BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027294
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q757H7|RPAB1_ASHGO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RPB5 PE=3 SV=1
Length = 215
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 13/173 (7%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS 93
+ R+ R + + RTV EM++DRGY + E++LS++DF+A Y D R +S QS
Sbjct: 4 DNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYC-DSMGRPQRKMMSFQS 62
Query: 94 DPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQAT 143
+P++ L V FC V + +++ + I ++ TG I I QN IT A
Sbjct: 63 NPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTG-IFIYQNGITPSAL 121
Query: 144 KAV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
K + + +E F T L+VNIT H L PKH L+D+EK++LLK+Y ++E Q
Sbjct: 122 KLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQ 174
>sp|Q9N5K2|RPAB1_CAEEL DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis elegans GN=rpb-5 PE=3 SV=1
Length = 211
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 98/165 (59%), Gaps = 8/165 (4%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ YG P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++I Q+ ++ ++ I+++Q +T A +++G +
Sbjct: 67 DDPADQMFVFFPEDAKIGIKTIKAICQQMQEQN-ISRAIIVVQTGMTPSAKQSIGDMAPK 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+ +E F +L+VNIT+H L P+H V+T +EK +LL +Y +++ Q
Sbjct: 126 YMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQ 170
>sp|A8XGH1|RPAB1_CAEBR DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1
Length = 211
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 98/165 (59%), Gaps = 8/165 (4%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ +G P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++I Q+ ++ ++ I+++Q +T A +++G +
Sbjct: 67 DDPADQMFVFFPEDTKIGIKTIKAICQQMQEQN-ISRAIIVVQTGMTPSAKQSIGDMAPK 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+ +E F +L+VNIT+H L P+H V+T +EK +LL +Y +++ Q
Sbjct: 126 YMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQ 170
>sp|Q9P4B9|RPAB1_KLUMA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1
Length = 215
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 90/166 (54%), Gaps = 13/166 (7%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKR-- 98
R + + RTV EM++DRGY + EI+LS++DF+ Y D R +S QS+P++
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYC-DSMGKPQRKMMSFQSNPTEESI 69
Query: 99 --------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ 150
+ V FC V V +++ + I ++ TG I I Q+ IT A K +
Sbjct: 70 EKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAA 128
Query: 151 FKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
V E F L+VNIT H L PKH L+D EK++LLK+Y ++E Q
Sbjct: 129 PAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQ 174
>sp|Q6CJ62|RPAB1_KLULA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RPB5 PE=3
SV=1
Length = 215
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 13/170 (7%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + +TV EM++DRGY + EI+LS++DF+A Y D R +S QS+P+
Sbjct: 7 RNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYC-DSMGKPQRKMMSFQSNPT 65
Query: 97 KR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
+ + V FC V V +++ + I ++ TG I I Q+ IT A K +
Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKIL 124
Query: 147 GLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
V E F L+VNIT H L PKH L++ EK++LLK+Y ++E Q
Sbjct: 125 PTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQ 174
>sp|Q6FQA6|RPAB1_CANGA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=RPB5 PE=3 SV=1
Length = 215
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 13/166 (7%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKR-- 98
R + + RTV EM++DRGY +A E++L+++DF+ Y D R +S Q++P++
Sbjct: 11 RLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYC-DSMGRAQRKMMSFQANPTEESM 69
Query: 99 --------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLF 149
+ V FC V V +++ + I + TG I I QN IT A K V +
Sbjct: 70 TKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTG-IFIYQNNITPSAMKLVPSIP 128
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+E F L+VNIT H L PKH L ++EK +LLK+Y ++E Q
Sbjct: 129 PATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQ 174
>sp|P20434|RPAB1_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPB5 PE=1 SV=1
Length = 215
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 13/170 (7%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++P+
