Query 027295
Match_columns 225
No_of_seqs 142 out of 284
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3205 Rho GDP-dissociation i 100.0 2.2E-71 4.9E-76 475.0 18.1 175 49-225 1-177 (200)
2 PF02115 Rho_GDI: RHO protein 100.0 3.3E-68 7.3E-73 459.9 12.6 168 56-225 11-179 (200)
3 PF02221 E1_DerP2_DerF2: ML do 64.7 25 0.00054 27.2 6.0 42 146-187 25-67 (134)
4 PF15432 Sec-ASP3: Accessory S 62.3 22 0.00048 29.3 5.5 53 149-209 50-102 (128)
5 cd00917 PG-PI_TP The phosphati 52.4 71 0.0015 25.2 6.8 40 149-188 24-63 (122)
6 PHA00407 phage lambda Rz1-like 46.4 8 0.00017 30.0 0.5 12 92-103 27-38 (84)
7 cd00258 GM2-AP GM2 activator p 44.5 81 0.0017 27.3 6.3 20 204-224 122-141 (162)
8 smart00737 ML Domain involved 39.0 1.4E+02 0.003 22.9 6.4 69 149-223 21-100 (118)
9 PF15043 CNRIP1: CB1 cannabino 38.4 1.5E+02 0.0033 25.7 7.0 50 115-164 5-55 (161)
10 TIGR03711 acc_sec_asp3 accesso 37.4 93 0.002 26.1 5.5 52 149-208 61-112 (135)
11 PF02114 Phosducin: Phosducin; 36.6 36 0.00078 31.0 3.2 52 48-99 52-109 (265)
12 PF05351 GMP_PDE_delta: GMP-PD 32.6 88 0.0019 26.9 4.7 61 155-215 63-128 (157)
13 COG3241 Azurin [Energy product 31.7 69 0.0015 27.2 3.8 45 110-164 95-139 (151)
14 cd00916 Npc2_like Niemann-Pick 27.4 1.6E+02 0.0034 23.4 5.1 40 145-185 22-61 (123)
15 cd00912 ML The ML (MD-2-relate 25.3 1.8E+02 0.0039 22.7 5.0 40 146-186 23-62 (127)
16 KOG4063 Major epididymal secre 24.1 1.2E+02 0.0026 26.3 4.0 41 145-185 48-88 (158)
17 PF10666 Phage_Gp14: Phage pro 23.0 49 0.0011 28.0 1.4 15 86-100 27-41 (140)
18 cd00237 p23 p23 binds heat sho 22.6 1.9E+02 0.0041 22.7 4.7 39 120-162 13-53 (106)
19 smart00700 JHBP Juvenile hormo 21.5 3.2E+02 0.0069 23.4 6.2 19 158-176 60-78 (225)
20 PF11797 DUF3324: Protein of u 20.8 3.9E+02 0.0084 21.7 6.3 64 156-223 43-111 (140)
No 1
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-71 Score=475.01 Aligned_cols=175 Identities=54% Similarity=0.868 Sum_probs=168.7
Q ss_pred ccccccccCCCCCCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCC
Q 027295 49 MSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPS 128 (225)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~yk~~~~ktl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~eg 128 (225)
++|+++.|+.+.++++|++.+.+|++||+|||+||+++|+|||||||||++|||.++ .+++|++|+|+|.+|+|+|+|
T Consensus 1 ms~~~~~s~~~~~~~~e~~~d~~yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~--~~~~~~dp~VvV~~LtLl~~~ 78 (200)
T KOG3205|consen 1 MSEKESVSSDHPTEEDEEDEDENYKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD--VIVDPNDPRVVVLKLTLLSEG 78 (200)
T ss_pred CCccccccccCCCcccccccccccCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC--cccCCCCCeEEEEEEEEEeCC
Confidence 468889999999988888888899999999999999999999999999999999988 578999999999999999999
Q ss_pred CCCeEEeCCCCCCC--CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeecCC
Q 027295 129 RPDIVLSVPENGRP--KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206 (225)
Q Consensus 129 r~di~ldL~~~~~~--k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e~Y~~~~p 206 (225)
||||+|+|++++.+ ++++|+||||+.|+|+|.|+|||||||||||+|+|||.||+|||+.+|||||+|++++|+|.+|
T Consensus 79 r~pi~ldlt~~~~~~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p 158 (200)
T KOG3205|consen 79 RPPIVLDLTGDLSPELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSYGPQAEPYEFVTP 158 (200)
T ss_pred CCCeEEeCCCCccccccCceEEeecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccCCCCCcceeeeCC
Confidence 99999999999887 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccceeeeeeeeeeC
Q 027295 207 EDTTPSGFFARGSYSAKIC 225 (225)
