 0.0018 6.1E-08 50.0 3.3 22 19-40 30-51 (243)
286 2olj_A Amino acid ABC transpor 96.4 0.0016 5.6E-08 50.9 3.1 22 19-40 52-73 (263)
287 2pze_A Cystic fibrosis transme 96.4 0.0017 5.8E-08 49.7 3.1 22 19-40 36-57 (229)
288 2jaq_A Deoxyguanosine kinase; 96.4 0.0018 6.2E-08 48.0 3.1 21 19-39 2-22 (205)
289 2ff7_A Alpha-hemolysin translo 96.4 0.0018 6.2E-08 50.1 3.2 22 19-40 37-58 (247)
290 1sxj_E Activator 1 40 kDa subu 96.4 0.011 3.8E-07 47.7 8.1 21 19-39 38-58 (354)
291 1vpl_A ABC transporter, ATP-bi 96.4 0.0017 5.9E-08 50.5 3.1 22 19-40 43-64 (256)
292 3vaa_A Shikimate kinase, SK; s 96.4 0.002 6.8E-08 47.9 3.3 22 18-39 26-47 (199)
293 1ji0_A ABC transporter; ATP bi 96.4 0.0017 5.9E-08 50.0 3.0 22 19-40 34-55 (240)
294 2eyu_A Twitching motility prot 96.4 0.0017 5.9E-08 50.7 3.0 21 19-39 27-47 (261)
295 2if2_A Dephospho-COA kinase; a 96.4 0.0018 6.1E-08 48.2 3.0 22 18-39 2-23 (204)
296 2cdn_A Adenylate kinase; phosp 96.4 0.0023 7.8E-08 47.6 3.5 25 15-39 18-42 (201)
297 1np6_A Molybdopterin-guanine d 96.4 0.0019 6.5E-08 47.2 3.0 24 17-40 6-29 (174)
298 2qi9_C Vitamin B12 import ATP- 96.4 0.0018 6.2E-08 50.2 3.1 22 19-40 28-49 (249)
299 2d2e_A SUFC protein; ABC-ATPas 96.4 0.0019 6.4E-08 50.1 3.1 22 19-40 31-52 (250)
300 1u0l_A Probable GTPase ENGC; p 96.4 0.0022 7.4E-08 51.2 3.5 24 19-42 171-194 (301)
301 2zu0_C Probable ATP-dependent 96.4 0.002 6.7E-08 50.5 3.2 22 19-40 48-69 (267)
302 1nks_A Adenylate kinase; therm 96.4 0.0023 7.8E-08 46.9 3.4 22 18-39 2-23 (194)
303 1qhx_A CPT, protein (chloramph 96.4 0.0021 7.2E-08 46.6 3.1 23 18-40 4-26 (178)
304 3t61_A Gluconokinase; PSI-biol 96.4 0.0019 6.6E-08 48.0 2.9 24 17-40 18-41 (202)
305 2ghi_A Transport protein; mult 96.4 0.0021 7.2E-08 50.1 3.2 22 19-40 48-69 (260)
306 3uie_A Adenylyl-sulfate kinase 96.3 0.002 6.9E-08 47.9 3.0 24 17-40 25-48 (200)
307 2ihy_A ABC transporter, ATP-bi 96.3 0.0022 7.4E-08 50.6 3.3 22 19-40 49-70 (279)
308 1e4v_A Adenylate kinase; trans 96.3 0.0021 7.2E-08 48.3 3.1 22 18-39 1-22 (214)
309 2ixe_A Antigen peptide transpo 96.3 0.002 6.9E-08 50.6 3.0 22 19-40 47-68 (271)
310 1jjv_A Dephospho-COA kinase; P 96.3 0.0026 8.8E-08 47.5 3.5 22 18-39 3-24 (206)
311 1cke_A CK, MSSA, protein (cyti 96.3 0.0022 7.7E-08 48.4 3.2 22 18-39 6-27 (227)
312 3b85_A Phosphate starvation-in 96.3 0.0014 4.9E-08 49.3 2.0 22 19-40 24-45 (208)
313 2nq2_C Hypothetical ABC transp 96.3 0.0021 7.3E-08 49.9 3.0 23 19-41 33-55 (253)
314 2v9p_A Replication protein E1; 96.3 0.0022 7.4E-08 51.2 3.1 22 19-40 128-149 (305)
315 2ehv_A Hypothetical protein PH 96.3 0.0022 7.7E-08 49.1 3.1 20 19-38 32-51 (251)
316 1uf9_A TT1252 protein; P-loop, 96.3 0.0026 9.1E-08 47.1 3.5 27 14-40 5-31 (203)
317 1y63_A LMAJ004144AAA protein; 96.3 0.0027 9.2E-08 46.6 3.4 24 17-40 10-33 (184)
318 3cm0_A Adenylate kinase; ATP-b 96.3 0.0028 9.6E-08 46.3 3.5 23 17-39 4-26 (186)
319 1ak2_A Adenylate kinase isoenz 96.3 0.0025 8.6E-08 48.6 3.4 26 14-39 13-38 (233)
320 2qt1_A Nicotinamide riboside k 96.3 0.0031 1.1E-07 47.1 3.8 26 15-40 19-44 (207)
321 2yz2_A Putative ABC transporte 96.3 0.0022 7.4E-08 50.2 3.0 22 19-40 35-56 (266)
322 3lnc_A Guanylate kinase, GMP k 96.3 0.0013 4.6E-08 50.1 1.8 22 19-40 29-51 (231)
323 4a74_A DNA repair and recombin 96.3 0.0021 7.1E-08 48.6 2.8 22 19-40 27-48 (231)
324 1kht_A Adenylate kinase; phosp 96.3 0.0026 9E-08 46.5 3.3 22 18-39 4-25 (192)
325 3trf_A Shikimate kinase, SK; a 96.3 0.0027 9.4E-08 46.4 3.3 22 18-39 6-27 (185)
326 3aez_A Pantothenate kinase; tr 96.2 0.0023 8E-08 51.3 3.0 27 14-40 87-113 (312)
327 2pjz_A Hypothetical protein ST 96.2 0.0027 9.3E-08 49.6 3.3 23 19-41 32-54 (263)
328 2rhm_A Putative kinase; P-loop 96.2 0.0032 1.1E-07 46.2 3.4 22 18-39 6-27 (193)
329 2pt5_A Shikimate kinase, SK; a 96.2 0.003 1E-07 45.3 3.3 22 18-39 1-22 (168)
330 1fnn_A CDC6P, cell division co 96.2 0.0086 2.9E-07 48.9 6.4 22 19-40 46-67 (389)
331 3tlx_A Adenylate kinase 2; str 96.2 0.0034 1.2E-07 48.3 3.6 24 16-39 28-51 (243)
332 4ido_A Atlastin-1; GTPase, GTP 96.2 0.0093 3.2E-07 50.1 6.3 63 15-77 65-151 (457)
333 1via_A Shikimate kinase; struc 96.2 0.0031 1.1E-07 45.7 3.1 21 19-39 6-26 (175)
334 2x8a_A Nuclear valosin-contain 96.2 0.0027 9.4E-08 49.8 2.9 21 20-40 47-67 (274)
335 2plr_A DTMP kinase, probable t 96.2 0.0037 1.2E-07 46.6 3.5 22 18-39 5-26 (213)
336 1aky_A Adenylate kinase; ATP:A 96.2 0.0033 1.1E-07 47.5 3.3 23 17-39 4-26 (220)
337 2xb4_A Adenylate kinase; ATP-b 96.1 0.0034 1.2E-07 47.6 3.3 22 18-39 1-22 (223)
338 3uc9_A Increased recombination 96.1 0.0065 2.2E-07 46.2 4.7 29 13-41 25-53 (233)
339 1jbk_A CLPB protein; beta barr 96.1 0.0035 1.2E-07 45.5 3.2 23 18-40 44-66 (195)
340 2f1r_A Molybdopterin-guanine d 96.1 0.0014 4.9E-08 47.7 1.1 22 19-40 4-25 (171)
341 3fvq_A Fe(3+) IONS import ATP- 96.1 0.0029 1E-07 51.6 3.0 23 19-41 32-54 (359)
342 1xjc_A MOBB protein homolog; s 96.1 0.0035 1.2E-07 45.5 3.1 24 17-40 4-27 (169)
343 1tev_A UMP-CMP kinase; ploop, 96.1 0.0042 1.4E-07 45.6 3.5 22 18-39 4-25 (196)
344 1ixz_A ATP-dependent metallopr 96.1 0.0032 1.1E-07 48.6 3.0 21 20-40 52-72 (254)
345 2kjq_A DNAA-related protein; s 96.1 0.002 6.8E-08 45.8 1.7 22 19-40 38-59 (149)
346 1zd8_A GTP:AMP phosphotransfer 96.1 0.0035 1.2E-07 47.5 3.2 22 18-39 8-29 (227)
347 1z47_A CYSA, putative ABC-tran 96.1 0.0033 1.1E-07 51.2 3.1 23 19-41 43-65 (355)
348 1lw7_A Transcriptional regulat 96.1 0.0028 9.5E-08 51.9 2.6 24 17-40 170-193 (365)
349 1zak_A Adenylate kinase; ATP:A 96.1 0.0033 1.1E-07 47.5 2.9 22 18-39 6-27 (222)
350 2jeo_A Uridine-cytidine kinase 96.0 0.0034 1.2E-07 48.3 3.0 24 16-39 24-47 (245)
351 1rj9_A FTSY, signal recognitio 96.0 0.0034 1.1E-07 50.2 3.0 22 18-39 103-124 (304)
352 2bbs_A Cystic fibrosis transme 96.0 0.0035 1.2E-07 49.7 3.1 22 19-40 66-87 (290)
353 3iij_A Coilin-interacting nucl 96.0 0.0037 1.3E-07 45.5 3.0 23 17-39 11-33 (180)
354 2yyz_A Sugar ABC transporter, 96.0 0.0036 1.2E-07 51.1 3.1 22 19-40 31-52 (359)
355 2it1_A 362AA long hypothetical 96.0 0.0037 1.3E-07 51.1 3.2 23 19-41 31-53 (362)
356 2vp4_A Deoxynucleoside kinase; 96.0 0.0043 1.5E-07 47.3 3.3 26 15-40 18-43 (230)
357 3jvv_A Twitching mobility prot 96.0 0.0038 1.3E-07 51.0 3.1 21 19-39 125-145 (356)
358 3nh6_A ATP-binding cassette SU 96.0 0.0024 8.3E-08 51.0 1.9 22 19-40 82-103 (306)
359 3rlf_A Maltose/maltodextrin im 96.0 0.0039 1.3E-07 51.3 3.2 23 19-41 31-53 (381)
360 3b9q_A Chloroplast SRP recepto 96.0 0.0037 1.3E-07 49.8 3.0 23 17-39 100-122 (302)
361 3be4_A Adenylate kinase; malar 96.0 0.0042 1.4E-07 46.8 3.1 23 17-39 5-27 (217)
362 1g29_1 MALK, maltose transport 96.0 0.0039 1.3E-07 51.2 3.1 23 19-41 31-53 (372)
363 1v43_A Sugar-binding transport 96.0 0.0041 1.4E-07 51.1 3.2 22 19-40 39-60 (372)
364 3tui_C Methionine import ATP-b 96.0 0.0041 1.4E-07 50.9 3.2 23 19-41 56-78 (366)
365 2wwf_A Thymidilate kinase, put 96.0 0.0055 1.9E-07 45.7 3.7 23 17-39 10-32 (212)
366 2ze6_A Isopentenyl transferase 96.0 0.0041 1.4E-07 48.2 3.0 21 19-39 3-23 (253)
367 1qf9_A UMP/CMP kinase, protein 96.0 0.0055 1.9E-07 44.8 3.7 22 18-39 7-28 (194)
368 2v54_A DTMP kinase, thymidylat 95.9 0.0048 1.7E-07 45.7 3.3 23 18-40 5-27 (204)
369 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0038 1.3E-07 50.5 2.8 22 19-40 173-194 (330)
370 1gvn_B Zeta; postsegregational 95.9 0.0046 1.6E-07 48.9 3.3 24 16-39 32-55 (287)
371 3tqc_A Pantothenate kinase; bi 95.9 0.0064 2.2E-07 48.9 4.1 25 15-39 90-114 (321)
372 2gza_A Type IV secretion syste 95.9 0.0038 1.3E-07 51.1 2.9 22 19-40 177-198 (361)
373 2pbr_A DTMP kinase, thymidylat 95.9 0.0049 1.7E-07 45.2 3.2 21 19-39 2-22 (195)
374 3umf_A Adenylate kinase; rossm 95.9 0.0065 2.2E-07 46.0 3.9 21 19-39 31-51 (217)
375 2c95_A Adenylate kinase 1; tra 95.9 0.0049 1.7E-07 45.3 3.2 22 18-39 10-31 (196)
376 2yvu_A Probable adenylyl-sulfa 95.9 0.0068 2.3E-07 44.4 3.8 25 16-40 12-36 (186)
377 2iyv_A Shikimate kinase, SK; t 95.9 0.0045 1.5E-07 45.2 2.9 22 18-39 3-24 (184)
378 2ewv_A Twitching motility prot 95.9 0.0047 1.6E-07 50.7 3.1 21 19-39 138-158 (372)
379 1iy2_A ATP-dependent metallopr 95.9 0.0047 1.6E-07 48.4 3.0 21 20-40 76-96 (278)
380 2bwj_A Adenylate kinase 5; pho 95.8 0.0053 1.8E-07 45.3 3.2 23 17-39 12-34 (199)
381 1in4_A RUVB, holliday junction 95.8 0.0045 1.5E-07 50.0 3.0 23 18-40 52-74 (334)
382 1sq5_A Pantothenate kinase; P- 95.8 0.0045 1.5E-07 49.4 2.9 24 17-40 80-103 (308)
383 1rz3_A Hypothetical protein rb 95.8 0.0062 2.1E-07 45.3 3.5 24 16-39 21-44 (201)
384 2z0h_A DTMP kinase, thymidylat 95.8 0.0056 1.9E-07 45.0 3.2 21 19-39 2-22 (197)
385 1odf_A YGR205W, hypothetical 3 95.8 0.0063 2.2E-07 48.2 3.7 25 15-39 29-53 (290)
386 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0061 2.1E-07 47.4 3.5 23 17-39 4-26 (260)
387 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.0051 1.7E-07 46.4 3.0 21 19-39 25-45 (235)
388 3u61_B DNA polymerase accessor 95.8 0.21 7.2E-06 39.7 12.6 21 20-40 51-71 (324)
389 2p65_A Hypothetical protein PF 95.8 0.0041 1.4E-07 45.0 2.3 23 18-40 44-66 (187)
390 1e6c_A Shikimate kinase; phosp 95.8 0.0059 2E-07 43.9 3.1 22 18-39 3-24 (173)
391 3d31_A Sulfate/molybdate ABC t 95.8 0.0034 1.2E-07 51.1 1.9 23 19-41 28-50 (348)
392 3gd7_A Fusion complex of cysti 95.8 0.0052 1.8E-07 50.8 3.0 22 19-40 49-70 (390)
393 3kta_A Chromosome segregation 95.7 0.0059 2E-07 44.4 3.0 21 19-39 28-48 (182)
394 1nn5_A Similar to deoxythymidy 95.7 0.006 2E-07 45.5 3.1 22 18-39 10-31 (215)
395 1gtv_A TMK, thymidylate kinase 95.7 0.0021 7.3E-08 48.1 0.5 21 19-39 2-22 (214)
396 2vli_A Antibiotic resistance p 95.7 0.0039 1.3E-07 45.4 1.9 22 18-39 6-27 (183)
397 4e22_A Cytidylate kinase; P-lo 95.7 0.0066 2.3E-07 46.9 3.3 21 18-38 28-48 (252)
398 2p5t_B PEZT; postsegregational 95.7 0.0043 1.5E-07 48.0 2.2 25 15-39 30-54 (253)
399 2oap_1 GSPE-2, type II secreti 95.7 0.0054 1.9E-07 52.5 3.0 23 19-41 262-284 (511)
400 1lv7_A FTSH; alpha/beta domain 95.7 0.006 2E-07 47.1 3.0 23 18-40 46-68 (257)
401 2w58_A DNAI, primosome compone 95.7 0.0067 2.3E-07 44.9 3.2 23 18-40 55-77 (202)
402 3bos_A Putative DNA replicatio 95.7 0.0065 2.2E-07 46.0 3.2 24 17-40 52-75 (242)
403 1p9r_A General secretion pathw 95.7 0.0056 1.9E-07 51.1 2.9 22 19-40 169-190 (418)
404 2og2_A Putative signal recogni 95.7 0.006 2.1E-07 49.8 3.0 23 17-39 157-179 (359)
405 3pfi_A Holliday junction ATP-d 95.6 0.022 7.6E-07 45.7 6.3 23 18-40 56-78 (338)
406 1zuh_A Shikimate kinase; alpha 95.6 0.0079 2.7E-07 43.2 3.3 24 16-39 6-29 (168)
407 4dzz_A Plasmid partitioning pr 95.6 0.018 6.2E-07 42.5 5.4 85 66-157 76-162 (206)
408 2pez_A Bifunctional 3'-phospho 95.6 0.0084 2.9E-07 43.6 3.4 22 18-39 6-27 (179)
409 1cr0_A DNA primase/helicase; R 95.6 0.0062 2.1E-07 48.1 2.8 22 19-40 37-58 (296)
410 2npi_A Protein CLP1; CLP1-PCF1 95.6 0.0058 2E-07 51.6 2.8 23 18-40 139-161 (460)
411 1uj2_A Uridine-cytidine kinase 95.6 0.0082 2.8E-07 46.3 3.5 24 16-39 21-44 (252)
412 2yhs_A FTSY, cell division pro 95.6 0.0066 2.2E-07 51.6 3.0 23 17-39 293-315 (503)
413 1oxx_K GLCV, glucose, ABC tran 95.6 0.0034 1.2E-07 51.2 1.2 23 19-41 33-55 (353)
414 2cvh_A DNA repair and recombin 95.5 0.0076 2.6E-07 45.1 3.0 21 19-39 22-42 (220)
415 3nwj_A ATSK2; P loop, shikimat 95.5 0.0073 2.5E-07 46.8 2.9 22 18-39 49-70 (250)
416 2obl_A ESCN; ATPase, hydrolase 95.5 0.0075 2.6E-07 49.0 3.1 23 19-41 73-95 (347)
417 1n0w_A DNA repair protein RAD5 95.5 0.0079 2.7E-07 45.7 3.0 22 19-40 26-47 (243)
418 1vht_A Dephospho-COA kinase; s 95.5 0.0097 3.3E-07 44.7 3.4 22 18-39 5-26 (218)
419 3n70_A Transport activator; si 95.4 0.0089 3E-07 42.0 2.9 25 17-41 24-48 (145)
420 2f6r_A COA synthase, bifunctio 95.4 0.011 3.9E-07 46.5 3.8 25 15-39 73-97 (281)
421 1m7g_A Adenylylsulfate kinase; 95.4 0.009 3.1E-07 44.7 3.0 23 17-39 25-47 (211)
422 1f2t_A RAD50 ABC-ATPase; DNA d 95.4 0.011 3.6E-07 41.9 3.1 19 20-38 26-44 (149)
423 4eaq_A DTMP kinase, thymidylat 95.3 0.012 4.1E-07 44.8 3.6 25 16-40 25-49 (229)
424 1nij_A Hypothetical protein YJ 95.3 0.0083 2.8E-07 48.1 2.7 24 17-40 4-27 (318)
425 3r20_A Cytidylate kinase; stru 95.3 0.012 4E-07 45.1 3.3 23 17-39 9-31 (233)
426 1njg_A DNA polymerase III subu 95.3 0.0099 3.4E-07 44.7 2.9 21 19-39 47-67 (250)
427 3h4m_A Proteasome-activating n 95.3 0.01 3.5E-07 46.4 3.1 23 18-40 52-74 (285)
428 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.01 3.5E-07 45.7 3.0 24 17-40 39-62 (262)
429 3b9p_A CG5977-PA, isoform A; A 95.3 0.0095 3.3E-07 47.0 2.9 24 17-40 54-77 (297)
430 3t15_A Ribulose bisphosphate c 95.2 0.01 3.5E-07 47.0 2.9 24 17-40 36-59 (293)
431 3syl_A Protein CBBX; photosynt 95.2 0.013 4.4E-07 46.4 3.5 25 15-39 65-89 (309)
432 1ltq_A Polynucleotide kinase; 95.2 0.014 4.6E-07 46.2 3.5 22 18-39 3-24 (301)
433 3cf0_A Transitional endoplasmi 95.2 0.011 3.7E-07 47.0 2.9 23 18-40 50-72 (301)
434 2dpy_A FLII, flagellum-specifi 95.1 0.011 3.9E-07 49.5 3.1 23 19-41 159-181 (438)
435 1svm_A Large T antigen; AAA+ f 95.1 0.011 3.9E-07 48.5 3.0 22 18-39 170-191 (377)
436 2grj_A Dephospho-COA kinase; T 95.1 0.018 6.2E-07 42.6 3.8 28 13-40 8-35 (192)
437 1yqt_A RNAse L inhibitor; ATP- 95.1 0.013 4.5E-07 50.5 3.4 23 19-41 49-71 (538)
438 3euj_A Chromosome partition pr 95.0 0.012 4.2E-07 49.9 3.0 21 19-39 31-51 (483)
439 1l8q_A Chromosomal replication 95.0 0.012 4.2E-07 47.0 2.9 23 18-40 38-60 (324)
440 1tue_A Replication protein E1; 95.0 0.011 3.7E-07 44.3 2.3 21 19-39 60-80 (212)
441 1d2n_A N-ethylmaleimide-sensit 95.0 0.02 6.8E-07 44.6 3.9 25 16-40 63-87 (272)
442 2px0_A Flagellar biosynthesis 95.0 0.013 4.4E-07 46.5 2.8 86 65-160 182-273 (296)
443 4fcw_A Chaperone protein CLPB; 95.0 0.019 6.4E-07 45.4 3.8 24 17-40 47-70 (311)
444 1nlf_A Regulatory protein REPA 94.9 0.013 4.6E-07 45.8 2.8 21 19-39 32-52 (279)
445 2b8t_A Thymidine kinase; deoxy 94.9 0.011 3.7E-07 45.0 2.2 22 18-39 13-34 (223)
446 3qf7_A RAD50; ABC-ATPase, ATPa 94.9 0.015 5.1E-07 47.6 3.1 19 20-38 26-44 (365)
447 1ofh_A ATP-dependent HSL prote 94.9 0.016 5.3E-07 45.8 3.0 24 17-40 50-73 (310)
448 4b4t_K 26S protease regulatory 94.8 0.015 5.2E-07 48.6 3.0 22 19-40 208-229 (428)
449 3ozx_A RNAse L inhibitor; ATP 94.8 0.015 5.1E-07 50.2 3.1 23 19-41 27-49 (538)
450 3b60_A Lipid A export ATP-bind 94.8 0.015 5.2E-07 50.6 3.1 22 19-40 371-392 (582)
451 2qby_A CDC6 homolog 1, cell di 94.8 0.015 5.2E-07 47.2 2.9 23 18-40 46-68 (386)
452 1vma_A Cell division protein F 94.8 0.017 5.7E-07 46.1 3.0 86 66-161 187-284 (306)
453 3j16_B RLI1P; ribosome recycli 94.8 0.021 7.2E-07 50.0 3.9 23 19-41 105-127 (608)
454 4b4t_M 26S protease regulatory 94.8 0.016 5.6E-07 48.4 3.0 24 17-40 215-238 (434)
455 2dr3_A UPF0273 protein PH0284; 94.8 0.017 6E-07 43.9 3.0 21 19-39 25-45 (247)
456 3gmt_A Adenylate kinase; ssgci 94.8 0.02 6.9E-07 43.6 3.3 25 15-39 6-30 (230)
457 3b5x_A Lipid A export ATP-bind 94.7 0.017 5.9E-07 50.2 3.2 22 19-40 371-392 (582)
458 2qmh_A HPR kinase/phosphorylas 94.7 0.016 5.6E-07 43.1 2.7 24 18-41 35-58 (205)
459 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.017 5.7E-07 46.4 2.9 23 18-40 46-68 (322)
460 3zvl_A Bifunctional polynucleo 94.7 0.018 6.1E-07 48.0 3.1 24 17-40 258-281 (416)
461 3ea0_A ATPase, para family; al 94.7 0.17 5.8E-06 38.3 8.5 87 66-160 119-205 (245)
462 1q3t_A Cytidylate kinase; nucl 94.7 0.021 7.1E-07 43.5 3.2 24 16-39 15-38 (236)
463 3eie_A Vacuolar protein sortin 94.6 0.019 6.6E-07 45.9 3.1 24 17-40 51-74 (322)
464 4b4t_L 26S protease subunit RP 94.6 0.019 6.3E-07 48.2 3.0 24 17-40 215-238 (437)
465 3bk7_A ABC transporter ATP-bin 94.6 0.027 9.4E-07 49.2 4.2 23 19-41 119-141 (607)
466 3ake_A Cytidylate kinase; CMP 94.6 0.022 7.6E-07 42.1 3.2 21 19-39 4-24 (208)
467 3ozx_A RNAse L inhibitor; ATP 94.6 0.019 6.5E-07 49.5 3.1 23 19-41 296-318 (538)
468 3crm_A TRNA delta(2)-isopenten 94.6 0.023 7.8E-07 45.6 3.3 22 18-39 6-27 (323)
469 1sxj_C Activator 1 40 kDa subu 94.6 0.019 6.5E-07 46.3 2.9 22 19-40 48-69 (340)
470 2qgz_A Helicase loader, putati 94.6 0.022 7.4E-07 45.5 3.2 24 17-40 152-175 (308)
471 1yqt_A RNAse L inhibitor; ATP- 94.5 0.022 7.5E-07 49.1 3.4 23 19-41 314-336 (538)
472 2ga8_A Hypothetical 39.9 kDa p 94.5 0.028 9.4E-07 45.7 3.7 23 17-39 24-46 (359)
473 3bk7_A ABC transporter ATP-bin 94.5 0.022 7.7E-07 49.8 3.4 23 19-41 384-406 (607)
474 4b4t_J 26S protease regulatory 94.5 0.021 7.1E-07 47.3 3.0 23 18-40 183-205 (405)
475 3a8t_A Adenylate isopentenyltr 94.5 0.022 7.7E-07 45.9 3.1 22 19-40 42-63 (339)
476 3d3q_A TRNA delta(2)-isopenten 94.4 0.023 7.9E-07 45.9 3.1 22 18-39 8-29 (340)
477 1c9k_A COBU, adenosylcobinamid 94.4 0.025 8.7E-07 41.4 3.0 21 20-40 2-22 (180)
478 2r62_A Cell division protease 94.4 0.01 3.4E-07 46.1 0.9 21 19-39 46-66 (268)
479 3exa_A TRNA delta(2)-isopenten 94.4 0.025 8.5E-07 45.2 3.1 22 19-40 5-26 (322)
480 1azs_C GS-alpha; complex (lyas 94.4 0.029 1E-06 46.4 3.7 23 15-37 38-60 (402)
481 3qks_A DNA double-strand break 94.4 0.027 9.2E-07 42.0 3.1 21 19-39 25-45 (203)
482 2yl4_A ATP-binding cassette SU 94.4 0.016 5.3E-07 50.7 2.0 22 19-40 372-393 (595)
483 3uk6_A RUVB-like 2; hexameric 94.3 0.024 8.1E-07 46.0 3.0 22 19-40 72-93 (368)
484 1pzn_A RAD51, DNA repair and r 94.3 0.022 7.6E-07 46.3 2.8 22 19-40 133-154 (349)
485 1sxj_D Activator 1 41 kDa subu 94.3 0.024 8.1E-07 45.6 3.0 22 19-40 60-81 (353)
486 3qf4_B Uncharacterized ABC tra 94.3 0.017 6E-07 50.4 2.2 22 19-40 383-404 (598)
487 1p5z_B DCK, deoxycytidine kina 94.3 0.019 6.5E-07 44.5 2.2 25 16-40 23-47 (263)
488 2v1u_A Cell division control p 94.3 0.021 7.3E-07 46.4 2.6 24 17-40 44-67 (387)
489 4a82_A Cystic fibrosis transme 94.3 0.015 5.3E-07 50.5 1.9 22 19-40 369-390 (578)
490 3j16_B RLI1P; ribosome recycli 94.3 0.025 8.6E-07 49.4 3.2 23 20-42 381-403 (608)
491 2qp9_X Vacuolar protein sortin 94.2 0.025 8.6E-07 46.0 2.9 23 18-40 85-107 (355)
492 2bjv_A PSP operon transcriptio 94.2 0.027 9.4E-07 43.5 3.0 24 18-41 30-53 (265)
493 3qf4_A ABC transporter, ATP-bi 94.2 0.02 6.7E-07 50.0 2.3 22 19-40 371-392 (587)
494 4b4t_I 26S protease regulatory 94.2 0.027 9.2E-07 47.0 3.0 24 17-40 216-239 (437)
495 1um8_A ATP-dependent CLP prote 94.2 0.027 9.1E-07 46.1 3.0 24 17-40 72-95 (376)
496 3pxg_A Negative regulator of g 94.2 0.024 8E-07 48.0 2.7 23 18-40 202-224 (468)
497 3foz_A TRNA delta(2)-isopenten 94.1 0.038 1.3E-06 44.1 3.7 22 18-39 11-32 (316)
498 2z4s_A Chromosomal replication 94.1 0.026 8.9E-07 47.3 2.9 23 18-40 131-153 (440)
499 3hws_A ATP-dependent CLP prote 94.1 0.028 9.5E-07 45.8 3.0 24 17-40 51-74 (363)
500 3d8b_A Fidgetin-like protein 1 94.1 0.03 1E-06 45.5 3.2 24 17-40 117-140 (357)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=4.7e-43 Score=270.43 Aligned_cols=177 Identities=34% Similarity=0.744 Sum_probs=146.6
Q ss_pred CCCCCCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027292 1 MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR 80 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 80 (225)
||++++++.|. +.+||+|+|++|||||||+++|+.+.+...+.+|.+.++....+..++..+.+.||||+|+++|.
T Consensus 1 ms~~~~~~~P~----k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~ 76 (216)
T 4dkx_A 1 MSTGGDFGNPL----RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR 76 (216)
T ss_dssp ----------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG
T ss_pred CCCCCCCCCCC----CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh
Confidence 77887777652 45899999999999999999999999999999999999999898889999999999999999999
Q ss_pred hhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec
Q 027292 81 AVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETS 160 (225)
Q Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (225)
.++..+++.+|++|+|||+++.++++.+..|+..+......+.|++||+||+|+.+.+.+..++++++++++++.|+++|
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~S 156 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETS 156 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEe
Confidence 99999999999999999999999999999999999888877899999999999998889999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 027292 161 ALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 161 a~~~~~v~~~f~~l~~~~~~~ 181 (225)
|++|.||+++|+.|++.+...
T Consensus 157 Aktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 157 AKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp TTTTBSHHHHHHHHHHHC---
T ss_pred CCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999887654
No 2
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=240.81 Aligned_cols=211 Identities=55% Similarity=0.913 Sum_probs=150.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.|..++..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 45788999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
+|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887766899999999999987677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCC--CCCC-CCCCCceee-cCCCCCCCCCCCCCCc
Q 027292 173 TVLTEIFNIVNKKNLTAGEGQG--NGNP-ASLSGKKIL-VPGPAQEIPAKSSMCC 223 (225)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-~~~~~~~~~~~~~~cc 223 (225)
+|++.+.+.....+.......+ ...+ ....++++. +....+.+++++++||
T Consensus 169 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 223 (223)
T 3cpj_B 169 ELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223 (223)
T ss_dssp HHHHHHTTCC------------------------CCBCC----------------
T ss_pred HHHHHHHHHhhhcccCchhcccccccccccccCCCcccccccccccccccCCCCC
Confidence 9999999887776665422111 1111 111233444 3322333456677898
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=4.4e-36 Score=229.78 Aligned_cols=176 Identities=47% Similarity=0.825 Sum_probs=161.3
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 35778999999999999999999999999988888888888888888888899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
+|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887766899999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccc
Q 027292 173 TVLTEIFNIVNKKNLT 188 (225)
Q Consensus 173 ~l~~~~~~~~~~~~~~ 188 (225)
+|.+.+.+........