Sbjct: 7 RNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQANPT 65
Query: 97 KR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
+ + V FC V V +++ + I ++ TG I + QN IT A K V
Sbjct: 66 EESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLV 124
Query: 147 -GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+ +E F L+VNIT H L PKH L+ EK +LLK+Y ++E Q
Sbjct: 125 PSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQ 174
>sp|Q09191|RPAB1_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb5 PE=1 SV=1
Length = 210
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISI-SHQSD 94
++ +R + + +T +++ DRGY V+ +E++L++ F+A++ G ++DR +S + S+
Sbjct: 6 KNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSN 65
Query: 95 PSKR--ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
S + I + F V + +R+ + + + + TG ILI N +T A K + Q
Sbjct: 66 DSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTG-ILIYANSMTPSAAKIIATVTGQ 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
F +E FQ +DL+VNIT H L PKH +L+ EK++LL +Y + E Q
Sbjct: 125 FTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQ 169
>sp|Q5R587|RPAB1_PONAB DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo
abelii GN=POLR2E PE=2 SV=1
Length = 210
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 95/169 (56%), Gaps = 8/169 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRIS 88
+ ++ R + R+T++++ DRGY V E++ ++++FRA +G P R L +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 149 F--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 169
>sp|Q6BIJ0|RPAB1_DEBHA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RPB5 PE=3 SV=1
Length = 214
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+++ R R + S +TV EM++DRGY + EI++S+ +FR+ +V + ++ +
Sbjct: 1 MEDTDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKL-MCF 59
Query: 92 QSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q++P+ L V FC V + +R+ I ++ TG I I Q+ IT
Sbjct: 60 QANPTAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQSSITPS 118
Query: 142 ATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
A K + +E FQ DL+VNIT H L PKH L EK++LL++Y ++E Q
Sbjct: 119 ANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQ 173
>sp|Q6CA26|RPAB1_YARLI DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPB5
PE=3 SV=1
Length = 212
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 13/172 (7%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
S D+ + + RT E++KDRGY + E+NLS F + DP ++ + +
Sbjct: 2 SSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMC-DPMGKPIKKKMCFMAS 60
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
PS I V FC V V +R+ I TG IL+ +N +T A +
Sbjct: 61 PSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATG-ILVYENNMTPSANR 119
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+ + ++ FQ TDLLVNITKHVL P H L+ EK+ LL++Y ++E Q
Sbjct: 120 LIPSVAPATIDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQ 171
>sp|B0BNE2|RPAB1_RAT DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Rattus norvegicus GN=Polr2e PE=2 SV=1
Length = 210
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 95/169 (56%), Gaps = 8/169 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRIS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R L +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 149 F--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQ 169
>sp|Q80UW8|RPAB1_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus
musculus GN=Polr2e PE=2 SV=1
Length = 210
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 95/169 (56%), Gaps = 8/169 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRIS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R L +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 149 F--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQ 169
>sp|P19388|RPAB1_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo
sapiens GN=POLR2E PE=1 SV=4
Length = 210
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 149 F--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 169
>sp|Q2T9T3|RPAB1_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos
taurus GN=POLR2E PE=2 SV=1
Length = 210
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRIS 88
+ ++ R + R+T++++ DRGY V ++ ++++F+A +G P R L +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 149 F--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E Q
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 169