Q Consensus 207 ~EEAPSGmLARG~Y~akS~ 225 (225)
+|||||||||||+|+|+|+
T Consensus 159 ~eeAPsGmlaRG~Ys~~sk 177 (200)
T KOG3205|consen 159 EEEAPSGMLARGSYSAKSK 177 (200)
T ss_pred cccCCccceeecceeeeeE
Confidence 9999999999999999985
No 2
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=100.00 E-value=3.3e-68 Score=459.87 Aligned_cols=168 Identities=46% Similarity=0.770 Sum_probs=130.5
Q ss_pred cCCCCCCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCCCeEEe
Q 027295 56 NSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLS 135 (225)
Q Consensus 56 ~~~~~~~~~~~~~~~~yk~~~~ktl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr~di~ld 135 (225)
.+.+.++|++++.+.+|++|++|||+||++||++|||||||||||||.++ .++++++|+|+|++|+|+|+|||||+|+
T Consensus 11 ~~~~~~~~~~~~~~~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~--~~~d~~~p~V~v~~l~l~~eg~p~i~ld 88 (200)
T PF02115_consen 11 EEQEEEEDEEDEETPGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD--VIGDPNDPKVIVKSLTLVVEGRPPIVLD 88 (200)
T ss_dssp CCCCTSSSSS---S----------HHHHHHTTTT-HHHHHHHHHHH-SS----SS-STS-SEEEEEEEEEETTSS-EEEE
T ss_pred cccccccccccccccccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc--ccCCCCCCeEEEEEEEEEcCCCCCeeee
Confidence 34455667777777899999999999999999999999999999999887 5778899999999999999999999999
Q ss_pred CCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeecCCCCCCCccc
Q 027295 136 VPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGF 214 (225)
Q Consensus 136 L~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e~Y~~~~p~EEAPSGm 214 (225)
|+++.. +++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++|||||+|++++|+|+||+|+|||||
T Consensus 89 l~~~~~~~k~~~f~IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG~ 168 (200)
T PF02115_consen 89 LTGDLEDLKKKPFTIKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSGM 168 (200)
T ss_dssp TTS-GGGGGGSEEEEETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BST
T ss_pred ccCccccccCCcEEccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceeeeccCCCCcceEEeCcCccCCCce
Confidence 998744 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeeeC
Q 027295 215 FARGSYSAKIC 225 (225)
Q Consensus 215 LARG~Y~akS~ 225 (225)
||||+|+|+|+
T Consensus 169 laRG~Y~aks~ 179 (200)
T PF02115_consen 169 LARGSYTAKSK 179 (200)
T ss_dssp TT-EEEEEEEE
T ss_pred eEeeeeeEEEE
Confidence 99999999985
No 3
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=64.69 E-value=25 Score=27.17 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=35.6
Q ss_pred eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecc-eEeccc
Q 027295 146 WFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTG-LKVDST 187 (225)
Q Consensus 146 ~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~G-I~Vdk~ 187 (225)
+-.++-|..+.|.+.|.+.++..++++..-.++-.| ++|--.
T Consensus 25 pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~ 67 (134)
T PF02221_consen 25 PCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFP 67 (134)
T ss_dssp SEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEE
T ss_pred CCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccc
Confidence 566889999999999999999999998877777777 776543
No 4
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=62.25 E-value=22 Score=29.35 Aligned_cols=53 Identities=21% Similarity=0.382 Sum_probs=39.9
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeecCCCCC
Q 027295 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDT 209 (225)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e~Y~~~~p~EE 209 (225)
||.|.+|+|++.+.+..+ +--|++.+.- |+..+.|+..-=+...-+|+.|.+.
