Your job contains 1 sequence.
>027294
MEDGNGYDSSMEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAV
ALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQ
IVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQ
EKEKLLKKYSIEEKQQHNRHLCWTTTKQSPSLQPPWLNNHPHNYP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027294
(225 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2080650 - symbol:NRPE5 species:3702 "Arabidops... 515 2.0e-49 1
TAIR|locus:2040257 - symbol:RPB5D ""RNA polymerase II fif... 513 3.2e-49 1
TAIR|locus:2096971 - symbol:RPB5E ""RNA polymerase II fif... 369 5.8e-34 1
WB|WBGene00019246 - symbol:rpb-5 species:6239 "Caenorhabd... 226 8.3e-19 1
POMBASE|SPAC23C4.15 - symbol:rpb5 "DNA-directed RNA polym... 220 3.6e-18 1
TAIR|locus:2087842 - symbol:NRPB5 species:3702 "Arabidops... 215 1.2e-17 1
UNIPROTKB|Q5R587 - symbol:POLR2E "DNA-directed RNA polyme... 209 5.3e-17 1
MGI|MGI:1913670 - symbol:Polr2e "polymerase (RNA) II (DNA... 207 8.6e-17 1
RGD|1589817 - symbol:Polr2e "polymerase (RNA) II (DNA dir... 207 8.6e-17 1
SGD|S000000358 - symbol:RPB5 "RNA polymerase subunit ABC2... 207 8.6e-17 1
UNIPROTKB|F2Z4J4 - symbol:POLR2E "DNA-directed RNA polyme... 206 1.1e-16 1
UNIPROTKB|E2R2E8 - symbol:POLR2E "Uncharacterized protein... 206 1.1e-16 1
UNIPROTKB|F6X571 - symbol:POLR2E "Uncharacterized protein... 206 1.1e-16 1
UNIPROTKB|I3LSI7 - symbol:POLR2E "Uncharacterized protein... 206 1.1e-16 1
UNIPROTKB|F1NHV9 - symbol:POLR2E "Uncharacterized protein... 204 1.8e-16 1
ZFIN|ZDB-GENE-040801-83 - symbol:polr2eb "polymerase (RNA... 202 2.9e-16 1
UNIPROTKB|P19388 - symbol:POLR2E "DNA-directed RNA polyme... 201 3.7e-16 1
FB|FBgn0033571 - symbol:Rpb5 "Rpb5" species:7227 "Drosoph... 198 7.7e-16 1
UNIPROTKB|Q2T9T3 - symbol:POLR2E "DNA-directed RNA polyme... 197 9.8e-16 1
GENEDB_PFALCIPARUM|PF13_0341 - symbol:PF13_0341 "DNA-dire... 194 2.0e-15 1
UNIPROTKB|Q8ID59 - symbol:PF13_0341 "DNA-directed RNA pol... 194 2.0e-15 1
TAIR|locus:2174388 - symbol:RPB5C ""RNA polymerase II fif... 184 2.3e-14 1
ASPGD|ASPL0000062840 - symbol:AN0752 species:162425 "Emer... 131 2.3e-12 2
DICTYBASE|DDB_G0291636 - symbol:rpb5 "RNA polymerase II c... 165 2.4e-12 1
TAIR|locus:2089338 - symbol:AT3G16680 species:3702 "Arabi... 112 1.5e-06 1
>TAIR|locus:2080650 [details] [associations]
symbol:NRPE5 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IPI] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
EMBL:CP002686 GO:GO:0003677 GO:GO:0006351 EMBL:AL138655
GO:GO:0003899 GO:GO:0000419 KO:K03013 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434 ProtClustDB:PLN03111
EMBL:BT005410 EMBL:AK118958 IPI:IPI00518077 PIR:T47768
RefSeq:NP_191267.1 UniGene:At.28133 ProteinModelPortal:Q9M1J2
SMR:Q9M1J2 DIP:DIP-48680N STRING:Q9M1J2 PRIDE:Q9M1J2
EnsemblPlants:AT3G57080.1 GeneID:824875 KEGG:ath:AT3G57080
TAIR:At3g57080 InParanoid:Q9M1J2 OMA:TVVKVIY PhylomeDB:Q9M1J2
ArrayExpress:Q9M1J2 Genevestigator:Q9M1J2 Uniprot:Q9M1J2
Length = 222
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 99/169 (58%), Positives = 129/169 (76%)
Query: 27 CLSGFVDNGXXXXXXXXXXXXTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR 86
CLS +VD L+ML+DRGY V+ +INLS+ DFR +YG+ PDVDRLR
Sbjct: 13 CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72
Query: 87 ISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
IS H+SD +K++ +VF G +VKVN IRS+++ I++++T+TGLIL+LQN +T+QA KA+
Sbjct: 73 ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LF FKVE+FQITDLLVNITKH LKP+HQVL D+EK LLKK+SIEEKQ
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQ 181
>TAIR|locus:2040257 [details] [associations]
symbol:RPB5D ""RNA polymerase II fifth largest subunit,
D"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351 EMBL:AC005662
GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
ProtClustDB:PLN03111 EMBL:AY078926 IPI:IPI00521699 PIR:E84840
RefSeq:NP_181665.1 UniGene:At.42846 ProteinModelPortal:Q9ZVB9
SMR:Q9ZVB9 STRING:Q9ZVB9 PaxDb:Q9ZVB9 PRIDE:Q9ZVB9
EnsemblPlants:AT2G41340.1 GeneID:818732 KEGG:ath:AT2G41340
TAIR:At2g41340 InParanoid:Q9ZVB9 OMA:YLARRTT PhylomeDB:Q9ZVB9
ArrayExpress:Q9ZVB9 Genevestigator:Q9ZVB9 Uniprot:Q9ZVB9
