Query 027294
Match_columns 225
No_of_seqs 142 out of 344
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:40:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_E DNA-directed RNA polyme 100.0 2.9E-61 1E-65 417.9 6.6 176 32-208 1-182 (210)
2 1dzf_A DNA-directed RNA polyme 100.0 4.4E-60 1.5E-64 411.7 9.2 175 32-208 3-187 (215)
3 1eik_A RNA polymerase subunit 99.8 2.6E-19 9E-24 133.8 3.0 48 161-208 1-48 (77)
4 1hmj_A RPB5, protein (subunit 99.7 1.7E-18 5.9E-23 129.6 2.1 46 163-208 1-46 (78)
5 4ayb_H DNA-directed RNA polyme 99.7 3.6E-18 1.2E-22 129.4 2.1 51 158-208 4-54 (84)
6 2yxb_A Coenzyme B12-dependent 62.0 7.8 0.00027 30.9 4.1 83 49-150 38-121 (161)
7 2jmk_A Hypothetical protein TA 60.0 24 0.00082 27.2 6.2 57 69-128 46-106 (111)
8 1y88_A Hypothetical protein AF 53.9 17 0.00058 30.7 5.0 67 119-188 87-159 (199)
9 3ezx_A MMCP 1, monomethylamine 43.9 58 0.002 27.0 6.7 77 49-142 112-191 (215)
10 4f0q_A Restriction endonucleas 42.9 15 0.00051 34.9 3.2 51 104-157 360-410 (456)
11 3gi1_A LBP, laminin-binding pr 28.6 2.6E+02 0.0089 23.8 8.6 43 105-150 208-251 (286)
12 1y80_A Predicted cobalamin bin 27.0 1.2E+02 0.0042 24.2 5.9 74 48-140 107-183 (210)
13 3s5p_A Ribose 5-phosphate isom 26.7 61 0.0021 26.8 4.0 20 43-62 33-52 (166)
14 3ph3_A Ribose-5-phosphate isom 25.0 95 0.0033 25.7 4.8 20 43-62 32-51 (169)
15 3he8_A Ribose-5-phosphate isom 25.0 99 0.0034 25.0 4.8 20 43-62 12-31 (149)
16 2o1e_A YCDH; alpha-beta protei 24.7 3.4E+02 0.012 23.4 9.1 38 106-146 220-257 (312)
17 1pq4_A Periplasmic binding pro 23.8 3.4E+02 0.012 23.1 8.9 42 106-150 218-260 (291)
18 1o1x_A Ribose-5-phosphate isom 23.6 1.1E+02 0.0037 25.0 4.8 20 43-62 24-43 (155)
19 3cx3_A Lipoprotein; zinc-bindi 22.1 2.9E+02 0.0098 23.4 7.6 38 106-146 207-244 (284)
20 1ccw_A Protein (glutamate muta 21.7 32 0.0011 26.3 1.3 71 48-137 22-93 (137)
21 2vld_A NUCS, UPF0286 protein p 21.3 1.2E+02 0.004 26.5 5.0 70 84-158 158-230 (251)
22 1wd5_A Hypothetical protein TT 20.0 3.4E+02 0.011 21.6 7.5 78 105-187 127-204 (208)
No 1
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-61 Score=417.86 Aligned_cols=176 Identities=28% Similarity=0.461 Sum_probs=168.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCCCccChhhhccCHHHHHHHhCCC---CCCCceEEEeecCCCC-CCcEEEEecCCC
Q 027294 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISISHQSDP-SKRILVVFCGPG 107 (225)
Q Consensus 32 md~~~~e~~rL~rvrrTv~EMl~DRGY~V~~~El~~sldeF~~~yg~~---p~r~~L~i~~~~~~dp-~~kI~VfF~~e~ 107 (225)
|++++.|++||||+||||+|||+||||.|+++|+++|+++|+++||+. |+|++|+|++.+.+|| +++|+|||++++
T Consensus 1 m~~~~~e~~rl~rirrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~~~~~r~~l~~~~~~~~dp~~~~i~VfF~~~~ 80 (210)
T 3h0g_E 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEP 80 (210)
T ss_dssp ---CTHHHHHHHGGGSSSSSTTTTTTEECCTTTTSCCHHHHHHHSCCSSSSCCCSSCCCEEEESSCSSCCCEEEECCCSS