>sp|Q54EH2|RPAB1_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc1
OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2
Length = 197
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+TVL+ML DR Y + E + F + + L + + DP+ I V F
Sbjct: 11 RKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPTDSIYVFFPD 63
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF----QFKVEMFQITDL 161
V V I+ + + +R +I++ QN IT A +A+ F + +E F +L
Sbjct: 64 TPKVGVTQIKKYVDIMKDRQANRAIIVVQQN-ITPFAKQALAEFSQEKKITLEQFNEAEL 122
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
LVNIT H L PKH +LT +EK +LL +Y ++E Q
Sbjct: 123 LVNITHHQLVPKHILLTKEEKLELLTRYKMKESQ 156
>sp|O74019|RPOH_PYRHO DNA-directed RNA polymerase subunit H OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoH PE=3 SV=1
Length = 82
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
NI KHVL P+H++L+++EK+ LL+KY I Q
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQ 39
>sp|Q9V116|RPOH_PYRAB DNA-directed RNA polymerase subunit H OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rpoH PE=3 SV=1
Length = 82
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
NI KHVL P+H++L+++EK+ LL+KY I Q
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQ 39
>sp|A1USR8|RPOA_BARBK DNA-directed RNA polymerase subunit alpha OS=Bartonella
bacilliformis (strain ATCC 35685 / KC583) GN=rpoA PE=3
SV=1
Length = 337
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG A+ ++ + +F +I G DV + I+I + + KRI+
Sbjct: 46 RRILLSSL--RGAAITAVQVEGVLHEFSSIPGVREDVADIILNIKEIAIRMEEEGPKRIV 103
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPGIVK IR++
Sbjct: 104 VCKEGPGIVKAGDIRTV 120
>sp|C3MB03|RPOA_RHISN DNA-directed RNA polymerase subunit alpha OS=Rhizobium sp. (strain
NGR234) GN=rpoA PE=3 SV=1
Length = 336
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I D SKR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDSKRMV 102
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 103 VRKQGPGVVTAGDIQTV 119
>sp|Q91F72|454R_IIV6 Putative DNA-directed RNA polymerase subunit 454R OS=Invertebrate
iridescent virus 6 GN=IIV6-454R PE=3 SV=1
Length = 184
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 118 ISQIVN--RDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQ 175
+SQI++ + + +I IT+ K + KVE+F DL +NITK+ L+P
Sbjct: 59 LSQIIDFSSNEYVCVTIICDGSITTNVKKIEQTTKGKVEIFHNKDLQMNITKYHLQPLFN 118
Query: 176 VLTDQEKEKLLKKY 189
L D+E + KKY
Sbjct: 119 KLLDEEAKDFKKKY 132
>sp|C6A1F8|RPOH_THESM DNA-directed RNA polymerase subunit H OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rpoH PE=3 SV=1
Length = 82
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+ I HVL P+H+VL+ +E E+LLKKY+I+ Q
Sbjct: 7 LTIFDHVLVPEHRVLSKEETEELLKKYNIKPSQ 39
>sp|A6U883|RPOA_SINMW DNA-directed RNA polymerase subunit alpha OS=Sinorhizobium medicae
(strain WSM419) GN=rpoA PE=3 SV=1
Length = 336
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I D +KR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMV 102
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 103 VRKQGPGVVTAGDIQTV 119
>sp|Q925Z2|RPOA_RHIME DNA-directed RNA polymerase subunit alpha OS=Rhizobium meliloti
(strain 1021) GN=rpoA PE=1 SV=1
Length = 336
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I D +KR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMV 102
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 103 VRKQGPGVVTAGDIQTV 119
>sp|B5ZZ57|RPOA_RHILW DNA-directed RNA polymerase subunit alpha OS=Rhizobium
leguminosarum bv. trifolii (strain WSM2304) GN=rpoA PE=3
SV=1
Length = 336
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I D +KR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMV 102
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 103 VRKQGPGVVTAGDIQTV 119
>sp|Q1MIB7|RPOA_RHIL3 DNA-directed RNA polymerase subunit alpha OS=Rhizobium
leguminosarum bv. viciae (strain 3841) GN=rpoA PE=3 SV=1
Length = 336
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I D +KR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMV 102
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 103 VRKQGPGVVTAGDIQTV 119
>sp|Q2K9J2|RPOA_RHIEC DNA-directed RNA polymerase subunit alpha OS=Rhizobium etli (strain
CFN 42 / ATCC 51251) GN=rpoA PE=3 SV=1
Length = 336
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I D +KR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMV 102
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 103 VRKQGPGVVTAGDIQTV 119