Length = 218
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 98/148 (66%), Positives = 124/148 (83%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPG 107
T +EML+DRGY V+ +INLS+Q FRA+YG+ PDVD LRIS H+ D SK+I VVFCG G
Sbjct: 30 TTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSKKISVVFCGTG 89
Query: 108 IVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITK 167
IVKVN +R I + +++R+ +TGLIL+LQ+ IT+QA KAV LF FKVE+F+ITDLLVN++K
Sbjct: 90 IVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITDLLVNVSK 149
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
HVL+PKHQVL D+EKE LLKK+SIEEKQ
Sbjct: 150 HVLRPKHQVLNDKEKESLLKKFSIEEKQ 177
>TAIR|locus:2096971 [details] [associations]
symbol:RPB5E ""RNA polymerase II fifth largest subunit,
E"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351 EMBL:AL138656
GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
ProtClustDB:PLN03111 IPI:IPI00548152 PIR:T47608 RefSeq:NP_191013.1
UniGene:At.1460 UniGene:At.71274 ProteinModelPortal:Q9M1H8
SMR:Q9M1H8 STRING:Q9M1H8 EnsemblPlants:AT3G54490.1 GeneID:824614
KEGG:ath:AT3G54490 TAIR:At3g54490 InParanoid:Q9M1H8 OMA:SKMNHFA
PhylomeDB:Q9M1H8 Genevestigator:Q9M1H8 Uniprot:Q9M1H8
Length = 233
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 73/170 (42%), Positives = 113/170 (66%)
Query: 26 SCLSGFVDNGXXXXXXXXXXXXTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL 85
+C+S D G T EML+DRGY V +E++L++ +FR+++G+ P+++RL
Sbjct: 23 NCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERL 82
Query: 86 RISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA 145
RI + +SDP K+ILVVF G + V +R++ QI N L +IL+LQ+++ A KA
Sbjct: 83 RICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKA 142
Query: 146 VGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+ F F VE F I DLLVNITKH+ +PK ++L +EKE+LL+K+++E+KQ
Sbjct: 143 LTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQ 192
>WB|WBGene00019246 [details] [associations]
symbol:rpb-5 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006351
GO:GO:0040035 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 EMBL:FO081567 RefSeq:NP_491961.1
ProteinModelPortal:Q9N5K2 SMR:Q9N5K2 IntAct:Q9N5K2 STRING:Q9N5K2
PaxDb:Q9N5K2 EnsemblMetazoa:H27M09.2 GeneID:172412
KEGG:cel:CELE_H27M09.2 CTD:172412 WormBase:H27M09.2
GeneTree:ENSGT00390000013841 InParanoid:Q9N5K2 OMA:DQPLETF
NextBio:875409 Uniprot:Q9N5K2
Length = 211
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 49/155 (31%), Positives = 92/155 (59%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
TVL+M+ DRGY VA E++ ++ F+ YG P + L I ++H DP+ ++ V
Sbjct: 17 TVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVF 76
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITD 160
F + + I++I Q+ ++ ++ I+++Q +T A +++G ++ +E F +
Sbjct: 77 FPEDAKIGIKTIKAICQQMQEQN-ISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAE 135
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
L+VNIT+H L P+H V+T +EK +LL +Y +++ Q
Sbjct: 136 LMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQ 170
>POMBASE|SPAC23C4.15 [details] [associations]
symbol:rpb5 "DNA-directed RNA polymerase I, II and III
subunit Rpb5" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IGI]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IGI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=IGI] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IGI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IGI]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 PomBase:SPAC23C4.15 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006366 GO:GO:0006383
GO:GO:0006360 GO:GO:0005736 GO:GO:0005666 GO:GO:0003899
GO:GO:0005665 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 OMA:DEAETYK EMBL:AF027820
EMBL:D43785 PIR:T38270 RefSeq:NP_593187.1 PDB:3H0G PDBsum:3H0G
ProteinModelPortal:Q09191 SMR:Q09191 IntAct:Q09191
MINT:MINT-1214324 STRING:Q09191 EnsemblFungi:SPAC23C4.15.1
GeneID:2541910 KEGG:spo:SPAC23C4.15 OrthoDB:EOG40CMS4
EvolutionaryTrace:Q09191 NextBio:20802997 Uniprot:Q09191
Length = 210
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 53/154 (34%), Positives = 89/154 (57%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISI--SHQSDPSK-RILVVF 103
