BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027295
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1
PE=1 SV=1
Length = 240
Score = 273 bits (697), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 128/176 (72%), Positives = 151/176 (85%), Gaps = 1/176 (0%)
Query: 48 GMSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFE 107
+SRQMSE+S+ TE+EEDD D K++LGPQYT+KE EKDKDDESLR+WKEQLLGSVD
Sbjct: 39 ALSRQMSESSLCATEEEEDD-DSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVT 97
Query: 108 SVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNI 167
++GE+L+PEV+I SLAI +P RPDIVL VPENG PKG WFTLKEGS+Y+L+F+F V NNI
Sbjct: 98 NIGETLDPEVRIDSLAIISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNI 157
Query: 168 VSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
VSGL+YTNTVWKTG+KVD K MLGTFSPQ EPY +PE+TTPSG FARGSYSA+
Sbjct: 158 VSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSAR 213
>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA
PE=2 SV=1
Length = 204
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 6/167 (3%)
Query: 60 VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
E+EED+ + Q +++E E DKDDESLR++KE LLG V + + P V +
Sbjct: 15 AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVV 72
Query: 120 LSLAIKTPSRP---DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNT 176
L + S P ++ L+ K S F LKEG Y ++ SF+V IVSG+KY
Sbjct: 73 TGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQH 131
Query: 177 VWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
++ G+K+D T M+G++ P+AE Y P + P G ARGSYS K
Sbjct: 132 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK 178
>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1
SV=3
Length = 204
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 6/167 (3%)
Query: 60 VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
E+EED+ + Q +++E E DKDDESLR++KE LLG V + + P V +
Sbjct: 15 AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVV 72
Query: 120 LSLAIKTPSRP---DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNT 176
L + S P ++ L+ K S F LKEG Y ++ SF+V IVSG+KY
Sbjct: 73 TGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQH 131
Query: 177 VWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
++ G+K+D T M+G++ P+AE Y P + P G ARGSYS K
Sbjct: 132 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK 178
>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1
SV=3
Length = 200
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 6/166 (3%)
Query: 62 EDEEDDEDRKIELGP--QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
E+ +DD D K+ P Q +LKE E DKDDESL ++K+ LLG D V + P V +
Sbjct: 11 EEADDDLDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DVPVVADPTVPNVTV 68
Query: 120 LSLAIKTPSRPD-IVLSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTV 177
L++ S P I + + + K F LKEG Y ++ +F+V +IVSGLKY
Sbjct: 69 TRLSLVCDSAPGPITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQHT 128
Query: 178 WKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
++TG++VD M+G++ P+ E Y P + P G ARG+Y K
Sbjct: 129 YRTGMRVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK 174
>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3
Length = 200
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 96/176 (54%), Gaps = 7/176 (3%)
Query: 53 MSENSISVTEDEEDDE-DRKIELGP--QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESV 109
M+E + +E+DDE D K+ P Q +LKE E DKDDESL ++K+ LLG D V
Sbjct: 1 MTEKAPEPHVEEDDDELDGKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DGPVV 58
Query: 110 GESLEPEVKILSLAIKTPSRPD-IVLSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNI 167
+ P V + L + S P I + + + K F LKEG Y ++ +F+V +I
Sbjct: 59 ADPTAPNVTVTRLTLVCESAPGPITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDI 118
Query: 168 VSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
VSGLKY ++TG+KVD M+G++ P+ E Y P + P G ARG+Y K
Sbjct: 119 VSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNK 174
>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3
Length = 204
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 90/165 (54%), Gaps = 2/165 (1%)
Query: 60 VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
E+EED+ + Q +++E E DKDDESLR++KE LLG V + V
Sbjct: 15 AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTR 74
Query: 120 LSLAIKTPSRP-DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
L+L T P ++ L+ K S F LKEG Y ++ SF+V IVSG+KY +
Sbjct: 75 LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133
Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