T Consensus 164 ~l~~~i~~~~~~~~~~ 179 (206)
T 2bcg_Y 164 TMARQIKESMSQQNLN 179 (206)
T ss_dssp HHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999998877655443
No 4
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=221.69 Aligned_cols=181 Identities=48% Similarity=0.797 Sum_probs=161.2
Q ss_pred CCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Q 027292 5 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTS 84 (225)
Q Consensus 5 ~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 84 (225)
++|...+...+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++.
T Consensus 4 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 83 (196)
T 3tkl_A 4 GSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS 83 (196)
T ss_dssp -------CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHH
T ss_pred chhhhcCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHH
Confidence 34555566678899999999999999999999999999888889988899888888999999999999999999999999
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA 164 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (225)
.+++.+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++..++++++++||+++
T Consensus 84 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (196)
T 3tkl_A 84 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 163 (196)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTC
T ss_pred HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 99999999999999999999999999999998887778999999999999887888888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhc
Q 027292 165 TNVENAFMTVLTEIFNIVNKK 185 (225)
Q Consensus 165 ~~v~~~f~~l~~~~~~~~~~~ 185 (225)
.|++++|++|.+.+.++....
T Consensus 164 ~gv~~l~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIKKRMGPG 184 (196)
T ss_dssp TTHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHhccc
Confidence 999999999999998875543
No 5
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.1e-34 Score=218.01 Aligned_cols=179 Identities=49% Similarity=0.840 Sum_probs=159.2
Q ss_pred CCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh
Q 027292 6 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSA 85 (225)
Q Consensus 6 ~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 85 (225)
..+.++....+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..
T Consensus 10 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 89 (191)
T 2a5j_A 10 HSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRS 89 (191)
T ss_dssp CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHH
T ss_pred cccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHH
Confidence 34566677888999999999999999999999999988888888888888888888888999999999999999999999
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT 165 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (225)
+++.+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++..+++.++++||+++.
T Consensus 90 ~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 90 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTAC 169 (191)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999999999988776789999999999998767778888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 027292 166 NVENAFMTVLTEIFNIVNK 184 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~~~~ 184 (225)
|++++|++|++.+.+...+
T Consensus 170 gi~~l~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 170 NVEEAFINTAKEIYRKIQQ 188 (191)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 6
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.3e-34 Score=216.45 Aligned_cols=178 Identities=48% Similarity=0.805 Sum_probs=161.3
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
+..++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|
T Consensus 5 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 84 (186)
T 2bme_A 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 84 (186)
T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence 45678899999999999999999999999988888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 164 (186)
T 2bme_A 85 GALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAF 164 (186)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 99999999999999999999999888776789999999999998767778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccc
Q 027292 172 MTVLTEIFNIVNKKNLTA 189 (225)
Q Consensus 172 ~~l~~~~~~~~~~~~~~~ 189 (225)
+++.+.+.+.....+..+
T Consensus 165 ~~l~~~~~~~~~~~~~~~ 182 (186)
T 2bme_A 165 VQCARKILNKIESGELDP 182 (186)
T ss_dssp HHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHhhhcCCCc
Confidence 999999998877666544
No 7
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=6.1e-35 Score=223.29 Aligned_cols=174 Identities=37% Similarity=0.676 Sum_probs=153.0
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 35678999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEeccCCCCCH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-KEGLFFLETSALEATNV 167 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 167 (225)
+|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ +....+++..++. ..+++++++||++|.|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc-cccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999998877653 4789999999999984 5667777888887 66788999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 027292 168 ENAFMTVLTEIFNIVNKKNL 187 (225)
Q Consensus 168 ~~~f~~l~~~~~~~~~~~~~ 187 (225)
+++|++|.+.+.+.....+.
T Consensus 163 ~~l~~~l~~~~~~~~~~~~~ 182 (207)
T 1vg8_A 163 EQAFQTIARNALKQETEVEL 182 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccc
Confidence 99999999999887765543
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=220.43 Aligned_cols=177 Identities=50% Similarity=0.832 Sum_probs=148.1
Q ss_pred CCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh
Q 027292 6 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSA 85 (225)
Q Consensus 6 ~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 85 (225)
+.+.+++..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..
T Consensus 18 ~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 97 (201)
T 2hup_A 18 GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQS 97 (201)
T ss_dssp --------CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHH
T ss_pred CCCCcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHH
Confidence 44566677888999999999999999999999999888778888777887888888888899999999999999999999
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCC
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEA 164 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 164 (225)
+++.+|++|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+.+..+++++++...++ .++++||+++
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 177 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDS 177 (201)
T ss_dssp HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 999999999999999999999999999999887766899999999999987677888889999999999 8999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 165 ~~v~~~f~~l~~~~~~~~ 182 (225)
.|++++|++|++.+.+..
T Consensus 178 ~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 178 SNVEEAFLRVATELIMRH 195 (201)
T ss_dssp BSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999998653
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=6.8e-35 Score=218.92 Aligned_cols=174 Identities=45% Similarity=0.808 Sum_probs=130.1
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 35788999999999999999999999988877778888888887788888889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|++++|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF 163 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887666899999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 027292 173 TVLTEIFNIVNKKN 186 (225)
Q Consensus 173 ~l~~~~~~~~~~~~ 186 (225)
+|.+.+.+...+..
T Consensus 164 ~l~~~i~~~~~~~~ 177 (183)
T 2fu5_C 164 TLARDIKAKMDKNW 177 (183)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhccc
Confidence 99999988766544
No 10
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-34 Score=219.40 Aligned_cols=175 Identities=41% Similarity=0.766 Sum_probs=158.5
Q ss_pred CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA 90 (225)
Q Consensus 11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (225)
....+..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567889999999999999999999999998888888888888888888888999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA 170 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 170 (225)
|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL 179 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998877678999999999999876778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 027292 171 FMTVLTEIFNIVNKK 185 (225)
Q Consensus 171 f~~l~~~~~~~~~~~ 185 (225)
|++|++.+.+...+.
T Consensus 180 ~~~l~~~i~~~~~~~ 194 (201)
T 2ew1_A 180 FLDLACRLISEARQN 194 (201)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998875543
No 11
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=8.2e-34 Score=214.33 Aligned_cols=175 Identities=42% Similarity=0.761 Sum_probs=159.4
Q ss_pred CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292 9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR 88 (225)
Q Consensus 9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 88 (225)
..+...++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+...+..+.+.+|||||++.+..++..++.
T Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence 44556778999999999999999999999999988888888888888888888888999999999999999999999999
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE 168 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 168 (225)
.+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||++|.|++
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK 173 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999999999999999999999988776689999999999998767778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027292 169 NAFMTVLTEIFNIVN 183 (225)
Q Consensus 169 ~~f~~l~~~~~~~~~ 183 (225)
++|++|.+.+.+.++
T Consensus 174 ~l~~~l~~~i~~~~~ 188 (189)
T 2gf9_A 174 QVFERLVDVICEKMN 188 (189)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987653
No 12
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=6e-34 Score=217.50 Aligned_cols=170 Identities=32% Similarity=0.526 Sum_probs=150.9
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
+....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345679999999999999999999999988777777766554 3556678888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
+|+|||+++..+++.+..|+..+..... .+.|++||+||+|+.+.+.+..+++..++..++++++++||++|.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999887753 579999999999998767788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027292 172 MTVLTEIFNIVN 183 (225)
Q Consensus 172 ~~l~~~~~~~~~ 183 (225)
++|++.+.+...
T Consensus 169 ~~l~~~i~~~~~ 180 (206)
T 2bov_A 169 FDLMREIRARKM 180 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHccc
Confidence 999999987644
No 13
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.1e-34 Score=214.96 Aligned_cols=175 Identities=62% Similarity=1.010 Sum_probs=158.7
Q ss_pred CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 027292 10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89 (225)
Q Consensus 10 ~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 89 (225)
..+..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 97 (193)
T 2oil_A 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97 (193)
T ss_dssp --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 34456778999999999999999999999999888888888888888888888899999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN 169 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 169 (225)
+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...++.++++||+++.|+++
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999999887666899999999999987667788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 027292 170 AFMTVLTEIFNIVNK 184 (225)
Q Consensus 170 ~f~~l~~~~~~~~~~ 184 (225)
+|++|.+.+.+...+
T Consensus 178 l~~~l~~~i~~~~~~ 192 (193)
T 2oil_A 178 AFETVLKEIFAKVSK 192 (193)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999887653
No 14
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=212.46 Aligned_cols=174 Identities=46% Similarity=0.757 Sum_probs=156.6
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 45678999999999999999999999999988888888888888888888899999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
++|+|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+....++...++...+++++++||++|.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999887654 79999999999998877788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 027292 172 MTVLTEIFNIVNKKN 186 (225)
Q Consensus 172 ~~l~~~~~~~~~~~~ 186 (225)
++|.+.+.+...+..
T Consensus 163 ~~l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 163 NCITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999988876544
No 15
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=9.9e-34 Score=211.34 Aligned_cols=169 Identities=51% Similarity=0.899 Sum_probs=154.6
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
...++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34678899999999999999999999999988888888888888888888889999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||+++.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988876789999999999998767778888999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027292 172 MTVLTEIFN 180 (225)
Q Consensus 172 ~~l~~~~~~ 180 (225)
+++++.+.+
T Consensus 170 ~~l~~~i~~ 178 (179)
T 1z0f_A 170 LEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999988754
No 16
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2e-33 Score=214.37 Aligned_cols=172 Identities=38% Similarity=0.758 Sum_probs=158.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
.++.+||+|+|.+|||||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 46789999999999999999999999998888888888888888888888999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998877668999999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 027292 174 VLTEIFNIVNKK 185 (225)
Q Consensus 174 l~~~~~~~~~~~ 185 (225)
|.+.+.+.+...
T Consensus 165 l~~~i~~~~~~~ 176 (203)
T 1zbd_A 165 LVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999998877654
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.1e-33 Score=211.62 Aligned_cols=170 Identities=42% Similarity=0.753 Sum_probs=153.5
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
......++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34567899999999999999999999999988888888888888888888888999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988876789999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027292 172 MTVLTEIFNI 181 (225)
Q Consensus 172 ~~l~~~~~~~ 181 (225)
++|.+.+.+.
T Consensus 167 ~~l~~~~~~~ 176 (181)
T 2efe_B 167 YEIARRLPRV 176 (181)
T ss_dssp HHHHHTCC--
T ss_pred HHHHHHHHhc
Confidence 9998877554
No 18
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.9e-34 Score=216.87 Aligned_cols=177 Identities=49% Similarity=0.812 Sum_probs=150.1
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
+..+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 34567899999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++|
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988776789999999999998767778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccc
Q 027292 172 MTVLTEIFNIVNKKNLT 188 (225)
Q Consensus 172 ~~l~~~~~~~~~~~~~~ 188 (225)
++|++.+.+.....+..
T Consensus 180 ~~l~~~i~~~~~~~~~~ 196 (200)
T 2o52_A 180 LKCARTILNKIDSGELD 196 (200)
T ss_dssp HHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999887766544
No 19
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.2e-34 Score=214.77 Aligned_cols=174 Identities=37% Similarity=0.757 Sum_probs=148.4
Q ss_pred CCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 027292 8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYY 87 (225)
Q Consensus 8 ~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 87 (225)
+..+++.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++
T Consensus 17 ~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 96 (192)
T 2il1_A 17 RGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYY 96 (192)
T ss_dssp -----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHH
T ss_pred CCCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHh
Confidence 44556678899999999999999999999999988888888888888888888888899999999999999999999999
Q ss_pred cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEeccCCCCC
Q 027292 88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-GLFFLETSALEATN 166 (225)
Q Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 166 (225)
+.+|++|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+.+..++++.+++.. ++.++++||++|.|
T Consensus 97 ~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 97 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 99999999999999999999999999988877778999999999999876777888888888874 78899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEIFNI 181 (225)
Q Consensus 167 v~~~f~~l~~~~~~~ 181 (225)
++++|++|.+.+.+.
T Consensus 177 i~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 177 VDEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4e-33 Score=208.48 Aligned_cols=169 Identities=42% Similarity=0.713 Sum_probs=145.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
..+..++|+|+|.+|+|||||+++|.+..+. ..+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4578899999999999999999999998875 456777778877777778888999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...+++.++++++++||+++.|++++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988776789999999999998877788888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027292 172 MTVLTEIFNI 181 (225)
Q Consensus 172 ~~l~~~~~~~ 181 (225)
+++.+.+.+.
T Consensus 166 ~~l~~~~~~~ 175 (180)
T 2g6b_A 166 TAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 21
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-34 Score=217.93 Aligned_cols=173 Identities=42% Similarity=0.775 Sum_probs=158.6
Q ss_pred CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA 90 (225)
Q Consensus 11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (225)
+...++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 34466889999999999999999999999988888888888888888888888889999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA 170 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 170 (225)
|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+....++.+.++..++++++++||++|.|++++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999998877678999999999999877788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027292 171 FMTVLTEIFNIVN 183 (225)
Q Consensus 171 f~~l~~~~~~~~~ 183 (225)
|++|++.+.+...
T Consensus 177 ~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 177 FERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987643
No 22
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-33 Score=210.93 Aligned_cols=174 Identities=40% Similarity=0.733 Sum_probs=155.0
Q ss_pred CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292 9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR 88 (225)
Q Consensus 9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 88 (225)
.+.+.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (195)
T 1x3s_A 7 GMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR 86 (195)
T ss_dssp --CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred CcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc
Confidence 34445667899999999999999999999999988888888888888888888899999999999999999999999999
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.+..+++..++...+++++++||+++.|+
T Consensus 87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 87 GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGV 165 (195)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 99999999999999999999999999877653 5799999999999964 566778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027292 168 ENAFMTVLTEIFNIVN 183 (225)
Q Consensus 168 ~~~f~~l~~~~~~~~~ 183 (225)
+++|++|.+.+.+...
T Consensus 166 ~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 166 QCAFEELVEKIIQTPG 181 (195)
T ss_dssp HHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999876543
No 23
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=5.5e-33 Score=209.90 Aligned_cols=173 Identities=39% Similarity=0.710 Sum_probs=154.6
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeE-EEEEEECCE---------EEEEEEEeCCCchhhhhh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQ-TRTLVIQHK---------SVKAQIWDTAGQERYRAV 82 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~~~~~ 82 (225)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+|||||++.+..+
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 5678999999999999999999999999888778888777776 555555554 789999999999999999
Q ss_pred hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292 83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (225)
+..+++.+|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++...+++++++||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999887764 58999999999999876677888899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhc
Q 027292 162 LEATNVENAFMTVLTEIFNIVNKK 185 (225)
Q Consensus 162 ~~~~~v~~~f~~l~~~~~~~~~~~ 185 (225)
+++.|++++|++|.+.+.+...+.
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999998876543
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.3e-33 Score=209.05 Aligned_cols=167 Identities=38% Similarity=0.703 Sum_probs=145.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999988888888888888877888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999988776668999999999999876778888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 027292 174 VLTEIFN 180 (225)
Q Consensus 174 l~~~~~~ 180 (225)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988753
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=6.5e-33 Score=208.07 Aligned_cols=168 Identities=30% Similarity=0.470 Sum_probs=152.0
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 4456789999999999999999999999988888888877666 666778889999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccC-CCCCHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSAL-EATNVEN 169 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~ 169 (225)
++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.++..++++++++||+ ++.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 9999999999999999999999887654 3579999999999998878889999999999999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 027292 170 AFMTVLTEIFN 180 (225)
Q Consensus 170 ~f~~l~~~~~~ 180 (225)
+|++|.+.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 26
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=213.82 Aligned_cols=172 Identities=25% Similarity=0.358 Sum_probs=145.3
Q ss_pred CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh-hhHhhhc
Q 027292 10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA-VTSAYYR 88 (225)
Q Consensus 10 ~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~ 88 (225)
.+.+.+..++|+|+|++|||||||+++|.+......+.++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 95 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ 95 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence 334456789999999999999999999986555444555556666667777888999999999999988764 7788899
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
.+|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.++..++++++++||+++.|+
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 99999999999999999999999999877653 47999999999999877778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027292 168 ENAFMTVLTEIFNI 181 (225)
Q Consensus 168 ~~~f~~l~~~~~~~ 181 (225)
+++|+++++.+.+.
T Consensus 176 ~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 176 RELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=5.2e-33 Score=205.59 Aligned_cols=164 Identities=45% Similarity=0.772 Sum_probs=151.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999999888888888888888888888889999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999888766689999999999998767778888999999999999999999999999999999
Q ss_pred HHHH
Q 027292 175 LTEI 178 (225)
Q Consensus 175 ~~~~ 178 (225)
.+.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8754
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3e-33 Score=207.04 Aligned_cols=167 Identities=44% Similarity=0.794 Sum_probs=145.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999888888888888888777878888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||+++..+++.+..|+..+......+.|+++|+||+|+.+ +....+++..+++..+++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc-CccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999999888767899999999999943 5667888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027292 175 LTEIFNIV 182 (225)
Q Consensus 175 ~~~~~~~~ 182 (225)
.+.+.++.
T Consensus 160 ~~~~~~~~ 167 (170)
T 1g16_A 160 AKLIQEKI 167 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99887653
No 29
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-33 Score=212.45 Aligned_cols=171 Identities=42% Similarity=0.716 Sum_probs=152.8
Q ss_pred CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 027292 10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89 (225)
Q Consensus 10 ~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 89 (225)
+.+..+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 44567889999999999999999999999998877888888888888888888889999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN 169 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 169 (225)
+|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||+++.|+++
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE 175 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 99999999999999999999999999888766899999999999987667788889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 170 AFMTVLTEIFN 180 (225)
Q Consensus 170 ~f~~l~~~~~~ 180 (225)
+|++|.+.+.+
T Consensus 176 l~~~l~~~i~~ 186 (192)
T 2fg5_A 176 LFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.3e-32 Score=203.69 Aligned_cols=164 Identities=41% Similarity=0.717 Sum_probs=151.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
.+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+...+....+.+|||||.+.+..++..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 46799999999999999999999999988888888888888888888889999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988766789999999999998767778888999999999999999999999999999999
Q ss_pred HHHH
Q 027292 175 LTEI 178 (225)
Q Consensus 175 ~~~~ 178 (225)
.+.+
T Consensus 164 ~~~i 167 (170)
T 1z0j_A 164 SRRI 167 (170)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8765
No 31
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-32 Score=210.71 Aligned_cols=175 Identities=41% Similarity=0.771 Sum_probs=154.9
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
...+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++..+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34567899999999999999999999999888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
++|+|||+++..+++.+..|+..+......+.|+++|+||+|+. .+....++...++..++++++++||+++.|++++|
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 173 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988776689999999999994 35677788889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 027292 172 MTVLTEIFNIVNKKNL 187 (225)
Q Consensus 172 ~~l~~~~~~~~~~~~~ 187 (225)
++|.+.+.+.......
T Consensus 174 ~~l~~~~~~~~~~~~~ 189 (213)
T 3cph_A 174 FTLAKLIQEKIDSNKL 189 (213)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999999887754443
No 32
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=8.7e-33 Score=206.56 Aligned_cols=171 Identities=29% Similarity=0.492 Sum_probs=151.5
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
.+....++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 34567899999999999999999999999888777787766655 55667888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA 170 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 170 (225)
++++|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...++.++++||++|.|++++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999999999999998885443 458999999999999876778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027292 171 FMTVLTEIFNIVN 183 (225)
Q Consensus 171 f~~l~~~~~~~~~ 183 (225)
|++|.+.+.+...
T Consensus 163 ~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 163 FEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887643
No 33
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=9.6e-33 Score=204.18 Aligned_cols=163 Identities=42% Similarity=0.759 Sum_probs=149.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 36899999999999999999999999888888888888888888888899999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---CCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ---RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
|+|++++.+++.+..|+..+......+.|+++|+||+|+.+. +.+..++...++...+++++++||+++.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887678999999999999654 56778888899999999999999999999999999
Q ss_pred HHHHHH
Q 027292 173 TVLTEI 178 (225)
Q Consensus 173 ~l~~~~ 178 (225)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=7.4e-33 Score=207.40 Aligned_cols=168 Identities=29% Similarity=0.418 Sum_probs=150.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
....++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34689999999999999999999999888888888877766 66677888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
++|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 999999999999999999998876653 5799999999999988788899999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027292 173 TVLTEIFNIV 182 (225)
Q Consensus 173 ~l~~~~~~~~ 182 (225)
++++.+.+..
T Consensus 162 ~l~~~~~~~~ 171 (181)
T 3t5g_A 162 RIILEAEKMD 171 (181)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHhc
Confidence 9999887653
No 35
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.6e-33 Score=215.21 Aligned_cols=174 Identities=40% Similarity=0.708 Sum_probs=153.3
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE----------EEEEEEEeCCCchhhhhh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK----------SVKAQIWDTAGQERYRAV 82 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~~~ 82 (225)
..++.+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++. .+.+.+|||||++.+...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 4567899999999999999999999998887777777777777666666655 789999999999999999
Q ss_pred hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292 83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (225)
+..+++.+|++|+|||+++..+++.+..|+..+..... .+.|++||+||+|+.+.+.+..+++++++..++++++++||
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 99999999999999999999999999999888766553 57999999999999876777888899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcc
Q 027292 162 LEATNVENAFMTVLTEIFNIVNKKN 186 (225)
Q Consensus 162 ~~~~~v~~~f~~l~~~~~~~~~~~~ 186 (225)
+++.|++++|++|.+.+.+.+.+..
T Consensus 181 ~~g~gi~~l~~~l~~~i~~~~~~~~ 205 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMKRMEQCV 205 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999988766544
No 36
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=6.5e-33 Score=204.85 Aligned_cols=165 Identities=36% Similarity=0.641 Sum_probs=151.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+.+....++++.++...+++++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999887776 479999999999998766777888999999999999999999999999999999
Q ss_pred HHHHHH
Q 027292 175 LTEIFN 180 (225)
Q Consensus 175 ~~~~~~ 180 (225)
.+.+++
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988764
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.6e-32 Score=207.17 Aligned_cols=167 Identities=40% Similarity=0.711 Sum_probs=148.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh-hhhHhhhcCCCE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR-AVTSAYYRGAVG 92 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~ 92 (225)
....+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3467999999999999999999999999888888888888888888888889999999999999998 889999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC---CCHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA---TNVE 168 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v~ 168 (225)
+|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++ .++.
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999988776 468999999999999876778888899999999999999999999 9999
Q ss_pred HHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFN 180 (225)
Q Consensus 169 ~~f~~l~~~~~~ 180 (225)
++|++|++.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (189)
T 1z06_A 177 AIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHHHHHhh
Confidence 999999887643
No 38
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1e-32 Score=204.23 Aligned_cols=165 Identities=26% Similarity=0.384 Sum_probs=134.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh-hhHhhhcCCCEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA-VTSAYYRGAVGAML 95 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i~ 95 (225)
.+||+|+|++|||||||+++|.+......+.++.+.+.....+..++..+.+.+|||||++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 68999999999999999999998877777767767778888888899999999999999998876 67778889999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999887664 479999999999998777888999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027292 175 LTEIFNI 181 (225)
Q Consensus 175 ~~~~~~~ 181 (225)
++.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
No 39
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.1e-32 Score=205.56 Aligned_cols=166 Identities=36% Similarity=0.714 Sum_probs=151.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999999888888888888888888888889999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999888776689999999999998777778888899999999999999999999999999999
Q ss_pred HHHHHH
Q 027292 175 LTEIFN 180 (225)
Q Consensus 175 ~~~~~~ 180 (225)
.+.+.+
T Consensus 172 ~~~~~~ 177 (179)
T 2y8e_A 172 AAALPG 177 (179)
T ss_dssp HHTCC-
T ss_pred HHHHhh
Confidence 876543
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=5.4e-32 Score=201.79 Aligned_cols=167 Identities=37% Similarity=0.676 Sum_probs=147.3
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
.....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35678999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEeccCCCCCH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-KEGLFFLETSALEATNV 167 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 167 (225)
+++|||+++..+++.+..|+..+..... .+.|+++|+||+|+. .+....+++..++. ..+++++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999999877654 578999999999998 35677888888887 56788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 168 ENAFMTVLTEIFN 180 (225)
Q Consensus 168 ~~~f~~l~~~~~~ 180 (225)
+++|+++++.+++
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 41
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=202.37 Aligned_cols=169 Identities=28% Similarity=0.374 Sum_probs=137.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--hhhhhHhhhcCCCE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--YRAVTSAYYRGAVG 92 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~ 92 (225)
.+.++|+|+|++|||||||+++|.+..+...+. +.+.++....+.+++..+.+.+|||||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 357999999999999999999999987765543 456666677777888899999999999987 56677788999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887753 3479999999999998777788888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027292 172 MTVLTEIFNIVNK 184 (225)
Q Consensus 172 ~~l~~~~~~~~~~ 184 (225)
++|.+.+.+....
T Consensus 161 ~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 161 EGVVRQLRLRRRD 173 (175)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcc
Confidence 9999998776543
No 42
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.5e-33 Score=210.84 Aligned_cols=168 Identities=38% Similarity=0.700 Sum_probs=139.9
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34567999999999999999999999998877788888888888888888999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC------CCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE------EQRAVPTEDAKEFAQKEGLFFLETSALEATN 166 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (225)
+|+|||+++..+++.+..|+..+......+.|++||+||+|+. ..+.+..+++..++...+++++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999999888776689999999999995 3466778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEIFN 180 (225)
Q Consensus 167 v~~~f~~l~~~~~~ 180 (225)
++++|++|++.+.+
T Consensus 184 v~el~~~l~~~i~~ 197 (199)
T 2p5s_A 184 IVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 43
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.3e-33 Score=215.56 Aligned_cols=170 Identities=29% Similarity=0.549 Sum_probs=142.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|..++..+++.+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999988777777776554 345567778899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC--------CCCHHHHHHHHHHcCC-eEEEeccCCC
Q 027292 95 LVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQR--------AVPTEDAKEFAQKEGL-FFLETSALEA 164 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 164 (225)
+|||++++.+++.+. .|+..+..... +.|++||+||+|+.+.+ .+..+++..++..+++ +++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999986 89999887754 89999999999996543 2367788889999996 8999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcc
Q 027292 165 TNVENAFMTVLTEIFNIVNKKN 186 (225)
Q Consensus 165 ~~v~~~f~~l~~~~~~~~~~~~ 186 (225)
.|++++|++|++.+.+...+++
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~~~ 186 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRRKE 186 (212)
T ss_dssp TTHHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHHHhhhhhhcc
Confidence 9999999999999887654433
No 44
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3.2e-32 Score=204.50 Aligned_cols=170 Identities=32% Similarity=0.526 Sum_probs=149.0
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
.....+||+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 345679999999999999999999999888777777765554 3455677888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
+|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+....+++.++++.++++++++||+++.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999999887764 479999999999998767778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027292 172 MTVLTEIFNIVN 183 (225)
Q Consensus 172 ~~l~~~~~~~~~ 183 (225)
++|.+.+.++..
T Consensus 173 ~~l~~~i~~~~~ 184 (187)
T 2a9k_A 173 FDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999987643
No 45
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=9.7e-33 Score=208.34 Aligned_cols=167 Identities=26% Similarity=0.434 Sum_probs=142.6
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
......+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..+ ..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3456789999999999999999999999988888888877665 345667888999999999999988875 67899999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEecc-CCCCCH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSA-LEATNV 167 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~v 167 (225)
++|+|||+++..+++.+..|+..+..... .+.|++||+||+|+.+.+.+..+++.++++.++++++++|| +++.|+
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 99999999999999999999999877642 48999999999999877778889999999999999999999 899999
Q ss_pred HHHHHHHHHHHHH
Q 027292 168 ENAFMTVLTEIFN 180 (225)
Q Consensus 168 ~~~f~~l~~~~~~ 180 (225)
+++|++|++.+.+
T Consensus 174 ~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 174 QHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 46
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.6e-32 Score=204.19 Aligned_cols=167 Identities=18% Similarity=0.315 Sum_probs=143.6
Q ss_pred CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 027292 10 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG 89 (225)
Q Consensus 10 ~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 89 (225)
........+||+|+|++|||||||+++|+++.+...+.++ . ..+...+.+++..+.+.+|||+|++.+. +++.
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~ 85 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-G-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW 85 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-C-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-c-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence 3344567899999999999999999999999988777776 3 3344677788999999999999998876 6778
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHHcC-CeEEEeccCCCC
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLE--EQRAVPTEDAKEFAQKEG-LFFLETSALEAT 165 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 165 (225)
+|++++|||+++..+++.+..|+..+..... .+.|++||+||+|+. ..+.+..+++.+++..++ +.|+++||++|.
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 9999999999999999999999999987754 579999999999994 456788889999999997 889999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 027292 166 NVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~~~ 183 (225)
|++++|+++++.+.+.++
T Consensus 166 gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 166 NVERVFQDVAQKVVALRK 183 (184)
T ss_dssp THHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999987754
No 47
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=209.14 Aligned_cols=164 Identities=27% Similarity=0.389 Sum_probs=142.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|.+|||||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45699999999999999999999998887777777654443 44556788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ +....+++..++..+++.++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999889888776543 3789999999999976 56677888889999999999999999999999999
Q ss_pred HHHHHHHH
Q 027292 173 TVLTEIFN 180 (225)
Q Consensus 173 ~l~~~~~~ 180 (225)
+|++.+.+
T Consensus 164 ~l~~~~~~ 171 (199)
T 2gf0_A 164 ELLTLETR 171 (199)
T ss_dssp HHHHHCSS
T ss_pred HHHHHHhh
Confidence 99886643
No 48
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.7e-32 Score=208.88 Aligned_cols=170 Identities=28% Similarity=0.345 Sum_probs=140.4
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-YRAVTSAYYRG 89 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 89 (225)
+.....+||+|+|.+|||||||+++|++.... ....++++.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 45567899999999999999999999975432 12233456666677777888999999999999877 55667778889
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE 168 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 168 (225)
+|++|+|||+++..+++.+..|+..+.... ..+.|++||+||+|+.+.+.+..++.+.++..++++|+++||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999998887643 3479999999999998767778888888888999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFNI 181 (225)
Q Consensus 169 ~~f~~l~~~~~~~ 181 (225)
++|++|++.+...
T Consensus 192 elf~~l~~~i~~~ 204 (211)
T 2g3y_A 192 ELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 49
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=6.7e-33 Score=206.89 Aligned_cols=167 Identities=34% Similarity=0.534 Sum_probs=147.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-KSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+..++..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4579999999999999999999999888766777777777777777766 678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHAD--KNIV-IILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA 170 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 170 (225)
|+|||++++.+++.+..|+..+..... .+.| +++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 999999999999999999998877532 2345 8999999999876777888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 171 FMTVLTEIFNI 181 (225)
Q Consensus 171 f~~l~~~~~~~ 181 (225)
|++|.+.+.+.
T Consensus 164 ~~~l~~~~~~~ 174 (178)
T 2hxs_A 164 FQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhh
Confidence 99999887544
No 50
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.6e-32 Score=211.59 Aligned_cols=169 Identities=26% Similarity=0.449 Sum_probs=145.6
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
.....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 445679999999999999999999999999888888877665 3455667788999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEE
Q 027292 93 AMLVYDISRRQSFDH-IPRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLE 158 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~ 158 (225)
+|+|||+++..+++. +..|+..+..... +.|++||+||+|+.+. +.+..+++..+++.+++ +|++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 6899999988764 8999999999999753 67888999999999999 8999
Q ss_pred eccCCCCC-HHHHHHHHHHHHHHHHh
Q 027292 159 TSALEATN-VENAFMTVLTEIFNIVN 183 (225)
Q Consensus 159 ~Sa~~~~~-v~~~f~~l~~~~~~~~~ 183 (225)
+||++|.| ++++|+++++.+.+...
