BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027295
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|F Chain F, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1HH4|D Chain D, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|E Chain E, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 204
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 85/150 (56%), Gaps = 6/150 (4%)
Query: 77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
Q +++E E DKDDESLR++KE LLG V + + P V + L + S P ++
Sbjct: 32 QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 89
Query: 134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
L+ K S F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G+
Sbjct: 90 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 148
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
+ P+AE Y P + P G ARGSYS K
Sbjct: 149 YGPRAEEYEFLTPVEEAPKGMLARGSYSIK 178
>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
pdb|1FST|B Chain B, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
Length = 182
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 85/150 (56%), Gaps = 6/150 (4%)
Query: 77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
Q +++E E DKDDESLR++KE LLG V + + P V + L + S P ++
Sbjct: 10 QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 67
Query: 134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
L+ K S F LKEG Y ++ SF+V IVSG+KY ++ G+ +D+T M+G+
Sbjct: 68 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGS 126
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
+ P+AE Y P + P G ARGSYS K
Sbjct: 127 YGPRAEEYEFLTPVEEAPKGMLARGSYSIK 156
>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 219
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLS 135
Q +++E E DKDDESLR++KE LLG V + V L+L T P ++ L+
Sbjct: 47 QKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLT 106
Query: 136 VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS 195
K S F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++
Sbjct: 107 GDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYG 165
Query: 196 PQAEPYTQELPEDTTPSGFFARGSYSAK 223
P+AE Y P + P G ARGSY+ K
Sbjct: 166 PRAEEYEFLTPMEEAPKGMLARGSYNIK 193
>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 204
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLS 135
Q +++E E DKDDESLR++KE LLG V + V L+L T P ++ L+
Sbjct: 32 QKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLT 91
Query: 136 VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS 195
K S F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++
Sbjct: 92 GDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYG 150
Query: 196 PQAEPYTQELPEDTTPSGFFARGSYSAK 223
P+AE Y P + P G ARGSY+ K
Sbjct: 151 PRAEEYEFLTPMEEAPKGMLARGSYNIK 178
>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex
Length = 180
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
PQ +LKE E DKDDESL ++K+ LLG D V + P V + L + S P I +
Sbjct: 7 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 64
Query: 135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
+ + K LKEGS Y ++ F+V +IVSGLKY ++TG+KVD M+G+
Sbjct: 65 DLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGS 124
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
+ P+ E Y P + P G ARG+Y K
Sbjct: 125 YGPRPEEYEFLTPVEEAPKGMLARGTYHNK 154
>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant
pdb|2JHW|B Chain B, Crystal Structure Of Rhogdi E155a, E157a Mutant
Length = 138
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEAYAFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 98 VEEAPKGMLARGSYSIK 114
>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant
pdb|1FT3|B Chain B, Crystal Structure Of Truncated Rhogdi K141a Mutant
Length = 139
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D+T M+G++ P+AE Y P
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDATDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 97 VEEAPKGMLARGSYSIK 113
>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant
pdb|2JHZ|B Chain B, Crystal Structure Of Rhogdi E155s, E157s Mutant
Length = 138
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y+ P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAESYSFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 98 VEEAPKGMLARGSYSIK 114
>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHX|B Chain B, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHY|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
Length = 138
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEHYHFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 98 VEEAPKGMLARGSYSIK 114
>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|B Chain B, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|C Chain C, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|D Chain D, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
Length = 138
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++TG+ +D+T M+G++ P+AE Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRTGVTIDTTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 98 VEEAPKGMLARGSYSIK 114
>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|B Chain B, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|C Chain C, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|D Chain D, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
Length = 139
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y P
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 97 VEEAPKGMLARGSYSIK 113
>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
pdb|1FT0|B Chain B, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
Length = 139
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y + SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y P
Sbjct: 37 FVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 97 VEEAPKGMLARGSYSIK 113
>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple
Mutant
Length = 139
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+ +D+T M+G++ P+AE Y P
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 97 VEEAPKGMLARGSYSIK 113
>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20
Structures
pdb|1GDF|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr,
Minimized Average Structure
Length = 145
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y P
Sbjct: 43 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 102
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSY+ K
Sbjct: 103 MEEAPKGMLARGSYNIK 119
>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant
Length = 138
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+ +D T M+G++ P+AE Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRHGVHIDHTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 98 VEEAPKGMLARGSYSIK 114
>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
pdb|1KMT|B Chain B, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
Length = 141
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+A Y P
Sbjct: 39 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 98
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 99 VEEAPKGMLARGSYSIK 115
>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHU|B Chain B, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHV|A Chain A, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|B Chain B, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|C Chain C, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|D Chain D, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|E Chain E, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|F Chain F, Crystal Structure Of Rhogdi E154a,e155a Mutant
Length = 138
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+A Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 98 VEEAPKGMLARGSYSIK 114
>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
pdb|2BXW|B Chain B, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
Length = 141
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+ +D T M+G++ P+AE Y P
Sbjct: 39 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRYGVYIDYTDYMVGSYGPRAEEYEFLTP 98
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 99 VEEAPKGMLARGSYSIK 115
>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant
Length = 138
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+ +D T M+G++ P+AE Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVYIDYTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 98 VEEAPKGMLARGSYSIK 114
>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|B Chain B, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|C Chain C, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
Length = 145
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG KY ++ G+K+D T +G++ P+AE Y P
Sbjct: 44 FVLKEGVEYRIKISFRVNREIVSGXKYIEHTYRKGVKIDKTDYXVGSYGPRAEEYEFLTP 103
Query: 207 EDTTPSGFFARGSYSAK 223
+ P G ARGSYS K
Sbjct: 104 VEEAPKGXLARGSYSIK 120
>pdb|11AS|A Chain A, Asparagine Synthetase Mutant C51a, C315a Complexed With L-
Asparagine
pdb|11AS|B Chain B, Asparagine Synthetase Mutant C51a, C315a Complexed With L-
Asparagine
pdb|12AS|A Chain A, Asparagine Synthetase Mutant C51a, C315a Complexed With L-
Asparagine And Amp
pdb|12AS|B Chain B, Asparagine Synthetase Mutant C51a, C315a Complexed With L-
Asparagine And Amp
Length = 330
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 91 ESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD 131
SL +WK Q LG DF S GE L +K L RPD
Sbjct: 71 HSLAKWKRQTLGQHDF-SAGEGLYTHMKAL--------RPD 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,768,895
Number of Sequences: 62578
Number of extensions: 276086
Number of successful extensions: 466
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 25
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 50 (23.9 bits)