T ss_pred CCcchHHHHHHHHHHHHHHHHhcCCCCccCHHHHhCCHHHHHHHhcccCCCCCchheEEEEEcCCCCccCeEEEEECCCC
Confidence 567789999999999999999999999999999999999999999875 8899999999999999 999999999999
Q ss_pred ccchhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHHhhhc--cceeeeecceeeeecccccccCCcccCChHHHHHH
Q 027294 108 IVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKL 185 (225)
Q Consensus 108 kVgvK~Ir~~~e~m~~~env~r~IlVvq~~lT~~Ark~i~~~~--~~IEvF~E~ELl~nit~H~lVPkH~vl~~eEk~~l 185 (225)
+||+|+||.|+++| .++|++++|||+|+++||+|++++.+++ ++||+|+|+||+||||+|+|||+|++||+|||++|
T Consensus 81 ~vgvk~Ir~~~~~~-~~en~~~~IiV~q~~~t~~A~~~l~~~~~~~~iE~F~e~eLlvnit~H~lVPkH~~ls~eE~~~l 159 (210)
T 3h0g_E 81 SVGIKEMRTFVHTL-GDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKEL 159 (210)
T ss_dssp SCCTTTTGGGTHHH-HHTTCSEEEECCSSCCCSHHHHTTTTTCTTCEECCCCSSSSCSCTTSBTTBCCEECCCHHHHHHH
T ss_pred ccChHHHHHHHHHH-HHcCCceEEEEECCCCCHHHHHHHHHhCcCcEEEEEeehHeeEecccccccCcEEEcCHHHHHHH
Confidence 99999999999999 9999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred HHHcCCCCCCccceecCCCcccc
Q 027294 186 LKKYSIEEKQQHNRHLCWTTTKQ 208 (225)
Q Consensus 186 L~~y~i~~~QLP~I~~~d~~~~~ 208 (225)
|++|+++++|||||+.+||..+-
T Consensus 160 L~~y~i~~~qLP~I~~~DPv~~~ 182 (210)
T 3h0g_E 160 LDRYKLRETQLPRIQLADPVARY 182 (210)
T ss_dssp HHHTCCCTTTSCCCCTTCHHHHH
T ss_pred HHHcCCCHHHCCcccccCcchhh
Confidence 99999999999999999998764
No 2
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=100.00 E-value=4.4e-60 Score=411.67 Aligned_cols=175 Identities=31% Similarity=0.476 Sum_probs=167.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCCCccChhhhccCHHHHHHHhCC---CCCCCceEEEeecCCCCCCcE------EEE
Q 027294 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ---DPDVDRLRISISHQSDPSKRI------LVV 102 (225)
Q Consensus 32 md~~~~e~~rL~rvrrTv~EMl~DRGY~V~~~El~~sldeF~~~yg~---~p~r~~L~i~~~~~~dp~~kI------~Vf 102 (225)
|+ ++.++.|||||||||+|||+||||.|+++|+++|+++|+++||+ .|+|++|+|++++.+||++++ +||
T Consensus 3 m~-~~~e~~rl~r~rrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~g~p~r~~L~~~~~~~~d~~~k~~~~~~~~Vf 81 (215)
T 1dzf_A 3 QE-NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVE 81 (215)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHTTBCCCHHHHTCCHHHHHHHHBCTTSCBCGGGTCEEECBCHHHHHHCTTCCCEEEE
T ss_pred cc-hHHHHHHHHHHHHHHHHHHhcCCCccCHhHhcCCHHHHHHHHccccCCCchhheEEEecCCCChhhhhccCCceEEE
Confidence 44 46889999999999999999999999999999999999999987 689999999999999999998 999
Q ss_pred ecCCCccchhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHHhhhc-cceeeeecceeeeecccccccCCcccCChHH
Q 027294 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQE 181 (225)
Q Consensus 103 F~~e~kVgvK~Ir~~~e~m~~~env~r~IlVvq~~lT~~Ark~i~~~~-~~IEvF~E~ELl~nit~H~lVPkH~vl~~eE 181 (225)
|+++++||+|+||+|+++| +++|++++|||+|+++||+|++++.+++ ++||+|+|+||+||||+|+|||+|++||+||