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred eccCCCcccHHHHHHHHHHHHhccCc
Confidence 99999998 99999999999876543
No 51
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.8e-33 Score=210.49 Aligned_cols=169 Identities=28% Similarity=0.482 Sum_probs=144.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
....+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34689999999999999999999999998888888877666 45555667788999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFM 172 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~ 172 (225)
|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999877643 4789999999999987788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027292 173 TVLTEIFNIVN 183 (225)
Q Consensus 173 ~l~~~~~~~~~ 183 (225)
+|++.+.+...
T Consensus 180 ~l~~~i~~~~~ 190 (201)
T 3oes_A 180 KVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhhhh
Confidence 99999987643
No 52
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.1e-31 Score=200.44 Aligned_cols=169 Identities=33% Similarity=0.548 Sum_probs=146.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|||||||+++|.+..+...+.++.+ +.....+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999888777776654 444456667888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ +....+.+..++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887653 5799999999999985 566788899999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 027292 174 VLTEIFNIVNKK 185 (225)
Q Consensus 174 l~~~~~~~~~~~ 185 (225)
|.+.+.+...+.
T Consensus 160 l~~~~~~~~~~~ 171 (189)
T 4dsu_A 160 LVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhc
Confidence 999998876654
No 53
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=8.8e-33 Score=211.19 Aligned_cols=171 Identities=30% Similarity=0.515 Sum_probs=115.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--cCCCCCCCcceeeeEEEEEEECCE--EEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARN--EFSLDSKATIGVEFQTRTLVIQHK--SVKAQIWDTAGQERYRAVTSAYYRGA 90 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (225)
...++|+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+|||||++.+..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999998 776677777776777777777776 89999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHHHcCCeEEEeccCC-CC
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEE-QRAVPTEDAKEFAQKEGLFFLETSALE-AT 165 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 165 (225)
|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..+++.++++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988766 6899999999999987 677888899999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhhc
Q 027292 166 NVENAFMTVLTEIFNIVNKK 185 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~~~~~ 185 (225)
|++++|++|.+.+.+...+.
T Consensus 178 gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998776644
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.6e-31 Score=203.40 Aligned_cols=165 Identities=37% Similarity=0.691 Sum_probs=146.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEE-----------------------------
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS----------------------------- 65 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 65 (225)
+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999999888888888877777777666544
Q ss_pred --------EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292 66 --------VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ 137 (225)
Q Consensus 66 --------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (225)
..+.+|||||++.+..++..+++.+|++|+|||++++.+++.+..|+..+..... .|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence 8899999999999999999999999999999999999999999999999877654 89999999999 444
Q ss_pred CCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292 138 RAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~ 182 (225)
+....+++++++...+++++++||+++.|++++|++|.+.+.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 677888899999999999999999999999999999999988754
No 55
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=7.7e-32 Score=204.28 Aligned_cols=167 Identities=27% Similarity=0.507 Sum_probs=147.7
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
.....+||+|+|.+|+|||||+++|.+..+...+.++.+..+.. .+..++..+.+.+|||||++.+..++..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 45678999999999999999999999999887888887666553 56678889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC--CCCCHHHHHHHHHHcCCe-EEEeccCCCCCHH
Q 027292 93 AMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ--RAVPTEDAKEFAQKEGLF-FLETSALEATNVE 168 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 168 (225)
+|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. +.+..+++.++++.+++. ++++||++|.|++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 9999999999999997 778888876654 7999999999999753 667888999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFNI 181 (225)
Q Consensus 169 ~~f~~l~~~~~~~ 181 (225)
++|++|++.+.+.
T Consensus 177 ~l~~~l~~~i~~~ 189 (194)
T 3reg_A 177 EVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=3.1e-32 Score=203.73 Aligned_cols=170 Identities=36% Similarity=0.665 Sum_probs=135.7
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..+ +..+.+.+|||||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 35678999999999999999999999998888888888888877777766 56789999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEeccCCCC
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHAD----KNIVIILIGNKSDLEE-QRAVPTEDAKEFAQ-KEGLFFLETSALEAT 165 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 165 (225)
++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..++. ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999998877653 5799999999999953 34567788888887 567889999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTEIFNIV 182 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~~ 182 (225)
|++++|++|.+.+++..
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQN 180 (182)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 57
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=7e-32 Score=205.52 Aligned_cols=171 Identities=27% Similarity=0.484 Sum_probs=139.7
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
......++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 4466789999999999999999999999887777777765444 445667888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEE
Q 027292 92 GAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEGL-FFL 157 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~ 157 (225)
++|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+ .+.+..+++..++..+++ +++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 999999999999999986 79998887755 899999999999965 356778888999999887 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHHHhh
Q 027292 158 ETSALEATNVENAFMTVLTEIFNIVNK 184 (225)
Q Consensus 158 ~~Sa~~~~~v~~~f~~l~~~~~~~~~~ 184 (225)
++||++|.|++++|++|++.+++...+
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHHhccccc
Confidence 999999999999999999999877543
No 58
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=7.3e-32 Score=198.91 Aligned_cols=164 Identities=34% Similarity=0.566 Sum_probs=143.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 368999999999999999999999988777777765554 3455678888999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+....+++..++..++++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999999887764 579999999999998767788888999999999999999999999999999999
Q ss_pred HHHHHH
Q 027292 175 LTEIFN 180 (225)
Q Consensus 175 ~~~~~~ 180 (225)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998753
No 59
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-31 Score=203.29 Aligned_cols=165 Identities=25% Similarity=0.471 Sum_probs=145.3
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVG 92 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (225)
+....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 456789999999999999999999999988777777766554 3455667788999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEE
Q 027292 93 AMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLE 158 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~ 158 (225)
+|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+. +.+..+++..+++.+++ .+++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 99999999999999987 79998887654 7999999999999753 46778889999999998 8999
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q 027292 159 TSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 159 ~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
+||++|.|++++|++|++.++
T Consensus 172 ~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998876
No 60
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=7.4e-32 Score=199.01 Aligned_cols=163 Identities=28% Similarity=0.390 Sum_probs=123.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.+||+|+|++|||||||+++|.+...... .++.+.++ ...+..++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 68999999999999999999987665433 33334444 35567788999999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999999887764 35799999999999988788888999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027292 176 TEIFNI 181 (225)
Q Consensus 176 ~~~~~~ 181 (225)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988765
No 61
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=6.9e-32 Score=199.11 Aligned_cols=162 Identities=29% Similarity=0.516 Sum_probs=143.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.++|+|+|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999887777777665543 4556677889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-GLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.+ +++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 99999999999999998887764 358999999999999877777888899999887 7899999999999999999999
Q ss_pred HHHHH
Q 027292 175 LTEIF 179 (225)
Q Consensus 175 ~~~~~ 179 (225)
.+.+.
T Consensus 162 ~~~i~ 166 (167)
T 1c1y_A 162 VRQIN 166 (167)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98763
No 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.3e-31 Score=198.73 Aligned_cols=165 Identities=18% Similarity=0.333 Sum_probs=138.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...+||+|+|++|||||||+++|.++.+.. +.++.+.. ....+.+++..+.+.+|||||++. ..+++.+|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 357999999999999999999999998876 66665544 356667788899999999999876 45778899999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc---CCCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA---DKNIVIILIGNKSDLE--EQRAVPTEDAKEFAQKE-GLFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~ 168 (225)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..+++.+++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999999876665543 2579999999999994 45667888888888876 6889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 027292 169 NAFMTVLTEIFNIVNKKN 186 (225)
Q Consensus 169 ~~f~~l~~~~~~~~~~~~ 186 (225)
++|+++++.+.+......
T Consensus 158 ~lf~~l~~~~~~~~~~~~ 175 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQQQ 175 (178)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999988766543
No 63
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.4e-31 Score=197.25 Aligned_cols=163 Identities=29% Similarity=0.497 Sum_probs=145.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988777777765433 56667788889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
||+++..+++.+..|+..+..... .+.|+++|+||+|+.+.+....++...++..++++++++||++|.|++++|++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 999999999999999988877653 5799999999999987677788888999999999999999999999999999999
Q ss_pred HHHHH
Q 027292 176 TEIFN 180 (225)
Q Consensus 176 ~~~~~ 180 (225)
+.+.+
T Consensus 162 ~~~~~ 166 (167)
T 1kao_A 162 RQMNY 166 (167)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88754
No 64
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.7e-35 Score=221.56 Aligned_cols=178 Identities=48% Similarity=0.805 Sum_probs=146.5
Q ss_pred CCCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 027292 4 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVT 83 (225)
Q Consensus 4 ~~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 83 (225)
|..|...+...+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+..++
T Consensus 20 G~pm~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 99 (199)
T 3l0i_B 20 GRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 99 (199)
T ss_dssp -----CC-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS
T ss_pred CCcccccCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH
Confidence 44566666667889999999999999999999999988888878888888888888888999999999999999999999
Q ss_pred HhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292 84 SAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE 163 (225)
Q Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (225)
..+++.+|++|+|||+++..+++.+..|+..+......+.|++||+||+|+.+.+.+..+++..++..++++++++||++
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~ 179 (199)
T 3l0i_B 100 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 179 (199)
T ss_dssp CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC--
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCC
Confidence 99999999999999999999999999999999887777899999999999987666776778889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~~~~ 181 (225)
+.|++++|++|.+.+.++
T Consensus 180 g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 180 ATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp -HHHHHHHHHHTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999998776543
No 65
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-31 Score=201.56 Aligned_cols=166 Identities=31% Similarity=0.462 Sum_probs=147.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..++..+|++|
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4579999999999999999999999988888888776554 44566788899999999999888 777888999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC-CHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT-NVENAFM 172 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~f~ 172 (225)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||+++. |++++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 99999999999999999998877653 589999999999998767788888999999999999999999999 9999999
Q ss_pred HHHHHHHHHH
Q 027292 173 TVLTEIFNIV 182 (225)
Q Consensus 173 ~l~~~~~~~~ 182 (225)
+|++.+.+..
T Consensus 184 ~l~~~i~~~~ 193 (196)
T 2atv_A 184 ELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999988754
No 66
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-31 Score=205.14 Aligned_cols=167 Identities=28% Similarity=0.514 Sum_probs=143.8
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
...+..+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.|..++..+++.+|
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 3456789999999999999999999999998877777776655 345566778899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEE
Q 027292 92 GAMLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEE------------QRAVPTEDAKEFAQKEG-LFFL 157 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~ 157 (225)
++|+|||+++..+++.+ ..|+..+..... +.|+++|+||+|+.+ .+.+..+++..+++.++ +.|+
T Consensus 102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 180 (205)
T 1gwn_A 102 AVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI 180 (205)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE
Confidence 99999999999999998 789988877654 799999999999974 25677888999999888 6899
Q ss_pred EeccC-CCCCHHHHHHHHHHHHHH
Q 027292 158 ETSAL-EATNVENAFMTVLTEIFN 180 (225)
Q Consensus 158 ~~Sa~-~~~~v~~~f~~l~~~~~~ 180 (225)
++||+ ++.|++++|++|++.+++
T Consensus 181 e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 181 ECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHHHHhh
Confidence 99999 689999999999998875
No 67
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.7e-31 Score=200.83 Aligned_cols=165 Identities=27% Similarity=0.511 Sum_probs=143.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
....++|+|+|++|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.|..++..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 456799999999999999999999999888777777765553 4566677889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEe
Q 027292 94 MLVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEG-LFFLET 159 (225)
Q Consensus 94 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 159 (225)
|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. +.+..+++..+++.++ ++|+++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 789988877654 7999999999999742 5677888999999888 689999
Q ss_pred ccC-CCCCHHHHHHHHHHHHHH
Q 027292 160 SAL-EATNVENAFMTVLTEIFN 180 (225)
Q Consensus 160 Sa~-~~~~v~~~f~~l~~~~~~ 180 (225)
||+ ++.|++++|+++++.+++
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999998764
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.98 E-value=1.8e-30 Score=195.89 Aligned_cols=168 Identities=35% Similarity=0.540 Sum_probs=136.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
-..++|+|+|.+|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 3569999999999999999999999888777766655443 455667788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ +....++++++++.++++++++||+++.|++++|++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998877654 5799999999999986 566788899999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 027292 174 VLTEIFNIVNK 184 (225)
Q Consensus 174 l~~~~~~~~~~ 184 (225)
|.+.+.+.+.+
T Consensus 177 l~~~~~~~~~~ 187 (190)
T 3con_A 177 LVREIRQYRMK 187 (190)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99998876443
No 69
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=3.9e-31 Score=198.48 Aligned_cols=164 Identities=27% Similarity=0.512 Sum_probs=143.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 579999999999999999999999888777777765444 4456678889999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEecc
Q 027292 96 VYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSA 161 (225)
Q Consensus 96 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa 161 (225)
|||+++..+++.+. .|+..+..... +.|+++|+||+|+.+. +.+..++...+++..++ +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999986 79988887655 8999999999999653 46677888899999997 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 027292 162 LEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 162 ~~~~~v~~~f~~l~~~~~~~ 181 (225)
++|.|++++|+++.+.+++.
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCC
T ss_pred CCccCHHHHHHHHHHHHhcc
Confidence 99999999999999887643
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.98 E-value=1.7e-30 Score=198.11 Aligned_cols=164 Identities=27% Similarity=0.486 Sum_probs=144.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+.. .+..++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 467999999999999999999999998887777777666553 4667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEec
Q 027292 95 LVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETS 160 (225)
Q Consensus 95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 160 (225)
+|||+++..+++.+ ..|+..+..... +.|+++|+||+|+.+. +.+..+++..++...++ .++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 678888877654 7999999999999764 45777888899999998 799999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027292 161 ALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 161 a~~~~~v~~~f~~l~~~~~~ 180 (225)
|++|.|++++|++|.+.+++
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.98 E-value=3.8e-31 Score=203.77 Aligned_cols=167 Identities=31% Similarity=0.510 Sum_probs=125.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|.+|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999888777777654443 455667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEec
Q 027292 95 LVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETS 160 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 160 (225)
+|||+++..+++.+. .|+..+..... +.|++||+||+|+... +.+..+++..+++.+++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 79988877654 7999999999999764 35677888999999997 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Q 027292 161 ALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 161 a~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
|++|.|++++|++|++.+++...
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999987643
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=1.1e-31 Score=207.06 Aligned_cols=172 Identities=26% Similarity=0.484 Sum_probs=148.1
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
.....+||+|+|.+|||||||+++|+++.+...+.++.+........... +..+.+.+|||||++.+..++..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 45678999999999999999999999988877777777777776666544 34588999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 92 GAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999988877779999999999998777788888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027292 172 MTVLTEIFNIVNK 184 (225)
Q Consensus 172 ~~l~~~~~~~~~~ 184 (225)
++|.+.+.+....
T Consensus 167 ~~l~~~~~~~~~~ 179 (218)
T 4djt_A 167 LHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHHHCCTTC
T ss_pred HHHHHHHhccccc
Confidence 9999998766543
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=8.4e-31 Score=194.05 Aligned_cols=162 Identities=27% Similarity=0.407 Sum_probs=141.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..++|+|+|.+|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..++..+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999998887777776654443 345567788899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
|||++++.+++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999999888877643 47899999999999876777888888899999999999999999999999999
Q ss_pred HHHHH
Q 027292 174 VLTEI 178 (225)
Q Consensus 174 l~~~~ 178 (225)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98754
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=3.2e-30 Score=189.54 Aligned_cols=162 Identities=34% Similarity=0.589 Sum_probs=142.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEE
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 96 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (225)
.++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 47999999999999999999999888777766655443 45566778889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027292 97 YDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ +....++.+++++.++++++++||+++.|++++|+++.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877654 4799999999999986 56677888999999999999999999999999999999
Q ss_pred HHHHH
Q 027292 176 TEIFN 180 (225)
Q Consensus 176 ~~~~~ 180 (225)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88753
No 75
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=1.1e-31 Score=203.74 Aligned_cols=175 Identities=18% Similarity=0.281 Sum_probs=130.8
Q ss_pred CCCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 027292 4 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSL-DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV 82 (225)
Q Consensus 4 ~~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 82 (225)
+.....+..+....++|+|+|.+|||||||+++|++..+.. .+.++.+.... .+ +...+.+.+|||||++.+..+
T Consensus 4 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~ 79 (199)
T 4bas_A 4 SHHHHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGL 79 (199)
T ss_dssp ------------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGG
T ss_pred cccccccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHH
Confidence 34445556677889999999999999999999999999887 67777664333 22 345678999999999999999
Q ss_pred hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCCCCCCCHHHHHH-H-----
Q 027292 83 TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD--------KNIVIILIGNKSDLEEQRAVPTEDAKE-F----- 148 (225)
Q Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~piilv~nK~Dl~~~~~~~~~~~~~-~----- 148 (225)
+..+++.+|++|+|||+++..+++.+..|+..+..... .+.|++||+||+|+.+.. ..+++.. +
T Consensus 80 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~ 157 (199)
T 4bas_A 80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTL 157 (199)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHH
T ss_pred HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhh
Confidence 99999999999999999999999999999888765522 278999999999997642 2222222 1
Q ss_pred HHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q 027292 149 AQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184 (225)
Q Consensus 149 ~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~ 184 (225)
++..++.++++||+++.|++++|++|.+.+.+...+
T Consensus 158 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 158 MGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp HTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred ccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 134677899999999999999999999999877543
No 76
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=8.7e-30 Score=193.89 Aligned_cols=175 Identities=65% Similarity=1.079 Sum_probs=153.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+|+++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 56899999999999999999999999888888888888888888888999999999999999999988899999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTV 174 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l 174 (225)
+|+|+.+..+++.+..|+..+......+.|+++++||+|+.+.+....++++.++...++.++++|++++.+++++|+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999899988876655578999999999998766777888999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccc
Q 027292 175 LTEIFNIVNKKNLTA 189 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~ 189 (225)
.+.+.+...+.....
T Consensus 163 ~~~~~~~~~~~~~~~ 177 (199)
T 2f9l_A 163 LTEIYRIVSQKQIAD 177 (199)
T ss_dssp HHHHHHHHHTSCCC-
T ss_pred HHHHHHHHhhccCCc
Confidence 999988776555433
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=3e-31 Score=205.12 Aligned_cols=170 Identities=29% Similarity=0.562 Sum_probs=150.5
Q ss_pred CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA 90 (225)
Q Consensus 11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (225)
.......+||+|+|.+|||||||+++|+.+.+...+.++.+.+........++..+.+.+|||||++.+..++..+++.+
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34566789999999999999999999888877777778888888888888899999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENA 170 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 170 (225)
|++|+|||+++..+++.+..|+..+..... +.|+++|+||+|+.+... . .+...++...++.++++||++|.|++++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999988764 799999999999976432 2 3566778888999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027292 171 FMTVLTEIFNIVN 183 (225)
Q Consensus 171 f~~l~~~~~~~~~ 183 (225)
|++|.+.+.....
T Consensus 166 ~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 166 FLWLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHHHTCTT
T ss_pred HHHHHHHHHhCcc
Confidence 9999999876644
No 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=2e-31 Score=201.94 Aligned_cols=168 Identities=23% Similarity=0.293 Sum_probs=137.0
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-----------CCcceeeeEEEEE-EECCEEEEEEEEeCCCchhhh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDS-----------KATIGVEFQTRTL-VIQHKSVKAQIWDTAGQERYR 80 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~ 80 (225)
..+..+||+|+|++|||||||++.+.+ .+...+ .++.+.++....+ ..++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 456789999999999999999976654 333332 2344444444333 456678899999999999999
Q ss_pred hhhHhhhcCCCEEEEEEeCC------ChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027292 81 AVTSAYYRGAVGAMLVYDIS------RRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL 154 (225)
Q Consensus 81 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 154 (225)
.++..+++.+|++|+|||++ +.++++.+..|+..+.. ...+.|+++|+||+|+.+ ....+++++++..+++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence 99999999999999999999 56677778888877732 335899999999999976 3678889999999999
Q ss_pred -eEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q 027292 155 -FFLETSALEATNVENAFMTVLTEIFNIVNK 184 (225)
Q Consensus 155 -~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~ 184 (225)
+++++||++|.|++++|++|.+.+.++..+
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999887653
No 79
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.6e-30 Score=196.61 Aligned_cols=165 Identities=28% Similarity=0.471 Sum_probs=138.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...+||+|+|.+|||||||+++|.+..+...+.++.+..+.. .+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 346899999999999999999999998887777776655543 3667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEec
Q 027292 95 LVYDISRRQSFDHI-PRWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETS 160 (225)
Q Consensus 95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 160 (225)
+|||+++..+++.+ ..|+..+..... +.|+++|+||+|+.+. +.+..++...++...++ .++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999988 678888877654 7999999999999754 45677788889999988 799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 027292 161 ALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 161 a~~~~~v~~~f~~l~~~~~~~ 181 (225)
|++|.|++++|++|.+.+++.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=4.3e-30 Score=194.70 Aligned_cols=168 Identities=28% Similarity=0.354 Sum_probs=137.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcCCCE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-YRAVTSAYYRGAVG 92 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ 92 (225)
...+||+|+|++|||||||+++|.+.... ....++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 45799999999999999999999964321 12223455666667777888999999999999776 55667778889999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027292 93 AMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
+|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++|+++||++|.|++++|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence 999999999999999999998887653 3479999999999997666777788888888899999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 172 MTVLTEIFNIV 182 (225)
Q Consensus 172 ~~l~~~~~~~~ 182 (225)
+++++.+....
T Consensus 164 ~~l~~~~~~~~ 174 (192)
T 2cjw_A 164 EGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999886554
No 81
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=2.7e-31 Score=198.82 Aligned_cols=163 Identities=29% Similarity=0.559 Sum_probs=126.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...+||+|+|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 35689999999999999999999998877777666554432 22334566778889999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCC----------CCHHHHHHHHHHcCC-eEEEeccC
Q 027292 95 LVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQRA----------VPTEDAKEFAQKEGL-FFLETSAL 162 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 162 (225)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+. +..+++.+++..+++ +++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999987 79998887754 899999999999965432 467788889999996 89999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLTEIF 179 (225)
Q Consensus 163 ~~~~v~~~f~~l~~~~~ 179 (225)
+|.|++++|+++++.++
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=2.9e-30 Score=197.34 Aligned_cols=162 Identities=27% Similarity=0.510 Sum_probs=138.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...+||+|+|.+|||||||+++|..+.+...+.++.+ +.....+..++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4579999999999999999999999888777777754 344455667778889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCCe-EEEec
Q 027292 95 LVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQR------------AVPTEDAKEFAQKEGLF-FLETS 160 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~S 160 (225)
+|||+++..+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++..+++..++. ++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999986 7998888776 489999999999996532 36778888999999864 99999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 027292 161 ALEATNVENAFMTVLTEI 178 (225)
Q Consensus 161 a~~~~~v~~~f~~l~~~~ 178 (225)
|++|.|++++|+++++.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 83
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=7.8e-29 Score=187.56 Aligned_cols=171 Identities=66% Similarity=1.091 Sum_probs=151.6
Q ss_pred CCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 027292 8 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYY 87 (225)
Q Consensus 8 ~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 87 (225)
+......+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..++
T Consensus 20 ~~~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~ 99 (191)
T 1oix_A 20 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY 99 (191)
T ss_dssp ----CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHH
T ss_pred CCcccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHh
Confidence 34444567889999999999999999999999998888889988888888888999999999999999999988888899
Q ss_pred cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
..++++++|+|..+..+++.+..|+..+......+.|+++++||+|+.+......++++.++...++.++++|++++.++
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNV 179 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999888998877665557899999999999876667788899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 168 ENAFMTVLTEI 178 (225)
Q Consensus 168 ~~~f~~l~~~~ 178 (225)
+++|++|.+.+
T Consensus 180 ~~l~~~l~~~i 190 (191)
T 1oix_A 180 EAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.4e-29 Score=190.99 Aligned_cols=166 Identities=19% Similarity=0.335 Sum_probs=130.3
Q ss_pred CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292 9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR 88 (225)
Q Consensus 9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 88 (225)
.+.......++|+|+|.+|+|||||+++|+++.+...+.++.+.++.. +. ...+.+.+|||||++.+..++..++.
T Consensus 14 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~ 89 (188)
T 1zd9_A 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCR 89 (188)
T ss_dssp -----CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHT
T ss_pred ccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHc
Confidence 344445568999999999999999999999998877777776665543 22 34678899999999999999999999
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccC
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSAL 162 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 162 (225)
.+|++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..++.++++||+
T Consensus 90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 167 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCK 167 (188)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECC
Confidence 9999999999999999999999988876643 258999999999999753 23333322211 234579999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLTEIFN 180 (225)
Q Consensus 163 ~~~~v~~~f~~l~~~~~~ 180 (225)
+|.|++++|++|.+.+.+
T Consensus 168 ~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 168 EKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TCTTHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999887644
No 85
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.5e-29 Score=187.51 Aligned_cols=163 Identities=23% Similarity=0.351 Sum_probs=129.1
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCc-CCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNE-FSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA 90 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (225)
......++|+|+|.+|+|||||+++|.+.. +...+.++.+ +....+.++ ++.+.+|||||++.+..++..++..+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 344567999999999999999999999887 4555566654 334444444 47899999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccC
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLEELRSHAD---KNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSAL 162 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 162 (225)
|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ ....+++.+... ..++.++++||+
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCC
Confidence 999999999999999999999988876643 4799999999999975 334555655553 235679999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLTEIFN 180 (225)
Q Consensus 163 ~~~~v~~~f~~l~~~~~~ 180 (225)
++.|++++|++|.+.+.+
T Consensus 170 ~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTBTHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=1.8e-29 Score=186.96 Aligned_cols=159 Identities=20% Similarity=0.343 Sum_probs=126.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|+|||||+++|.++.+. .+.++.+. ....+.++ ...+.+|||||++.+...+..+++.+|++|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGF--NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSE--EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCcc--ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 45699999999999999999999988774 34455443 33344443 578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEF-----AQKEGLFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~ 168 (225)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...++... +...+++++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999888888776543 2579999999999997632 23333222 22345679999999999999
Q ss_pred HHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFN 180 (225)
Q Consensus 169 ~~f~~l~~~~~~ 180 (225)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=1.6e-28 Score=184.54 Aligned_cols=160 Identities=22% Similarity=0.346 Sum_probs=129.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|+|||||+++|.++. ...+.++.+.. ...+.++ ...+.+|||||++.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999887 55666665533 3344443 578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 168 (225)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999989988876653 257999999999999763 23344333322 245679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFNI 181 (225)
Q Consensus 169 ~~f~~l~~~~~~~ 181 (225)
++|+++.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=7.4e-30 Score=187.86 Aligned_cols=156 Identities=21% Similarity=0.402 Sum_probs=122.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEE
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 97 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (225)
+||+|+|++|+|||||+++|.++.+.. +.++.+ +....+. ...+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887653 455544 2222333 34578999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHHH
Q 027292 98 DISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVENAF 171 (225)
Q Consensus 98 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~f 171 (225)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.... ...+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999989988876543 357999999999999753 2333332221 1234569999999999999999
Q ss_pred HHHHHHHHH
Q 027292 172 MTVLTEIFN 180 (225)
Q Consensus 172 ~~l~~~~~~ 180 (225)
+++.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987754
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=1.9e-28 Score=185.20 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=126.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|||||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+|||||++.+..++..+++.+|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 44679999999999999999999998764 344554443 34455554 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEecc
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK------------EGLFFLETSA 161 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 161 (225)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+.... .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999998887643 35799999999999975 4556666665432 3467999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027292 162 LEATNVENAFMTVLTE 177 (225)
Q Consensus 162 ~~~~~v~~~f~~l~~~ 177 (225)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=7.8e-29 Score=188.59 Aligned_cols=155 Identities=21% Similarity=0.261 Sum_probs=121.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..++|+++|++|||||||+++|.++.+. .+.++.+... ..+.+++ +.+.+|||||++.+..++..+++.+|++|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 4579999999999999999999988764 3445544442 3444554 789999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------cCCeEE
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-----------------EGLFFL 157 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 157 (225)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....+++++++.. .++.++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 999999999999999998887653 35799999999999975 4566777776542 345699
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 027292 158 ETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 158 ~~Sa~~~~~v~~~f~~l~~~ 177 (225)
++||++|.|++++|++|.+.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999764
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=6.4e-29 Score=186.25 Aligned_cols=160 Identities=22% Similarity=0.379 Sum_probs=124.6
Q ss_pred CCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027292 11 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGA 90 (225)
Q Consensus 11 ~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (225)
.......++|+|+|.+|+|||||+++|.+..+ ..+.++.+... ..+.+++ +.+.+|||||++.+..++..+++.+
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 34455689999999999999999999999877 44455555443 2333433 7899999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCC
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEA 164 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 164 (225)
|++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+.. ...++.++++||++|
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 99999999999999999999988876653 357999999999999752 3444444433 223457999999999
Q ss_pred CCHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTE 177 (225)
Q Consensus 165 ~~v~~~f~~l~~~ 177 (225)
.|++++|++|.+.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999998764
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.1e-28 Score=183.31 Aligned_cols=160 Identities=22% Similarity=0.376 Sum_probs=125.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|.+|||||||+++|.++.+. .+.++.+... ..+.++ .+.+.+|||||++.+..++..++..+|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988776 4555544333 333443 378999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 168 (225)
+|+|+++.++++.+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+... ..++.++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999998887653 24799999999999975 234455544432 245679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFNI 181 (225)
Q Consensus 169 ~~f~~l~~~~~~~ 181 (225)
++|++|++.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 167 QGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876443
No 93
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1.6e-29 Score=190.10 Aligned_cols=164 Identities=21% Similarity=0.442 Sum_probs=121.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--cCCCCCCCcceeeeEEEEEEE---CCEEEEEEEEeCCCchhhhhhhHhhhcCCC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN--EFSLDSKATIGVEFQTRTLVI---QHKSVKAQIWDTAGQERYRAVTSAYYRGAV 91 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (225)
.+||+|+|++|||||||+++|++. .+...+.++.+.++....+.. ++..+.+.+|||+|++.|..++..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 444456677666666554433 235678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCe----EEEeccCC
Q 027292 92 GAMLVYDISRR-QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP---TEDAKEFAQKEGLF----FLETSALE 163 (225)
Q Consensus 92 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 163 (225)
++++|||+++. .+++.+..|+..+..... +.|+++|+||+|+.+.+... .+....++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999986 578899999998876643 78999999999997532211 12334555566776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHHH
Q 027292 164 AT-NVENAFMTVLTEIFNI 181 (225)
Q Consensus 164 ~~-~v~~~f~~l~~~~~~~ 181 (225)
+. ++.++++.+.+.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 97 8999999888877554
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=3.1e-28 Score=182.69 Aligned_cols=160 Identities=23% Similarity=0.351 Sum_probs=123.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|||||||+++|.+..+. .+.++.+. ....+..+ .+.+.+|||||++.+...+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45799999999999999999999987542 33444443 23334444 578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 168 (225)
+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.... ...++.++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 9999999999999988888765442 3579999999999997633 233333221 1234579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFNI 181 (225)
Q Consensus 169 ~~f~~l~~~~~~~ 181 (225)
++|+++++.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877543
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.3e-27 Score=195.13 Aligned_cols=163 Identities=28% Similarity=0.512 Sum_probs=143.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..++|+|+|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 468999999999999999999999888777777765444 4556678889999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEecc
Q 027292 96 VYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ------------RAVPTEDAKEFAQKEGL-FFLETSA 161 (225)
Q Consensus 96 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa 161 (225)
|||+++..+++.+. .|+..+..... +.|+++|+||+|+.+. +.+..+++..++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999886 78888877665 8999999999999653 56778889999999997 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027292 162 LEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 162 ~~~~~v~~~f~~l~~~~~~ 180 (225)
++|.|++++|++|++.+++
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=4.1e-29 Score=189.74 Aligned_cols=165 Identities=20% Similarity=0.224 Sum_probs=121.3
Q ss_pred CCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEE--E-CCEEEEEEEEeCCCchhhhhhh--
Q 027292 9 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLV--I-QHKSVKAQIWDTAGQERYRAVT-- 83 (225)
Q Consensus 9 ~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~Dt~G~~~~~~~~-- 83 (225)
....+....+||+|+|++|||||||++++.+... .. ++.+.++...... + ++..+.+.+|||+|++.|....