>sp|B3PWU5|RPOA_RHIE6 DNA-directed RNA polymerase subunit alpha OS=Rhizobium etli (strain
CIAT 652) GN=rpoA PE=3 SV=1
Length = 336
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I D +KR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMV 102
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 103 VRKQGPGVVTAGDIQTV 119
>sp|B9JDV2|RPOA_AGRRK DNA-directed RNA polymerase subunit alpha OS=Agrobacterium
radiobacter (strain K84 / ATCC BAA-868) GN=rpoA PE=3
SV=1
Length = 336
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I D +KR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMV 102
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 103 VRKQGPGVVTAGDIQTV 119
>sp|B9JVR1|RPOA_AGRVS DNA-directed RNA polymerase subunit alpha OS=Agrobacterium vitis
(strain S4 / ATCC BAA-846) GN=rpoA PE=3 SV=1
Length = 336
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I D +KR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMV 102
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 103 VRKQGPGVVTAGDIQTV 119
>sp|Q6FZE6|RPOA_BARQU DNA-directed RNA polymerase subunit alpha OS=Bartonella quintana
(strain Toulouse) GN=rpoA PE=3 SV=1
Length = 337
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG A+ +I+ + +F +I G DV + I++ Q + KR++
Sbjct: 46 RRVLLSSL--RGAAITAVQIDGVLHEFSSIPGVREDVTDIILNIKEIALRMQEEGPKRVV 103
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V+ I ++
Sbjct: 104 VCKEGPGVVRAGDINTV 120
>sp|P0A4E4|RPOA_RHIRD DNA-directed RNA polymerase subunit alpha OS=Rhizobium radiobacter
GN=rpoA PE=3 SV=1
Length = 336
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I D SKR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDSKRMV 102
Query: 101 VVFCGPGIVKVNVIRSIIS-QIVNRD 125
V GPG V I+++ +I+N D
Sbjct: 103 VRKQGPGSVTAGDIQTVGDIEILNPD 128
>sp|P0A4E3|RPOA_AGRT5 DNA-directed RNA polymerase subunit alpha OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=rpoA PE=3 SV=1
Length = 336
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I D SKR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDSKRMV 102
Query: 101 VVFCGPGIVKVNVIRSIIS-QIVNRD 125
V GPG V I+++ +I+N D
Sbjct: 103 VRKQGPGSVTAGDIQTVGDIEILNPD 128
>sp|Q8U0M2|RPOH_PYRFU DNA-directed RNA polymerase subunit H OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoH
PE=3 SV=1
Length = 82
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSI 191
+I HVL P+H+VL+++EK+ LL+KY I
Sbjct: 8 SIFDHVLVPEHRVLSEEEKKALLEKYKI 35
>sp|Q58443|RPOH_METJA DNA-directed RNA polymerase subunit H OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoH PE=1 SV=1
Length = 78
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 25/32 (78%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+T H+L PKH+++ +E E++LK+Y+I+ +Q
Sbjct: 2 KVTDHILVPKHEIVPKEEVEEILKRYNIKIQQ 33
>sp|Q98N33|RPOA_RHILO DNA-directed RNA polymerase subunit alpha OS=Rhizobium loti (strain
MAFF303099) GN=rpoA PE=3 SV=1
Length = 336
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I + D KR++
Sbjct: 45 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIAGVREDVTDIVLNIKEIAIRMEGDGPKRMV 102
Query: 101 VVFCGPGIVKVNVIRSIIS-QIVNRD 125
V GPG V I+++ +I+N D
Sbjct: 103 VRKQGPGAVLAGDIQTVGDVEILNPD 128
>sp|B1LWP9|RPOA_METRJ DNA-directed RNA polymerase subunit alpha OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=rpoA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L+ G AV +I+ + +F +I G DV + I+I Q+D KR+
Sbjct: 48 RRVLLSSLQ--GAAVTSVQIDGVLHEFSSIPGVREDVTDIVLNIKTIAIRSQTDAPKRMT 105
Query: 101 VVFCGPGIVKVNVIRSIIS-QIVNRD 125
+ GPG+V I ++ QI+N D
Sbjct: 106 LRKTGPGLVTAGDIGTVGDIQILNPD 131
>sp|A5VQY2|RPOA_BRUO2 DNA-directed RNA polymerase subunit alpha OS=Brucella ovis (strain
ATCC 25840 / 63/290 / NCTC 10512) GN=rpoA PE=3 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I + + KR++
Sbjct: 46 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIRMEGEGPKRMV 103
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 104 VRKEGPGVVTAGDIQTV 120
>sp|Q8G094|RPOA_BRUSU DNA-directed RNA polymerase subunit alpha OS=Brucella suis biovar 1
(strain 1330) GN=rpoA PE=3 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I + + KR++
Sbjct: 46 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIRMEGEGPKRMV 103
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 104 VRKEGPGVVTAGDIQTV 120
>sp|B0CH07|RPOA_BRUSI DNA-directed RNA polymerase subunit alpha OS=Brucella suis (strain