T Consensus 50 Lk~G~~Y~l~~~~~~~P~---~svylki~F~-----dr~~e~i~~~i~k~~~~~F~yP~~a 102 (128)
T PF15432_consen 50 LKRGHTYQLKFNIDVVPE---NSVYLKIIFF-----DRQGEEIEEQIIKNDSFEFTYPEEA 102 (128)
T ss_pred ecCCCEEEEEEEEEEccC---CeEEEEEEEE-----ccCCCEeeEEEEecCceEEeCCCCc
Confidence 999999999999999743 5667777765 7777777777666666666666553
No 5
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=52.42 E-value=71 Score=25.23 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=33.0
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecceEecccc
Q 027295 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTK 188 (225)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~ 188 (225)
++.|...+|.+.|....++-+|++-.=.++-.||++-...
T Consensus 24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~ 63 (122)
T cd00917 24 PAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSET 63 (122)
T ss_pred cCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeeccc
Confidence 7789999999999999998888777668888898876443
No 6
>PHA00407 phage lambda Rz1-like protein
Probab=46.41 E-value=8 Score=29.99 Aligned_cols=12 Identities=58% Similarity=1.204 Sum_probs=10.2
Q ss_pred hHHHHHHHhcCC
Q 027295 92 SLRRWKEQLLGS 103 (225)
Q Consensus 92 SL~kwKesLLG~ 103 (225)
-|+|||++|+|.
T Consensus 27 tl~rwkaaLIGl 38 (84)
T PHA00407 27 TLRRWKAALIGL 38 (84)
T ss_pred hhHHHHHHHHHH
Confidence 489999999874
No 7
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=44.53 E-value=81 Score=27.32 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=14.9
Q ss_pred cCCCCCCCccceeeeeeeeee
Q 027295 204 ELPEDTTPSGFFARGSYSAKI 224 (225)
Q Consensus 204 ~~p~EEAPSGmLARG~Y~akS 224 (225)
..|.=+-| .||.+|+|.++.
T Consensus 122 ~lP~~~LP-s~l~~G~Y~i~~ 141 (162)
T cd00258 122 TLPNVDLP-SWLTNGNYRITG 141 (162)
T ss_pred ecccccCC-CccCCCcEEEEE
Confidence 45555567 499999999874
No 8
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=39.04 E-value=1.4e+02 Score=22.85 Aligned_cols=69 Identities=28% Similarity=0.509 Sum_probs=39.1
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecc---eEeccccc----cccccCCCC--CC--eeecCCCCCCCccceee
Q 027295 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTG---LKVDSTKM----MLGTFSPQA--EP--YTQELPEDTTPSGFFAR 217 (225)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~G---I~Vdk~~~----MlGSY~P~~--e~--Y~~~~p~EEAPSGmLAR 217 (225)
++-|...+|.+.|...+++-+ | ++.+..+.| |++-.... .+|..=|-. +. |...++ .|+ ++-+
T Consensus 21 ~~~g~~~~i~i~f~~~~~~~~-~-~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G~~~~~~~~~~---v~~-~~P~ 94 (118)
T smart00737 21 PVRGKTLTISISFTLNEDISK-L-KVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKGETVNYTNSLT---VPG-IFPP 94 (118)
T ss_pred CCCCCEEEEEEEEEEcccceE-E-EEEEEEEECCEEEeccCCCCCccccCCCCCCCCCCeeEEEEEeeE---ccc-cCCC
Confidence 378899999999999888755 5 455554444 55543322 124334532 23 444333 222 4446
Q ss_pred eeeeee
Q 027295 218 GSYSAK 223 (225)
Q Consensus 218 G~Y~ak 223 (225)
|+|+++
T Consensus 95 ~~~~v~ 100 (118)
T smart00737 95 GKYTVK 100 (118)
T ss_pred eEEEEE
Confidence 788765
No 9