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 88 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD 88 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh
Confidence 4445677899999999999999999998877432 22 3333333332222 2 2566889999999999987776
Q ss_pred -HhhhcCCCEEEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-------CCCCHHHHHHHHH---
Q 027292 84 -SAYYRGAVGAMLVYDISRR--QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ-------RAVPTEDAKEFAQ--- 150 (225)
Q Consensus 84 -~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------~~~~~~~~~~~~~--- 150 (225)
..+++.+|++|+|||+++. +++..+..|+..+.... .+.|++||+||+|+... +.+..+....+++
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 8899999999999999986 67777777777765443 48999999999998641 2333444566777
Q ss_pred -HcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 151 -KEGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 151 -~~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
..++.|+++||++ .|++++|+.+++.+
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6778899999999 99999999998865
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=4.2e-29 Score=189.18 Aligned_cols=158 Identities=21% Similarity=0.408 Sum_probs=119.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|||||||+++|..+.+. .+.++.+ +....+.. ..+.+.+|||||++.+..++..+++.+|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999988764 3344433 33333333 4478999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 168 (225)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.... ...+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999999988876543 247999999999999753 2333332221 1234569999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 169 NAFMTVLTEIF 179 (225)
Q Consensus 169 ~~f~~l~~~~~ 179 (225)
++|++|++.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=4.3e-28 Score=181.58 Aligned_cols=160 Identities=19% Similarity=0.353 Sum_probs=124.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|||||||+++|.++.+ ..+.++.+.. ...+.++ ...+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999998776 4445555533 3334443 378999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-----EGLFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~ 168 (225)
+|+|+++..+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+.... .+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999988876654 357999999999999753 334444443321 23469999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFNI 181 (225)
Q Consensus 169 ~~f~~l~~~~~~~ 181 (225)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.1e-30 Score=199.41 Aligned_cols=163 Identities=28% Similarity=0.524 Sum_probs=136.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4679999999999999999999998887766666654433 334455667788999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEec
Q 027292 95 LVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQR------------AVPTEDAKEFAQKEGL-FFLETS 160 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 160 (225)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.. .+..+++..+++.+++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999886 78888776554 79999999999997532 4455667778888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 027292 161 ALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 161 a~~~~~v~~~f~~l~~~~~ 179 (225)
|++|.|++++|++|++.++
T Consensus 186 A~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 9999999999999987653
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=6.7e-29 Score=187.22 Aligned_cols=160 Identities=19% Similarity=0.312 Sum_probs=126.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+|+|++|+|||||+++|..+.+.. +.++.+.. ...+..+ ...+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998877643 44554433 3334343 578999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFA-----QKEGLFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 168 (225)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.... ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999888888776543 2579999999999997632 223333221 2234579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFNI 181 (225)
Q Consensus 169 ~~f~~l~~~~~~~ 181 (225)
++|+++.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=2.9e-27 Score=174.73 Aligned_cols=153 Identities=17% Similarity=0.202 Sum_probs=115.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc--
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR------AVTSAYYR-- 88 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-- 88 (225)
.++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||++.+. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998776555555545555555555544 578999999988764 34455554
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE 168 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 168 (225)
.+|++++|+|+.+.+ ....|+..+.+. +.|+++|+||+|+...+.+.. +...++..++++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~---~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALE---RNLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHH---HHHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchh---HhHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 899999999998754 344577776553 789999999999865333332 3677888889999999999999999
Q ss_pred HHHHHHHHHH
Q 027292 169 NAFMTVLTEI 178 (225)
Q Consensus 169 ~~f~~l~~~~ 178 (225)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.5e-26 Score=179.68 Aligned_cols=168 Identities=20% Similarity=0.152 Sum_probs=119.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc------hh----hhhhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ------ER----YRAVT 83 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~----~~~~~ 83 (225)
....++|+|+|.+|||||||+++|++..+.....+..+.+......... ...+.+|||||. +. +.. +
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~-~ 102 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTT-I 102 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHH-H
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHH-H
Confidence 3567999999999999999999999987653332222233333222222 367899999998 33 222 3
Q ss_pred HhhhcCCCEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHHcC--CeE
Q 027292 84 SAYYRGAVGAMLVYDISRRQSFDH--IPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE---DAKEFAQKEG--LFF 156 (225)
Q Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~ 156 (225)
..++..+|++|+|||+++..+++. ...|+..+.... .+.|+++|+||+|+.+.+.+..+ ....++...+ +.+
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 345788999999999999877642 235555555432 37999999999999876666554 4556677776 789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHHHhhc
Q 027292 157 LETSALEATNVENAFMTVLTEIFNIVNKK 185 (225)
Q Consensus 157 ~~~Sa~~~~~v~~~f~~l~~~~~~~~~~~ 185 (225)
+++||++|.|++++|++|.+.+.+.....
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~~~~~~ 210 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKNDQAES 210 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776543
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=2e-27 Score=182.63 Aligned_cols=159 Identities=14% Similarity=0.191 Sum_probs=113.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE-EEEEEEEeCCCchhhhh-hhHhhhcCCC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK-SVKAQIWDTAGQERYRA-VTSAYYRGAV 91 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d 91 (225)
....++|+|+|++|+|||||+++|++..+...+.++ +.++.. +.+++. .+.+.+|||||++.+.. ++..+++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 345789999999999999999999998876666543 333332 444433 68899999999999988 7888999999
Q ss_pred EEEEEEeCCChh-hHHhHHH-HHHHHHhh--cCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHH---H-------------
Q 027292 92 GAMLVYDISRRQ-SFDHIPR-WLEELRSH--ADKNIVIILIGNKSDLEEQRAVPTEDAK-EFA---Q------------- 150 (225)
Q Consensus 92 ~~i~v~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~---~------------- 150 (225)
++|+|||+++.. ++..... |...+... ...+.|+++|+||+|+.+... .+... .+. .
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhccccc
Confidence 999999999853 4555544 44444432 234799999999999976432 11111 111 1
Q ss_pred --------------------Hc--CCeEEEeccCCC------CCHHHHHHHHHHH
Q 027292 151 --------------------KE--GLFFLETSALEA------TNVENAFMTVLTE 177 (225)
Q Consensus 151 --------------------~~--~~~~~~~Sa~~~------~~v~~~f~~l~~~ 177 (225)
.+ ++.|+++||++| .|++++|++|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-28 Score=194.28 Aligned_cols=169 Identities=28% Similarity=0.393 Sum_probs=124.8
Q ss_pred CCCCCCceeeeEEEEcCC---------CCCHHHHHHHHhc---CcCCCCCCCcc-eeeeEEEEE--------------EE
Q 027292 9 DPNQKIDYVFKVVLIGDS---------AVGKSQILARFAR---NEFSLDSKATI-GVEFQTRTL--------------VI 61 (225)
Q Consensus 9 ~~~~~~~~~~~I~vlG~~---------g~GKSsLi~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~ 61 (225)
..+......+||+|+|.+ |||||||+++|++ ..+...+.+++ +.++....+ ..
T Consensus 11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~ 90 (255)
T 3c5h_A 11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE 90 (255)
T ss_dssp CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence 344456778999999999 9999999999999 55555555553 233221111 13
Q ss_pred CCEEEEEEEEe-----------------------CCCchhhhhhhHhhhc---------------------CCCEEEEEE
Q 027292 62 QHKSVKAQIWD-----------------------TAGQERYRAVTSAYYR---------------------GAVGAMLVY 97 (225)
Q Consensus 62 ~~~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~i~v~ 97 (225)
++..+.+.+|| ++|++.|..++..++. ++|++|+||
T Consensus 91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~ 170 (255)
T 3c5h_A 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI 170 (255)
T ss_dssp -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence 45678899999 5566666666666666 799999999
Q ss_pred eCCCh--hhHHhHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEeccCCCCCHHHHHHH
Q 027292 98 DISRR--QSFDHIPRWLEELRSH-ADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQK-EGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 98 d~~~~--~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
|++++ .+++.+..|+..+... ...+.|++||+||+|+.+.+.+ +++++++.. .+++++++||+++.|++++|++
T Consensus 171 D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 171 DVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred ECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHH
Confidence 99998 8999999999988766 3357999999999999753332 566677766 4789999999999999999999
Q ss_pred HHHHHH
Q 027292 174 VLTEIF 179 (225)
Q Consensus 174 l~~~~~ 179 (225)
|++.+.
T Consensus 249 l~~~l~ 254 (255)
T 3c5h_A 249 LVQLID 254 (255)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988763
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=7.3e-27 Score=174.01 Aligned_cols=160 Identities=17% Similarity=0.176 Sum_probs=121.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
....++|+|+|++|||||||+++|.+..+...+.++.+.+.....+..++. .+.+|||||++.+..++..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 356789999999999999999999998887777666665665555555553 567999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-------C--CeEEEeccCCC
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-------G--LFFLETSALEA 164 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~ 164 (225)
|+|+|+++...... +..+......+.|+++|+||+|+.+. ..+......... + ++++++||++|
T Consensus 83 i~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 83 ILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 99999987432222 22222223347899999999999753 233333333322 2 47999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 165 ~~v~~~f~~l~~~~~~~~ 182 (225)
.|++++|++|++.+....
T Consensus 156 ~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhhhhhc
Confidence 999999999998876653
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=2.7e-26 Score=185.85 Aligned_cols=159 Identities=21% Similarity=0.321 Sum_probs=125.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh-----hhhhHhhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSL---DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY-----RAVTSAYY 87 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~ 87 (225)
..+||+|+|.+|||||||+++|+++.... .+.+|.+..+. .+.+.+ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 46899999999999999999998874332 33444444433 344433 688999999999988 67888899
Q ss_pred cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--CCC----CCHHHHHHHHHHcC---CeE
Q 027292 88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHA--DKNIVIILIGNKSDLEE--QRA----VPTEDAKEFAQKEG---LFF 156 (225)
Q Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~ 156 (225)
+.+|++|+|||+++..+++.+..|...+.... ..+.|+++|+||+|+.+ .+. ...+++.+++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999998877765554432 34799999999999976 332 44467788888887 689
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 027292 157 LETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 157 ~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
+++||++ .++.++|..+++.+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTT
T ss_pred EEeeecC-ChHHHHHHHHHHHH
Confidence 9999999 88999998887754
No 107
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=1.1e-26 Score=174.92 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=118.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC-----------chhhhhhhHh
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG-----------QERYRAVTSA 85 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~ 85 (225)
.++|+|+|++|||||||+++|.+..+...+.++.+.. ...+... .+.+||||| ++.+...+..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 3799999999999999999999988776666654333 3333333 688999999 6778888777
Q ss_pred hhcC-CCEEEEEEeCCChhhHHhH-HHHHHH--------H-HhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027292 86 YYRG-AVGAMLVYDISRRQSFDHI-PRWLEE--------L-RSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL 154 (225)
Q Consensus 86 ~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 154 (225)
+++. ++++++|+++.+..++..+ ..|... + ......+.|+++|+||+|+.+.. .+..++++..+++
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTC
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhh
Confidence 7776 6666666666666666665 566542 2 22223479999999999997643 5667888888886
Q ss_pred e-------EEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q 027292 155 F-------FLETSALEATNVENAFMTVLTEIFNIVNK 184 (225)
Q Consensus 155 ~-------~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~ 184 (225)
+ ++++||++|.|++++|+++.+.+.+...+
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 4 79999999999999999999998776544
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.6e-26 Score=186.68 Aligned_cols=158 Identities=20% Similarity=0.360 Sum_probs=118.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..++|+|+|.+|||||||+++|.+..+.... ++.+..+ ..+. ...+.+.||||||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999988764332 4433333 2232 345789999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHA-DKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNVEN 169 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 169 (225)
|||+++..+++.+..|+..+.... ..+.|++||+||+|+.+.. ..+++..... ..+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 999999999999888877765543 3589999999999997633 2333332221 1245699999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 170 AFMTVLTEIFN 180 (225)
Q Consensus 170 ~f~~l~~~~~~ 180 (225)
+|++|++.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=5.9e-26 Score=171.69 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=109.0
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----------chhhhhh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG----------QERYRAV 82 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~ 82 (225)
+....++|+|+|.+|+|||||+++|++..+...+.++.+.+........+. .+.+||||| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 345789999999999999999999999875555555544444444444433 589999999 7788888
Q ss_pred hHhhhcCC---CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH--HHHHH-HHHHcCCeE
Q 027292 83 TSAYYRGA---VGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT--EDAKE-FAQKEGLFF 156 (225)
Q Consensus 83 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~ 156 (225)
+..++..+ |++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.+...... +++.+ +....++++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 88888776 9999999999876655432 2222222 3789999999999976433221 12222 222345789
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 027292 157 LETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 157 ~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
+++||+++.|++++|++|.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=5.8e-26 Score=170.76 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=122.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc-
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR------AVTSAYYR- 88 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 88 (225)
..++|+|+|++|||||||+++|++..+.....++.+.+.....+..++ ..+.+|||||++.+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999998766555555555555555555543 678999999988764 34555554
Q ss_pred -CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 89 -GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 89 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
.+|++++|+|..+ ++....|+..+.. .+.|+++|+||+|+.....+. .....+++.++++++++||+++.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5999999999875 4555677777655 378999999999996543333 3567788888999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027292 168 ENAFMTVLTEIFNI 181 (225)
Q Consensus 168 ~~~f~~l~~~~~~~ 181 (225)
+++|+++++.+...
T Consensus 157 ~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 157 EELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999877543
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=4.5e-25 Score=189.70 Aligned_cols=161 Identities=20% Similarity=0.405 Sum_probs=126.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGA 93 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (225)
....++|+|+|.+|||||||+++|.+..+. .+.+|.+..+.. + ....+.+.+|||+|++.+..++..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--V--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--E--ESSSCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE--E--EeCCEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 345799999999999999999999998854 344554544432 3 23557899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCH
Q 027292 94 MLVYDISRRQSFDHIPRWLEELRSHAD-KNIVIILIGNKSDLEEQRAVPTEDAKEFAQ-----KEGLFFLETSALEATNV 167 (225)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v 167 (225)
|+|||+++..+++.+..|+..+..... .+.|++||+||+|+.+. ...+++..... ..+++++++||++|.|+
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 999999999999999999888766432 58999999999999753 23333332211 12345999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027292 168 ENAFMTVLTEIFNI 181 (225)
Q Consensus 168 ~~~f~~l~~~~~~~ 181 (225)
+++|++|.+.+.+.
T Consensus 472 ~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 472 YEGLTWLTSNYKSK 485 (497)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999876444
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=1e-25 Score=165.02 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=105.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER-------YRAVTSAYYRG 89 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 89 (225)
+||+|+|++|+|||||+++|.+..+. ....++.+.+.....+..++. .+.+|||||.+. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988754 223333344444445555443 788999999876 45566778899
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVE 168 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 168 (225)
+|++|+|+|+++..+.. ..|+..+... .+.|+++|+||+|+.+.. +++.+++ .+++ +++++||+++.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 99999999999753322 2222222222 378999999999997531 3334444 5677 79999999999999
Q ss_pred HHHHHHHHHH
Q 027292 169 NAFMTVLTEI 178 (225)
Q Consensus 169 ~~f~~l~~~~ 178 (225)
++|+++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 113
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=7.1e-27 Score=188.36 Aligned_cols=158 Identities=17% Similarity=0.217 Sum_probs=118.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh---hhHhhhcCCCE
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSL---DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA---VTSAYYRGAVG 92 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~ 92 (225)
||+++|+.|||||||++++.+.-++. ...+|.+.++.. + +..+.+++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v---~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F---STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E---CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E---ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654332 245666666543 2 2347899999999999964 46889999999
Q ss_pred EEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----cCCeEEEe
Q 027292 93 AMLVYDISRR--QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQ-------RAVPTEDAKEFAQK----EGLFFLET 159 (225)
Q Consensus 93 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 159 (225)
+|+|||+++. +....+..|+..+.... .+.|+++++||+|+..+ +.+..++++++++. .++.|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 33333444455554443 48999999999999753 23444555666664 57889999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 160 SALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 160 Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
||++ .+|.++|..+++.+.....
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHH
Confidence 9998 5899999999887755444
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=7.8e-26 Score=168.26 Aligned_cols=153 Identities=19% Similarity=0.212 Sum_probs=113.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh------h--hHhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA------V--TSAY 86 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~--~~~~ 86 (225)
..++|+|+|.+|+|||||+++|.+.... ....++.+.++....+..++. .+.+|||||.+.+.. . ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3479999999999999999999987643 233344445555566666553 478999999764211 1 1235
Q ss_pred hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292 87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN 166 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (225)
++.+|++++|+|+++..+++ ...|+..+.+....+.|+++|+||+|+.+... .++...+.+++++||+++.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999887765 45788877776656799999999999964211 11222466799999999999
Q ss_pred HHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEI 178 (225)
Q Consensus 167 v~~~f~~l~~~~ 178 (225)
++++|++|.+.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=3.1e-25 Score=175.33 Aligned_cols=156 Identities=18% Similarity=0.163 Sum_probs=119.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhh-
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA------VTSAYY- 87 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~- 87 (225)
...++|+|+|.+|||||||+++|++..+.....+..+.+.....+.. ....+.+|||||...+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 35789999999999999999999997765555555444444444443 347899999999877654 234454
Q ss_pred -cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292 88 -RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN 166 (225)
Q Consensus 88 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (225)
..+|++|+|+|+++.+.. ..|...+.+. +.|+++|+||+|+.+.+... ....++++.++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence 589999999999986543 3466555543 79999999999996544443 236788888999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEIF 179 (225)
Q Consensus 167 v~~~f~~l~~~~~ 179 (225)
++++|+++.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988653
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=5.5e-26 Score=196.90 Aligned_cols=164 Identities=21% Similarity=0.252 Sum_probs=126.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEE--------EECCEEEEEEEEeCCCchhhhhhhHh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTL--------VIQHKSVKAQIWDTAGQERYRAVTSA 85 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~Dt~G~~~~~~~~~~ 85 (225)
....+||+|+|.+|||||||+++|.+..+...+.++.+.++..... ..++..+.+.+|||||++.+..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4567999999999999999999999998887777887776665421 11234678999999999999999999
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT 165 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (225)
+++.+|++|+|+|+++. +.+..|+..+..... +.|+++|+||+|+.+.+.+..+.+++++...+++++++||++|.
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 99999999999998754 567889999888765 79999999999998877778888888888899999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTEIFNI 181 (225)
Q Consensus 166 ~v~~~f~~l~~~~~~~ 181 (225)
|++++|+.+.+.+.+.
T Consensus 194 gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHP 209 (535)
T ss_dssp -CTTHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999877553
No 117
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=2.2e-25 Score=177.24 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=116.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc-
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR------AVTSAYYR- 88 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 88 (225)
+.++|+++|.+|||||||+++|++........+. ++.......+.. ...+.+|||||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg--~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPG--VTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSC--CCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCC--CcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 4689999999999999999999987654444444 333333444455 6789999999988765 34555665
Q ss_pred -CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 89 -GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 89 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
.+|++|+|+|+++.+. ...|...+.+ .+.|+++|+||+|+.....+. .....++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLER---NLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHh---HHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 6999999999987544 3456666655 379999999999996533333 3467788889999999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 168 ENAFMTVLTEI 178 (225)
Q Consensus 168 ~~~f~~l~~~~ 178 (225)
+++|+++.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.92 E-value=1.9e-24 Score=175.03 Aligned_cols=162 Identities=18% Similarity=0.119 Sum_probs=123.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCc-ceeeeEEEEEEECCEEEEEEEEeCCCchh----------hhh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKAT-IGVEFQTRTLVIQHKSVKAQIWDTAGQER----------YRA 81 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~ 81 (225)
+..+.-.|+|+|.+|||||||+|+|++..+....... ++.......... .....+.||||||... +..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 5667889999999999999999999998876433322 222222222222 2267899999999743 335
Q ss_pred hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEe
Q 027292 82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG--LFFLET 159 (225)
Q Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~ 159 (225)
....++..+|++++|+|+++..+......|+..+... +.|+++|+||+|+.+......+....+...++ ..++++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~v 161 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI 161 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 6677889999999999999987777777777777653 78999999999997434555666777777775 679999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 027292 160 SALEATNVENAFMTVLTEI 178 (225)
Q Consensus 160 Sa~~~~~v~~~f~~l~~~~ 178 (225)
||++|.|++++|+++.+.+
T Consensus 162 SA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 162 SALKGANLDELVKTILKYL 180 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHS
T ss_pred eCCCCCCHHHHHHHHHHhC
Confidence 9999999999999998765
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=1.5e-24 Score=163.68 Aligned_cols=159 Identities=18% Similarity=0.216 Sum_probs=113.1
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----------chhhhh
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG----------QERYRA 81 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~ 81 (225)
.+....++|+|+|.+|+|||||+++|++.... ...++.+.+........+ ..+.+||||| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHH
Confidence 34567789999999999999999999998743 333333444443333332 2477999999 677777
Q ss_pred hhHhhhcCC---CEEEEEEeCCChhhH--HhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC-
Q 027292 82 VTSAYYRGA---VGAMLVYDISRRQSF--DHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEG- 153 (225)
Q Consensus 82 ~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~- 153 (225)
++..+++.+ |++++|+|+.+..+. ..+..|+... +.|+++|+||+|+.+... ...++++.++...+
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 777777665 999999998875332 2333444332 789999999999975322 22234555555534
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 154 LFFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 154 ~~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
++++++||+++.|++++|+++.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999999987643
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=1.9e-25 Score=176.29 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=116.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh----------hhHhhh
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA----------VTSAYY 87 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~ 87 (225)
.+|+|+|.+|||||||+|+|.+........++.+.+.....+...+. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 58999999999999999999998766666666666666666666554 789999999876653 455566
Q ss_pred --cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 027292 88 --RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEAT 165 (225)
Q Consensus 88 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (225)
..+|++|+|+|+++.+....+..| +. ..+.|+++|+||+|+.+..... .....+...++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999986554443333 32 2379999999999986533322 23556778889999999999999
Q ss_pred CHHHHHHHHHHH
Q 027292 166 NVENAFMTVLTE 177 (225)
Q Consensus 166 ~v~~~f~~l~~~ 177 (225)
|++++|+++.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 121
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=2.5e-25 Score=171.33 Aligned_cols=146 Identities=15% Similarity=0.270 Sum_probs=106.7
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSL---DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR 88 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 88 (225)
......++|+|+|++|+|||||+++|.+..+.. .+.++.+..+ ....+.+|||||++.+...+..++.
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~ 77 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLK 77 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHH
Confidence 345678999999999999999999999987644 2333322222 4457889999999999888888887
Q ss_pred C----CCEEEEEEeCC-ChhhHHhHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHHcC
Q 027292 89 G----AVGAMLVYDIS-RRQSFDHIPRWLEELRSH----ADKNIVIILIGNKSDLEEQRAVP------TEDAKEFAQKEG 153 (225)
Q Consensus 89 ~----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~------~~~~~~~~~~~~ 153 (225)
. +|++|+|+|++ +..++..+..|+..+... ...+.|+++|+||+|+....... .+++..++...+
T Consensus 78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 157 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK 157 (218)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence 7 89999999999 888888888888877654 33589999999999998754433 344566677777
Q ss_pred CeEEEeccCCCCC
Q 027292 154 LFFLETSALEATN 166 (225)
Q Consensus 154 ~~~~~~Sa~~~~~ 166 (225)
+.++++|++++.+
T Consensus 158 ~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 158 KSLNEVERKINEE 170 (218)
T ss_dssp HHHHC--------
T ss_pred ccccccccccccc
Confidence 8899999998875
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=3.3e-24 Score=170.72 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=118.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhh--c
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA------VTSAYY--R 88 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~ 88 (225)
.++|+|+|++|+|||||+++|++..+.....++.+.+.....+...+. .+.+|||||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 589999999999999999999998775556666666666655555443 589999999887655 455555 6
Q ss_pred CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292 89 GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE 168 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 168 (225)
.+|++|+|+|+++.+ ....|+..+.+.. ..|+++|+||+|+.+....... ...+.+.++++++++||++|.|+.
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence 899999999998753 3334444444431 2899999999998543222222 677788889999999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 169 NAFMTVLTEIF 179 (225)
Q Consensus 169 ~~f~~l~~~~~ 179 (225)
++|+++.+.+.
T Consensus 155 ~l~~~i~~~~~ 165 (271)
T 3k53_A 155 ELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=2.2e-24 Score=166.53 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=110.9
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCC----------chhhhh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ-HKSVKAQIWDTAG----------QERYRA 81 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G----------~~~~~~ 81 (225)
+....++|+|+|.+|+|||||+++|++...........+++......... .....+.+||||| .+.+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 44567999999999999999999999986321222222233333333333 4456789999999 455566
Q ss_pred hhHhhhcC---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHH-----
Q 027292 82 VTSAYYRG---AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP--TEDAKEFAQK----- 151 (225)
Q Consensus 82 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~----- 151 (225)
+...++.. +|++|+|+|+.+..+. ....|+..+.. .+.|+++|+||+|+.+..... .+...+....
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence 66666655 7889999999874332 22344444443 378999999999997532211 1122222222
Q ss_pred --cCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292 152 --EGLFFLETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 152 --~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
.+++++++||++|.|++++|++|.+.+...
T Consensus 181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 456799999999999999999999887544
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=1.1e-24 Score=173.70 Aligned_cols=153 Identities=15% Similarity=0.154 Sum_probs=114.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh----------hhHhh
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA----------VTSAY 86 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~ 86 (225)
.++|+|+|.+|+|||||+|+|++..+.....++.+.+.....+...+ ..+.+|||||...+.. ....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999999876555566655555555555433 5678999999877652 22233
Q ss_pred h--cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 027292 87 Y--RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEA 164 (225)
Q Consensus 87 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (225)
+ ..+|++|+|+|+++.+.... |...+.+. +.|+++|+||+|+.+..... .....+...++++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 79999999999998655443 34444433 79999999999986533222 2356778888999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTEI 178 (225)
Q Consensus 165 ~~v~~~f~~l~~~~ 178 (225)
.|++++|+++.+.+
T Consensus 154 ~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 154 RGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999887644
No 125
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=1.9e-24 Score=181.15 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=118.1
Q ss_pred CCCCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh-
Q 027292 5 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV- 82 (225)
Q Consensus 5 ~~~~~~~~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~- 82 (225)
..|+....+....++|+|+|+.|+|||||+++|++..+. ....+..+.+.....+...+. ..+.+|||||++.+..+
T Consensus 22 ~~msm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~ 100 (423)
T 3qq5_A 22 RRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELG 100 (423)
T ss_dssp --CCCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTC
T ss_pred hhCccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchh
Confidence 345555556778899999999999999999999988763 233344445555555555443 37899999998876544
Q ss_pred ------hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeE
Q 027292 83 ------TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFF 156 (225)
Q Consensus 83 ------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 156 (225)
...++..+|++|+|+|+... +....|+..+.+. +.|+++|+||+|+.+.... +..++++..+++++
T Consensus 101 ~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v 172 (423)
T 3qq5_A 101 RLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKV 172 (423)
T ss_dssp CCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCC
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCE
Confidence 34578899999999998322 3345677777665 7999999999999875443 55667777788999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHH
Q 027292 157 LETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 157 ~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
+++||++|.|++++|++|.+.+.
T Consensus 173 ~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 173 LLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCCSSCCTTSTTTHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999988773
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=2.3e-23 Score=176.22 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=116.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc----------hhhhhhh
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ----------ERYRAVT 83 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 83 (225)
+..++|+|+|.+|||||||+|+|++.... ....++++.+.....+..++. .+.+|||||+ +.|..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45799999999999999999999987754 333344444444444445544 5889999997 5565554
Q ss_pred H-hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHHHH----cCCeEE
Q 027292 84 S-AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAK-EFAQK----EGLFFL 157 (225)
Q Consensus 84 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 157 (225)
. .+++.+|++|+|+|+++..+.+.. .|+..+.. .+.|+++|+||+|+.+......++.. .+... .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 478899999999999987776654 57666654 37999999999999875554433332 22333 367899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHH
Q 027292 158 ETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 158 ~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
++||++|.|++++|+.+.+.+.+.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=4.5e-23 Score=175.37 Aligned_cols=164 Identities=18% Similarity=0.166 Sum_probs=120.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----------chhhhhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG----------QERYRAV 82 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~ 82 (225)
.+..++|+++|.+|+|||||+++|.+... .....++++.+.....+..++. .+.+||||| ++.|..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 45679999999999999999999997653 2333444444444444445444 788999999 6777766
Q ss_pred hH-hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeE
Q 027292 83 TS-AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-----GLFF 156 (225)
Q Consensus 83 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~ 156 (225)
.. .+++.+|++|+|+|+++..+ +....|+..+.+ .+.|+++|+||+|+.+.+....+++.+.+... .+++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 55 37889999999999987433 223455555554 37999999999999876666666666666554 5789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 157 LETSALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 157 ~~~Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
+++||++|.|++++|+++.+.+.+...
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988766543
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=2.4e-22 Score=165.91 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=120.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHh
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR---------AVTSA 85 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~ 85 (225)
...++|+|+|.+|||||||+++|.+........+..+.......+... ...+.+|||||...+. .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999876433222222233333333222 4578999999974321 12223
Q ss_pred hhcCCCEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292 86 YYRGAVGAMLVYDISRRQ--SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE 163 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (225)
+...+|++++|+|+++.. +++....|+..+..... +.|+++|+||+|+..... .++...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 456799999999998876 67777888888877655 799999999999975322 2445566677888999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~~~~~ 182 (225)
|.|++++|+++.+.+....