+ G+K+D T M+G++ P+AE Y P + P G ARGSY+ K
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIK 178
>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia
PE=1 SV=1
Length = 204
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 90/165 (54%), Gaps = 2/165 (1%)
Query: 60 VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
E+EED+ + Q +++E E DKDDESLR++KE LLG V + V
Sbjct: 15 AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVIVTR 74
Query: 120 LSLAIKTPSRP-DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
L+L T P ++ L+ K S F LKEG Y ++ SF+V IVSG+KY +
Sbjct: 75 LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133
Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
+ G+K+D T M+G++ P+AE Y P + P G ARGSY+ K
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIK 178
>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1
SV=3
Length = 204
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 90/165 (54%), Gaps = 2/165 (1%)
Query: 60 VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
E+EED+ + Q +++E E DKDDESLR++KE LLG V + V
Sbjct: 15 AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVIVTR 74
Query: 120 LSLAIKTPSRP-DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
L+L T P ++ L+ K S F LKEG Y ++ SF+V IVSG+KY +
Sbjct: 75 LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133
Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
+ G+K+D T M+G++ P+AE Y P + P G ARGSY+ K
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIK 178
>sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium
discoideum GN=rdiA PE=1 SV=1
Length = 197
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 8/157 (5%)
Query: 75 GPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVL 134
G ++ + ++D +DE+L+R+KE LLG+ + + +K + + I+ RPD +
Sbjct: 17 GKHVSVDQLKQQDAEDEALKRYKESLLGTGVHAPKDDPRKLVIKEMKIQIE--GRPDTIY 74
Query: 135 SVPEN---GRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMML 191
+ K F LKE Y + +F ++++IVSGLK TNTV++ G+KV + K ML
Sbjct: 75 PLDTKELIKEMKTKPFVLKESCHYKITLTFNIQHDIVSGLKQTNTVYRKGIKVSTEKHML 134
Query: 192 GTFSPQAEPYTQELPE---DTTPSGFFARGSYSAKIC 225
G+F+PQA ++ P + PSG ARGSY+AK+
Sbjct: 135 GSFAPQALAHSVTNPRHGWEEAPSGMLARGSYTAKVV 171
>sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1
SV=3
Length = 201
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
PQ +LKE E DKDDESL ++K+ LLG D V + P V + L + S P I +
Sbjct: 28 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 85
Query: 135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
+ + K LKEGS Y ++ F+V +IVSGLKY ++TG+KVD M+G+
Sbjct: 86 DLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGS 145
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
+ P+ E Y P + P G ARG+Y K
Sbjct: 146 YGPRPEEYEFLTPVEEAPKGMLARGTYHNK 175
>sp|Q12434|GDIR_YEAST Rho GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RDI1 PE=1 SV=1
Length = 202
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 10/179 (5%)
Query: 53 MSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVD---FESV 109
M+E S ++ EE+ + + ++ + T+ E D +DESL +WKE L S D E
Sbjct: 1 MAEESTDFSQFEEERNNDQYKVSAKKTVDEYKNLDAEDESLAKWKESLGLSSDVLPLEFP 60
Query: 110 GESLEPEVKILSLAIKTPSRPDIVLSVPENGRPK---GSWFTLKEGSRYSLQFSFQVRNN 166
G+ + V+ + L + T P I + K + +KE S Y L+ F+V++
Sbjct: 61 GDKRKVVVQKIQLLVNTEPNP-ITFDLTNEKTIKELASKRYKIKENSIYKLKIVFKVQHE 119
Query: 167 IVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEP---YTQELPEDTTPSGFFARGSYSA 222
I++GL+Y + K G+ VD LG+++P + Y ELPE PSGF ARG+YSA
Sbjct: 120 IITGLRYVQYIKKAGIAVDKIDDHLGSYAPNTKTKPFYEVELPESEAPSGFLARGNYSA 178
>sp|O14224|GDIR_SCHPO Rho GDP-dissociation inhibitor OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC6F12.06 PE=1 SV=1
Length = 205
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 18/171 (10%)
Query: 62 EDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPE----- 116
ED+ + + LG + +L E + D +DESL++WK L G P
Sbjct: 17 EDDTFEHGPPVSLGEKKSLNEYMKMDAEDESLQKWKASL------GITGTGYSPSNDRRT 70
Query: 117 VKILSLAIKTPSRPDIVLSVP-----ENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGL 171
V IL L++ R + +++ E R KG FT+KEGS + + F+V++ ++SGL
Sbjct: 71 VVILKLSLLVDGRDPVDVNMEDAASVEQIRKKG--FTIKEGSEFKIGVKFRVQHEVISGL 128
Query: 172 KYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSA 222
+Y TV + G VD T M+G++ P PY D P+G ARG Y A
Sbjct: 129 RYVQTVRRRGFVVDKTSTMIGSYGPSETPYDFTSEPDEAPTGMLARGHYEA 179
>sp|Q0II80|GDIR3_BOVIN Rho GDP-dissociation inhibitor 3 OS=Bos taurus GN=ARHGDIG PE=2 SV=1
Length = 225
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 4/144 (2%)