T +++ DRGY V+ +E++L++ F+A++ G ++DR +S +D +K I + F
Sbjct: 17 TAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEF 76
Query: 104 CGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDL 161
V + +R+ + + + + TG ILI N +T A K + QF +E FQ +DL
Sbjct: 77 AKEPSVGIKEMRTFVHTLGDHNHKTG-ILIYANSMTPSAAKIIATVTGQFTIETFQESDL 135
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+VNIT H L PKH +L+ EK++LL +Y + E Q
Sbjct: 136 IVNITHHELVPKHILLSPDEKKELLDRYKLRETQ 169
>TAIR|locus:2087842 [details] [associations]
symbol:NRPB5 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IPI] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IPI] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] [GO:0051604 "protein
maturation" evidence=RCA] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351 EMBL:AB022215
GO:GO:0003899 GO:GO:0000418 GO:GO:0005665 eggNOG:COG2012
HOGENOM:HOG000205213 KO:K03013 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
OMA:DEAETYK UniGene:At.28063 HSSP:O27122 EMBL:AF019248
EMBL:AF370551 EMBL:AF412101 EMBL:AY086150 EMBL:BT002130
IPI:IPI00519907 PIR:T51950 RefSeq:NP_188871.1 UniGene:At.6260
ProteinModelPortal:O81098 SMR:O81098 DIP:DIP-48677N IntAct:O81098
STRING:O81098 PaxDb:O81098 PRIDE:O81098 EnsemblPlants:AT3G22320.1
GeneID:821801 KEGG:ath:AT3G22320 TAIR:At3g22320 InParanoid:O81098
PhylomeDB:O81098 ProtClustDB:PLN03111 Genevestigator:O81098
Uniprot:O81098
Length = 205
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 47/150 (31%), Positives = 91/150 (60%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPG 107
T+++ML+DRGY +A SE+ ++ Q F +G + + L + ++D S ++ + F
Sbjct: 16 TLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSDQLYIFFPDEA 75
Query: 108 IVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVNI 165
V V ++ +++ + + ++++ QN +T A + +F +E+FQ ++LVNI
Sbjct: 76 KVGVKTMKMYTNRMKSENVFRAILVVQQN-LTPFARTCISEISSKFHLEVFQEAEMLVNI 134
Query: 166 TKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+HVL P+HQVLT +EK+ LL++Y+++E Q
Sbjct: 135 KEHVLVPEHQVLTTEEKKTLLERYTVKETQ 164
>UNIPROTKB|Q5R587 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9601 "Pongo abelii" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0004672 "protein kinase
activity" evidence=ISS] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0003677
GO:GO:0006468 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
HOVERGEN:HBG057019 KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 EMBL:CR860977
RefSeq:NP_001126823.1 UniGene:Pab.18581 ProteinModelPortal:Q5R587
GeneID:100173829 KEGG:pon:100173829 InParanoid:Q5R587
Uniprot:Q5R587
Length = 210
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 46/155 (29%), Positives = 89/155 (57%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V E++ ++++FRA +G P R L + ++H DP+ ++ V
Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 75
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F V + I+ + Q + + +T ++++Q +T A ++ V + ++ +E F +
Sbjct: 76 FPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQE 134
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 135 LLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 169
>MGI|MGI:1913670 [details] [associations]
symbol:Polr2e "polymerase (RNA) II (DNA directed)
polypeptide E" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 MGI:MGI:1913670 GO:GO:0003677
GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:BC045521
IPI:IPI00337955 RefSeq:NP_079830.2 UniGene:Mm.18579
ProteinModelPortal:Q80UW8 SMR:Q80UW8 IntAct:Q80UW8 STRING:Q80UW8
PhosphoSite:Q80UW8 PaxDb:Q80UW8 PRIDE:Q80UW8 DNASU:66420
Ensembl:ENSMUST00000004786 GeneID:66420 KEGG:mmu:66420
InParanoid:Q80UW8 NextBio:321639 Bgee:Q80UW8 CleanEx:MM_POLR2E
Genevestigator:Q80UW8 GermOnline:ENSMUSG00000004667 Uniprot:Q80UW8
Length = 210
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 45/155 (29%), Positives = 89/155 (57%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V E++ ++++F+A +G P R L + ++H DP+ ++ V
Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 75
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F V + I+ + Q + + +T ++++Q +T A ++ V + ++ +E F +