T Consensus 82 F~~~~~vgvk~ir~~~~~~-~~e~~~~~IlV~q~~itp~Ak~~l~~~~~~~iE~F~e~eL~vni~~H~lVP~H~~l~~eE 160 (215)
T 1dzf_A 82 FCDEPSVGVKTMKTFVIHI-QEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDE 160 (215)
T ss_dssp ECSSSEECHHHHHHHHHHH-HHTTCSEEEEEESSEECHHHHTTTTSSTTCEEEEEEHHHHSSCGGGSTTSCEEEECCHHH
T ss_pred ecCCCccchHHHHHHHHHH-HhcCCceEEEEECCCCChHHHHHHHHhcCceEEEeehHHheeccccceeccceEEccHHH
Confidence 9999999999999999999 9999999999999999999999999998 8999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccceecCCCcccc
Q 027294 182 KEKLLKKYSIEEKQQHNRHLCWTTTKQ 208 (225)
Q Consensus 182 k~~lL~~y~i~~~QLP~I~~~d~~~~~ 208 (225)
|++||++|+++++|||||+.+||..+-
T Consensus 161 ~~~lL~~y~i~~~qLP~I~~~DPvar~ 187 (215)
T 1dzf_A 161 KRELLKRYRLKESQLPRIQRADPVALY 187 (215)
T ss_dssp HHHHHHHTTCCGGGSCEECTTCHHHHH
T ss_pred HHHHHHHcCCCHHHCCceeccChhhHH
Confidence 999999999999999999999997653
No 3
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=99.75 E-value=2.6e-19 Score=133.76 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=46.0
Q ss_pred eeeecccccccCCcccCChHHHHHHHHHcCCCCCCccceecCCCcccc
Q 027294 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQQHNRHLCWTTTKQ 208 (225)
Q Consensus 161 Ll~nit~H~lVPkH~vl~~eEk~~lL~~y~i~~~QLP~I~~~d~~~~~ 208 (225)
|+||||+|+|||+|++||+|||++||++|+++++|||||+.+||..+-
T Consensus 1 l~vnIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLP~I~~~DPvar~ 48 (77)
T 1eik_A 1 MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKA 48 (77)
T ss_dssp CCCCCCSSSSCCEEEEECHHHHHHHHHHTTCCTTTSCCCBTTSHHHHG
T ss_pred CcccCccceecCCEEEcCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHH
Confidence 789999999999999999999999999999999999999999998664
No 4
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=99.71 E-value=1.7e-18 Score=129.59 Aligned_cols=46 Identities=28% Similarity=0.475 Sum_probs=44.3
Q ss_pred eecccccccCCcccCChHHHHHHHHHcCCCCCCccceecCCCcccc
Q 027294 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQQHNRHLCWTTTKQ 208 (225)
Q Consensus 163 ~nit~H~lVPkH~vl~~eEk~~lL~~y~i~~~QLP~I~~~d~~~~~ 208 (225)
||||+|+|||+|++||+|||++||++|+++++|||||+.+||..+-
T Consensus 1 vnIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLPrI~~~DPvar~ 46 (78)
T 1hmj_A 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQE 46 (78)
T ss_pred CCccceeeCCCeEECCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHH
Confidence 7999999999999999999999999999999999999999998764
No 5
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=99.69 E-value=3.6e-18 Score=129.39 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=45.1
Q ss_pred cceeeeecccccccCCcccCChHHHHHHHHHcCCCCCCccceecCCCcccc
Q 027294 158 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQQHNRHLCWTTTKQ 208 (225)
Q Consensus 158 E~ELl~nit~H~lVPkH~vl~~eEk~~lL~~y~i~~~QLP~I~~~d~~~~~ 208 (225)
.++++||||+|+|||+|++||+||+++||++|+++++|||+|+.+||..+.