T Consensus 320 g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999886653
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=9.7e-23 Score=173.37 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=98.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhh--------Hhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVT--------SAY 86 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 86 (225)
..++|+|+|.+|+|||||+|+|.+.... ....+.++.+.....+..++ +.+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3588999999999999999999987543 33344444455444555544 579999999987765443 336
Q ss_pred hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292 87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN 166 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (225)
+..+|++|+|+|+++..+++.+..+...+... . +.|+++|+||+|+...... ..+.+......+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH-P-AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 78999999999999988776544444333333 2 7999999999999764322 22334443236799999999999
Q ss_pred HHHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEIF 179 (225)
Q Consensus 167 v~~~f~~l~~~~~ 179 (225)
++++|++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=3.2e-22 Score=161.30 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=107.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--------YRAVTSAY 86 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~ 86 (225)
...+|+|+|.+|+|||||+|+|++..+.... .+.++....... .......+.+|||||... +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i--~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI--LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE--EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE--EEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 4567999999999999999999998775432 222222211111 223456899999999765 45566678
Q ss_pred hcCCCEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-C-CeEEEeccCC
Q 027292 87 YRGAVGAMLVYDISRRQSFDHIPRWL-EELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE-G-LFFLETSALE 163 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 163 (225)
++.+|++++|+|+++..+.. ..|+ ..+.... .+.|+++|+||+|+..... ........+ + ..++++||++
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence 89999999999998764432 3444 3444432 3799999999999975321 022333332 3 4689999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTEI 178 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~ 178 (225)
|.|++++|+++.+.+
T Consensus 157 g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 157 ERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999887644
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=9.8e-23 Score=166.61 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=117.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----hhhhhHhhh---cCC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----YRAVTSAYY---RGA 90 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~---~~~ 90 (225)
.+|+|+|.++||||||+++|.+........+.++.......+.+++ ...+.+|||||... +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4789999999999999999998754333322222333333343332 24789999999643 233434444 459
Q ss_pred CEEEEEEeCCC---hhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEeccCC
Q 027292 91 VGAMLVYDISR---RQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG--LFFLETSALE 163 (225)
Q Consensus 91 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 163 (225)
|++|+|+|+++ ..+++.+..|+.++..+.. .+.|+++|+||+|+... .+...++.+.++ .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7788889999999987753 47999999999998752 244566777766 6799999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTEIFN 180 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~~~ 180 (225)
+.|++++|++|.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999887743
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=3e-21 Score=161.77 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=114.3
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEE-------------------E---ECCEEEEEEE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTL-------------------V---IQHKSVKAQI 70 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~-------------------~---~~~~~~~~~l 70 (225)
.....++|+++|++++|||||+++|.+........ ........ . .......+.+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG----YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 79 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE----EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC----ccccceeeccccccccceecccccccccccccccccceEEE
Confidence 35567999999999999999999998754322111 00000000 0 0123378999
Q ss_pred EeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC--CHHHHHHH
Q 027292 71 WDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV--PTEDAKEF 148 (225)
Q Consensus 71 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~ 148 (225)
|||||++.|......++..+|++|+|+|+++..+..+...|+..+.... ..|+++|+||+|+.+.... ..+++.++
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998776677777777665542 2589999999999753211 11122222
Q ss_pred HHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 149 AQKE---GLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 149 ~~~~---~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
.... +++++++||++|.|++++|++|.+.+
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 2222 56799999999999999999988754
No 133
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=9e-22 Score=153.75 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=104.7
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC--cceeeeEEEEEEECCEEEEEEEEeCCCc-----------hhh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKA--TIGVEFQTRTLVIQHKSVKAQIWDTAGQ-----------ERY 79 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------~~~ 79 (225)
+....++|+|+|.+|+|||||+++|++..+.....+ +.+........... +..+.+|||||. ..+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHH
Confidence 455689999999999999999999999887666555 33333333333343 357889999993 344
Q ss_pred hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHH
Q 027292 80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVP------TEDAKEFAQK 151 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~------~~~~~~~~~~ 151 (225)
...+...++.+|++|+|+|+++.... ...|+..+..... ...|+++|+||+|+.+...+. .+.++.+...
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 45555566789999999998764331 1233333322211 246999999999986543322 2357778888
Q ss_pred cCCeEEEeccCCC-----CCHHHHHHHHHHHHHH
Q 027292 152 EGLFFLETSALEA-----TNVENAFMTVLTEIFN 180 (225)
Q Consensus 152 ~~~~~~~~Sa~~~-----~~v~~~f~~l~~~~~~ 180 (225)
.+..++.++...+ .++.++|+.+.+.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888888876644 5777777766665543
No 134
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=5.8e-21 Score=160.25 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=104.2
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCc---CCCCCCC--cceeeeEEEEEEE-------------C--C----EEEEEE
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNE---FSLDSKA--TIGVEFQTRTLVI-------------Q--H----KSVKAQ 69 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 69 (225)
....++|+++|+.++|||||+++|.+.. +..+..+ |....+....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998532 3333333 3333333322211 1 1 237899
Q ss_pred EEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh----hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHH
Q 027292 70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR----QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTE 143 (225)
Q Consensus 70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~ 143 (225)
+|||||++.|.......+..+|++|+|+|+++. ++.+.+. .+... . ..|+++++||+|+.+... ...+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l-~-~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL-G-IDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT-T-CCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc-C-CCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999998888888899999999999953 3443332 22222 1 357999999999976443 2345
Q ss_pred HHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 144 DAKEFAQK---EGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 144 ~~~~~~~~---~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
++.+++.. .+++++++||++|.|+++++++|.+.+
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 56666654 357899999999999999999988654
No 135
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=4e-22 Score=157.63 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=105.6
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCc-ceeeeEEEEEEECCEEEEEEEEeCCCchhhhh---------
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEF-SLDSKAT-IGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA--------- 81 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------- 81 (225)
+....++|+|+|++|+|||||+++|++... .....++ .+........... +..+.+|||||...+..
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 455679999999999999999999998773 3333333 3333333333333 35789999999765422
Q ss_pred --hhHhhhcCCCEEEEEEeCCChhhH-HhHHHHHHHHHhhcCCCCcEEEEEe-CCCCCCCCCCCH-------HHHHHHHH
Q 027292 82 --VTSAYYRGAVGAMLVYDISRRQSF-DHIPRWLEELRSHADKNIVIILIGN-KSDLEEQRAVPT-------EDAKEFAQ 150 (225)
Q Consensus 82 --~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piilv~n-K~Dl~~~~~~~~-------~~~~~~~~ 150 (225)
....+++.+|++|+|+|+.+.... ..+..|+..+.... ...|.++++| |+|+... .... ..++.+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence 223367899999999999862221 22223333332211 1346666666 9999742 2111 22444666
Q ss_pred HcCCe---E--EEeccCCCCCHHHHHHHHHHHHHHH
Q 027292 151 KEGLF---F--LETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 151 ~~~~~---~--~~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
..+.. + +++||+++.|++++|+++.+.+...
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 66543 2 7899999999999999999887653
No 136
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=3.8e-22 Score=163.68 Aligned_cols=118 Identities=20% Similarity=0.279 Sum_probs=98.2
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISR----------RQSFDHIPRWLEELRSHA-DKNIVIILIGNKSD 133 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D 133 (225)
.+.+.+|||+|++.++..|..++++++++|||||+++ ..++.....|+..+.... ..+.|++|++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5789999999999999999999999999999999998 456777777887776643 25799999999999
Q ss_pred CCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292 134 LEEQR---------------AVPTEDAKEFAQ-----------KEGLFFLETSALEATNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 134 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~ 182 (225)
+.... .+..+++..++. ..++.+++|||+++.||.++|+++.+.+++..
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 84211 356777877776 35677999999999999999999999987653
No 137
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=3.1e-21 Score=167.89 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=111.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCc--CCC---------C--CCCcceeeeEEEEEEE-----CCEEEEEEEEeCCCch
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNE--FSL---------D--SKATIGVEFQTRTLVI-----QHKSVKAQIWDTAGQE 77 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~--~~~---------~--~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~ 77 (225)
+..||+|+|+.++|||||+++|+... ... . .....+++.......+ ++..+.+.||||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 56899999999999999999998621 110 0 0111223333222222 4557899999999999
Q ss_pred hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe--
Q 027292 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF-- 155 (225)
Q Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 155 (225)
.|...+..++..+|++|+|+|+++..+.+....|+.... .+.|+++|+||+|+.+.. ..+...++...+++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999998777777777766543 378999999999997632 233455666667764
Q ss_pred -EEEeccCCCCCHHHHHHHHHHHHH
Q 027292 156 -FLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 156 -~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
++++||++|.|++++|+++.+.+-
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 899999999999999999887653
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=3.3e-21 Score=163.21 Aligned_cols=151 Identities=19% Similarity=0.275 Sum_probs=102.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh---------hhhhhHhhh
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER---------YRAVTSAYY 87 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 87 (225)
.+|+|+|.+|||||||+|+|++.... ....+..+.+.....+...+. .+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 58999999999999999999987653 233444444444445555443 578999999653 345567789
Q ss_pred cCCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHH-HHHHHHcCC-eEEEeccCC
Q 027292 88 RGAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDA-KEFAQKEGL-FFLETSALE 163 (225)
Q Consensus 88 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 163 (225)
+.+|++|+|+|+.+..+.. .+..|+.. .+.|+++|+||+|+.+. . .... .++. .+++ .++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 9999999999998754332 23334332 27899999999998531 0 1222 3333 4566 689999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027292 164 ATNVENAFMTVLTEIFN 180 (225)
Q Consensus 164 ~~~v~~~f~~l~~~~~~ 180 (225)
|.|+.++|+++.+.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999888754
No 139
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=5.9e-21 Score=165.89 Aligned_cols=160 Identities=21% Similarity=0.262 Sum_probs=114.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCc--CCCC---------C--CCcceeeeE--EEEEEE---CCEEEEEEEEeCCC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNE--FSLD---------S--KATIGVEFQ--TRTLVI---QHKSVKAQIWDTAG 75 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~--~~~~---------~--~~~~~~~~~--~~~~~~---~~~~~~~~l~Dt~G 75 (225)
.++..+|+|+|+.++|||||+++|+... +... . ....+++.. ...+.+ ++..+.+.||||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 3567899999999999999999997621 1100 0 001111211 111111 45578999999999
Q ss_pred chhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027292 76 QERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLF 155 (225)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 155 (225)
+++|...+..++..+|++|+|+|+++..+.+....|..... .+.|+++|+||+|+.... ......++...+++.
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLD 156 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCC
Confidence 99999999999999999999999999877777777766543 378999999999997632 233355566666763
Q ss_pred ---EEEeccCCCCCHHHHHHHHHHHHH
Q 027292 156 ---FLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 156 ---~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
++++||++|.|++++|+++++.+-
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 899999999999999999887653
No 140
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=2.1e-21 Score=152.41 Aligned_cols=167 Identities=14% Similarity=0.127 Sum_probs=104.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc--------hhhhhhhHh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ--------ERYRAVTSA 85 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~ 85 (225)
....++|+|+|.+|+|||||+|+|++.........+.+++...........+..+.+|||||. +.+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 456899999999999999999999998776554433223332222222233567889999995 333332333
Q ss_pred hh----cCCCEEEEEEeCCChhhH-HhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC------CHHHHHHHHHHcCC
Q 027292 86 YY----RGAVGAMLVYDISRRQSF-DHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV------PTEDAKEFAQKEGL 154 (225)
Q Consensus 86 ~~----~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~------~~~~~~~~~~~~~~ 154 (225)
++ +.+|++|+|+|+.+.... ..+..|+..+......+.|++|++||.|+.+.... ..+.++.+....+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~ 177 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG 177 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC
Confidence 33 899999999999863221 12233333332222236899999999999753210 11345677778888
Q ss_pred eEEEeccCC-----CCCHHHHHHHHHHHHHH
Q 027292 155 FFLETSALE-----ATNVENAFMTVLTEIFN 180 (225)
Q Consensus 155 ~~~~~Sa~~-----~~~v~~~f~~l~~~~~~ 180 (225)
.++.+++.. +.++.++++.+.+.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 178 RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 777776554 57888888888777655
No 141
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=3.6e-21 Score=161.62 Aligned_cols=161 Identities=20% Similarity=0.205 Sum_probs=110.3
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCc---CCCCCCC--cceeeeEEEEEEE-------------C--C----EEEE
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNE---FSLDSKA--TIGVEFQTRTLVI-------------Q--H----KSVK 67 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~ 67 (225)
......++|+++|+.++|||||+++|.+.. +..+..+ |....+....+.. + + ....
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 456778999999999999999999998532 2233333 3222333222211 0 1 1378
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh----hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CC
Q 027292 68 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR----QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VP 141 (225)
Q Consensus 68 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~ 141 (225)
+.||||||++.|.......+..+|++|+|+|+++. ++.+.+. .+... . ..|+++++||+|+.+... ..
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~-~-~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII-G-QKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH-T-CCCEEEEEECGGGSCHHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc-C-CCcEEEEEECccCCCHHHHHHH
Confidence 99999999999988888888899999999999953 3333332 22222 1 357999999999975321 11
Q ss_pred HHHHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 142 TEDAKEFAQK---EGLFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 142 ~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
.+++.++... .+++++++||++|.|+++++++|.+.+
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 2334444443 357899999999999999999887654
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=1.7e-21 Score=165.79 Aligned_cols=153 Identities=23% Similarity=0.271 Sum_probs=113.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch-hhhh--------hhHhh
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE-RYRA--------VTSAY 86 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~--------~~~~~ 86 (225)
.++|+|+|.+|+|||||+|+|.+.... ....+.++.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999987643 33444445555555555554 568999999987 5432 23457
Q ss_pred hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292 87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN 166 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (225)
+..+|++|+|+|++++.+++... ++..+ .+.|+++|+||+|+.+. ...+++..+.. .+++++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 88999999999999876665432 22322 27899999999999753 34444544432 446899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEIFN 180 (225)
Q Consensus 167 v~~~f~~l~~~~~~ 180 (225)
++++|++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=4.7e-21 Score=163.69 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=109.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCc-------CCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNE-------FSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYY 87 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 87 (225)
-..++|+++|+.++|||||+++|.+.. ...+..+..+.+.....+..+ ...+.+|||||++.|.......+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHHH
Confidence 357999999999999999999999866 222333333333333333333 36899999999999999999999
Q ss_pred cCCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHc----CCeEEE
Q 027292 88 RGAVGAMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKE----GLFFLE 158 (225)
Q Consensus 88 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~ 158 (225)
..+|++|+|+|+++ +++.+. +..+.. .+.|+++++||+|+.+... ...+++.++.... ++++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~----l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEH----MLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHH----HHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hhCCEEEEEEecCCCccHHHHHH----HHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 99999999999987 334333 223322 2688899999999975211 1123344555544 577999
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q 027292 159 TSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 159 ~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
+||++|.|+++++++|.+.+.
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999988775
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=1.5e-20 Score=155.06 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=111.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHhhhc
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQ---------ERYRAVTSAYYR 88 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~~~~ 88 (225)
..|+|+|.+|+|||||+|+|.+........+..+.+.....+.+++ ..+.+|||+|. +.|..++. .+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 3499999999999999999998876444444444455556666666 46789999996 33444433 578
Q ss_pred CCCEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHc---CCeEEEeccC
Q 027292 89 GAVGAMLVYDISRRQ--SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEFAQKE---GLFFLETSAL 162 (225)
Q Consensus 89 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~ 162 (225)
.+|++++|+|++++. ..+.+..|...+......+.|+++|+||+|+...... ..+.+..++..+ +..++++||+
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~ 336 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISAL 336 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTT
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 899999999998876 5566666776666655457899999999999753210 011232334444 2468999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027292 163 EATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 163 ~~~~v~~~f~~l~~~~~~~ 181 (225)
++.|+++++++|.+.+...
T Consensus 337 ~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 337 KRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhccc
Confidence 9999999999998877654
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.85 E-value=1.2e-20 Score=159.43 Aligned_cols=159 Identities=19% Similarity=0.154 Sum_probs=107.1
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCcCC-------------------------------CCCCCcceeeeEEEEEE
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARNEFS-------------------------------LDSKATIGVEFQTRTLV 60 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 60 (225)
.+....++|+++|++++|||||+++|++.... .+..+ +++.......
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~--GiTid~~~~~ 89 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK--GKTVEVGRAY 89 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhc--CceEEEeEEE
Confidence 34566799999999999999999999653211 11112 2333333444
Q ss_pred ECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhh---HHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 027292 61 IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQS---FDHIPRWLEELRSHADKNIV-IILIGNKSDLEE 136 (225)
Q Consensus 61 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 136 (225)
+......+.||||||+++|.......+..+|++|+|+|+++... ++....+...+......+.| +++++||+|+..
T Consensus 90 ~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 90 FETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred EecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 44556789999999999999999999999999999999987532 21111222222222223667 999999999954
Q ss_pred CCC------CCHHHHHHHHHHcC------CeEEEeccCCCCCHHHHHH
Q 027292 137 QRA------VPTEDAKEFAQKEG------LFFLETSALEATNVENAFM 172 (225)
Q Consensus 137 ~~~------~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~f~ 172 (225)
... ...+++..+...++ ++++++||++|.|+.++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 211 11223444454544 4699999999999999765
No 146
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=4.8e-21 Score=155.11 Aligned_cols=119 Identities=21% Similarity=0.270 Sum_probs=95.4
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS----------RRQSFDHIPRWLEELRSHA-DKNIVIILIGNKS 132 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 132 (225)
..+.+++|||+|++.++..|..++++++++|||+|++ +..++.....|+..+.... ..+.|++|++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 3578999999999999999999999999999999765 4556666666776665543 2579999999999
Q ss_pred CCCCCC----------------CCCHHHHHHHHH----------HcCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292 133 DLEEQR----------------AVPTEDAKEFAQ----------KEGLFFLETSALEATNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 133 Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~ 182 (225)
|+.+.+ ..+.+++.++.. ..++.++++||+++.+|+.+|+.+.+.+++..
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 985322 356777777642 34567899999999999999999999998753
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=3.2e-21 Score=165.03 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=100.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCC-----------------------------CCCcceeeeEEEEEEECCEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLD-----------------------------SKATIGVEFQTRTLVIQHKSV 66 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 66 (225)
..+||+++|++++|||||+++|++...... .....+++.......+.....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 469999999999999999999976411100 011113333333344445667
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHH------hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292 67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFD------HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV 140 (225)
Q Consensus 67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 140 (225)
.+.||||||+++|......++..+|++|+|+|+++..... +..+.+..+.. .. ..|+|||+||+|+.+.+..
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~-~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG-IHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TT-CCCEEEEEECGGGGTTCHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cC-CCcEEEEEECcCcccchHH
Confidence 8999999999999999999999999999999999864322 11122222222 11 3569999999999763332
Q ss_pred CHHHH----HHHHHHc-----CCeEEEeccCCCCCHHHH
Q 027292 141 PTEDA----KEFAQKE-----GLFFLETSALEATNVENA 170 (225)
Q Consensus 141 ~~~~~----~~~~~~~-----~~~~~~~Sa~~~~~v~~~ 170 (225)
..+++ ..+.... +++++++||++|.|+.++
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 22332 3333333 357999999999999853
No 148
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.84 E-value=5.8e-21 Score=156.65 Aligned_cols=120 Identities=20% Similarity=0.232 Sum_probs=94.0
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS----------RRQSFDHIPRWLEELRSHA-DKNIVIILIGNKS 132 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 132 (225)
..+.+.+|||+|++.++.+|..++++++++|||||++ +..+++....|+..+.+.. ..+.|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 6778888888888877653 2579999999999
Q ss_pred CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEeccCCCCCHHHHHHHHH
Q 027292 133 DLEEQRA--V-------------------PTEDAKEFAQK----------------EGLFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 133 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
|+.+.+. + ..+++.+++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843111 1 13455555432 123469999999999999999999
Q ss_pred HHHHHHHh
Q 027292 176 TEIFNIVN 183 (225)
Q Consensus 176 ~~~~~~~~ 183 (225)
+.+++...
T Consensus 341 ~~I~~~~l 348 (354)
T 2xtz_A 341 ETLRRRNL 348 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876543
No 149
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.84 E-value=1.8e-21 Score=164.95 Aligned_cols=153 Identities=19% Similarity=0.231 Sum_probs=101.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH--------hh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTS--------AY 86 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------~~ 86 (225)
..++|+|+|.+|+|||||+|+|++.... ....++++.+.....+..++ ..+.+|||||...+...++ .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4589999999999999999999987654 33334444444444455554 5678999999866544333 35
Q ss_pred hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027292 87 YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATN 166 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 166 (225)
+..+|++|+|+|+++..+... ..|+..+. +.|+++|+||+|+....... ....+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999998655443 44554442 36999999999997643322 111111 356799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEIFN 180 (225)
Q Consensus 167 v~~~f~~l~~~~~~ 180 (225)
++++|++|.+.+..
T Consensus 371 i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 371 IDSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887643
No 150
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=8.5e-22 Score=166.65 Aligned_cols=152 Identities=19% Similarity=0.168 Sum_probs=100.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch--------hhhhhhHhhhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE--------RYRAVTSAYYRG 89 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~~ 89 (225)
++|+|+|.+|||||||+|+|++...... ..+.+++...........+..+.+|||||.+ .+...+..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 6899999999999999999998765432 2233444444444455556689999999985 566777888999
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATNVE 168 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 168 (225)
+|++|+|+|+.+..+... .|+..+.. ..+.|+++|+||+|+..... ...++. .+++ .++++||++|.|+.
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence 999999999987655432 33333222 24789999999999865321 111222 3455 68999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 169 NAFMTVLTEIF 179 (225)
Q Consensus 169 ~~f~~l~~~~~ 179 (225)
++|+++.+.+.
T Consensus 154 ~L~~~i~~~l~ 164 (436)
T 2hjg_A 154 DLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHhcC
Confidence 99999887653
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.84 E-value=2.4e-21 Score=154.42 Aligned_cols=160 Identities=15% Similarity=0.173 Sum_probs=90.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC--------CCcceeeeEEEEEEECCEEEEEEEEeCCCch-------h
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDS--------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE-------R 78 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~ 78 (225)
+...++|+|+|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+.+|||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 456799999999999999999998876544332 3444445544444444455799999999962 2
Q ss_pred hhhhh-------Hhhhc-------------CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292 79 YRAVT-------SAYYR-------------GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 79 ~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (225)
+..+. ..++. .+|+++++++.....-...-..++..+.. +.|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 22222 22222 37899999977652221222334444432 79999999999986422
Q ss_pred CCC--HHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027292 139 AVP--TEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 139 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
... .+.+.+.....++.++++|+.++.++.+++++|.+.
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 111 123444555678899999999999999998877653
No 152
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.6e-21 Score=145.08 Aligned_cols=116 Identities=18% Similarity=0.299 Sum_probs=88.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCC---CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC-
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSL---DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRG- 89 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~- 89 (225)
....++|+|+|++|||||||+++|.+..+.. ...++.+. ......+.+|||||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 3567999999999999999999999987543 12222211 1144578899999999887777777765
Q ss_pred ---CCEEEEEEeCC-ChhhHHhHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCC
Q 027292 90 ---AVGAMLVYDIS-RRQSFDHIPRWLEELRSHA----DKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 90 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~ 138 (225)
+|++|+|||++ +..++..+..|+..+.... ..+.|+++|+||+|+.+..
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 8889998888887776542 3589999999999997643
No 153
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.84 E-value=1.3e-20 Score=152.01 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=104.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeEEEEEEECCEEEEEEEEeCCCch-h--------hhhhhHh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQE-R--------YRAVTSA 85 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~--------~~~~~~~ 85 (225)
...+|+|+|++|+|||||+|+|++..+.... .+.++....... +......+.+|||||.. . +......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi--~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI--HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEE--EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEE--EEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3458999999999999999999998654322 222111111111 22234678999999986 2 2233455
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCC
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEA 164 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 164 (225)
++..+|++++|+|+.+ +.....|+..... ..+.|+++++||+|+........+.+..+...+++ .++++||+++
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 6788999999999976 2233334432222 24789999999999875212122334455555665 5999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027292 165 TNVENAFMTVLTEI 178 (225)
Q Consensus 165 ~~v~~~f~~l~~~~ 178 (225)
.|++++++.+.+.+
T Consensus 160 ~~v~~l~~~i~~~l 173 (301)
T 1ega_A 160 LNVDTIAAIVRKHL 173 (301)
T ss_dssp TTHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999887643
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=7e-20 Score=155.04 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=106.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhh-----------
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAV----------- 82 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 82 (225)
+..++|+|+|++|||||||+|+|++.... ....+.++.+.....+.+++. .+.+|||+|...+...
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 45699999999999999999999987642 223333333344445555554 5789999997543221
Q ss_pred -hHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH-HHHH----cCCeE
Q 027292 83 -TSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE-FAQK----EGLFF 156 (225)
Q Consensus 83 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~ 156 (225)
...++..+|++++|+|+.+..+... ..+...+.. .+.|+++|+||+|+.+.+....++..+ +... ..+++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 1245678999999999987655443 222233332 378999999999997644433333322 2232 35789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHH
Q 027292 157 LETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 157 ~~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
+++||++|.|++++|+.+.+.+.+.
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999998876554
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.84 E-value=7.8e-23 Score=175.54 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=112.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAML 95 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (225)
..++|+|+|++++|||||+++|.+..+...+.++.+.++....+... ....+.||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 46789999999999999999999876655555554444433333221 23468899999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC-CHHHHHHH---HHHc--CCeEEEeccCCCCCHHH
Q 027292 96 VYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV-PTEDAKEF---AQKE--GLFFLETSALEATNVEN 169 (225)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~ 169 (225)
|+|+++....+.. ..+......+.|+++++||+|+.+.... ...+...+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~----e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTV----ESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHH----HHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHH----HHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 9999985443332 2223333347899999999999753221 11122211 1122 24799999999999999
Q ss_pred HHHHHHHHH
Q 027292 170 AFMTVLTEI 178 (225)
Q Consensus 170 ~f~~l~~~~ 178 (225)
+|+++...+
T Consensus 158 Lle~I~~l~ 166 (537)
T 3izy_P 158 LAEATIALA 166 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988765
No 156
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.83 E-value=2.8e-20 Score=153.10 Aligned_cols=119 Identities=21% Similarity=0.242 Sum_probs=91.3
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISR----------RQSFDHIPRWLEELRSHA-DKNIVIILIGNKSD 133 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D 133 (225)
.+.+.+|||+|++.++..|..++++++++|||+|+++ ..++.....|+..+.... ..+.|+||++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999998 678888888888877653 35799999999999
Q ss_pred CCCC----------------CCCCHHHHHHHHH-----------HcCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027292 134 LEEQ----------------RAVPTEDAKEFAQ-----------KEGLFFLETSALEATNVENAFMTVLTEIFNIVN 183 (225)
Q Consensus 134 l~~~----------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~ 183 (225)
+.+. ..+..+++..++. ..++.++++||+++.||.++|+++.+.+++...
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 8521 1256677776652 345779999999999999999999999987654
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.83 E-value=1e-20 Score=158.16 Aligned_cols=158 Identities=18% Similarity=0.132 Sum_probs=107.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCc-------CCC-------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNE-------FSL-------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA 81 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 81 (225)
..++|+++|+.++|||||+++|.+.. +.. ......+++.......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998731 100 0001122333333344445567899999999999988
Q ss_pred hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHHcC----
Q 027292 82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRA---VPTEDAKEFAQKEG---- 153 (225)
Q Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~---~~~~~~~~~~~~~~---- 153 (225)
....++..+|++|+|+|+++....+... ++..+.. .+.| +++++||+|+.+... ...+++++++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 8888999999999999999854333222 2333333 2678 789999999974211 11234556666665
Q ss_pred -CeEEEeccCCCCC----------HHHHHHHHHHH
Q 027292 154 -LFFLETSALEATN----------VENAFMTVLTE 177 (225)
Q Consensus 154 -~~~~~~Sa~~~~~----------v~~~f~~l~~~ 177 (225)
++++++||++|.+ +.++|+.+.+.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 5799999999764 66666666543
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=9.6e-21 Score=156.61 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=106.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEe
Q 027292 19 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 98 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 98 (225)
+|+++|++++|||||+++|. .+ +++.......+......+.+|||||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~--giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KK--GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EE--EEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hC--CEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 11 122222223344455679999999999998888888999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCCCCCCC--HHHHHHHHHHcC---CeEEE--eccCC---CCC
Q 027292 99 ISRRQSFDHIPRWLEELRSHADKNIVI-ILIGN-KSDLEEQRAVP--TEDAKEFAQKEG---LFFLE--TSALE---ATN 166 (225)
Q Consensus 99 ~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~~ 166 (225)
+. ....+..+|+..+... +.|. ++++| |+|+ +..... .++++++....+ +++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 43 3344455666555443 5676 88899 9998 422111 133444444433 68999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEIFNI 181 (225)
Q Consensus 167 v~~~f~~l~~~~~~~ 181 (225)
++++++.|.+.+-..
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998887554
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.83 E-value=2.3e-20 Score=157.70 Aligned_cols=154 Identities=21% Similarity=0.198 Sum_probs=105.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC------------CCCc-------------------ceeeeEEEEEEECC
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLD------------SKAT-------------------IGVEFQTRTLVIQH 63 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~------------~~~~-------------------~~~~~~~~~~~~~~ 63 (225)
...++|+++|+.++|||||+++|++...... ...+ .+++.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4579999999999999999999986531100 0011 01121122222334
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCCCCC--
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI-VIILIGNKSDLEEQRAV-- 140 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~~-- 140 (225)
....+.+|||||++.|...+..++..+|++|+|+|+++... .+..+|+..+... +. |+++|+||+|+.+....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence 55679999999999999888889999999999999997542 2334444444333 34 69999999999752211
Q ss_pred --CHHHHHHHHHHcC-----CeEEEeccCCCCCHHHHHH
Q 027292 141 --PTEDAKEFAQKEG-----LFFLETSALEATNVENAFM 172 (225)
Q Consensus 141 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~f~ 172 (225)
..+++..++..++ ++++++||++|.|+.++|+
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1234556666677 6799999999999998544
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.83 E-value=3.7e-21 Score=161.29 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=104.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC--------cCCCC-------CCCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN--------EFSLD-------SKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (225)
....++|+++|++++|||||+++|.+. .+... .....+++.......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 346799999999999999999999873 11100 001223333333444555567889999999999
Q ss_pred hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-
Q 027292 79 YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV---PTEDAKEFAQKEG- 153 (225)
Q Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 153 (225)
|......++..+|++|+|+|+++... .+..+|+..+... +.| +++++||+|+.+.... ..+++.+++...+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 99888899999999999999987543 3345555555443 678 8899999999742111 1224555666665
Q ss_pred ----CeEEEeccCCCCC
Q 027292 154 ----LFFLETSALEATN 166 (225)
Q Consensus 154 ----~~~~~~Sa~~~~~ 166 (225)
++++++||++|.|
T Consensus 164 ~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 164 PGDEVPVIRGSALLALE 180 (405)
T ss_dssp CTTTSCEEECCHHHHHH
T ss_pred cccCCCEEEccHHHhhh
Confidence 5799999999976
No 161
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.9e-21 Score=159.40 Aligned_cols=164 Identities=12% Similarity=0.219 Sum_probs=90.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCC-CCC--------CcceeeeEEEEEEECCEEEEEEEEeCCCc-------hh
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSL-DSK--------ATIGVEFQTRTLVIQHKSVKAQIWDTAGQ-------ER 78 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~ 78 (225)
+..++|+|+|++|+|||||+++|++..... .+. ++.+.......+...+..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 346899999999999999999987653322 221 33333333333334556678999999998 66
Q ss_pred hhhhhH-------hhhcCC-------------CEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292 79 YRAVTS-------AYYRGA-------------VGAMLVYDISRRQSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ 137 (225)
Q Consensus 79 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (225)
+..++. .++..+ |+++++++.. ..++..+. .|+..+ ..++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 665554 444332 4455555532 23344433 344433 347999999999999754
Q ss_pred CCCCH--HHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q 027292 138 RAVPT--EDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 184 (225)
Q Consensus 138 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~~~ 184 (225)
+.+.. +.+..++..++++++++||+++.+ ++.|.++.+.+.+....
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 33222 355666667789999999999999 89999999988776543
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.82 E-value=2.3e-21 Score=163.85 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=104.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--cCCCCC---------------------------CCcceeeeEEEEEEECCEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARN--EFSLDS---------------------------KATIGVEFQTRTLVIQHKS 65 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 65 (225)
...++|+++|+.++|||||+++|++. .+.... ....+++.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35689999999999999999999864 221100 0011222222223344556
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc----CCCC-cEEEEEeCCCCCCCCC-
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA----DKNI-VIILIGNKSDLEEQRA- 139 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~-piilv~nK~Dl~~~~~- 139 (225)
..+.+|||||+++|...+..++..+|++|+|+|+++ .+++....|.....++. ..+. |+++++||+|+.+...
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 789999999999999999999999999999999998 55554433332222211 1244 6899999999976211
Q ss_pred -----CCHHHHHHHHHHcC-----CeEEEeccCCCCCHHHHHH
Q 027292 140 -----VPTEDAKEFAQKEG-----LFFLETSALEATNVENAFM 172 (225)
Q Consensus 140 -----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~f~ 172 (225)
...++++.++...+ ++++++||++|.|+.++++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 11244566666665 6799999999999986654
No 163
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=2.5e-20 Score=151.45 Aligned_cols=118 Identities=18% Similarity=0.246 Sum_probs=94.9
Q ss_pred CEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhc-CCCCcEEEEEeC
Q 027292 63 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIS----------RRQSFDHIPRWLEELRSHA-DKNIVIILIGNK 131 (225)
Q Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK 131 (225)
...+.+++|||+|++.++..|..+++.++++|||+|++ +..++.....|+..+.... ..+.|++|++||
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence 34578999999999999999999999999999999998 5677777777877776553 258999999999
Q ss_pred CCCCCC---------------CCCCHHHHHHHHH-Hc--------------------------CCeEEEeccCCCCCHHH
Q 027292 132 SDLEEQ---------------RAVPTEDAKEFAQ-KE--------------------------GLFFLETSALEATNVEN 169 (225)
Q Consensus 132 ~Dl~~~---------------~~~~~~~~~~~~~-~~--------------------------~~~~~~~Sa~~~~~v~~ 169 (225)
+|+.+. .....+++.+++. ++ .+.++++||++..+|+.