Sbjct: 76 FPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQE 134
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 135 LLINITEHELVPEHVVMTKEEVTELLARYKLRESQ 169
>RGD|1589817 [details] [associations]
symbol:Polr2e "polymerase (RNA) II (DNA directed) polypeptide E"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;ISS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0006468 "protein phosphorylation"
evidence=ISO] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 RGD:1589817 GO:GO:0003677
GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 EMBL:BC158787 IPI:IPI00765968
RefSeq:NP_001103084.1 UniGene:Rn.65038 ProteinModelPortal:B0BNE2
SMR:B0BNE2 STRING:B0BNE2 PRIDE:B0BNE2 Ensembl:ENSRNOT00000018169
GeneID:690966 KEGG:rno:690966 UCSC:RGD:1589817 NextBio:742073
ArrayExpress:B0BNE2 Genevestigator:B0BNE2 Uniprot:B0BNE2
Length = 210
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 45/155 (29%), Positives = 89/155 (57%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V E++ ++++F+A +G P R L + ++H DP+ ++ V
Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 75
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F V + I+ + Q + + +T ++++Q +T A ++ V + ++ +E F +
Sbjct: 76 FPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQE 134
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 135 LLINITEHELVPEHVVMTKEEVTELLARYKLRESQ 169
>SGD|S000000358 [details] [associations]
symbol:RPB5 "RNA polymerase subunit ABC27" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI;IMP]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=IMP] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IDA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0001054 "RNA polymerase I activity"
evidence=IC] [GO:0001055 "RNA polymerase II activity" evidence=IDA]
[GO:0001056 "RNA polymerase III activity" evidence=IDA] [GO:0042797
"tRNA transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 SGD:S000000358 GO:GO:0003677
EMBL:BK006936 GO:GO:0006366 GO:GO:0006360 EMBL:X71329 EMBL:S59774
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 Reactome:REACT_83470
GO:GO:0005665 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 GeneTree:ENSGT00390000013841
OMA:DEAETYK OrthoDB:EOG40CMS4 EMBL:X53287 EMBL:Z36023 PIR:A34588
RefSeq:NP_009712.1 PDB:1DZF PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1DZF PDBsum:1I3Q
PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9
PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO
PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH
PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77
PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J
PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ
PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z
PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ
PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL
PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V
PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY
PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A
PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1
PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16
PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R
PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D
PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J
PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR
PDBsum:4BBS ProteinModelPortal:P20434 SMR:P20434 DIP:DIP-71N
IntAct:P20434 MINT:MINT-530046 STRING:P20434 PaxDb:P20434
PeptideAtlas:P20434 EnsemblFungi:YBR154C GeneID:852451
KEGG:sce:YBR154C CYGD:YBR154c Reactome:REACT_87991
EvolutionaryTrace:P20434 NextBio:971369 Genevestigator:P20434
GermOnline:YBR154C GO:GO:0042797 Uniprot:P20434
Length = 215
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 55/159 (34%), Positives = 85/159 (53%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL------- 100
TV EM+KDRGY + E+ L ++DF+A Y + ++ +S Q++P++ +
Sbjct: 18 TVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKM-MSFQANPTEESISKFPDMG 76
Query: 101 ---VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQFKVEMF 156
V FC V V +++ + I ++ TG I + QN IT A K V + +E F