Query: 79 TLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVLSVP 137
+L E + D DDESL ++K LLG V +V SL P V++ L + + P IV+ +
Sbjct: 55 SLLEIQQLDPDDESLVKYKRALLGPV-LPAVDPSL-PNVQVTRLTLISEQAPGPIVMDLT 112
Query: 138 -ENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSP 196
E K F LKEG Y ++ +F+V IVSGLK + ++ GL+VD M+G++ P
Sbjct: 113 GELAALKNQVFVLKEGVDYKVKITFKVNKEIVSGLKCLHHTYRHGLRVDKAVYMVGSYGP 172
Query: 197 QAEPYTQELPEDTTPSGFFARGSY 220
A+ Y P + P G RG+Y
Sbjct: 173 SAQEYEFVTPVEEAPRGALVRGAY 196
>sp|Q20496|GDIR_CAEEL Probable rho GDP-dissociation inhibitor OS=Caenorhabditis elegans
GN=rhi-1 PE=2 SV=1
Length = 191
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 76 PQYTLKEQFEKDKDDESLRRWKEQLLGS----VDFESVGESLEPEVKILSLAIKTPSRPD 131
PQ ++ E DK+DESL+ +K +LLG VD ++ L V+ + L I +
Sbjct: 20 PQKSIDELLNADKEDESLKVYKAKLLGQGTVIVDEKN---PLRVIVRSVELLINGKTAQS 76
Query: 132 IVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMML 191
LS P ++KEGS Y L F+F V+ I SGL Y + V ++G+ V++ K M+
Sbjct: 77 FDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENEKYMM 136
Query: 192 GTFSPQAEPYTQELPEDTTPSGFFARGSY 220
G+++P+ E + P + PSG RG Y
Sbjct: 137 GSYAPKLEIQEYKSPNEEAPSGMMHRGKY 165
>sp|Q99819|GDIR3_HUMAN Rho GDP-dissociation inhibitor 3 OS=Homo sapiens GN=ARHGDIG PE=2
SV=2
Length = 225
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 4/144 (2%)
Query: 79 TLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVLSVP 137
+L E + D DD SL ++K LLG + +V SL P V++ L + + P +V+ +
Sbjct: 55 SLLEIRQLDPDDRSLAKYKRVLLGPLP-PAVDPSL-PNVQVTRLTLLSEQAPGPVVMDLT 112
Query: 138 EN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSP 196
+ K F LKEG Y ++ SF+V IVSGLK + ++ GL+VD T M+G++ P
Sbjct: 113 GDLAVLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGP 172
Query: 197 QAEPYTQELPEDTTPSGFFARGSY 220
A+ Y P + P G RG Y
Sbjct: 173 SAQEYEFVTPVEEAPRGALVRGPY 196
>sp|Q62160|GDIR3_MOUSE Rho GDP-dissociation inhibitor 3 OS=Mus musculus GN=Arhgdig PE=2
SV=1
Length = 225
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 10/159 (6%)
Query: 73 ELGPQY------TLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKT 126
E+ P+Y ++ ++ D D SL ++K+ LLG + + P V++ L + T
Sbjct: 43 EIVPEYQAPGKKSMLAIWQLDPGDVSLVKYKQALLGP--LPPIMDPSLPNVQVTRLTLLT 100
Query: 127 PSRPD-IVLSVPEN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKV 184
P I++ + + K F LKEG Y ++ +F+V IVSGLK + ++ GL+V
Sbjct: 101 EQAPGPIIMDLTGDLDALKNQVFVLKEGIEYKVKITFKVNKEIVSGLKCLHHTYRRGLRV 160
Query: 185 DSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223
D M+G++ P+A+ Y + P G ARG Y +
Sbjct: 161 DKAIFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVVR 199
>sp|P80237|GDIR1_CAVPO Rho GDP-dissociation inhibitor 1 (Fragments) OS=Cavia porcellus
GN=ARHGDIA PE=1 SV=1
Length = 111
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 160 SFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFAR 217
SF+++ + +Y ++ G+K+D T M+G++ P+AE Y P + P G AR
Sbjct: 38 SFKIKIS----FRYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLAR 91
>sp|Q7MMR7|HTPG_VIBVY Chaperone protein HtpG OS=Vibrio vulnificus (strain YJ016) GN=htpG
PE=3 SV=2
Length = 634
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 72 IELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEP 115
E+ P +TL +Q + D+E+ RW E LLG G +P
Sbjct: 577 FEINPNHTLVKQMADEADEEAFGRWVEVLLGQAMLAERGSMEDP 620
>sp|Q8DFM0|HTPG_VIBVU Chaperone protein HtpG OS=Vibrio vulnificus (strain CMCP6) GN=htpG
PE=3 SV=1
Length = 634
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 72 IELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEP 115
E+ P +TL +Q + D+E+ RW E LLG G +P
Sbjct: 577 FEINPNHTLVKQMADETDEEAFGRWVEVLLGQAMLAERGSMEDP 620
>sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic OS=Oryza sativa subsp. japonica
GN=ZEP PE=2 SV=1
Length = 659
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 65 EDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAI 124
EDD+ + +G ++ L D L R +++ L S+G +P SLA+
Sbjct: 517 EDDDALEQAMGGEWYLLPTSSGDSQPIRLIRDEKKSL------SIGSRSDPSNSTASLAL 570
Query: 125 KTP---------SRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVR 164
P + + V +NG G+W T EG RY + +F VR
Sbjct: 571 PLPQISENHATITCKNKAFYVTDNGSEHGTWITDNEGRRYRVPPNFPVR 619
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,360,292
Number of Sequences: 539616
Number of extensions: 4005384
Number of successful extensions: 16862
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 15866
Number of HSP's gapped (non-prelim): 997
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)