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 998421 1124555544432 22 36689999999999999
Q ss_pred HHHHHHHHHHH
Q 027292 170 AFMTVLTEIFN 180 (225)
Q Consensus 170 ~f~~l~~~~~~ 180 (225)
+|+.+.+.+++
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=1.1e-19 Score=158.19 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=105.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEEC----------------CEEEEEEEEeCCCchhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQ----------------HKSVKAQIWDTAGQERY 79 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~~ 79 (225)
..++|+|+|++++|||||+++|.+..+........+.+......... .....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999998765432221111111111111100 11125899999999999
Q ss_pred hhhhHhhhcCCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC-------------HH
Q 027292 80 RAVTSAYYRGAVGAMLVYDISR---RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP-------------TE 143 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-------------~~ 143 (225)
..++..++..+|++|+|+|+++ +.+++.+. .+.. .+.|+++++||+|+....... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999998 55554432 2222 378999999999996432110 00
Q ss_pred ----------HHHHHHHHcC---------------CeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292 144 ----------DAKEFAQKEG---------------LFFLETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 144 ----------~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
+......+.+ ++++++||++|.|++++++++...+...
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 1111111212 3699999999999999999998877544
No 165
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.82 E-value=2.9e-20 Score=160.05 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=84.2
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCC---------------CCC-----CcceeeeEEEEEEECCEEEEEEEEeC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSL---------------DSK-----ATIGVEFQTRTLVIQHKSVKAQIWDT 73 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~l~Dt 73 (225)
.....+|+|+|++|+|||||+++|+...... ... ...+++.......+...++.+.||||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 4567899999999999999999996211000 000 00112222222333334578999999
Q ss_pred CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
||++.|...+..+++.+|++|+|+|+++.........|. .+.. .++|+++|+||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999866655554443 3332 3789999999999964
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.3e-20 Score=164.89 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=103.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-----------------------------CcceeeeEEEEEEECCEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-----------------------------ATIGVEFQTRTLVIQHKS 65 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 65 (225)
...++|+|+|++++|||||+++|++........ ...+++.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999998753322211 001222222233333456
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh---hHHhHHHHHHHHHhhcCCC-CcEEEEEeCCCCCCCCCCC
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ---SFDHIPRWLEELRSHADKN-IVIILIGNKSDLEEQRAVP 141 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~-~piilv~nK~Dl~~~~~~~ 141 (225)
..+.||||||++.|......++..+|++|+|+|+++.. ++.....+...+......+ .|+|||+||+|+.+.....
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 78999999999999999999999999999999998742 1111112222222222224 4599999999997632222
Q ss_pred H----HHHHHHHHHcC-----CeEEEeccCCCCCHHHH
Q 027292 142 T----EDAKEFAQKEG-----LFFLETSALEATNVENA 170 (225)
Q Consensus 142 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~ 170 (225)
. +++..+....+ ++++++||++|.|+.++
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2 22334444443 57999999999999876
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.81 E-value=8.1e-21 Score=161.76 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=92.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--cCCC----------------------CC-----CCcceeeeEEEEEEECCEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARN--EFSL----------------------DS-----KATIGVEFQTRTLVIQHKS 65 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~--~~~~----------------------~~-----~~~~~~~~~~~~~~~~~~~ 65 (225)
...++|+++|+.++|||||+++|++. .+.. .. ....+++.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45789999999999999999999752 1110 00 0001112211111222335
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRR---QSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRA-- 139 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-- 139 (225)
..+.||||||++.|.......+..+|++|+|+|+++. .+|+....|...+......+.| +++++||+|+.....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 6799999999999999888899999999999999985 3343222333333322233677 999999999964211
Q ss_pred ----CCHHHHHHHHHHc-------CCeEEEeccCCCCCHHHHH
Q 027292 140 ----VPTEDAKEFAQKE-------GLFFLETSALEATNVENAF 171 (225)
Q Consensus 140 ----~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~f 171 (225)
...+++..++... +++++++||++|.|+.++|
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 0122355666555 3569999999999998766
No 168
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=2.1e-20 Score=158.96 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=102.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC--------chhhhhhhHhhh
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG--------QERYRAVTSAYY 87 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~ 87 (225)
..++|+|+|.+|||||||+|+|++..+.... .+.+.+...........+..+.+||||| ++.+......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 3679999999999999999999987654222 2334555555555566677899999999 777888888899
Q ss_pred cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeccCCCCC
Q 027292 88 RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGL-FFLETSALEATN 166 (225)
Q Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 166 (225)
..+|++|+|+|..+..+ ....|+..+... .+.|+++|+||+|+.+.. ....++. .++. .++++||++|.|
T Consensus 101 ~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred hhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccc
Confidence 99999999999876332 223344333322 479999999999986421 1111111 2333 368999999999
Q ss_pred HHHHHHHHHHHH
Q 027292 167 VENAFMTVLTEI 178 (225)
Q Consensus 167 v~~~f~~l~~~~ 178 (225)
+.++++.+.+.+
T Consensus 172 v~~L~~~i~~~l 183 (456)
T 4dcu_A 172 LGDLLDAVAEHF 183 (456)
T ss_dssp HHHHHHHHHTTG
T ss_pred hHHHHHHHHhhc
Confidence 999999987654
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.80 E-value=1.3e-19 Score=165.03 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=107.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCc-------CCC-------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNE-------FSL-------DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY 79 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (225)
....++|+++|++++|||||+++|.+.. +.. ....+.+++.....+.++.....+.||||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4467999999999999999999998631 000 11122333333333445555678999999999999
Q ss_pred hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC--
Q 027292 80 RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQRAV---PTEDAKEFAQKEG-- 153 (225)
Q Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 153 (225)
......++..+|++|+|+|+++... .+..+|+..+... ++| +|+++||+|+.+.... ..+++..++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 9888889999999999999998543 2334455555443 678 7899999999752111 1234556666665
Q ss_pred ---CeEEEeccCCC--------CCHHHHHHHHHH
Q 027292 154 ---LFFLETSALEA--------TNVENAFMTVLT 176 (225)
Q Consensus 154 ---~~~~~~Sa~~~--------~~v~~~f~~l~~ 176 (225)
++++++||++| .|+.++|+.|.+
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 57999999999 346666665544
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=3.9e-20 Score=148.85 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=104.4
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC------CCcc-----------------e---eeeE-----------
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDS------KATI-----------------G---VEFQ----------- 55 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~------~~~~-----------------~---~~~~----------- 55 (225)
+....++|+|+|.+|||||||+|+|++..+.+.. .|+. + ++..
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999998764221 1210 0 0000
Q ss_pred ------------EEEEE-ECCEEEEEEEEeCCCch-------------hhhhhhHhhhcCCCEEE-EEEeCCChhhHHhH
Q 027292 56 ------------TRTLV-IQHKSVKAQIWDTAGQE-------------RYRAVTSAYYRGAVGAM-LVYDISRRQSFDHI 108 (225)
Q Consensus 56 ------------~~~~~-~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~ 108 (225)
...+. .......+.+|||||.. .+..+...++..++.+| +|+|+++..+....
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 00000 00113578999999953 45566777888888776 79999875443333
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--C-CeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 109 PRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKE--G-LFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
..|+..+. ..+.|+++|+||+|+.+......+.++...... + .+++++||+++.|++++|+++.+..
T Consensus 182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 182 LKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 33444432 347899999999999764432333222110111 2 3578899999999999999988743
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.80 E-value=3.3e-21 Score=164.25 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=106.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAM 94 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (225)
...++|+++|+.++|||||+++|....+.....+..+.+..... +...+..+.||||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~--v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYH--VETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCC--CCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEE--EEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 35679999999999999999999876554443333332222222 2223346889999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC--CCCHH--HHHHHHHHcC--CeEEEeccCCCCCHH
Q 027292 95 LVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR--AVPTE--DAKEFAQKEG--LFFLETSALEATNVE 168 (225)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~~v~ 168 (225)
+|+|+++....+.... +..+.. .+.|+++++||+|+.+.. .+..+ +...+...++ ++++++||++|.|++
T Consensus 80 LVVda~~g~~~qT~e~-l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEA-IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EEEETTTBSCTTTHHH-HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred EEeecccCccHHHHHH-HHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 9999987432222222 222222 378999999999996421 11100 0001112233 689999999999999
Q ss_pred HHHHHHHH
Q 027292 169 NAFMTVLT 176 (225)
Q Consensus 169 ~~f~~l~~ 176 (225)
++|+++..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99998864
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.79 E-value=1.1e-19 Score=154.36 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=102.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCc--CCCC------------------C----C-----CcceeeeEEEEEEECCEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNE--FSLD------------------S----K-----ATIGVEFQTRTLVIQHKS 65 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~--~~~~------------------~----~-----~~~~~~~~~~~~~~~~~~ 65 (225)
...++|+++|++++|||||+++|++.. +... + . ...+++.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 356999999999999999999998641 1100 0 0 001122222222334455
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh---hHH---hHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCC
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ---SFD---HIPRWLEELRSHADKNIV-IILIGNKSDLEEQR 138 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 138 (225)
..+.||||||++.|......++..+|++|+|+|+++.. +++ +..+++..+.. .+.| +++++||+|+.+..
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTTC
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccCC
Confidence 78999999999999999999999999999999999752 221 22222222222 2565 99999999997421
Q ss_pred CC----CHHHHHHHHHHcC-----CeEEEeccCCCCCHHHH
Q 027292 139 AV----PTEDAKEFAQKEG-----LFFLETSALEATNVENA 170 (225)
Q Consensus 139 ~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~ 170 (225)
.. ..++++.++...+ ++++++||++|.|+.++
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11 1233555556665 57999999999998754
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=6.6e-19 Score=134.42 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=99.3
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch----------hhhhh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE----------RYRAV 82 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~ 82 (225)
+.....+|+|+|++|+|||||+++|++..+.....++.+.......+..++ .+.+|||||.. .+...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence 344568999999999999999999998764333344444444433333322 57799999973 23333
Q ss_pred hHhhh---cCCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC--
Q 027292 83 TSAYY---RGAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEG-- 153 (225)
Q Consensus 83 ~~~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~-- 153 (225)
...++ ..++++++++|+.+..+.. .+..|+. . .+.|+++++||+|+....+ ...+.++.++...+
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~ 172 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 172 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence 33344 5789999999998754432 2333332 1 3789999999999864211 11234445555554
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHH
Q 027292 154 LFFLETSALEATNVENAFMTVLTEI 178 (225)
Q Consensus 154 ~~~~~~Sa~~~~~v~~~f~~l~~~~ 178 (225)
+.++++|++++.++++++++|.+.+
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CceEEEeecCCCCHHHHHHHHHHHH
Confidence 4588999999999999999887765
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.78 E-value=4e-18 Score=134.83 Aligned_cols=124 Identities=14% Similarity=0.131 Sum_probs=85.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYR------ 88 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------ 88 (225)
..++|+|+|.+|+|||||+++|++....... .+..+.......+..+ +..+.+|||||++.+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--CeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 5799999999999999999999997753222 2222333333333333 458899999998776554433332
Q ss_pred ---CCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCCCCCCH
Q 027292 89 ---GAVGAMLVYDISRRQSFDHI-PRWLEELRSHADKN--IVIILIGNKSDLEEQRAVPT 142 (225)
Q Consensus 89 ---~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~ 142 (225)
.+|++++|++++... +... ..|+..+......+ .|+++|+||+|+...+....
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 171 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY 171 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence 789999999987644 3333 46777777665433 48999999999965444443
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.77 E-value=4.3e-18 Score=150.50 Aligned_cols=118 Identities=11% Similarity=0.110 Sum_probs=83.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC----------------cceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKA----------------TIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (225)
.....+|+|+|+.|+|||||+++|++......... ..++++......+....+.+.+|||||++
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 45678999999999999999999985322111000 01222222333333346789999999999
Q ss_pred hhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 78 RYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
.|......+++.+|++++|+|+.+..... ...|+..+... +.|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCCchh
Confidence 99998999999999999999988654332 23444444432 78999999999986
No 176
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=8.3e-19 Score=144.87 Aligned_cols=156 Identities=12% Similarity=0.094 Sum_probs=105.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEE--------------------------------------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTR-------------------------------------- 57 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 57 (225)
..+.|+|+|++|||||||+++|.+..+.+......+......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999776433322211000000
Q ss_pred --------------EEE-ECCEEEEEEEEeCCCchhh-------------hhhhHhhhcCCCEEEEEEeCCChhhHHhHH
Q 027292 58 --------------TLV-IQHKSVKAQIWDTAGQERY-------------RAVTSAYYRGAVGAMLVYDISRRQSFDHIP 109 (225)
Q Consensus 58 --------------~~~-~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (225)
.+. .......+.+|||||...+ ..+...++..+|++|+|++..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 000 0111235889999997665 566778899999999999876533222 3
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027292 110 RWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMT 173 (225)
Q Consensus 110 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~ 173 (225)
.|+..+......+.|+++|+||+|+.+......+....+...++.+|+++++..+.++++.+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 4555555555567899999999999865555555455455556778999999987776655443
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.76 E-value=2.1e-20 Score=163.16 Aligned_cols=151 Identities=24% Similarity=0.252 Sum_probs=81.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC-----------------------------CCCcceeeeEEEEEEECCEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLD-----------------------------SKATIGVEFQTRTLVIQHKS 65 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 65 (225)
...++|+|+|++++|||||+++|++...... .....+++.......+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 4578999999999999999999964210000 00111233333333344456
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh---hH---HhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCC
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ---SF---DHIPRWLEELRSHADKNIV-IILIGNKSDLEEQR 138 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 138 (225)
..+.||||||++.|.......+..+|++|+|+|+++.. .+ .+....+..+... +.| +|+|+||+|+.+..
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTTC
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccccccc
Confidence 78999999999999988888899999999999998632 11 1112222222222 565 99999999997521
Q ss_pred CCCH----HHHHHHH-HHcCC-----eEEEeccCCCCCHH
Q 027292 139 AVPT----EDAKEFA-QKEGL-----FFLETSALEATNVE 168 (225)
Q Consensus 139 ~~~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~~v~ 168 (225)
.... .++..+. ...++ +++++||++|.|+.
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 1111 2233333 33444 69999999999998
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=9.9e-18 Score=140.07 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=110.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh----hhhhh---HhhhcCC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER----YRAVT---SAYYRGA 90 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~---~~~~~~~ 90 (225)
..|+|+|++|||||||++.|.+........+..+.......+..++ ...+.+||+||... +..+. ...+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999988643222222222222223333332 35688999999632 11121 2234579
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027292 91 VGAMLVYDISRRQSFDHIPRWLEELRSHAD--KNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVE 168 (225)
Q Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 168 (225)
+.+++++|++ ...+..+..|...+..+.. ...|.++++||+|+... ...+.+.+.....+..++.+||+++.+++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999998 5567777777777665532 25789999999998753 22333445555567889999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027292 169 NAFMTVLTEIFNIV 182 (225)
Q Consensus 169 ~~f~~l~~~~~~~~ 182 (225)
+++++|.+.+.+..
T Consensus 314 eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 314 ALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886543
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.75 E-value=8.8e-18 Score=149.15 Aligned_cols=164 Identities=14% Similarity=0.187 Sum_probs=107.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC-CCcceeeeE-------EEEEE--------------------------
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDS-KATIGVEFQ-------TRTLV-------------------------- 60 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~-~~~~~~~~~-------~~~~~-------------------------- 60 (225)
...++|+|+|.+|+|||||+|+|++....+.. .+++..... ..+..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 35799999999999999999999987754432 333210000 00110
Q ss_pred --------------------ECCEE--EEEEEEeCCCchhh---hhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHH
Q 027292 61 --------------------IQHKS--VKAQIWDTAGQERY---RAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEEL 115 (225)
Q Consensus 61 --------------------~~~~~--~~~~l~Dt~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 115 (225)
.+... ..+.+|||||.... ......+++.+|++|+|+|+++..+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 00000 35899999996653 345567889999999999999877766665555444
Q ss_pred HhhcCCCCcEEEEEeCCCCCCCCCCCHH---H-------HHH-----HHHH--------cCCeEEEeccC----------
Q 027292 116 RSHADKNIVIILIGNKSDLEEQRAVPTE---D-------AKE-----FAQK--------EGLFFLETSAL---------- 162 (225)
Q Consensus 116 ~~~~~~~~piilv~nK~Dl~~~~~~~~~---~-------~~~-----~~~~--------~~~~~~~~Sa~---------- 162 (225)
.. .+.|+++|+||+|+........+ . +.. +... ....++++||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 32 36789999999999653211111 1 111 1111 12358999999
Q ss_pred ----CCCCHHHHHHHHHHHHHHH
Q 027292 163 ----EATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 163 ----~~~~v~~~f~~l~~~~~~~ 181 (225)
++.|+.++++.+.+.+...
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHHT
T ss_pred hhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999998877543
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.75 E-value=9.5e-18 Score=135.92 Aligned_cols=163 Identities=14% Similarity=0.123 Sum_probs=97.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-Ccceee---eEEE--------------------------------
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVE---FQTR-------------------------------- 57 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~---~~~~-------------------------------- 57 (225)
....++|+|+|.+|+|||||+|+|++..+.+... ..+... ....
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 3456899999999999999999999987632211 000000 0000
Q ss_pred ---------------------EEE-ECCEEEEEEEEeCCCchh-------------hhhhhHhhhcCCCEEEEEEeCCCh
Q 027292 58 ---------------------TLV-IQHKSVKAQIWDTAGQER-------------YRAVTSAYYRGAVGAMLVYDISRR 102 (225)
Q Consensus 58 ---------------------~~~-~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~ 102 (225)
.+. .......+.+|||||... +......++..+|++|+|+|..+.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000 111224689999999643 556677788999999999997432
Q ss_pred h-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC------CCCHHHHHHHHH
Q 027292 103 Q-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE------ATNVENAFMTVL 175 (225)
Q Consensus 103 ~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~v~~~f~~l~ 175 (225)
. .......++..+ ...+.|+++|+||+|+.+......+.++.....++..++++++.. +.|+.++++.+.
T Consensus 181 ~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 181 DLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp CSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred chhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 2 111111222222 234789999999999976443223322211112235577776554 678888888766
Q ss_pred HHHH
Q 027292 176 TEIF 179 (225)
Q Consensus 176 ~~~~ 179 (225)
..+-
T Consensus 258 ~~~~ 261 (315)
T 1jwy_B 258 LYFK 261 (315)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6553
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.74 E-value=1.1e-17 Score=148.50 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=84.2
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC------------------CCCcceeeeEEEEEEECCEEEEEEEEeCC
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLD------------------SKATIGVEFQTRTLVIQHKSVKAQIWDTA 74 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 74 (225)
..+...+|+|+|++|+|||||+++|+....... .....++...... +....+.+.+||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~--~~~~~~~i~liDTP 85 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT--CFWKDHRINIIDTP 85 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEE--EEETTEEEEEECCC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEE--EEECCeEEEEEECc
Confidence 456789999999999999999999984211000 0111111122222 22235789999999
Q ss_pred CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
|+..|...+..++..+|++|+|+|+.+..+......|.. +.. .+.|+++|+||+|+..
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999999999999999999999999998777666655653 333 2789999999999864
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=1.7e-17 Score=142.94 Aligned_cols=119 Identities=15% Similarity=0.178 Sum_probs=80.2
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCCC--------------------CCCcceeeeEEEEEEECCEEEEEEEEeC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSLD--------------------SKATIGVEFQTRTLVIQHKSVKAQIWDT 73 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 73 (225)
.....+|+|+|++|+|||||+++|+....... ..+..+++.......+....+.+.+|||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 35679999999999999999999986321110 0011122222222233334578999999
Q ss_pred CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
||++.|......++..+|++|+|+|+.+..... ...++..+ ...+.|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 999999988888999999999999998753322 12222222 234799999999999864
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.74 E-value=1e-17 Score=133.08 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=81.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH-------hh--
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTS-------AY-- 86 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~-- 86 (225)
..++|+|+|.+|+|||||+|+|++..+...... .+.+..............+.+|||||.+.+..... .+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 579999999999999999999998775332221 11222222233333456799999999866542211 12
Q ss_pred hcCCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCC--CcEEEEEeCCCCCCCC
Q 027292 87 YRGAVGAMLVYDISRRQSFDH-IPRWLEELRSHADKN--IVIILIGNKSDLEEQR 138 (225)
Q Consensus 87 ~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~ 138 (225)
...+|++|+|+|++.. ++.. ...|+..+......+ .|+++|+||+|+....
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2478999999998753 2333 246777776654433 6999999999996543
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=2.2e-16 Score=140.36 Aligned_cols=120 Identities=17% Similarity=0.098 Sum_probs=83.5
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCc--CCCC-----------C-----CCcceeeeEEEEEEEC-----CEEEEEE
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNE--FSLD-----------S-----KATIGVEFQTRTLVIQ-----HKSVKAQ 69 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~ 69 (225)
..+...+|+|+|+.++|||||+++|+... +... + ....++......+... +..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34567899999999999999999997531 1100 0 1111121121222221 2338899
Q ss_pred EEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 70 IWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
||||||+..|...+..+++.+|++|+|+|+++.........|.. +. ..+.|+++|+||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccc
Confidence 99999999999999999999999999999998655544444432 22 23789999999999854
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.71 E-value=3.1e-18 Score=138.03 Aligned_cols=165 Identities=12% Similarity=0.200 Sum_probs=86.1
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcC-cCCCCCCC------cceeeeEEEEEE--ECCEEEEEEEEeCCCc-------
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARN-EFSLDSKA------TIGVEFQTRTLV--IQHKSVKAQIWDTAGQ------- 76 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~-~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~l~Dt~G~------- 76 (225)
..+..++|+|+|++|+|||||+++|++. .++..+.+ +.+.......+. ..+....+.+|||+|.
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 3456799999999999999999998875 44333210 111111111222 2334567899999997
Q ss_pred hhhhhhhH-------hhhc-------------CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 77 ERYRAVTS-------AYYR-------------GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 77 ~~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
+.+..+.. .++. .+++++++.+.+. .+++.+. ...+.... .+.++++|+||.|+..
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCC
Confidence 55544433 3322 2345555555432 1222222 12233332 3678999999999975
Q ss_pred CCCC--CHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027292 137 QRAV--PTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV 182 (225)
Q Consensus 137 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~~ 182 (225)
.++. ..+++.+++..+++.+|++||+++ +++++|.++.+.+.+..
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 3222 234667788889999999999999 99999999998886543
No 186
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.71 E-value=7e-17 Score=134.00 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=96.2
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISR----------RQSFDHIPRWLEELRSHA-DKNIVIILIGNKSD 133 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D 133 (225)
.+.+.+|||+|++.++..|..+++.++++|||||+++ ..+++....|+..+.... ..+.|++||+||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 3889999999999999999999999999999999998 788999999999887653 35799999999999
Q ss_pred CCCCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEeccCCCCCHHHH
Q 027292 134 LEEQRA---V---------------------------PTEDAKEFA-----QK--------EGLFFLETSALEATNVENA 170 (225)
Q Consensus 134 l~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~v~~~ 170 (225)
+.+.+. + ..+++..++ .. ..+.+++|||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 843111 1 134455443 22 2456889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027292 171 FMTVLTEIFNIVN 183 (225)
Q Consensus 171 f~~l~~~~~~~~~ 183 (225)
|+++.+.+++...
T Consensus 376 F~~v~~~I~~~~l 388 (402)
T 1azs_C 376 FNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876644
No 187
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=2.8e-18 Score=138.32 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=109.1
Q ss_pred HHHHHHhcCcCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChh-hHHhHH
Q 027292 32 QILARFARNEFS-LDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQ-SFDHIP 109 (225)
Q Consensus 32 sLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 109 (225)
+|+.+++.+.|. ..+.||.+..+. ..+..++ .+.+||+ +++|..++..+++++|++|+|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888888 788899884443 2222222 7889999 8999999999999999999999999987 688889
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEeccCCCCCHHHHHHHHHH
Q 027292 110 RWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEG--LFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 110 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
.|+..+.. .+.|++||+||+|+.+.+. .++..+++..++ +.++++||++|.|++++|.++..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99987765 3799999999999975322 244667777777 88999999999999999998764
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=1.2e-16 Score=141.96 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=83.3
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhc--CcCCCC----C------------CCcceeeeEEEEEEECCEEEEEEEEeCC
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFAR--NEFSLD----S------------KATIGVEFQTRTLVIQHKSVKAQIWDTA 74 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~--~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 74 (225)
+.+...+|+|+|++|+|||||+++|+. +.+... . .+..+.......+. .....+.+||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~--~~~~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA--WEGHRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE--ETTEEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE--ECCeeEEEEECc
Confidence 345689999999999999999999985 221100 0 01111111112222 234779999999
Q ss_pred CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
|+..|...+..+++.+|++|+|+|+.+..+......|.. +.. .+.|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999998888999999999999999998766665555543 333 2789999999999864
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=136.80 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=80.7
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCC--------CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh----
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDS--------KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR---- 80 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---- 80 (225)
..+..++|+|+|++|+|||||++.|++..+.... .++.........+...+....+.+||++|...+.
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 4556789999999999999999999987653221 1111111111111222334578999999975431
Q ss_pred ---hh------------------hHhhhcCCCEEEEEEeCCCh-hhHHhHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027292 81 ---AV------------------TSAYYRGAVGAMLVYDISRR-QSFDHIP-RWLEELRSHADKNIVIILIGNKSDLEEQ 137 (225)
Q Consensus 81 ---~~------------------~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (225)
.+ ...++..+++.+++|..... .+++... .|+..+. .+.|+|+|+||+|+...
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccH
Confidence 11 11233444443444443322 2333332 5666553 27899999999998754
Q ss_pred CCCCH--HHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 138 RAVPT--EDAKEFAQKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 138 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
+.+.. ..+...+...++.++++|++++.++.++|..+..
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 33332 4566777888999999999999999987766654
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=1.6e-17 Score=138.41 Aligned_cols=85 Identities=16% Similarity=0.195 Sum_probs=47.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEE--E-------------------EECC-EEEEEEEEeCCC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRT--L-------------------VIQH-KSVKAQIWDTAG 75 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~l~Dt~G 75 (225)
++|+|+|.+|||||||+|+|++........+.++.+..... + .+++ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987643223222222221111 1 1122 357899999999
Q ss_pred chh----hhhhhH---hhhcCCCEEEEEEeCCCh
Q 027292 76 QER----YRAVTS---AYYRGAVGAMLVYDISRR 102 (225)
Q Consensus 76 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 102 (225)
... ...+.. ..++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 222333 346899999999999874
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=4e-17 Score=134.39 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=95.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC------Ccce--------------------eee--------------
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSK------ATIG--------------------VEF-------------- 54 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~------~~~~--------------------~~~-------------- 54 (225)
...++|+|+|.+|||||||+|+|++..+.+... |+.. +++
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 346899999999999999999999987642221 1100 000
Q ss_pred ---------EEEEEE-ECCEEEEEEEEeCCCch-------------hhhhhhHhhhcCCC-EEEEEEeCCChhhHHhHHH
Q 027292 55 ---------QTRTLV-IQHKSVKAQIWDTAGQE-------------RYRAVTSAYYRGAV-GAMLVYDISRRQSFDHIPR 110 (225)
Q Consensus 55 ---------~~~~~~-~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 110 (225)
....+. .......+.||||||.. .+..+...++..++ ++++|++++...... .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---H
Confidence 000000 01113569999999952 45556667776665 455566665422211 2
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH--HHHcC-CeEEEeccCCCCCHHHHHHHHHH
Q 027292 111 WLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF--AQKEG-LFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 111 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~-~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
|+..+......+.|+++|+||+|+.+......+..+.. ....+ ..++++||+++.|++++++++.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22333333445789999999999976433222221110 00122 24678999999999999998876
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.65 E-value=8.8e-17 Score=123.65 Aligned_cols=155 Identities=11% Similarity=0.066 Sum_probs=95.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeee--------------EEEEEEE----------------CCEE
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEF--------------QTRTLVI----------------QHKS 65 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~ 65 (225)
...+|+|+|.+|+|||||+++|+..............+. ....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 467999999999999999999987532111100000000 0011111 1123
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDA 145 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 145 (225)
..+.+|||+|..... ..+....+.+++|+|+.+... ....+... . +.|+++|+||+|+.+......+.+
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 568899999951111 011125688999999876432 11111111 1 478899999999964323455666
Q ss_pred HHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292 146 KEFAQKE--GLFFLETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 146 ~~~~~~~--~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
...+... +++++++||++|.|++++|++|.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 6666554 46899999999999999999999877554
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.65 E-value=1.3e-15 Score=131.83 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=83.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCc------------------CCC--CCCCcceeeeEEEEEEECCEEEEEEEEeCC
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNE------------------FSL--DSKATIGVEFQTRTLVIQHKSVKAQIWDTA 74 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 74 (225)
...=||.|+|+.++|||||..+|+... +.. ......+++.....+.+.+.++.++|+|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 356789999999999999999996310 000 001112233333333444566889999999
Q ss_pred CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
|+..|.......++.+|++|+|+|+...-..+....|... ..+ ++|.++++||+|...
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HHT---TCCEEEEEECTTSCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HHh---CCceEEEEecccchh
Confidence 9999999999999999999999999986555555555333 333 899999999999854
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=8.5e-15 Score=119.97 Aligned_cols=146 Identities=19% Similarity=0.145 Sum_probs=90.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchhhh--
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQERYR-- 80 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~-- 80 (225)
++|+|+|.+|||||||+|+|.+........+..+.+.....+.+++. ...+.+|||||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987643333332222222222333331 2578999999987643
Q ss_pred --hh---hHhhhcCCCEEEEEEeCCCh----------hhHHhHHHHHHHH------------------------------
Q 027292 81 --AV---TSAYYRGAVGAMLVYDISRR----------QSFDHIPRWLEEL------------------------------ 115 (225)
Q Consensus 81 --~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~------------------------------ 115 (225)
.+ ....++.+|++++|+|+.+. ++++.+..|..++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 22 23357899999999999862 2233222211111
Q ss_pred ----------H-------------------hh-cCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 027292 116 ----------R-------------------SH-ADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALE 163 (225)
Q Consensus 116 ----------~-------------------~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (225)
. .+ .....|+++++|+.|..-........+++++...+++++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 1 01 112489999999998642112234567778888899999999763
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.62 E-value=1e-17 Score=129.28 Aligned_cols=154 Identities=11% Similarity=0.110 Sum_probs=91.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeE------------EEEEEEC-CE------------------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQ------------TRTLVIQ-HK------------------ 64 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 64 (225)
..++|+|+|.+|||||||+++|+...+...+.++...++. ...+..+ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999987654433333333322 1111111 11
Q ss_pred -EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH
Q 027292 65 -SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE 143 (225)
Q Consensus 65 -~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 143 (225)
...+.++|++|.-... ..+-...+..+.++|......... .....+ +.|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence 0134555555521000 011122344556666432111100 001111 4678999999999753334566
Q ss_pred HHHHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 144 DAKEFAQKE--GLFFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 144 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
++..++... +++++++||++|.|++++|+++.+.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 677776654 5789999999999999999999887754
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.60 E-value=2.7e-15 Score=135.70 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=85.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCcCCC----------------CCCC--cceeeeEEEEEE------------ECC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARNEFSL----------------DSKA--TIGVEFQTRTLV------------IQH 63 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~ 63 (225)
.....||+|+|+.++|||||+++|+...-.. +..+ +.........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3567899999999999999999998641100 0111 111111111121 133
Q ss_pred EEEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 64 KSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
..+.+.||||||+.+|...+..+++.+|++|+|+|+.+..+.+....|..... .+.|+++|+||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 47899999999999999999999999999999999999877776666654332 378999999999986
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.59 E-value=2.6e-16 Score=129.67 Aligned_cols=104 Identities=17% Similarity=0.094 Sum_probs=69.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED 144 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 144 (225)
++.+.||||||... .....+..+|++|+|+|....+....+..+ -.+.|+++|+||+|+...... ...