Sbjct: 77 SLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIPPATIETF 135
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
L+VNIT H L PKH L+ EK +LLK+Y ++E Q
Sbjct: 136 NEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQ 174
>UNIPROTKB|F2Z4J4 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9913 "Bos taurus" [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 IPI:IPI00702043 UniGene:Bt.4678 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:DAAA02020247
ProteinModelPortal:F2Z4J4 PRIDE:F2Z4J4 Ensembl:ENSBTAT00000027684
Uniprot:F2Z4J4
Length = 210
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 45/155 (29%), Positives = 89/155 (57%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V E++ ++++F+A +G P R L + ++H DP+ ++ V
Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 75
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F V + I+ + Q + + +T ++++Q +T A ++ V + ++ +E F +
Sbjct: 76 FPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQE 134
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 135 LLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 169
>UNIPROTKB|E2R2E8 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
Ensembl:ENSCAFT00000031075 Uniprot:E2R2E8
Length = 212
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 45/155 (29%), Positives = 89/155 (57%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V E++ ++++F+A +G P R L + ++H DP+ ++ V
Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 75
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F V + I+ + Q + + +T ++++Q +T A ++ V + ++ +E F +
Sbjct: 76 FPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQE 134
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 135 LLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 169
>UNIPROTKB|F6X571 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK Ensembl:ENSCAFT00000031075
EMBL:AAEX03012666 Uniprot:F6X571
Length = 210
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 45/155 (29%), Positives = 89/155 (57%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V E++ ++++F+A +G P R L + ++H DP+ ++ V
Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 75
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F V + I+ + Q + + +T ++++Q +T A ++ V + ++ +E F +
Sbjct: 76 FPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQE 134
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 135 LLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 169
>UNIPROTKB|I3LSI7 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 KO:K03013 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:FP475994
RefSeq:XP_003354010.1 RefSeq:XP_003354011.1
ProteinModelPortal:I3LSI7 PRIDE:I3LSI7 Ensembl:ENSSSCT00000023998
GeneID:100623333 KEGG:ssc:100623333 Uniprot:I3LSI7
Length = 210
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 45/155 (29%), Positives = 89/155 (57%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V E++ ++++F+A +G P R L + ++H DP+ ++ V
Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 75
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F V + I+ + Q + + +T ++++Q +T A ++ V + ++ +E F +
Sbjct: 76 FPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQE 134
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 135 LLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 169
>UNIPROTKB|F1NHV9 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:AADN02066638
IPI:IPI00604284 Ensembl:ENSGALT00000004080 Uniprot:F1NHV9
Length = 215
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 45/155 (29%), Positives = 89/155 (57%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V E++ ++++F+A +G P R L + ++H DP+ ++ V
Sbjct: 21 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 80
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F V + I+ + Q + + +T ++++Q +T A ++ V + ++ +E F +
Sbjct: 81 FPEEPKVGIKTIK-MYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQE 139
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 140 LLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 174
>ZFIN|ZDB-GENE-040801-83 [details] [associations]
symbol:polr2eb "polymerase (RNA) II (DNA directed)
