BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027293
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80813|YC20L_ARATH Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2
Length = 197
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 88/140 (62%), Gaps = 7/140 (5%)
Query: 69 KKMSWAI--GSSV---DDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDFPTK 123
+K+++A+ GSS+ G + + + G TRL R+ A ++ +I RK+FP K
Sbjct: 55 RKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGKINSARKNFPMK 114
Query: 124 LLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR--ASLRLLSKIRNLI 181
+ L+GFY A A AT++GQTGDWD+L A + V +EGIG LMY+ +S K+++ +
Sbjct: 115 IFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFV 174
Query: 182 TMFNYWKAGLTLGLFLDSFK 201
N+WKAG+ LGLF+D+FK
Sbjct: 175 VFMNFWKAGVCLGLFVDAFK 194
>sp|Q9MUL5|YCF20_MESVI Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3
SV=1
Length = 116
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 8/113 (7%)
Query: 95 RTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAAL 154
TRL + ++IQ +FP K+L L+GF+ AT ATV GQTGDWD+L A +
Sbjct: 3 NTRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVAGI 62
Query: 155 AVVVVEGIGALMYRASLRLLSKIRNLITMF------NYWKAGLTLGLFLDSFK 201
V ++E +G MY S + +SK + F NY K GL GLF+D+FK
Sbjct: 63 LVAMIEILGNKMY--SKKYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFK 113
>sp|Q1XDS2|YCF20_PORYE Uncharacterized protein ycf20 OS=Porphyra yezoensis GN=ycf20 PE=3
SV=1
Length = 108
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 95 RTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAAL 154
+TRL + ++ + T L+ L+GF+ +T +T+ GQTGDW I++A+L
Sbjct: 3 KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62
Query: 155 AVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFK 201
V E ++Y + +L KI +FN +K G+T GLF+D+FK
Sbjct: 63 IVAATELTSKIVYSSHKQLNIKIN----LFNNFKIGITYGLFVDAFK 105
>sp|P51214|YCF20_PORPU Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3
SV=1
Length = 108
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 95 RTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAAL 154
RT+L F + +R+ + L+ L+GF+ +T +T+ GQTGDW I++A+L
Sbjct: 3 RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62
Query: 155 AVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFK 201
V +E + ++Y K I + N K G+T GLF+D+FK
Sbjct: 63 IVAAIELVSKIVYSNK----KKYGVRINLLNNLKIGITYGLFVDAFK 105
>sp|P72983|YC20L_SYNY3 Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll1509 PE=3 SV=1
Length = 109
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 95 RTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAAL 154
RTRL +++ ++ + + LL FL GF+ TA AT GQ WD++ AA
Sbjct: 3 RTRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAF 62
Query: 155 AVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFK 201
++ E + YR +++ ++ +F K G++ LFL++FK
Sbjct: 63 ILLFCELVNRWFYRRGVKMGDLQAEVLNIF---KMGVSYSLFLEAFK 106
>sp|Q9MVP1|YCF20_CYACA Uncharacterized protein ycf20 OS=Cyanidium caldarium GN=ycf20 PE=3
SV=1
Length = 101
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 106 QTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGAL 165
QTR+ +I + T FL GF+ ++A +T++ QT +W IL+AA+ + +VE L
Sbjct: 5 QTRVIKQIN--KTILATCSFIFLFGFFLSSATSTILIQTNEWSILTAAILISIVELFNYL 62
Query: 166 MYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFK 201
++ N N K GL GLF+D+FK
Sbjct: 63 KHKFQFNDRKSGYNCFFFINLAKLGLLYGLFIDAFK 98
>sp|P48409|YCF20_GALSU Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20
PE=3 SV=1
Length = 83
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 128 LVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYW 187
L+G + + T+ QTGDW + + + + E I + Y ++ K N+I FN +
Sbjct: 9 LLGIFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQFIKKTHK--NIINCFNGF 66
Query: 188 KAGLTLGLFLDSFK 201
K GL GL+LD+FK
Sbjct: 67 KIGLIYGLYLDAFK 80
>sp|P34813|YCF20_AGLNE Uncharacterized protein ycf20 OS=Aglaothamnion neglectum GN=ycf20
PE=3 SV=1
Length = 100
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 109 IGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR 168
IG + + +L+ +G++ T ++ +TGDW +++A L V + E + AL+Y
Sbjct: 8 IGQYLYYHINNLSLQLISLFLGYFFCTIICSIPKETGDWGLITALLIVGINETMSALIYS 67
Query: 169 ASLRLLSKIRN--LITMFNYWKAGLTLGLFLDSFK 201
K N ++ N K G+ GLF+DSFK
Sbjct: 68 Y-----KKYENNIIVKTINGIKIGIIYGLFVDSFK 97
>sp|O78445|YCF20_GUITH Uncharacterized protein ycf20 OS=Guillardia theta GN=ycf20 PE=3
SV=1
Length = 64
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 120 FPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR 168
F LL L GF+ +T +T++ QTGDW IL+A++ V +E I Y+
Sbjct: 4 FFYNLLTILFGFFLSTLLSTILSQTGDWSILAASILVATIELINKNKYK 52
>sp|A4QQE0|CLP1_MAGO7 Protein CLP1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=CLP1 PE=3 SV=2
Length = 455
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 94 GRTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATV--IGQTGDW 147
GRT L+R + A+ TR GA+ + D P + L L G A F TV + G W
Sbjct: 139 GRTSLVRTLAAWATRTGAQPMVVDAD-PGEGLLTLPGTLSAAVFGTVMDVASEGGW 193
>sp|A2RAW3|CLP1_ASPNC Protein clp1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=clp1 PE=3 SV=1
Length = 477
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 94 GRTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDW 147
G+T L +++ A+ T++G + + D PT+ + + G ATAF T+I W
Sbjct: 129 GKTSLSKILTAYATKVGRQPLVVNLD-PTEGMLSVPGTLTATAFRTMIDVEEGW 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,176,916
Number of Sequences: 539616
Number of extensions: 3038063
Number of successful extensions: 8801
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8784
Number of HSP's gapped (non-prelim): 16
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)