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~-~~~ 238 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEA-RLA 238 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHH-HHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHH-HHH
Confidence 46789999999533 223345889999999998765443322111 124688999999998642111 111
Q ss_pred HHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 145 AKEFAQK----------EGLFFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 145 ~~~~~~~----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
..++... ++.+++++||++|.|+++++++|.+.+..
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1222221 25789999999999999999999887754
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.58 E-value=2.1e-15 Score=130.55 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=82.5
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCC---CCCCCcceeeeEEEEEEECCE-----------------------E-
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFS---LDSKATIGVEFQTRTLVIQHK-----------------------S- 65 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------------------~- 65 (225)
..+..++|+|+|.+|+|||||+|+|++..+. ....+++. ... .+..... +
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~ 137 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGN 137 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SEE-EEECCSSSEEECCC------------------
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eEE-EEEECCcccccCCceeeecCcccHHHHhhhcc
Confidence 3456799999999999999999999998764 23333321 110 0000000 0
Q ss_pred ----------------EEEEEEeCCCchh-----------hhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 027292 66 ----------------VKAQIWDTAGQER-----------YRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSH 118 (225)
Q Consensus 66 ----------------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 118 (225)
..+.||||||... |......++..+|++|+|+|+++....+....|+..+..
T Consensus 138 ~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~- 216 (550)
T 2qpt_A 138 TFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG- 216 (550)
T ss_dssp CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-
T ss_pred cccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-
Confidence 2588999999764 556677788999999999999875444455566655533
Q ss_pred cCCCCcEEEEEeCCCCCC
Q 027292 119 ADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 119 ~~~~~piilv~nK~Dl~~ 136 (225)
.+.|+++|+||+|+..
T Consensus 217 --~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 --HEDKIRVVLNKADMVE 232 (550)
T ss_dssp --CGGGEEEEEECGGGSC
T ss_pred --cCCCEEEEEECCCccC
Confidence 3689999999999875
No 199
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.55 E-value=1.5e-13 Score=122.56 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=84.0
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcC--------cCC----------CCCCCcceeeeEEEEEEEC-----CEEEEE
Q 027292 12 QKIDYVFKVVLIGDSAVGKSQILARFARN--------EFS----------LDSKATIGVEFQTRTLVIQ-----HKSVKA 68 (225)
Q Consensus 12 ~~~~~~~~I~vlG~~g~GKSsLi~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~ 68 (225)
.+.++.-||.|+|+.++|||||..+|+.. ... .+..+..++......+.+. ..++.+
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 34578889999999999999999998641 110 1112222222222233322 236889
Q ss_pred EEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 69 QIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 69 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
+|+|||||..|.......++.+|++|+|+|+...-..+....|.....+ ++|.++++||+|..
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence 9999999999999999999999999999999986555554555544433 78999999999974
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.55 E-value=1.7e-14 Score=118.86 Aligned_cols=154 Identities=15% Similarity=0.112 Sum_probs=93.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECC-------------------EEEEEEEEeCCCchh
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQH-------------------KSVKAQIWDTAGQER 78 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~ 78 (225)
++|+++|.+|+|||||+++|.+........+..+.........+.. ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999988653222222112222121222211 235789999999765
Q ss_pred hh-------hhhHhhhcCCCEEEEEEeCCCh----------hhHHhHHHHHHHH--------------------------
Q 027292 79 YR-------AVTSAYYRGAVGAMLVYDISRR----------QSFDHIPRWLEEL-------------------------- 115 (225)
Q Consensus 79 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~-------------------------- 115 (225)
.. ......++.+|++++|+|+.+. ++...+..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 42 1223457899999999999851 1222111110000
Q ss_pred ---------H----h-------------------hc-CCCCcEEEEEeCCCC--CCC-CCCCHHHHHHHHHHcCCeEEEe
Q 027292 116 ---------R----S-------------------HA-DKNIVIILIGNKSDL--EEQ-RAVPTEDAKEFAQKEGLFFLET 159 (225)
Q Consensus 116 ---------~----~-------------------~~-~~~~piilv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~ 159 (225)
. + +. ....|+++++||.|. .+. .....+.++++++..+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 0 0 00 123799999999974 222 1223566778888889999999
Q ss_pred ccCCCCCHHHHH
Q 027292 160 SALEATNVENAF 171 (225)
Q Consensus 160 Sa~~~~~v~~~f 171 (225)
||+....+.+++
T Consensus 242 SAk~E~el~eL~ 253 (368)
T 2dby_A 242 SARLEAELAELS 253 (368)
T ss_dssp CHHHHHHHHTSC
T ss_pred echhHHHHHHhc
Confidence 998765555443
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.53 E-value=4.4e-15 Score=130.80 Aligned_cols=115 Identities=19% Similarity=0.207 Sum_probs=83.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--cCCC------------CC--CCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh
Q 027292 18 FKVVLIGDSAVGKSQILARFARN--EFSL------------DS--KATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA 81 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~--~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 81 (225)
-||.|+|+.++|||||..+|+.. .... .. ....+++.....+.+.+.++.++|+|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 47999999999999999999741 1100 00 01113344444444566778899999999999999
Q ss_pred hhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 82 VTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
.....++.+|++|+|+|+...-..+....|... ... ++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a-~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHAL-RKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHH-HHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHH-HHc---CCCeEEEEecccccc
Confidence 999999999999999999975444444444433 333 788999999999753
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.51 E-value=7.6e-15 Score=120.51 Aligned_cols=104 Identities=12% Similarity=-0.009 Sum_probs=62.9
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED 144 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 144 (225)
++.+.++||+|.... .......+|++++|+|+.+....+.+.. .+ .+.|.++|+||+|+.+.... ...
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~ 233 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI 233 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence 356889999995321 2334678999999999986543222211 11 14678899999998631100 011
Q ss_pred HHHHHH----------HcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 145 AKEFAQ----------KEGLFFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 145 ~~~~~~----------~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
...+.. .++.+++.+||+++.|+++++++|.+.+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 122211 124578999999999999999999887643
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.2e-12 Score=107.83 Aligned_cols=155 Identities=14% Similarity=0.083 Sum_probs=98.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHh
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERY-------RAVTSA 85 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~ 85 (225)
.+....+|.|+|.|+||||||+|+|.+........+.++.+.....+.+.+ .+++++||||.-.- ......
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~ 145 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIA 145 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHH
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHH
Confidence 456678999999999999999999999776665566656666666666654 46889999995321 112234
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--------CCCCCHHHHHHHHHHcCCe
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA--DKNIVIILIGNKSDLEE--------QRAVPTEDAKEFAQKEGLF 155 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~ 155 (225)
.++.+|++++|+|+.++.. .......++.... ..+.|.++++||.|... ......++++.+...+.+.
T Consensus 146 ~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt 223 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRIN 223 (376)
T ss_dssp HHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCC
T ss_pred HHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhccc
Confidence 5678999999999997532 2222222332221 13567788899999742 2234566677776666543
Q ss_pred EEEeccCCCCCHHHHH
Q 027292 156 FLETSALEATNVENAF 171 (225)
Q Consensus 156 ~~~~Sa~~~~~v~~~f 171 (225)
.-++-...+...+++.
T Consensus 224 ~kpv~~~~nv~eddl~ 239 (376)
T 4a9a_A 224 SAEIAFRCDATVDDLI 239 (376)
T ss_dssp SEEEEECSCCCHHHHH
T ss_pred CCCeeecccCCHHHHH
Confidence 2222223334445543
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.48 E-value=1e-13 Score=123.04 Aligned_cols=160 Identities=13% Similarity=0.150 Sum_probs=96.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-Ccceeee---------------------------------------
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSK-ATIGVEF--------------------------------------- 54 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-~~~~~~~--------------------------------------- 54 (225)
-..++|+|+|.+++|||||+|+|++..+.+... ..+....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 456899999999999999999999977632221 1110000
Q ss_pred ---------EEEEEEE-CCEEEEEEEEeCCCchh-------------hhhhhHhhh-cCCCEEEEEEeCCChhhHHhHHH
Q 027292 55 ---------QTRTLVI-QHKSVKAQIWDTAGQER-------------YRAVTSAYY-RGAVGAMLVYDISRRQSFDHIPR 110 (225)
Q Consensus 55 ---------~~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~ 110 (225)
....+.+ ......+.|+||||... +..+...++ ..+|++++|+|+++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0000000 01122478999999432 333444444 57899999999987433222222
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH--HcC-CeEEEeccCCCCCHHHHHHHHHHH
Q 027292 111 WLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQ--KEG-LFFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 111 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~-~~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
++..+ ...+.|+++|+||+|+.+.............. ..+ .+++.+||++|.|++++++.+.+.
T Consensus 209 ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHH---CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHH---HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 33333 33478999999999998644433221110000 012 246789999999999999888763
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.47 E-value=6.8e-15 Score=120.50 Aligned_cols=104 Identities=14% Similarity=0.100 Sum_probs=65.3
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCH--
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPT-- 142 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-- 142 (225)
++.+.||||||...+.. .....+|++++|+|.........+.. .. .+.|.++|+||+|+.+......
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence 45799999999654432 24589999999999875533222111 00 1457889999999864211100
Q ss_pred HHHHHHHHHc-------CCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292 143 EDAKEFAQKE-------GLFFLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 143 ~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
++.+...... ..+++++||++|.|+++++++|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1122211222 456899999999999999999988764
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.46 E-value=5.2e-13 Score=105.12 Aligned_cols=111 Identities=14% Similarity=-0.017 Sum_probs=67.7
Q ss_pred EEEEEEeCCCchhhhhhhH------hhhcCCCEEEEEEeCCChhhHHhHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292 66 VKAQIWDTAGQERYRAVTS------AYYRGAVGAMLVYDISRRQSFDHIPR-WLEELRSHADKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (225)
+.+.+|||||...+..... ..+.. +++|+++|.........+.. +..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5789999999876543321 23455 88888998764322222211 1111111112268999999999986522
Q ss_pred CCCHHHHHHH----------------------------HHHcC--CeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292 139 AVPTEDAKEF----------------------------AQKEG--LFFLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 139 ~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
. .+++.++ +..++ .+++++||+++.|++++++++.+.+-
T Consensus 188 ~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 1 1111111 23333 47999999999999999999887653
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.39 E-value=4.6e-13 Score=107.78 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=78.9
Q ss_pred chhhhhhhHhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHHcC
Q 027292 76 QERYRAVTSAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVP-TEDAKEFAQKEG 153 (225)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 153 (225)
++++..+...++.++|++++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.+...+. .++...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6677777888999999999999999886 88888999987765 379999999999997532111 344556667778
Q ss_pred CeEEEeccCCCCCHHHHHHHHH
Q 027292 154 LFFLETSALEATNVENAFMTVL 175 (225)
Q Consensus 154 ~~~~~~Sa~~~~~v~~~f~~l~ 175 (225)
++++++||+++.|++++|+.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998764
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.34 E-value=1.1e-12 Score=107.02 Aligned_cols=104 Identities=11% Similarity=0.058 Sum_probs=62.8
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027292 65 SVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTED 144 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 144 (225)
+..+.|+||+|..... ......+|.+++|+|....+..+.+..+ +. +.+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence 4578999999964322 1235689999999998644322111111 11 23457777999975321111112
Q ss_pred HHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292 145 AKEFAQK----------EGLFFLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 145 ~~~~~~~----------~~~~~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
.+.+... +..+++.+|+.++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2333221 2456899999999999999998887653
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.26 E-value=1.4e-10 Score=96.06 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=61.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcC-CCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchh
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEF-SLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQER 78 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 78 (225)
..-.+|+|+|.+|+|||||+|.|++... .....|.++.+.....+.+.+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457999999999999999999999765 4455555455555555555431 13588999999432
Q ss_pred -------hhhhhHhhhcCCCEEEEEEeCCC
Q 027292 79 -------YRAVTSAYYRGAVGAMLVYDISR 101 (225)
Q Consensus 79 -------~~~~~~~~~~~~d~~i~v~d~~~ 101 (225)
+.......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234456789999999999864
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.25 E-value=6.6e-12 Score=103.87 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=52.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCchhh
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHK---------------SVKAQIWDTAGQERY 79 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 79 (225)
...++|+|+|.+|+|||||+|+|.+........+..+.+.....+.+.+. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34689999999999999999999988765444455445444444444331 235899999997764
Q ss_pred hh-------hhHhhhcCCCEEEEEEeCCCh
Q 027292 80 RA-------VTSAYYRGAVGAMLVYDISRR 102 (225)
Q Consensus 80 ~~-------~~~~~~~~~d~~i~v~d~~~~ 102 (225)
.+ .+..+++.+|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 43 455678899999999998753
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=92.83 Aligned_cols=102 Identities=10% Similarity=0.017 Sum_probs=68.1
Q ss_pred CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHH----hhc-CCCCcEEEEEeCC-CCCCCCCCCHHHHHHH
Q 027292 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELR----SHA-DKNIVIILIGNKS-DLEEQRAVPTEDAKEF 148 (225)
Q Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~----~~~-~~~~piilv~nK~-Dl~~~~~~~~~~~~~~ 148 (225)
|++.++.+|..|+.++|++|||+|.+|.+-.+ ....+..+. +.. ..+.|++|++||. |+.. ..+..++.+.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~ 187 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHE 187 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHH
Confidence 78889999999999999999999999865433 333332222 221 2478999999995 6753 4555554433
Q ss_pred HH----HcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027292 149 AQ----KEGLFFLETSALEATNVENAFMTVLTEIF 179 (225)
Q Consensus 149 ~~----~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~ 179 (225)
.. .....+..|||.+|+|+.+.++||.+.+.
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 21 12345899999999999999999987654
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.05 E-value=1.8e-10 Score=90.58 Aligned_cols=105 Identities=9% Similarity=0.023 Sum_probs=73.2
Q ss_pred CCchhhhhhhHhhhcCCCEEEEEEeCCChhhHH---hHHHHHHHHHhhc-CCCCcEEEEEeC-CCCCCCCCCCHHHHHHH
Q 027292 74 AGQERYRAVTSAYYRGAVGAMLVYDISRRQSFD---HIPRWLEELRSHA-DKNIVIILIGNK-SDLEEQRAVPTEDAKEF 148 (225)
Q Consensus 74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~piilv~nK-~Dl~~~~~~~~~~~~~~ 148 (225)
.|++..+.+|..|+.++|++|||+|.+|.+-++ ++.++...+.+.. ..+.|++|++|| .|+.. ..+..++.+.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e~ 272 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHE 272 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHHH
Confidence 467889999999999999999999999876443 2222222232221 248999999996 58754 4555554433
Q ss_pred HH----HcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027292 149 AQ----KEGLFFLETSALEATNVENAFMTVLTEIFN 180 (225)
Q Consensus 149 ~~----~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~ 180 (225)
.. .....+..|||.+|+|+.+.++||.+.+..
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 21 123448999999999999999999987643
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.01 E-value=1.6e-09 Score=89.43 Aligned_cols=96 Identities=20% Similarity=0.259 Sum_probs=74.6
Q ss_pred CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH----HHH
Q 027292 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE----FAQ 150 (225)
Q Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~ 150 (225)
..+.|.+++..+.+.+|++++|+|+.++. ..|...+.+... +.|+++|+||+|+.+. ....+...+ +++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 46889999999999999999999999753 456666666554 7899999999999753 333344443 356
Q ss_pred HcCC---eEEEeccCCCCCHHHHHHHHHHH
Q 027292 151 KEGL---FFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 151 ~~~~---~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
..+. .++.+||++|.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 69999999999999999988653
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.91 E-value=1.2e-10 Score=96.19 Aligned_cols=136 Identities=13% Similarity=0.095 Sum_probs=81.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC------cCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhh
Q 027292 18 FKVVLIGDSAVGKSQILARFARN------EFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYR--------AVT 83 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~ 83 (225)
.+|+++|.+|+|||||+|+|++. .......+. ++.....+.... .+.++||||..... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG--TTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT--SSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC--eEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999875 222222222 233333333332 27899999943221 111
Q ss_pred Hhhh--cCCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027292 84 SAYY--RGAVGAMLVYDISRR---QSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLE 158 (225)
Q Consensus 84 ~~~~--~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 158 (225)
..++ ...|+++++++.... ..+.. +......+.|+++++||.|...... .......+.+..+..+.+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g~~l~p 309 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRRSFVCYMANELTVHRTK-LEKADSLYANQLGELLSP 309 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBTTTBCS
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCceEEEEecCCccccccc-HHHHHHHHHHhcCCccCC
Confidence 2222 678999999998432 11111 1222234789999999999865332 233345566667766666
Q ss_pred eccCCCCC
Q 027292 159 TSALEATN 166 (225)
Q Consensus 159 ~Sa~~~~~ 166 (225)
.++.+..+
T Consensus 310 ~~~~~~~~ 317 (369)
T 3ec1_A 310 PSKRYAAE 317 (369)
T ss_dssp SCGGGTTT
T ss_pred CCchhhhh
Confidence 66554333
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.87 E-value=1.7e-09 Score=92.40 Aligned_cols=152 Identities=15% Similarity=0.097 Sum_probs=83.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc------CcCCC----CCCCc-----------ceeeeEEEEEE-------------
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFAR------NEFSL----DSKAT-----------IGVEFQTRTLV------------- 60 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~------~~~~~----~~~~~-----------~~~~~~~~~~~------------- 60 (225)
.....|+|+|.+||||||++++|.. ..... .+.+. .+..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999983 21100 00000 00111110000
Q ss_pred ECCEEEEEEEEeCCCchhhh-hhh---Hhh--hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcE-EEEEeCCC
Q 027292 61 IQHKSVKAQIWDTAGQERYR-AVT---SAY--YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVI-ILIGNKSD 133 (225)
Q Consensus 61 ~~~~~~~~~l~Dt~G~~~~~-~~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 133 (225)
.....+.+.||||||..... .+. ... ...+|.+++|+|+....... .....+.+. .|+ ++|+||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCc
Confidence 00134578999999965321 111 111 22789999999998743311 112223221 454 78899999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeE------------------EEeccCCCCC-HHHHHHHHHHH
Q 027292 134 LEEQRAVPTEDAKEFAQKEGLFF------------------LETSALEATN-VENAFMTVLTE 177 (225)
Q Consensus 134 l~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-v~~~f~~l~~~ 177 (225)
..... . .+.......+.++ +.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~--g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKG--G--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCC--T--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccch--H--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 86421 1 1222334455543 2368888888 88888887654
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.85 E-value=6.1e-09 Score=85.95 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=72.0
Q ss_pred CchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 027292 75 GQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEF----AQ 150 (225)
Q Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~ 150 (225)
.++.|.++...++..++++++|+|+.++.+ .|...+.+... +.|+++|+||+|+.+. ....+...++ ++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence 478899999999999999999999998663 34444444444 7899999999999763 3333444443 55
Q ss_pred HcCC---eEEEeccCCCCCHHHHHHHHHHH
Q 027292 151 KEGL---FFLETSALEATNVENAFMTVLTE 177 (225)
Q Consensus 151 ~~~~---~~~~~Sa~~~~~v~~~f~~l~~~ 177 (225)
..+. .++.+||++|.|++++++.+.+.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 5676 68999999999999999988654
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.84 E-value=1.1e-10 Score=96.41 Aligned_cols=135 Identities=10% Similarity=0.106 Sum_probs=75.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCC-----CCCCcceeeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhH
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSL-----DSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRA--------VTS 84 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~ 84 (225)
.+|+++|.+|+|||||+|+|++..... ......+++.....+..... +.++||||...... ...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999998853211 01111223333333333322 78999999533211 111
Q ss_pred hh--hcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEec
Q 027292 85 AY--YRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETS 160 (225)
Q Consensus 85 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (225)
.+ ....+.++++++.........+. .+......+.|+++++||.|...... .......+.+..+..+++.+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCc
Confidence 11 35678889998874211111110 01122234789999999999875322 23334445566665544444
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.80 E-value=8.8e-09 Score=85.98 Aligned_cols=115 Identities=21% Similarity=0.282 Sum_probs=59.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCC--cceeeeEEEEEEECC--EEEEEEEEeCCCchhh-------------
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKA--TIGVEFQTRTLVIQH--KSVKAQIWDTAGQERY------------- 79 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~------------- 79 (225)
.++++|+|++|+|||||++.|++..+...... ..+.......+.... ....+.++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 46799999999999999999988643211110 111112222222222 2346889999873211
Q ss_pred -----hhhhHhh---------hcC--CCE-EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 80 -----RAVTSAY---------YRG--AVG-AMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 80 -----~~~~~~~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
......+ ... +|+ ++|+.|....-+... ...+... ..+.|+|+|.||+|...
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L-~~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKL-DSKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHT-CSCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHH-hhCCCEEEEEcchhccc
Confidence 1111111 111 233 555666654322222 1222222 24899999999999754
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.72 E-value=4.8e-08 Score=77.16 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=68.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCC-------CcceeeeEEEEEEECC--EEEEEEEEeCCCchh---------
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSK-------ATIGVEFQTRTLVIQH--KSVKAQIWDTAGQER--------- 78 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~--------- 78 (225)
.++++|+|++|+|||||++.|++...+.... ...........+.... ....+.++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5799999999999999999998743222110 0000001111111111 223678999998211
Q ss_pred ---------hhhhhH----------hhhcCCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292 79 ---------YRAVTS----------AYYRGAVGAMLVYDISR-RQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 79 ---------~~~~~~----------~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (225)
+..... ..+..+++.++++|... .-.... ...+..+ ... .++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCCHH
Confidence 000000 01234688888888542 211111 2223333 232 8899999999976421
Q ss_pred CC--CHHHHHHHHHHcCCeEEE
Q 027292 139 AV--PTEDAKEFAQKEGLFFLE 158 (225)
Q Consensus 139 ~~--~~~~~~~~~~~~~~~~~~ 158 (225)
+. ....++......++.+|+
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 11 112233334556666554
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.69 E-value=3.9e-08 Score=78.13 Aligned_cols=101 Identities=17% Similarity=0.075 Sum_probs=69.5
Q ss_pred EeCCCch-hhhhhhHhhhcCCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH
Q 027292 71 WDTAGQE-RYRAVTSAYYRGAVGAMLVYDISRRQSFD--HIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE 147 (225)
Q Consensus 71 ~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 147 (225)
-..||+. .........+..+|++++|+|+.++.+.. .+..|+ .+.|.++|+||+|+.+.. ..+...+
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~~ 73 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWKE 73 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHHH
Confidence 3468876 34455666789999999999999877654 233332 378999999999997521 1122233
Q ss_pred HHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027292 148 FAQKEGLFFLETSALEATNVENAFMTVLTEIFNI 181 (225)
Q Consensus 148 ~~~~~~~~~~~~Sa~~~~~v~~~f~~l~~~~~~~ 181 (225)
+.+..+.+++.+||.++.|+.++++.+.+.+...
T Consensus 74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 4445578899999999999999999887776543
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.68 E-value=5.1e-07 Score=75.30 Aligned_cols=156 Identities=13% Similarity=0.151 Sum_probs=81.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc-eeeeEEEEEEECC-EEEEEEEEeCCCchhh----hhh-hHhhhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKATI-GVEFQTRTLVIQH-KSVKAQIWDTAGQERY----RAV-TSAYYRG 89 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~----~~~-~~~~~~~ 89 (225)
...|+|+|++|+|||||+|.+.+...+....... +.......+.+.. ....+.+||++|.... ... ....+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3479999999999999999999843222211110 1100000111111 1124789999985321 111 1112334
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------CCCCCCHHHH----HHHH----HHcC-
Q 027292 90 AVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE-------EQRAVPTEDA----KEFA----QKEG- 153 (225)
Q Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-------~~~~~~~~~~----~~~~----~~~~- 153 (225)
.+..++ ++..... .+-..+...+.. .+.|+++|.||.|+. .-+......+ +++. .+.+
T Consensus 149 ~~~~~~-lS~G~~~--kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 149 YDFFII-ISATRFK--KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp CSEEEE-EESSCCC--HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEE-eCCCCcc--HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455554 7765311 111112233333 268999999999873 1112233333 3332 1222
Q ss_pred --CeEEEecc--CCCCCHHHHHHHHHHHH
Q 027292 154 --LFFLETSA--LEATNVENAFMTVLTEI 178 (225)
Q Consensus 154 --~~~~~~Sa--~~~~~v~~~f~~l~~~~ 178 (225)
..++.+|+ .++.+++++.+.+.+.+
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 24788999 55566999888887665
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.46 E-value=5.1e-07 Score=75.74 Aligned_cols=136 Identities=17% Similarity=0.093 Sum_probs=75.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC------cCC----CCCCC-----------cceeeeEEEEEEE-------------
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARN------EFS----LDSKA-----------TIGVEFQTRTLVI------------- 61 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~------~~~----~~~~~-----------~~~~~~~~~~~~~------------- 61 (225)
....|+++|.+|+||||++..|... ... ..+.+ ..+..........
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999988741 100 00000 0011111000000
Q ss_pred CCEEEEEEEEeCCCchhhh-----hhhH-hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027292 62 QHKSVKAQIWDTAGQERYR-----AVTS-AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLE 135 (225)
Q Consensus 62 ~~~~~~~~l~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (225)
...++.+.|+||+|..... .+.. .....+|.+++|+|+...... ......+.+. -.+..+|+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCc
Confidence 0012678899999943211 1111 123367999999998864332 2222333332 23456888999976
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292 136 EQRAVPTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (225)
. ....+..+....+.++..++.
T Consensus 253 ~----~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 253 A----KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp S----SHHHHHHHHHTTCCCEEEEEC
T ss_pred c----cccHHHHHHHHHCCCEEEEEc
Confidence 4 233455566678888776665
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.43 E-value=2.1e-07 Score=73.95 Aligned_cols=59 Identities=20% Similarity=0.379 Sum_probs=35.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCch
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQE 77 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (225)
...++|+|+|.+|+|||||+|+|.+........ ..+++.....+.... .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 356899999999999999999999865332221 112222222233322 57899999953
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.38 E-value=1.4e-07 Score=74.19 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=35.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 78 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (225)
++++++|.+|+|||||+|+|.+...... .++.+++.....+... ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 6999999999999999999998665322 2222333322222222 2578999999653
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.25 E-value=1.5e-06 Score=72.88 Aligned_cols=91 Identities=16% Similarity=0.037 Sum_probs=54.4
Q ss_pred EEEEEEEeCCCchh--hh----hhhHh--hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027292 65 SVKAQIWDTAGQER--YR----AVTSA--YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEE 136 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~--~~----~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (225)
.+.+.++||||... .. ..... .....|.+++|+|+....... .....+.+. -.+..+|+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~---~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA---SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH---CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc---cCCcEEEEecccccc
Confidence 45688999999533 11 11111 122568999999998643322 223344433 234678899999753
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027292 137 QRAVPTEDAKEFAQKEGLFFLETSALEATNV 167 (225)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 167 (225)
....+.......+.|+..++. |+++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 334455666678899777765 4443
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.23 E-value=5e-06 Score=69.82 Aligned_cols=85 Identities=16% Similarity=0.062 Sum_probs=49.0
Q ss_pred EEEEEEEEeCCCchhhhh-h---hHh--hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-c-EEEEEeCCCCC
Q 027292 64 KSVKAQIWDTAGQERYRA-V---TSA--YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNI-V-IILIGNKSDLE 135 (225)
Q Consensus 64 ~~~~~~l~Dt~G~~~~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-iilv~nK~Dl~ 135 (225)
..+.+.|+||||...... + ... .+..+|.+++|+|+.... ........+. . .. | ..+|+||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~---~-~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK---E-AVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH---T-TSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh---h-cccCCeEEEEeCCCCc
Confidence 345689999999543211 1 111 122689999999987543 1222222222 1 34 5 78899999975
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEe
Q 027292 136 EQRAVPTEDAKEFAQKEGLFFLET 159 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~ 159 (225)
.. ...+..+....+.++..+
T Consensus 252 ~~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 252 AK----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ST----THHHHHHHHHSSCCEEEE
T ss_pred cc----hHHHHHHHHHHCCCEEEe
Confidence 31 123344666777776555
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.20 E-value=1.3e-06 Score=75.89 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=39.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcc-eeeeEEEEE--EE-CCEEEEEEEEeCCCch
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATI-GVEFQTRTL--VI-QHKSVKAQIWDTAGQE 77 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~ 77 (225)
...++|+|+|.+|+|||||+|+|++.........++ +.+.....+ .. ......+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 467899999999999999999999876432222111 111111111 11 1234568899999954
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.17 E-value=9.7e-07 Score=69.33 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=61.0
Q ss_pred CCCchhh-hhhhHhhhcCCCEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 027292 73 TAGQERY-RAVTSAYYRGAVGAMLVYDISRRQSFDH--IPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFA 149 (225)
Q Consensus 73 t~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 149 (225)
.|||... .......+..+|++++|+|+.++.+... +. | . +.|.++|+||+|+.+.. ..+....+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-l-------l--~k~~iivlNK~DL~~~~--~~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-F-------S--RKETIILLNKVDIADEK--TTKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-C-------T--TSEEEEEEECGGGSCHH--HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-h-------c--CCCcEEEEECccCCCHH--HHHHHHHHH
Confidence 4776532 2345667889999999999998765432 22 2 1 78999999999997521 112233444
Q ss_pred HHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027292 150 QKEGLFFLETSALEATNVENAFMTVLT 176 (225)
Q Consensus 150 ~~~~~~~~~~Sa~~~~~v~~~f~~l~~ 176 (225)
...+.++ .+||.++.|++++++.+.+
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 5567788 9999999999999887654
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.14 E-value=4.7e-07 Score=72.61 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=60.0
Q ss_pred hhHhhhcCCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcCCeEEE
Q 027292 82 VTSAYYRGAVGAMLVYDISRRQ-SFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRA--VPTEDAKEFAQKEGLFFLE 158 (225)
Q Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 158 (225)
+....+.++|.+++|+|+.++. +...+.+++..... .++|.+||+||+|+.+... ...+.+.+.....+.+++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 3445688999999999999754 34445555544433 3788899999999986321 0012344445556888999
Q ss_pred eccCCCCCHHHHHH
Q 027292 159 TSALEATNVENAFM 172 (225)
Q Consensus 159 ~Sa~~~~~v~~~f~ 172 (225)
+|+.++.|+++++.
T Consensus 156 ~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 156 TSSKDQDSLADIIP 169 (307)
T ss_dssp CCHHHHTTCTTTGG
T ss_pred EecCCCCCHHHHHh
Confidence 99998888776554
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.03 E-value=1.3e-05 Score=70.27 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCcCC
Q 027292 18 FKVVLIGDSAVGKSQILARFARNEFS 43 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~~~ 43 (225)
..|+|+|++|+|||||++.+.+-..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 34999999999999999999886433
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.00 E-value=1.2e-05 Score=64.33 Aligned_cols=92 Identities=16% Similarity=0.041 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCchh--hhh-hhH-----hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCC
Q 027292 65 SVKAQIWDTAGQER--YRA-VTS-----AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLE 135 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 135 (225)
.+.+.++||||... ... +.. .....+|.+++|+|+... .........+.. ..+ ..+|+||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 45689999999665 221 111 124478999999998642 222222333332 244 67788999975
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292 136 EQRAVPTEDAKEFAQKEGLFFLETSALEATNVEN 169 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 169 (225)
. ....+..+....+.++..++ .|+++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 3 23445567777888877765 4555543
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.95 E-value=1.7e-05 Score=64.80 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=57.4
Q ss_pred hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHHHH---HHHHcCCeEEEeccC
Q 027292 86 YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKE---FAQKEGLFFLETSAL 162 (225)
Q Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~ 162 (225)
...++|.+++|++.....+...+.+++...... +.|.+||+||+|+.+... .+.... .....|.+++.+|+.