polypeptide E, b" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 ZFIN:ZDB-GENE-040801-83 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
HOVERGEN:HBG057019 KO:K03013 OrthoDB:EOG479F81 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:CU695074
EMBL:BC077151 IPI:IPI00497952 RefSeq:NP_001003564.1
UniGene:Dr.82162 STRING:Q6DEG5 Ensembl:ENSDART00000035670
GeneID:445170 KEGG:dre:445170 CTD:445170 InParanoid:Q6DEG5
NextBio:20831932 Uniprot:Q6DEG5
Length = 210
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 46/155 (29%), Positives = 89/155 (57%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V E++ ++ +FR+ +G P R L + ++H DP+ ++ V
Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVAHNDDPTDQMFVF 75
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F V + I+ + Q + + +T I+++Q +T A ++ V + ++ +E F +
Sbjct: 76 FPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQE 134
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LL+NIT+H L P+H V+T +E +LL +Y ++E Q
Sbjct: 135 LLINITEHELVPEHIVMTKEEVTELLARYKLKESQ 169
>UNIPROTKB|P19388 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA;TAS] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
Reactome:REACT_116125 GO:GO:0019048 GO:GO:0016032 GO:GO:0003677
Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471139 GO:GO:0006368
GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006370
GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892 GO:GO:0003899
EMBL:AC004151 GO:GO:0006386 GO:GO:0006385 GO:GO:0005665 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 EMBL:J04965
EMBL:S42643 EMBL:D38251 EMBL:AK312625 EMBL:BC004441 EMBL:BC034144
IPI:IPI00291093 PIR:S52002 RefSeq:NP_002686.2 UniGene:Hs.24301
ProteinModelPortal:P19388 SMR:P19388 DIP:DIP-56N IntAct:P19388
MINT:MINT-193645 STRING:P19388 PhosphoSite:P19388 DMDM:116242767
REPRODUCTION-2DPAGE:IPI00291093 SWISS-2DPAGE:P19388 PaxDb:P19388
PeptideAtlas:P19388 PRIDE:P19388 DNASU:5434 Ensembl:ENST00000215587
GeneID:5434 KEGG:hsa:5434 UCSC:uc002lre.4 GeneCards:GC19M001086
HGNC:HGNC:9192 MIM:180664 neXtProt:NX_P19388 PharmGKB:PA33512
InParanoid:P19388 OMA:DEAETYK PhylomeDB:P19388 GenomeRNAi:5434
NextBio:21025 ArrayExpress:P19388 Bgee:P19388 CleanEx:HS_POLR2E
Genevestigator:P19388 GermOnline:ENSG00000099817 Uniprot:P19388
Length = 210
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 45/155 (29%), Positives = 88/155 (56%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V E++ ++++F+A G P R L + ++H DP+ ++ V
Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 75
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F V + I+ + Q + + +T ++++Q +T A ++ V + ++ +E F +
Sbjct: 76 FPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQE 134
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 135 LLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 169
>FB|FBgn0033571 [details] [associations]
symbol:Rpb5 "Rpb5" species:7227 "Drosophila melanogaster"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 EMBL:AE013599 GO:GO:0007095 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 eggNOG:COG2012 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 GeneTree:ENSGT00390000013841
HSSP:P20434 OMA:DEAETYK EMBL:AY071329 RefSeq:NP_610630.1
UniGene:Dm.5984 SMR:Q7JZF5 STRING:Q7JZF5 EnsemblMetazoa:FBtr0088237
EnsemblMetazoa:FBtr0331935 GeneID:36160 KEGG:dme:Dmel_CG11979
UCSC:CG11979-RA CTD:36160 FlyBase:FBgn0033571 InParanoid:Q7JZF5
OrthoDB:EOG4MCVGC GenomeRNAi:36160 NextBio:797126 Uniprot:Q7JZF5
Length = 210
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 42/153 (27%), Positives = 91/153 (59%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V E++ +++ F+ ++G P R L + ++H DP+ ++ V
Sbjct: 16 TIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVF 75
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F + + I++ +++ + + I+++Q +T A ++ V + ++ +E F ++
Sbjct: 76 FPEEPKIGIKTIKTYCTRM-QEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESE 134
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEE 193
LL+NIT+H L P+H V+T +EK++LL +Y ++E
Sbjct: 135 LLINITEHELVPEHVVMTVEEKQELLSRYKLKE 167