ATCC 23445 / NCTC 10510) GN=rpoA PE=3 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I + + KR++
Sbjct: 46 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIRMEGEGPKRMV 103
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 104 VRKEGPGVVTAGDIQTV 120
>sp|Q57CT2|RPOA_BRUAB DNA-directed RNA polymerase subunit alpha OS=Brucella abortus
biovar 1 (strain 9-941) GN=rpoA PE=3 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I + + KR++
Sbjct: 46 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIRMEGEGPKRMV 103
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 104 VRKEGPGVVTAGDIQTV 120
>sp|Q2YRU0|RPOA_BRUA2 DNA-directed RNA polymerase subunit alpha OS=Brucella abortus
(strain 2308) GN=rpoA PE=3 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I + + KR++
Sbjct: 46 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIRMEGEGPKRMV 103
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 104 VRKEGPGVVTAGDIQTV 120
>sp|B2S655|RPOA_BRUA1 DNA-directed RNA polymerase subunit alpha OS=Brucella abortus
(strain S19) GN=rpoA PE=3 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I + + KR++
Sbjct: 46 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIRMEGEGPKRMV 103
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 104 VRKEGPGVVTAGDIQTV 120
>sp|A9M5M5|RPOA_BRUC2 DNA-directed RNA polymerase subunit alpha OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=rpoA PE=3 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I + + KR++
Sbjct: 46 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIRMEGEGPKRMV 103
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 104 VRKEGPGVVTAGDIQTV 120
>sp|B7L0S5|RPOA_METC4 DNA-directed RNA polymerase subunit alpha OS=Methylobacterium
chloromethanicum (strain CM4 / NCIMB 13688) GN=rpoA PE=3
SV=1
Length = 339
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L+ G AV +I+ + +F +I G DV + I+I Q+D KR+
Sbjct: 48 RRVLLSSLQ--GAAVTSVQIDGVLHEFSSIPGVREDVTDIVLNIKTIAIRSQTDQPKRMT 105
Query: 101 VVFCGPGIVKVNVIRSIIS-QIVNRD 125
+ GPG+V I ++ QI+N D
Sbjct: 106 LRKTGPGLVTAGDIGAVGDIQILNPD 131
>sp|Q8YHL6|RPOA_BRUME DNA-directed RNA polymerase subunit alpha OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=rpoA
PE=3 SV=1
Length = 337
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I + + KR++
Sbjct: 46 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIRMEGEGPKRMV 103
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 104 VHKEGPGVVTAGDIQTV 120
>sp|C0RJH6|RPOA_BRUMB DNA-directed RNA polymerase subunit alpha OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=rpoA PE=3 SV=1
Length = 337
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I + + KR++
Sbjct: 46 RRVLLSSL--RGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIRMEGEGPKRMV 103
Query: 101 VVFCGPGIVKVNVIRSI 117
V GPG+V I+++
Sbjct: 104 VHKEGPGVVTAGDIQTV 120
>sp|B1Z768|RPOA_METPB DNA-directed RNA polymerase subunit alpha OS=Methylobacterium
populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
GN=rpoA PE=3 SV=1
Length = 339
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L+ G AV +I+ + +F +I G DV + I+I Q+D KR+
Sbjct: 48 RRVLLSSLQ--GAAVTSVQIDGVLHEFSSIPGVREDVTDIVLNIKTIAIRSQTDQPKRMT 105
Query: 101 VVFCGPGIVKVNVIRSIIS-QIVNRD 125
+ GPG+V I ++ QI+N D
Sbjct: 106 LRKTGPGLVTAGDIGAVGDIQILNPD 131
>sp|A6X0E2|RPOA_OCHA4 DNA-directed RNA polymerase subunit alpha OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rpoA PE=3
SV=1
Length = 337
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L RG AV +I+ + +F +I G DV + I+I + + KR++
Sbjct: 46 RRVLLSSL--RGAAVTAIQIDGVLHEFSSIPGVREDVTDIVLNVKEIAIRMEGEGPKRMV 103
Query: 101 VVFCGPGIVKVNVIRSIIS-QIVNRD 125
V GPG+V I+++ +I+N D
Sbjct: 104 VRKEGPGVVTAGDIQTVGDVEILNPD 129
>sp|Q0BYD8|RPOA_HYPNA DNA-directed RNA polymerase subunit alpha OS=Hyphomonas neptunium
(strain ATCC 15444) GN=rpoA PE=3 SV=1
Length = 342
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL-----RISISHQSDPSKRIL 100
RR +L L+ G A+ +I+ V +F AI G DV + +++I +SD KR++
Sbjct: 50 RRVLLSSLQ--GAAIIGVQIDGVVHEFSAIPGVREDVTTIVLNLKQVAIFMESDTPKRMV 107
Query: 101 VVFCGPGIVKVNVIRS 116
+ GPG VK I +
Sbjct: 108 LRAKGPGEVKAGQIET 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,123,723
Number of Sequences: 539616
Number of extensions: 3184521
Number of successful extensions: 10579
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 10514
Number of HSP's gapped (non-prelim): 88
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)