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecC
Confidence 467899999987765333444556665554443 678899999999975321 111333 334567889999999
Q ss_pred CCCCHHHHHHHH
Q 027292 163 EATNVENAFMTV 174 (225)
Q Consensus 163 ~~~~v~~~f~~l 174 (225)
++.|++++...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999877643
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.88 E-value=1.4e-06 Score=74.04 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=62.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCcCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCchh--hhhhh--------H
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER--YRAVT--------S 84 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~--------~ 84 (225)
...+.|+++|.+|+||||+.++|....... ...+.............+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999997643211 111100000000000011112345789988733 23332 4
Q ss_pred hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEE
Q 027292 85 AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIG 129 (225)
Q Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 129 (225)
.++...++.++|+|.++. +.+....|+..+.+. +.+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 456667888999999986 455566777666654 34444443
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.72 E-value=3.9e-05 Score=62.07 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=50.8
Q ss_pred EEEEEeCCCchhhhhh----hHh--hhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCC
Q 027292 67 KAQIWDTAGQERYRAV----TSA--YYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAV 140 (225)
Q Consensus 67 ~~~l~Dt~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 140 (225)
.+.++|++|....... ... ..-..|-.+++.|..... .+......+.+.. +. .++++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~i-t~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--KI-DGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--CC-CEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--CC-CEEEEeCcCCcc----
Confidence 4667999995432211 111 112468889999966432 3333344444332 22 356779999643
Q ss_pred CHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027292 141 PTEDAKEFAQKEGLFFLETSALEATNVEN 169 (225)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 169 (225)
..-.+.......+.++..++ +|+++++
T Consensus 283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 283 RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 12335566777788877765 5555543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.68 E-value=0.00025 Score=59.57 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.+..-|.|+|.+++|||+|+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 4577799999999999999999986
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.30 E-value=0.0027 Score=53.27 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=44.9
Q ss_pred EEEEEEEeCCCchhhhh-hhH-----hhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCC
Q 027292 65 SVKAQIWDTAGQERYRA-VTS-----AYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIV-IILIGNKSDLEEQ 137 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 137 (225)
.+.+.|+||||...... +.. .....+|.+++|+|+..... .......+... .+ .-+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~----l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA----LPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH----SCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc----CCCeEEEEecCCCCcc
Confidence 45789999999543321 111 12447899999999875322 22222333222 23 2467899997532
Q ss_pred CCCCHHHHHHHHHHcCCeE
Q 027292 138 RAVPTEDAKEFAQKEGLFF 156 (225)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (225)
. ..+..+....+.++
T Consensus 256 -~---g~~l~i~~~~~~Pi 270 (433)
T 2xxa_A 256 -G---GAALSIRHITGKPI 270 (433)
T ss_dssp -C---THHHHHHHHHCCCE
T ss_pred -H---HHHHHHHHHHCCCe
Confidence 1 23334555566653
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.24 E-value=0.00017 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.679 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.+++|+|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.23 E-value=0.00077 Score=54.28 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=47.4
Q ss_pred EEEEEEEeCCCchhhhh-hhH------hhh-----cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027292 65 SVKAQIWDTAGQERYRA-VTS------AYY-----RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKS 132 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~-~~~------~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 132 (225)
.+.+.|+||||...... +.. ..+ ..+|.+++|++.... .+.+.. +......-...-+|+||.
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~----~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ----AEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH----HHHHTTTSCCCEEEEECG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH----HHHHhhcCCCcEEEEeCC
Confidence 35789999999654321 110 111 247899999998732 222222 222211111234678999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCeEEEec
Q 027292 133 DLEEQRAVPTEDAKEFAQKEGLFFLETS 160 (225)
Q Consensus 133 Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (225)
|.... ...+..+....+.++..+.
T Consensus 265 d~~~~----~g~~~~~~~~~~~Pi~~i~ 288 (320)
T 1zu4_A 265 DSTSK----GGIGLAIKELLNIPIKMIG 288 (320)
T ss_dssp GGCSC----TTHHHHHHHHHCCCEEEEE
T ss_pred CCCCc----hhHHHHHHHHHCcCEEEEe
Confidence 97532 1245566677888865553
No 239
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.22 E-value=0.00033 Score=52.83 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=55.1
Q ss_pred EEEEEEEeCCCc-hhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHH
Q 027292 65 SVKAQIWDTAGQ-ERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTE 143 (225)
Q Consensus 65 ~~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 143 (225)
.+.+.++|+|+. .. ......+..+|.+|+++..+ ..+...+..++..+.... +.++.+|+|+.|.... ....
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD 139 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence 356889999986 32 23345677899999998875 445555666666665533 4568899999986430 1234
Q ss_pred HHHHHHHHcCCeEE
Q 027292 144 DAKEFAQKEGLFFL 157 (225)
Q Consensus 144 ~~~~~~~~~~~~~~ 157 (225)
++.+..++++.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 45555555665543
No 240
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.09 E-value=0.00038 Score=56.87 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcC
Q 027292 19 KVVLIGDSAVGKSQILARFARNEF 42 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~ 42 (225)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998654
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.09 E-value=0.00012 Score=58.65 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.++|+|++|+|||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 78999999999999999998753
No 242
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.08 E-value=0.00029 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999763
No 243
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.01 E-value=0.00036 Score=52.11 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.++|+|++|+|||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999876
No 244
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.94 E-value=0.0016 Score=52.03 Aligned_cols=22 Identities=50% Similarity=0.739 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.++|+|++|+|||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57999999999999999998 54
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.91 E-value=0.00048 Score=50.80 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
++|+|++|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999863
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.90 E-value=0.00051 Score=51.19 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-|+|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999774
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.89 E-value=0.00053 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.|+|+|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999875
No 248
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.89 E-value=0.002 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999988654
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.86 E-value=0.00056 Score=51.32 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-++|+|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999774
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.83 E-value=0.00071 Score=50.52 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
--|+|+|++|+|||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999999863
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.82 E-value=0.00063 Score=51.72 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-++|+|++|||||||++.|.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999874
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.80 E-value=0.00065 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 253
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.80 E-value=0.00063 Score=49.52 Aligned_cols=20 Identities=45% Similarity=0.554 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 027292 19 KVVLIGDSAVGKSQILARFA 38 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~ 38 (225)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 254
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.74 E-value=0.00083 Score=48.33 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.++|+|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999998754
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.73 E-value=0.00081 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-|+|+|++|||||||++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999875
No 256
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.73 E-value=0.0009 Score=49.51 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.69 E-value=0.0008 Score=50.53 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=22.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..-..|.|+|++|+|||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988764
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.67 E-value=0.00096 Score=48.25 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..|+|+|++|||||||++.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998763
No 259
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.66 E-value=0.00097 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998774
No 260
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.66 E-value=0.0013 Score=47.76 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|+|++|+|||||++.|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.62 E-value=0.0011 Score=48.83 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.++|+|++|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 262
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.62 E-value=0.0011 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999763
No 263
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.61 E-value=0.0048 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.61 E-value=0.0012 Score=47.46 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCCHHHHHHHH
Q 027292 18 FKVVLIGDSAVGKSQILARF 37 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l 37 (225)
+.|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 265
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.60 E-value=0.0011 Score=50.57 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998774
No 266
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.59 E-value=0.0011 Score=49.28 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292 18 FKVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
..|+|+|++|||||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999997753
No 267
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.58 E-value=0.0012 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998763
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.58 E-value=0.0013 Score=47.30 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..|+|.|.+||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998653
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.57 E-value=0.0013 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 270
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.57 E-value=0.0019 Score=47.99 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.......|+|.|.+||||||+.+.|..
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444557899999999999999998864
No 271
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.56 E-value=0.0013 Score=50.66 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.55 E-value=0.0014 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 273
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.54 E-value=0.0013 Score=48.94 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-.|+|+|++|+|||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.53 E-value=0.0017 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 275
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.52 E-value=0.0015 Score=49.11 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
++|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 276
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.52 E-value=0.0015 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 027292 18 FKVVLIGDSAVGKSQILARFA 38 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~ 38 (225)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 277
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.52 E-value=0.0014 Score=49.56 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999775
No 278
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.51 E-value=0.0014 Score=51.19 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999874
No 279
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.49 E-value=0.0013 Score=47.99 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.++|+|++|+|||+|++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998764
No 280
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.48 E-value=0.0015 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999774
No 281
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.48 E-value=0.0016 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999774
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.46 E-value=0.0015 Score=50.80 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999775
No 283
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.45 E-value=0.0016 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..|.|+|+.|+|||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988763
No 284
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.45 E-value=0.0016 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.+.|+|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998743
No 285
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.44 E-value=0.0018 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999774
No 286
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.44 E-value=0.0016 Score=50.86 Aligned_cols=22 Identities=41% Similarity=0.443 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999998774
No 287
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.44 E-value=0.0017 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999775
No 288
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.43 E-value=0.0018 Score=47.98 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 289
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.43 E-value=0.0018 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998775
No 290
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.42 E-value=0.011 Score=47.71 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.++|.|++|+|||||++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998877
No 291
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.42 E-value=0.0017 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 292
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.42 E-value=0.002 Score=47.91 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-.|+|+|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 293
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.42 E-value=0.0017 Score=49.99 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.41 E-value=0.0017 Score=50.67 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.++|+|++|+|||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999999876
No 295
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.41 E-value=0.0018 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.+|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 296
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.40 E-value=0.0023 Score=47.59 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
...+.|+|.|.+|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999865
No 297
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.40 E-value=0.0019 Score=47.22 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..-++|+|.+|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 456899999999999999999864
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.40 E-value=0.0018 Score=50.16 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998775
No 299
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.39 E-value=0.0019 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 300
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.38 E-value=0.0022 Score=51.16 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcC
Q 027292 19 KVVLIGDSAVGKSQILARFARNEF 42 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~~ 42 (225)
.++++|++|+|||||+|.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987543
No 301
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.38 E-value=0.002 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.37 E-value=0.0023 Score=46.93 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 303
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.37 E-value=0.0021 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..|+|.|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999763
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.36 E-value=0.0019 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
...|+|.|.+|||||||++.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998653
No 305
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.35 E-value=0.0021 Score=50.14 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999874
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.35 E-value=0.002 Score=47.93 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-..|+|+|++|+|||||++.|...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988764
No 307
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.35 E-value=0.0022 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999874
No 308
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.34 E-value=0.0021 Score=48.34 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 309
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.33 E-value=0.002 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998774
No 310
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.33 E-value=0.0026 Score=47.45 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
+.|+|+|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 311
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.32 E-value=0.0022 Score=48.45 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|.|+|++|+||||+++.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 312
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.31 E-value=0.0014 Score=49.32 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 313
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.31 E-value=0.0021 Score=49.90 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.++|+|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 314
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.31 E-value=0.0022 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999998763
No 315
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.31 E-value=0.0022 Score=49.08 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 027292 19 KVVLIGDSAVGKSQILARFA 38 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~ 38 (225)
-++|+|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 316
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.31 E-value=0.0026 Score=47.07 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
......|+|.|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 344578999999999999999999764
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.30 E-value=0.0027 Score=46.59 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..+|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998764
No 318
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.30 E-value=0.0028 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-..|+|.|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 319
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.30 E-value=0.0025 Score=48.64 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.....+|+|+|.+|+||||+.+.|..
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33457899999999999999998865
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.30 E-value=0.0031 Score=47.06 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=22.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.....|+|+|.+|+|||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34467999999999999999999764
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.30 E-value=0.0022 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998774
No 322
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.30 E-value=0.0013 Score=50.05 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=14.9
Q ss_pred eEEEEcCCCCCHHHHHHHHh-cC
Q 027292 19 KVVLIGDSAVGKSQILARFA-RN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~-~~ 40 (225)
-|+|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 53
No 323
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.29 E-value=0.0021 Score=48.60 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-++|+|++|+|||||++.+++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.27 E-value=0.0026 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 325
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.26 E-value=0.0027 Score=46.36 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 326
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.25 E-value=0.0023 Score=51.27 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=22.8
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 14 IDYVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 14 ~~~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
...-.-|+|+|++|||||||++.|.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 344567999999999999999998774
No 327
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.23 E-value=0.0027 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 328
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.22 E-value=0.0032 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 329
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.22 E-value=0.003 Score=45.31 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 330
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.21 E-value=0.0086 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 331
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.19 E-value=0.0034 Score=48.31 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 16 YVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..++|+|.|.+||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 332
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.17 E-value=0.0093 Score=50.06 Aligned_cols=63 Identities=27% Similarity=0.369 Sum_probs=38.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc------------------CcCCCC---CCCcceeeeEEEEEEE---CCEEEEEEE
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFAR------------------NEFSLD---SKATIGVEFQTRTLVI---QHKSVKAQI 70 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~------------------~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~l 70 (225)
.+..=|.|+|..++|||+|+|.|+. ..|... ...|.|+-.....+.. ++....+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 4677788999999999999996641 122221 1122232222111111 456788999
Q ss_pred EeCCCch
Q 027292 71 WDTAGQE 77 (225)
Q Consensus 71 ~Dt~G~~ 77 (225)
+||.|..
T Consensus 145 lDTEG~~ 151 (457)
T 4ido_A 145 MDTQGTF 151 (457)
T ss_dssp EEECCBT
T ss_pred EeccCCC
Confidence 9999943
No 333
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.16 E-value=0.0031 Score=45.75 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
+|+|+|.+|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 334
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.16 E-value=0.0027 Score=49.84 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 335
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.16 E-value=0.0037 Score=46.58 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 336
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.15 E-value=0.0033 Score=47.45 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.+.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 337
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.13 E-value=0.0034 Score=47.61 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
+.|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 338
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0065 Score=46.17 Aligned_cols=29 Identities=14% Similarity=-0.055 Sum_probs=23.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCc
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.+.+.+-|++.|.++.|||.|+++++...
T Consensus 25 ~P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 25 YPQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred cCCCceEEEecCcccccHHHHHHHHhccc
Confidence 35566777777999999999999999874
No 339
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.12 E-value=0.0035 Score=45.54 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988764
No 340
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.12 E-value=0.0014 Score=47.73 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.|.|+|++|+|||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 341
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.12 E-value=0.0029 Score=51.63 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-+.|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998853
No 342
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.11 E-value=0.0035 Score=45.54 Aligned_cols=24 Identities=13% Similarity=0.309 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
...|.|+|.+|+|||||+.+|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998763
No 343
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.09 E-value=0.0042 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 344
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.09 E-value=0.0032 Score=48.58 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
++|+|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 345
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.09 E-value=0.002 Score=45.81 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998774
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.08 E-value=0.0035 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 347
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.07 E-value=0.0033 Score=51.23 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-+.|+|+.|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999998753
No 348
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.05 E-value=0.0028 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998774
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.05 E-value=0.0033 Score=47.51 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 350
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.05 E-value=0.0034 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 16 YVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
....|.|+|+.|+|||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999876
No 351
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.04 E-value=0.0034 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-.|+|+|++|||||||++.+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999999875
No 352
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.04 E-value=0.0035 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998774
No 353
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.04 E-value=0.0037 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
...|+|.|.+|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 354
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.03 E-value=0.0036 Score=51.14 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-+.|+|+.|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3689999999999999999874
No 355
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.01 E-value=0.0037 Score=51.10 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-+.|+|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998743
No 356
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.00 E-value=0.0043 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..-.-|+|.|..|+|||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999998764
No 357
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.99 E-value=0.0038 Score=50.96 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.|+|+|++|+|||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999876
No 358
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.99 E-value=0.0024 Score=51.00 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|+.|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999988763
No 359
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.99 E-value=0.0039 Score=51.30 Aligned_cols=23 Identities=43% Similarity=0.533 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-+.|+|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999998753
No 360
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.99 E-value=0.0037 Score=49.82 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
---++++|+.|+||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999875
No 361
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.97 E-value=0.0042 Score=46.83 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.++|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 362
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.97 E-value=0.0039 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-+.|+|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37899999999999999998753
No 363
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.96 E-value=0.0041 Score=51.08 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-+.|+|+.|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3689999999999999999874
No 364
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.96 E-value=0.0041 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-+.|+|+.|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999998753
No 365
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.96 E-value=0.0055 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 366
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.96 E-value=0.0041 Score=48.23 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 367
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.96 E-value=0.0055 Score=44.80 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 368
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.93 E-value=0.0048 Score=45.69 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 369
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.93 E-value=0.0038 Score=50.45 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 370
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.93 E-value=0.0046 Score=48.92 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 16 YVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
....|+|.|++|||||||.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999965
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.92 E-value=0.0064 Score=48.87 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
...+-|.|+|++|||||||++.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457799999999999999998865
No 372
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.92 E-value=0.0038 Score=51.07 Aligned_cols=22 Identities=18% Similarity=0.542 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|+|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999874
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.92 E-value=0.0049 Score=45.19 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 374
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.91 E-value=0.0065 Score=46.00 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-|+|+|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999998865
No 375
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.89 E-value=0.0049 Score=45.29 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 376
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.88 E-value=0.0068 Score=44.36 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=21.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
....|+|.|.+|+||||+++.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998653
No 377
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.88 E-value=0.0045 Score=45.19 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 378
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.85 E-value=0.0047 Score=50.75 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.|+|+|++|+|||||++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999876
No 379
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.85 E-value=0.0047 Score=48.40 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
|+|+|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999874
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.85 E-value=0.0053 Score=45.25 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 381
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.85 E-value=0.0045 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.++|+|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999874
No 382
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.84 E-value=0.0045 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
...|+|+|++|+|||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 383
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.84 E-value=0.0062 Score=45.33 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 16 YVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
....|+|+|.+|+|||||++.|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.83 E-value=0.0056 Score=45.03 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 385
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.83 E-value=0.0063 Score=48.20 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=21.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.....|+|+|++|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998765
No 386
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.82 E-value=0.0061 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 387
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.80 E-value=0.0051 Score=46.38 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999875
No 388
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.79 E-value=0.21 Score=39.66 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 344566999999999999764
No 389
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.78 E-value=0.0041 Score=45.00 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999988764
No 390
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.78 E-value=0.0059 Score=43.94 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 391
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.77 E-value=0.0034 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-+.|+|+.|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998743
No 392
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.75 E-value=0.0052 Score=50.77 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.+.|+|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999873
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.74 E-value=0.0059 Score=44.44 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999865
No 394
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.74 E-value=0.006 Score=45.54 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.73 E-value=0.0021 Score=48.06 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 396
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.72 E-value=0.0039 Score=45.35 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=15.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 397
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.72 E-value=0.0066 Score=46.95 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 027292 18 FKVVLIGDSAVGKSQILARFA 38 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~ 38 (225)
..|.|+|++|||||||++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 398
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.71 E-value=0.0043 Score=48.03 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.....|+|+|.+||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999865
No 399
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.70 E-value=0.0054 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.|+|+|++|||||||++.+++--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999998743
No 400
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.69 E-value=0.006 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.|+|.|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999999764
No 401
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.69 E-value=0.0067 Score=44.95 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..++|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988764
No 402
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.69 E-value=0.0065 Score=45.96 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988763
No 403
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.69 E-value=0.0056 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.|+|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998874
No 404
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.66 E-value=0.006 Score=49.82 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
---|+|+|+.|+|||||++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999999876
No 405
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.65 E-value=0.022 Score=45.70 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..|+|.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999654
No 406
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.65 E-value=0.0079 Score=43.17 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 16 YVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..-.|+|.|.+||||||+.+.|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 407
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.64 E-value=0.018 Score=42.55 Aligned_cols=85 Identities=13% Similarity=-0.025 Sum_probs=55.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCCCCCHH
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHA--DKNIVIILIGNKSDLEEQRAVPTE 143 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~ 143 (225)
+.+.++|+|+.. .......+..+|.+|+++..+... ..+..++..+.... ..+.++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 678999999865 333455666799999999876544 55666666665543 235677899999985421 223
Q ss_pred HHHHHHHHcCCeEE
Q 027292 144 DAKEFAQKEGLFFL 157 (225)
Q Consensus 144 ~~~~~~~~~~~~~~ 157 (225)
+..+..+.++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 45555555665443
No 408
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.62 E-value=0.0084 Score=43.56 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+|+||||+++.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.60 E-value=0.0062 Score=48.14 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-++|+|++|+|||||+..+++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 410
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0058 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.++|+|+.|+|||||++.|++-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998763
No 411
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.59 E-value=0.0082 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 16 YVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.58 E-value=0.0066 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.704 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
---|+|+|..|+|||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999999875
No 413
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.55 E-value=0.0034 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-+.|+|+.|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999998753
No 414
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.52 E-value=0.0076 Score=45.09 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-++|+|++|+|||||+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.52 E-value=0.0073 Score=46.76 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-.|+|+|.+|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 416
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.52 E-value=0.0075 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
++.|+|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998863
No 417
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.50 E-value=0.0079 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-++|+|++|+|||||+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 418
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.48 E-value=0.0097 Score=44.71 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999975
No 419
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.45 E-value=0.0089 Score=41.99 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCc
Q 027292 17 VFKVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
...|++.|++|+|||+|++.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3569999999999999999997643
No 420
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.44 E-value=0.011 Score=46.45 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
...+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999873
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.39 E-value=0.009 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
...|+|.|.+|+||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 422
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.37 E-value=0.011 Score=41.94 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 027292 20 VVLIGDSAVGKSQILARFA 38 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~ 38 (225)
.+|+|+.|+|||+|+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999875
No 423
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.35 E-value=0.012 Score=44.83 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=21.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.-..|+|.|.+|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998764
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.33 E-value=0.0083 Score=48.11 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..-++|+|..|+|||||++.+.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 456789999999999999999865
No 425
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.29 E-value=0.012 Score=45.12 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.+.|.|.|++|+||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 426
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.29 E-value=0.0099 Score=44.70 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 427
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.28 E-value=0.01 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999999764
No 428
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.28 E-value=0.01 Score=45.73 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
...|+|.|++|+|||+|++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999763
No 429
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.27 E-value=0.0095 Score=46.95 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.-.|+|.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999999763
No 430
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.22 E-value=0.01 Score=47.00 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..-+++.|++|+|||+|++.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346777899999999999999764
No 431
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.21 E-value=0.013 Score=46.39 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=20.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.....++|.|++|+|||+|++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999987654
No 432
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.19 E-value=0.014 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 433
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.17 E-value=0.011 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.|+|.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999999864
No 434
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.14 E-value=0.011 Score=49.53 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
++.|+|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998853
No 435
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.12 E-value=0.011 Score=48.52 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-.|+|+|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 436
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.11 E-value=0.018 Score=42.62 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 13 KIDYVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 13 ~~~~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
....-+.|+|.|.+||||||+.+.|...
T Consensus 8 ~~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 8 HHHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999998653
No 437
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.08 E-value=0.013 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.++|+|+.|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998743
No 438
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.04 E-value=0.012 Score=49.85 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999875
No 439
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.03 E-value=0.012 Score=47.01 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.++|.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998763
No 440
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.01 E-value=0.011 Score=44.35 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.+++.|++|+|||+++..++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888865
No 441
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.99 E-value=0.02 Score=44.57 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
....++|.|++|+|||+|++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999774
No 442
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.98 E-value=0.013 Score=46.54 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=47.7
Q ss_pred EEEEEEEeCCCchhhhh--h--hHhhhc--CCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 027292 65 SVKAQIWDTAGQERYRA--V--TSAYYR--GAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQR 138 (225)
Q Consensus 65 ~~~~~l~Dt~G~~~~~~--~--~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (225)
...+.|+||+|...... + ....+. ..+.+++|+|.... ...+..+...+.. .+. .-+|+||.|....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~~-~giVltk~D~~~~- 254 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VPV-NQYIFTKIDETTS- 254 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SCC-CEEEEECTTTCSC-
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CCC-CEEEEeCCCcccc-
Confidence 35688999999654322 1 112222 36778899987742 2333333332221 122 3456699997532
Q ss_pred CCCHHHHHHHHHHcCCeEEEec
Q 027292 139 AVPTEDAKEFAQKEGLFFLETS 160 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~S 160 (225)
...+.......+.++..+.
T Consensus 255 ---~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 ---LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ---CHHHHHHHHTCSCCCSEEC
T ss_pred ---hhHHHHHHHHHCcCEEEEE
Confidence 2355667777888755443
No 443
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.97 E-value=0.019 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.-.++|+|++|+|||+|++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999988764
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.94 E-value=0.013 Score=45.81 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-++|+|++|+|||||+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 445
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.94 E-value=0.011 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=17.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.-+++.|++|+||||++-.++.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4577889999999998876654
No 446
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.91 E-value=0.015 Score=47.57 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 027292 20 VVLIGDSAVGKSQILARFA 38 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~ 38 (225)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5599999999999999986
No 447
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.85 E-value=0.016 Score=45.77 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
...++|.|++|+|||+|++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998763
No 448
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.015 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-|++.|+||+|||+|++++++.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 449
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.85 E-value=0.015 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
-+.|+|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998743
No 450
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.83 E-value=0.015 Score=50.59 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.+.++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999998774
No 451
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.79 E-value=0.015 Score=47.18 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.++|.|++|+|||+|++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998763
No 452
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.78 E-value=0.017 Score=46.12 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=47.6
Q ss_pred EEEEEEeCCCchhhhhh-------hHhhh-----cCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027292 66 VKAQIWDTAGQERYRAV-------TSAYY-----RGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSD 133 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~-------~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 133 (225)
+.+.++||||....... ....+ ...|.+++|+|.... .+.+.. ...+.+.. +. .-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~i-~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--NV-TGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--CC-CEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--CC-CEEEEeCCC
Confidence 45889999995321111 01111 247889999998732 122221 22233221 22 345679999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEecc
Q 027292 134 LEEQRAVPTEDAKEFAQKEGLFFLETSA 161 (225)
Q Consensus 134 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (225)
.... ...+..+....+.|+..+..
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence 6531 22366777788888766644
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.021 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.+.|+|+.|+|||||++.|.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 48999999999999999998743
No 454
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.016 Score=48.45 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.-.|++.|+||+|||.|++++++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 455
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.76 E-value=0.017 Score=43.86 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-++|+|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887754
No 456
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.75 E-value=0.02 Score=43.65 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=20.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 15 DYVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..-++..|+|.+||||||+...|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998854
No 457
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.74 E-value=0.017 Score=50.24 Aligned_cols=22 Identities=45% Similarity=0.610 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998774
No 458
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.74 E-value=0.016 Score=43.11 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292 18 FKVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999997653
No 459
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.71 E-value=0.017 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.|+|.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999874
No 460
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.70 E-value=0.018 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
..-|+|+|.+||||||+.+.|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356889999999999999998753
No 461
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.69 E-value=0.17 Score=38.30 Aligned_cols=87 Identities=16% Similarity=0.042 Sum_probs=57.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027292 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHIPRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDA 145 (225)
Q Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 145 (225)
+.+.++|+|+... ......+..+|.+|+++..+ ..+...+..+++.+.........+.+|+|+.+... ....
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~--- 190 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS--- 190 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH---
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH---
Confidence 5689999988542 23445677899999998875 55666667777777655433455788899998653 2233
Q ss_pred HHHHHHcCCeEEEec
Q 027292 146 KEFAQKEGLFFLETS 160 (225)
Q Consensus 146 ~~~~~~~~~~~~~~S 160 (225)
+.+.+.++.+++.+-
T Consensus 191 ~~~~~~~~~~v~~~i 205 (245)
T 3ea0_A 191 DEIEKVIGRPISKRI 205 (245)
T ss_dssp HHHHHHHTSCEEEEE
T ss_pred HHHHHHhCCCeEEEC
Confidence 334445677766553
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.65 E-value=0.021 Score=43.52 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc
Q 027292 16 YVFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
....|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 463
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.64 E-value=0.019 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
...|+|.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999764
No 464
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.019 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.--|++.|+||+|||+|++++++.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999874
No 465
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.61 E-value=0.027 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.+.|+|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998743
No 466
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.60 E-value=0.022 Score=42.12 Aligned_cols=21 Identities=43% Similarity=0.476 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.|.|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 467
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.58 E-value=0.019 Score=49.50 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.+.|+|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
No 468
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.57 E-value=0.023 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|+|++|+|||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 469
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.57 E-value=0.019 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998774
No 470
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.56 E-value=0.022 Score=45.48 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.-.++|.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988763
No 471
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.54 E-value=0.022 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.+.|+|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 472
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.51 E-value=0.028 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 027292 17 VFKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..+|+|+|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999987754
No 473
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.50 E-value=0.022 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc
Q 027292 19 KVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
.++|+|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
No 474
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.021 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
--|++.|+||+|||.|++++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 46999999999999999999874
No 475
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.48 E-value=0.022 Score=45.93 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.|+|+|++|+|||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 476
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.44 E-value=0.023 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
..|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999998865
No 477
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.42 E-value=0.025 Score=41.39 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027292 20 VVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~ 40 (225)
|+|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 478
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.41 E-value=0.01 Score=46.06 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.++|.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999999976
No 479
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.39 E-value=0.025 Score=45.23 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999999764
No 480
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.39 E-value=0.029 Score=46.44 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHH
Q 027292 15 DYVFKVVLIGDSAVGKSQILARF 37 (225)
Q Consensus 15 ~~~~~I~vlG~~g~GKSsLi~~l 37 (225)
...+|++++|...|||||++..+
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 35899999999999999999875
No 481
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.36 E-value=0.027 Score=42.00 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027292 19 KVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~ 39 (225)
-.+|+|+.|+|||||+.++..
T Consensus 25 ~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 457889999999999998753
No 482
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.35 E-value=0.016 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.+.++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998774
No 483
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.35 E-value=0.024 Score=46.04 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|.|++|+|||+|++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 484
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.34 E-value=0.022 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-+.|+|++|+|||||+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 485
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.32 E-value=0.024 Score=45.63 Aligned_cols=22 Identities=14% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.++|.|++|+|||+|++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 486
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.29 E-value=0.017 Score=50.40 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.+.++|+.|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988764
No 487
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.27 E-value=0.019 Score=44.53 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 16 YVFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 16 ~~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
....|+|.|..|+||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988653
No 488
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.27 E-value=0.021 Score=46.36 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998763
No 489
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.27 E-value=0.015 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.+.++|+.|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999987663
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.025 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 027292 20 VVLIGDSAVGKSQILARFARNEF 42 (225)
Q Consensus 20 I~vlG~~g~GKSsLi~~l~~~~~ 42 (225)
++|+|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 78999999999999999988543
No 491
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.23 E-value=0.025 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.|+|.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999764
No 492
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.20 E-value=0.027 Score=43.54 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCc
Q 027292 18 FKVVLIGDSAVGKSQILARFARNE 41 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~~ 41 (225)
..|+|.|++|+|||+|++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 579999999999999999997653
No 493
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.18 E-value=0.02 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027292 19 KVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 19 ~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.+.++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988763
No 494
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.027 Score=46.96 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.--|++.|+||+|||.|++++++.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 346999999999999999999874
No 495
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.16 E-value=0.027 Score=46.09 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
...|+|.|++|+|||+|++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 496
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.16 E-value=0.024 Score=48.02 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-+++|+|++|+|||+|++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988653
No 497
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.14 E-value=0.038 Score=44.05 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 027292 18 FKVVLIGDSAVGKSQILARFAR 39 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~ 39 (225)
.-|+|+|++|||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4588999999999999999975
No 498
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.13 E-value=0.026 Score=47.34 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 027292 18 FKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 18 ~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
-.++|.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 499
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.10 E-value=0.028 Score=45.75 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
...|+|.|++|+|||++++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998764
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.09 E-value=0.03 Score=45.52 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 027292 17 VFKVVLIGDSAVGKSQILARFARN 40 (225)
Q Consensus 17 ~~~I~vlG~~g~GKSsLi~~l~~~ 40 (225)
.-.|+|.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
Done!