>UNIPROTKB|Q2T9T3 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9913 "Bos taurus" [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0006468 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 EMBL:BC111280 IPI:IPI00702043
RefSeq:NP_001033182.1 UniGene:Bt.4678 ProteinModelPortal:Q2T9T3
STRING:Q2T9T3 PRIDE:Q2T9T3 GeneID:512971 KEGG:bta:512971 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019
InParanoid:Q2T9T3 KO:K03013 OrthoDB:EOG479F81 NextBio:20870640
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 Uniprot:Q2T9T3
Length = 210
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 44/155 (28%), Positives = 88/155 (56%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVV 102
T++++ DRGY V ++ ++++F+A +G P R L + ++H DP+ ++ V
Sbjct: 16 TIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 75
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLF-QFKVEMFQITD 160
F V + I+ + Q + + +T ++++Q +T A ++ V + ++ +E F +
Sbjct: 76 FPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQE 134
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 135 LLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 169
>GENEDB_PFALCIPARUM|PF13_0341 [details] [associations]
symbol:PF13_0341 "DNA-directed RNA polymerase
2, putative" species:5833 "Plasmodium falciparum" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 GO:GO:0003677 GO:GO:0006366
EMBL:AL844509 GO:GO:0003899 GO:GO:0005665 HOGENOM:HOG000205213
KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287
ProtClustDB:PTZ00061 OMA:DEAETYK RefSeq:XP_001350359.1 HSSP:O27122
ProteinModelPortal:Q8ID59 PRIDE:Q8ID59
EnsemblProtists:PF13_0341:mRNA GeneID:814300 KEGG:pfa:PF13_0341
EuPathDB:PlasmoDB:PF3D7_1364800 Uniprot:Q8ID59
Length = 205
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 54/154 (35%), Positives = 86/154 (55%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISIS--HQSDPSKRILVVFCG 105
T EML+DRGY + E + F+ ++ +D D R ++ IS H++D + RI+V F
Sbjct: 14 TCCEMLEDRGYIMTPREKLENFSTFKEMF-EDNDRQRSKMGISTTHKNDSNNRIIVYFAD 72
Query: 106 PGIVKVNV--IRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDL 161
+ K V +R + ++ + ++ IL+ QN +T A A+ + +E F T+L
Sbjct: 73 E-VKKTGVKPLRELTERMEEK-SIQRAILVTQNILTPFARDAIKEAAPRHIIENFLDTEL 130
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LVNITKH L P+H LT EK+ LL++Y I E +
Sbjct: 131 LVNITKHELVPRHIPLTSDEKKNLLQRYKIMENK 164
>UNIPROTKB|Q8ID59 [details] [associations]
symbol:PF13_0341 "DNA-directed RNA polymerase 2, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0006366 EMBL:AL844509
GO:GO:0003899 GO:GO:0005665 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287
ProtClustDB:PTZ00061 OMA:DEAETYK RefSeq:XP_001350359.1 HSSP:O27122
ProteinModelPortal:Q8ID59 PRIDE:Q8ID59
EnsemblProtists:PF13_0341:mRNA GeneID:814300 KEGG:pfa:PF13_0341
EuPathDB:PlasmoDB:PF3D7_1364800 Uniprot:Q8ID59
Length = 205
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 54/154 (35%), Positives = 86/154 (55%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISIS--HQSDPSKRILVVFCG 105
T EML+DRGY + E + F+ ++ +D D R ++ IS H++D + RI+V F
Sbjct: 14 TCCEMLEDRGYIMTPREKLENFSTFKEMF-EDNDRQRSKMGISTTHKNDSNNRIIVYFAD 72
Query: 106 PGIVKVNV--IRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDL 161
+ K V +R + ++ + ++ IL+ QN +T A A+ + +E F T+L
Sbjct: 73 E-VKKTGVKPLRELTERMEEK-SIQRAILVTQNILTPFARDAIKEAAPRHIIENFLDTEL 130
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LVNITKH L P+H LT EK+ LL++Y I E +
Sbjct: 131 LVNITKHELVPRHIPLTSDEKKNLLQRYKIMENK 164
>TAIR|locus:2174388 [details] [associations]
symbol:RPB5C ""RNA polymerase II fifth largest subunit,
C"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006351 EMBL:AB013396
GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
ProtClustDB:PLN03111 IPI:IPI00523401 RefSeq:NP_200606.1
UniGene:At.55610 ProteinModelPortal:Q9FJL8 SMR:Q9FJL8 STRING:Q9FJL8
PaxDb:Q9FJL8 PRIDE:Q9FJL8 EnsemblPlants:AT5G57980.1 GeneID:835909
KEGG:ath:AT5G57980 TAIR:At5g57980 InParanoid:Q9FJL8 OMA:GYTIEES
PhylomeDB:Q9FJL8 Genevestigator:Q9FJL8 Uniprot:Q9FJL8
Length = 210
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 51/154 (33%), Positives = 90/154 (58%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD-VDR--LRISISHQSDPSKRILVVFC 104
TVL+ML+DRGY + S++NL ++F + + + V++ L +S + +P+ +I V +