T Consensus 4 ~~~~~~Ni~~H~LVPkH~vLs~eE~~~ll~~y~i~~~qLP~I~~~DPva~~ 54 (84)
T 4ayb_H 4 SSNRKIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARS 54 (84)
T ss_dssp ----CCCCSSSSSCCEEEECCHHHHHHHHHHHTCCGGGSCCEESSSHHHHH
T ss_pred cccceecccccccCCCeEECCHHHHHHHHHHhcCCHhHCCeecccCHhHHh
Confidence 468999999999999999999999999999999999999999999997653
No 6
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=62.03 E-value=7.8 Score=30.87 Aligned_cols=83 Identities=13% Similarity=0.249 Sum_probs=51.9
Q ss_pred HHHHhcCCCCccChhhhccCHHHHHHHhCC-CCCCCceEEEeecCCCCCCcEEEEecCCCccchhhHHHHHHHHhhcCCC
Q 027294 49 VLEMLKDRGYAVALSEINLSVQDFRAIYGQ-DPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTL 127 (225)
Q Consensus 49 v~EMl~DRGY~V~~~El~~sldeF~~~yg~-~p~r~~L~i~~~~~~dp~~kI~VfF~~e~kVgvK~Ir~~~e~m~~~env 127 (225)
+.-||++.||.|..--...+.++|.+.... .++ -+.++ +.. .-.+..++.+++.+ .+.+.
T Consensus 38 va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~d--iV~lS--------------~~~--~~~~~~~~~~i~~L-~~~g~ 98 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVD--VIGVS--------------ILN--GAHLHLMKRLMAKL-RELGA 98 (161)
T ss_dssp HHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCS--EEEEE--------------ESS--SCHHHHHHHHHHHH-HHTTC
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCC--EEEEE--------------eec--hhhHHHHHHHHHHH-HhcCC
Confidence 446889999999987778899999876532 222 12222 211 24577889999998 77766
Q ss_pred cEEEEEEcCCCCHHHHHHHhhhc
Q 027294 128 TGLILILQNQITSQATKAVGLFQ 150 (225)
Q Consensus 128 ~r~IlVvq~~lT~~Ark~i~~~~ 150 (225)
....|++.+.+.+..-..+..++
T Consensus 99 ~~i~v~vGG~~~~~~~~~l~~~G 121 (161)
T 2yxb_A 99 DDIPVVLGGTIPIPDLEPLRSLG 121 (161)
T ss_dssp TTSCEEEEECCCHHHHHHHHHTT
T ss_pred CCCEEEEeCCCchhcHHHHHHCC
Confidence 44545666766654333344443
No 7
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=60.00 E-value=24 Score=27.20 Aligned_cols=57 Identities=14% Similarity=0.269 Sum_probs=41.9
Q ss_pred HHHHHHHhCC--C--CCCCceEEEeecCCCCCCcEEEEecCCCccchhhHHHHHHHHhhcCCCc
Q 027294 69 VQDFRAIYGQ--D--PDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLT 128 (225)
Q Consensus 69 ldeF~~~yg~--~--p~r~~L~i~~~~~~dp~~kI~VfF~~e~kVgvK~Ir~~~e~m~~~env~ 128 (225)
+.+|.++|.- . |.-...-|++-+ ...+-+-|-|++......+.|+.+++.. ...|.+
T Consensus 46 l~dFIsryARTDEImPEDKTvGFvviN--~dKK~mSvsFsd~~~~~K~~i~ei~kky-kd~Gyk 106 (111)
T 2jmk_A 46 MMDFISRFARTDEIMPEDKTVGFVVVN--ADKKLMSVSFSDIDENMKKVIKATAEKF-KNKGFK 106 (111)
T ss_dssp HHHHHHHHCCCSCCCSSCEEEEEEEEE--TTTTEEEEEECSCCTTHHHHHHHHHHHG-GGGCCE
T ss_pred HHHHHHHhhcccccCCCCceeEEEEEe--cCCeEEEEEeehhhhhHHHHHHHHHHHh-hcCCce
Confidence 7899999963 2 444455555543 3334588999999889999999999998 766654
No 8
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=53.89 E-value=17 Score=30.66 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=46.6