Sbjct: 17 TVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKGPNPADKIYVFYP 76
Query: 105 -GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEMFQITDL 161
GP V V VI+ ++ + D + I+++ IT+ A AV +E+F+ +L
Sbjct: 77 EGPK-VGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKMLTIEVFEEAEL 135
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+ NIT+H L K+ VL DQ K+KLL Y++++ Q
Sbjct: 136 VTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQ 169
>ASPGD|ASPL0000062840 [details] [associations]
symbol:AN0752 species:162425 "Emericella nidulans"
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=IEA] [GO:0042797 "tRNA transcription from RNA polymerase
III promoter" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001055 "RNA polymerase
II activity" evidence=IEA] [GO:0001056 "RNA polymerase III
activity" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
EMBL:AACD01000012 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 OrthoDB:EOG40CMS4
RefSeq:XP_658356.1 ProteinModelPortal:Q5BFC8 SMR:Q5BFC8
STRING:Q5BFC8 EnsemblFungi:CADANIAT00001913 GeneID:2876528
KEGG:ani:AN0752.2 OMA:EQDLLVN Uniprot:Q5BFC8
Length = 235
Score = 131 (51.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 99 ILVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKV-EMF 156
I + FC + +R+ + + TG I I + I+ A + + ++ E F
Sbjct: 97 IYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTG-IFITKTPISPSAVRLLSGIPGRICEHF 155
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
Q DLLVNIT+H L PKH +L+ +EK KLL++Y ++E Q
Sbjct: 156 QEQDLLVNITRHELVPKHVLLSPEEKSKLLQRYRLKESQ 194
Score = 77 (32.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIY-GQD--PDVDRLRI 87
TV EML+DRGY V E+ + + +F+ Y G+ P ++L+I
Sbjct: 25 TVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKI 67
>DICTYBASE|DDB_G0291636 [details] [associations]
symbol:rpb5 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISS] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
dictyBase:DDB_G0291636 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006366 GO:GO:0006383 GO:GO:0006360
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 GO:GO:0005665
eggNOG:COG2012 KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 RefSeq:XP_635268.1
HSSP:P20434 ProteinModelPortal:Q54EH2 STRING:Q54EH2 GeneID:8628212
KEGG:ddi:DDB_G0291636 ProtClustDB:PTZ00061 Uniprot:Q54EH2
Length = 197
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 54/154 (35%), Positives = 81/154 (52%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISIS--HQSDPSKRILVVFCG 105
TVL+ML DR Y + E Q+ Y ++ V R +++ + DP+ I V F
Sbjct: 13 TVLQMLSDREYIITAYE-----QE----YPRESFVSRENLTMYCVKKDDPTDSIYVFFPD 63
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QFK---VEMFQITDL 161
V V I+ + + +R +I++ QN IT A +A+ F Q K +E F +L
Sbjct: 64 TPKVGVTQIKKYVDIMKDRQANRAIIVVQQN-ITPFAKQALAEFSQEKKITLEQFNEAEL 122
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LVNIT H L PKH +LT +EK +LL +Y ++E Q
Sbjct: 123 LVNITHHQLVPKHILLTKEEKLELLTRYKMKESQ 156
>TAIR|locus:2089338 [details] [associations]
symbol:AT3G16680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
ProDom:PD005155 GO:GO:0005634 EMBL:CP002686 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
SUPFAM:SSF53036 IPI:IPI00538237 RefSeq:NP_188290.1 UniGene:At.53338
ProteinModelPortal:F4J2R9 SMR:F4J2R9 EnsemblPlants:AT3G16680.1
GeneID:820920 KEGG:ath:AT3G16680 Uniprot:F4J2R9
Length = 87
Score = 112 (44.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 114 IRSIISQIVNRDTLTGLILILQN--QITSQATKAVGLFQ--FKVEMFQITDLLVNITKHV 169
++ I Q+ + + IL++Q+ + QA +G F +E+FQ +L+VN+ +HV
Sbjct: 1 MKKYIDQLKSANVFRA-ILVVQDIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHV 59
Query: 170 LKPKHQVLTDQEKEKLLKK 188
P+HQ LT +EK+K L++
Sbjct: 60 FVPEHQALTTEEKQKFLER 78
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 225 201 0.00089 111 3 11 22 0.49 32
31 0.45 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 588 (63 KB)
Total size of DFA: 162 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.02u 0.13s 21.15t Elapsed: 00:00:01
Total cpu time: 21.02u 0.13s 21.15t Elapsed: 00:00:01
Start: Fri May 10 08:49:15 2013 End: Fri May 10 08:49:16 2013