Q ss_pred HHHhhcCCCcEEEEEEcCCCCHHHHHHHhhhccceeee-----ecceeeeecccccccC-CcccCChHHHHHHHHH
Q 027294 119 SQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMF-----QITDLLVNITKHVLKP-KHQVLTDQEKEKLLKK 188 (225)
Q Consensus 119 e~m~~~env~r~IlVvq~~lT~~Ark~i~~~~~~IEvF-----~E~ELl~nit~H~lVP-kH~vl~~eEk~~lL~~ 188 (225)
..+ ...+..++++|+-+..|+.|++.....+ |++. ...+|.=-|.+..|-| ----||++|+++||++
T Consensus 87 ~d~-~~~~a~~g~VVTn~~FT~~A~~~A~~~~--I~Li~wd~p~g~~L~~~i~~~~l~pi~~l~~~~~e~~~l~~~ 159 (199)
T 1y88_A 87 LDV-EKHGFTQPWIFTNTKFSEEAKKYAGCVG--IKLTGWSYPEKEGIEVLLESKGLYPITILRIDKEVLDELVRA 159 (199)
T ss_dssp HHH-GGGTCSEEEEECSSEECHHHHHHHHHHT--CEEECSSCSTTTSHHHHHHTTTCCBGGGSSCCHHHHHHHHHT
T ss_pred hhh-hccCCCEEEEEECCCCCHHHHHHHHHCC--cEEEECCCCchHHHHHHHHHcCCCCeEEEeeCHHHHhhhhcC
Confidence 344 4558899999999999999998777655 4433 2345544456666666 1126889999998874
No 9
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=43.87 E-value=58 Score=26.96 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=50.0
Q ss_pred HHHHhcCCCCccChhhhccCHHHHHHHhCC-CCCCCceEEEeecCCCCCCcEEEEecCCCccchhhHHHHHHHHhhcCCC
Q 027294 49 VLEMLKDRGYAVALSEINLSVQDFRAIYGQ-DPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTL 127 (225)
Q Consensus 49 v~EMl~DRGY~V~~~El~~sldeF~~~yg~-~p~r~~L~i~~~~~~dp~~kI~VfF~~e~kVgvK~Ir~~~e~m~~~env 127 (225)
+.-||+++||.|..--.+++.++|.+.-.. .|+ -|.+-|+.--.-.+..++.+++.+ .+.+.
T Consensus 112 v~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d----------------~v~l~~S~l~~~~~~~~~~~i~~l-~~~~~ 174 (215)
T 3ezx_A 112 VTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGE----------------KVLLVGSALMTTSMLGQKDLMDRL-NEEKL 174 (215)
T ss_dssp HHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTS----------------CEEEEEECSSHHHHTHHHHHHHHH-HHTTC
T ss_pred HHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCC----------------EEEEEchhcccCcHHHHHHHHHHH-HHcCC
Confidence 456999999999876567889999765421 122 133323333334567789999999 88887
Q ss_pred --cEEEEEEcCCCCHHH
Q 027294 128 --TGLILILQNQITSQA 142 (225)
Q Consensus 128 --~r~IlVvq~~lT~~A 142 (225)
+--|+|-...+|+..
T Consensus 175 ~~~v~v~vGG~~~~~~~ 191 (215)
T 3ezx_A 175 RDSVKCMFGGAPVSDKW 191 (215)
T ss_dssp GGGSEEEEESSSCCHHH
T ss_pred CCCCEEEEECCCCCHHH
Confidence 344666555566543
No 10
>4f0q_A Restriction endonuclease; cytosine methylation-dependent endonuclease, hydrolase; 2.05A {Mycobacterium SP} PDB: 4f0p_A
Probab=42.94 E-value=15 Score=34.94 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=39.8
Q ss_pred cCCCccchhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHHhhhccceeeee
Q 027294 104 CGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQ 157 (225)
Q Consensus 104 ~~e~kVgvK~Ir~~~e~m~~~env~r~IlVvq~~lT~~Ark~i~~~~~~IEvF~ 157 (225)
..+..||.+.|+.|+..| .+...||+|+-+..|..|++.+..-+..|.++.
T Consensus 360 ~~~~~Vg~~~I~~f~g~l---~~~~~GifITTS~Ft~~A~~ea~~d~~pI~LId 410 (456)
T 4f0q_A 360 QPTSSVSPEQVARVVARL---RRGWIGVYVTTGSFSRQAQVEIIDDQYPVVLIA 410 (456)
T ss_dssp CTTSEECHHHHHHHHTTC---CTTEEEEEEESSEECHHHHHHHHHTTCCEEEEC
T ss_pred cCCCCCCHHHHHHHHHhh---cCCCeEEEEECCcCCHHHHHHHHcCCCcEEEEc
Confidence 345679999999999888 466899999999999999887765444565543
No 11
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=28.59 E-value=2.6e+02 Score=23.81 Aligned_cols=43 Identities=7% Similarity=0.065 Sum_probs=26.8
Q ss_pred CCCccchhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHH-hhhc
Q 027294 105 GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQ 150 (225)
Q Consensus 105 ~e~kVgvK~Ir~~~e~m~~~env~r~IlVvq~~lT~~Ark~i-~~~~ 150 (225)
.+...+.+.|..+++.+ .++++. +|++- ...++...+.+ ++.+
T Consensus 208 ~~~eps~~~l~~l~~~i-k~~~v~-~if~e-~~~~~~~~~~la~~~g 251 (286)
T 3gi1_A 208 PEQEPSPRQLKEIQDFV-KEYNVK-TIFAE-DNVNPKIAHAIAKSTG 251 (286)
T ss_dssp C---CCHHHHHHHHHHH-HHTTCC-EEEEC-TTSCTHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHH-HHcCCC-EEEEe-CCCChHHHHHHHHHhC
Confidence 34568899999999999 999988 55553 44444333444 4444
No 12
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=27.01 E-value=1.2e+02 Score=24.24 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=45.5
Q ss_pred HHHHHhcCCCCccChhhhccCHHHHHHHhCC-CCCCCceEEEeecCCCCCCcEEEEecCCCccchhhHHHHHHHHhhcCC
Q 027294 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQ-DPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDT 126 (225)
Q Consensus 48 Tv~EMl~DRGY~V~~~El~~sldeF~~~yg~-~p~r~~L~i~~~~~~dp~~kI~VfF~~e~kVgvK~Ir~~~e~m~~~en 126 (225)
-+..||+.+||.|..--.+.+.++|.+.-.. .|+ -+.++ +. ..-....++.+++.+ .+.+
T Consensus 107 ~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d--~v~lS--------------~~--~~~~~~~~~~~i~~l-~~~~ 167 (210)
T 1y80_A 107 LVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPD--IVGMS--------------AL--LTTTMMNMKSTIDAL-IAAG 167 (210)
T ss_dssp HHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCS--EEEEE--------------CC--SGGGTHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCC--EEEEe--------------cc--ccccHHHHHHHHHHH-HhcC
Confidence 4567899999999876667888898765421 222 22222 21 123567899999999 7777
Q ss_pred Cc--EEEEEEcCCCCH
Q 027294 127 LT--GLILILQNQITS 140 (225)
Q Consensus 127 v~--r~IlVvq~~lT~ 140 (225)
.. --|+|-....++
T Consensus 168 ~~~~~~v~vGG~~~~~ 183 (210)
T 1y80_A 168 LRDRVKVIVGGAPLSQ 183 (210)
T ss_dssp CGGGCEEEEESTTCCH
T ss_pred CCCCCeEEEECCCCCH
Confidence 63 334444444454
No 13
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=26.66 E-value=61 Score=26.77 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCCccCh
Q 027294 43 YLSRRTVLEMLKDRGYAVAL 62 (225)
Q Consensus 43 ~rvrrTv~EMl~DRGY~V~~ 62 (225)
|..+..+.+.|+++||.|.+
T Consensus 33 ~~lK~~i~~~L~~~G~eV~D 52 (166)
T 3s5p_A 33 RDLRMFLQQRASAHGYEVMD 52 (166)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 56678899999999999977
No 14
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=25.04 E-value=95 Score=25.66 Aligned_cols=20 Identities=40% Similarity=0.694 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCCCccCh
Q 027294 43 YLSRRTVLEMLKDRGYAVAL 62 (225)
Q Consensus 43 ~rvrrTv~EMl~DRGY~V~~ 62 (225)
|..+..+.+.|+++||.|.+
T Consensus 32 ~~lK~~i~~~L~~~G~eV~D 51 (169)
T 3ph3_A 32 YNLKREIADFLKKRGYEVID 51 (169)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 45677899999999999976
No 15
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=24.96 E-value=99 Score=24.96 Aligned_cols=20 Identities=40% Similarity=0.694 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCCCccCh
Q 027294 43 YLSRRTVLEMLKDRGYAVAL 62 (225)
Q Consensus 43 ~rvrrTv~EMl~DRGY~V~~ 62 (225)
|..+..+.+.|+++||.|.+
T Consensus 12 ~~lK~~i~~~L~~~G~eV~D 31 (149)
T 3he8_A 12 YNLKREIADFLKKRGYEVID 31 (149)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 45677889999999999876
No 16
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=24.68 E-value=3.4e+02 Score=23.43 Aligned_cols=38 Identities=5% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCccchhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHH
Q 027294 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146 (225)
Q Consensus 106 e~kVgvK~Ir~~~e~m~~~env~r~IlVvq~~lT~~Ark~i 146 (225)
+...+.+.|..+++.+ .+++|. +| ++....++...+.|
T Consensus 220 ~~eps~~~l~~l~~~i-k~~~v~-~I-f~e~~~~~~~~~~i 257 (312)
T 2o1e_A 220 DQEPSAASLAKLKTYA-KEHNVK-VI-YFEEIASSKVADTL 257 (312)
T ss_dssp SSCCCHHHHHHHHHHT-TSSCCC-EE-ECSSCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HHcCCC-EE-EEeCCCChHHHHHH
Confidence 4568899999999999 889987 44 44555666544444
No 17
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=23.77 E-value=3.4e+02 Score=23.10 Aligned_cols=42 Identities=10% Similarity=0.226 Sum_probs=28.1
Q ss_pred CCccchhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHH-hhhc
Q 027294 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQ 150 (225)
Q Consensus 106 e~kVgvK~Ir~~~e~m~~~env~r~IlVvq~~lT~~Ark~i-~~~~ 150 (225)
+...+.+.|..+++.+ +++++. +|++=.+ .++...+.| ++.+
T Consensus 218 ~~eps~~~l~~l~~~i-k~~~v~-~If~e~~-~~~~~~~~ia~~~g 260 (291)
T 1pq4_A 218 GQEPSAQELKQLIDTA-KENNLT-MVFGETQ-FSTKSSEAIAAEIG 260 (291)
T ss_dssp TBCCCHHHHHHHHHHH-HTTTCC-EEEEETT-SCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH-HHcCCC-EEEEeCC-CChHHHHHHHHHcC
Confidence 3567899999999999 999997 5555433 444444444 4444
No 18
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=23.58 E-value=1.1e+02 Score=24.99 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCCCccCh
Q 027294 43 YLSRRTVLEMLKDRGYAVAL 62 (225)
Q Consensus 43 ~rvrrTv~EMl~DRGY~V~~ 62 (225)
|..+..+.+.|.++||.|.+
T Consensus 24 ~~lK~~i~~~L~~~G~eV~D 43 (155)
T 1o1x_A 24 FELKEKVKNYLLGKGIEVED 43 (155)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 45677889999999998876
No 19
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=22.08 E-value=2.9e+02 Score=23.37 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=26.0
Q ss_pred CCccchhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHH
Q 027294 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146 (225)
Q Consensus 106 e~kVgvK~Ir~~~e~m~~~env~r~IlVvq~~lT~~Ark~i 146 (225)
+...+.+.|..+++.+ .++++. +|++ ....++...+.+
T Consensus 207 ~~eps~~~l~~l~~~i-k~~~v~-~if~-e~~~~~~~~~~i 244 (284)
T 3cx3_A 207 EQEPSPRQLTEIQEFV-KTYKVK-TIFT-ESNASSKVAETL 244 (284)
T ss_dssp TCCCCSHHHHHHHHHH-HHTTCC-CEEE-CSSSCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HHcCCC-EEEE-eCCCCcHHHHHH
Confidence 4568899999999999 889998 5544 344444333333
No 20
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=21.74 E-value=32 Score=26.34 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=43.4
Q ss_pred HHHHHhcCCCCccChhhhccCHHHHHHHhCC-CCCCCceEEEeecCCCCCCcEEEEecCCCccchhhHHHHHHHHhhcCC
Q 027294 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQ-DPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDT 126 (225)
Q Consensus 48 Tv~EMl~DRGY~V~~~El~~sldeF~~~yg~-~p~r~~L~i~~~~~~dp~~kI~VfF~~e~kVgvK~Ir~~~e~m~~~en 126 (225)
-+.-||++.||.|..--...+.++|.+..-+ .++ -+.++ +.. .-....++.+++.+ .+.+
T Consensus 22 ~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d--~v~lS--------------~~~--~~~~~~~~~~i~~l-~~~g 82 (137)
T 1ccw_A 22 ILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKAD--AILVS--------------SLY--GQGEIDCKGLRQKC-DEAG 82 (137)
T ss_dssp HHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCS--EEEEE--------------ECS--STHHHHHTTHHHHH-HHTT
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCC--EEEEE--------------ecC--cCcHHHHHHHHHHH-HhcC
Confidence 3457889999999976567889999876532 122 12222 222 23455677788888 7777
Q ss_pred CcEEEEEEcCC
Q 027294 127 LTGLILILQNQ 137 (225)
Q Consensus 127 v~r~IlVvq~~ 137 (225)
.....+++.+.
T Consensus 83 ~~~i~v~vGG~ 93 (137)
T 1ccw_A 83 LEGILLYVGGN 93 (137)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCEEEEECC
Confidence 64343445554
No 21
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=21.35 E-value=1.2e+02 Score=26.47 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=40.5
Q ss_pred ceEEEeecCCCCCCcEEEEecCC--CccchhhHHHHHHHHhhc-CCCcEEEEEEcCCCCHHHHHHHhhhccceeeeec
Q 027294 84 RLRISISHQSDPSKRILVVFCGP--GIVKVNVIRSIISQIVNR-DTLTGLILILQNQITSQATKAVGLFQFKVEMFQI 158 (225)
Q Consensus 84 ~L~i~~~~~~dp~~kI~VfF~~e--~kVgvK~Ir~~~e~m~~~-env~r~IlVvq~~lT~~Ark~i~~~~~~IEvF~E 158 (225)
.+-+++.+.+ ..-++|..--. ..=.+.++..|++.+... .+=.++|||.++ +++.|+.++.+.+ ||+|..
T Consensus 158 ~IDlL~~D~~--g~~VvIElKr~~~~~e~V~QL~~Yl~~l~~~~~~~vrGIlvA~s-~s~~ar~~l~d~g--Ie~v~l 230 (251)
T 2vld_A 158 IVDVMGVDKD--GNIVVLELKRRKADLHAVSQMKRYVDSLKEEYGENVRGILVAPS-LTEGAKKLLEKEG--LEFRKL 230 (251)
T ss_dssp EEEEEEECTT--SCEEEEEECSSCBCHHHHHHHHHHHHHHHHHHCSCEEEEEEESC-BCHHHHHHHHHHT--CEEEEC
T ss_pred ceeEEEECCC--CCEEEEEEeeccCCHhHHHHHHHHHHHHHhccCCCeEEEEEeCC-CCHHHHHHHHHcC--cEEEEe
Confidence 4555555433 22345554331 122255566677776222 244778888765 7999999988765 666554
No 22
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=20.05 E-value=3.4e+02 Score=21.64 Aligned_cols=78 Identities=10% Similarity=0.167 Sum_probs=47.7
Q ss_pred CCCccchhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHHhhhccceeeeecceeeeecccccccCCcccCChHHHHH
Q 027294 105 GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEK 184 (225)
Q Consensus 105 ~e~kVgvK~Ir~~~e~m~~~env~r~IlVvq~~lT~~Ark~i~~~~~~IEvF~E~ELl~nit~H~lVPkH~vl~~eEk~~ 184 (225)
++---+=.|++..++.+ .+.+..+..+++ .-..+.|.+.+.... .+-.|...+-.+.+-. .--+...+|++|...
T Consensus 127 DDvi~TG~Tl~~a~~~L-~~~ga~~V~v~~-~v~~~~~~~~l~~~~-~~v~~~~~~~f~~v~~--~y~~~~~~~~~ev~~ 201 (208)
T 1wd5_A 127 DDGVATGASMEAALSVV-FQEGPRRVVVAV-PVASPEAVERLKARA-EVVALSVPQDFAAVGA--YYLDFGEVTDEDVEA 201 (208)
T ss_dssp CSCBSSCHHHHHHHHHH-HTTCCSEEEEEE-EEBCHHHHHHHHTTS-EEEEEECCTTCCCGGG--GBSCCCCCCHHHHHH
T ss_pred CCCccHHHHHHHHHHHH-HHcCCCEEEEEE-EEcCHHHHHHhcccC-cEEEEecCcchhhHHH--HhcCCCCCCHHHHHH
Confidence 55444567888888888 778887766555 223456666665443 3333333222233332 224567999999999
Q ss_pred HHH
Q 027294 185 LLK 187 (225)
Q Consensus 185 lL~ 187 (225)
+|+
T Consensus 202 ~l~ 204 (208)
T 1wd5_A 202 ILL 204 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
Done!