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=38.44 E-value=1.5e+02 Score=25.71 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=33.7
Q ss_pred CcEEEEEEEEEcC-CCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEe
Q 027295 115 PEVKILSLAIKTP-SRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVR 164 (225)
Q Consensus 115 P~V~I~~L~L~~e-gr~di~ldL~~~~~~k~~~F~IKEGs~Y~iki~FkVq 164 (225)
|..+-.+|+|..+ +..|+-+.+++.-=-+...++|-=|++|+|.|.|+=-
T Consensus 5 ~~~f~vslslk~~pn~~PVffKvDG~RF~q~RTiKl~tdskYkv~V~~kP~ 55 (161)
T PF15043_consen 5 PGLFRVSLSLKIQPNDGPVFFKVDGQRFGQNRTIKLLTDSKYKVDVTIKPP 55 (161)
T ss_pred CceEEEEEEEEeCCCCCcEEEEecccccCCceEEEEecCCEEEEEEEEcCC
Confidence 4444456666653 4446888875332225678888899999999999853
No 10
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=37.40 E-value=93 Score=26.13 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=34.5
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeecCCCC
Q 027295 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPED 208 (225)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e~Y~~~~p~E 208 (225)
||.|.+|+|.+.+.+.. .|--|++.+.= |+..+-+++.-=+...-+|..|.|
T Consensus 61 Lk~g~~Y~i~~n~~~~P---~~s~~~ki~F~-----dr~~~ei~~~i~~~~~~~F~yP~~ 112 (135)
T TIGR03711 61 LKRGQTYKLSLNADASP---EGSVYLKITFF-----DRQGEEIGTEIEKDDSIIFIYPDE 112 (135)
T ss_pred EcCCCEEEEEEeeeeCC---CceEEEEEEEe-----ccCCceeceEEEecCceEEECCCc
Confidence 99999999999998753 35556666642 555556666555555555555544
No 11
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=36.62 E-value=36 Score=31.02 Aligned_cols=52 Identities=27% Similarity=0.449 Sum_probs=21.0
Q ss_pred CccccccccCCCC---CCccccccccCccCCcccCHHHHHhcC--C-cchhHHHHHHH
Q 027295 48 GMSRQMSENSISV---TEDEEDDEDRKIELGPQYTLKEQFEKD--K-DDESLRRWKEQ 99 (225)
Q Consensus 48 ~~~~~~~~~~~~~---~~~~~~~~~~~yk~~~~ktl~E~~~lD--~-eDESL~kwKes 99 (225)
.+.++++-++-.. +.+..++.+..=++..+.|++|+-.++ . ||+-|++|+++
T Consensus 52 ~li~k~s~t~~s~l~e~~~~~~~k~~~e~~~~~~~~~e~e~~~~d~eDeefL~~yR~q 109 (265)
T PF02114_consen 52 RLIKKLSSTCRSHLDEEEEKQDQKDSEEKLSEKMSLDELEELEDDEEDEEFLEQYREQ 109 (265)
T ss_dssp S-S-SS-----------SSSS--GGGSS----SS-HHHHHHHCC----HHHHHHHHHH
T ss_pred HHHhhccccccccccccccccchhhhhhhhcccccHhHHhhhhcccccHHHHHHHHHH
Confidence 4666766644322 222222222333456688999887764 3 45789999886
No 12
>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3.1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.
Probab=32.56 E-value=88 Score=26.92 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=44.4
Q ss_pred EEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCC---CeeecCCC--CCCCccce
Q 027295 155 YSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAE---PYTQELPE--DTTPSGFF 215 (225)
Q Consensus 155 Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e---~Y~~~~p~--EEAPSGmL 215 (225)
-.-+|.|.|-.++|.++|-+|.++=+|-.+..-..-.|=--|++. .+.|.+|+ +.-|.-|+
T Consensus 63 V~~~i~Fsvg~~pv~nFRmierhyF~~~llk~~dF~FGFcIP~S~NTwE~iye~p~l~~~l~~~mi 128 (157)
T PF05351_consen 63 VGREIEFSVGDEPVNNFRMIERHYFRDQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMI 128 (157)
T ss_dssp EEEEEEEEE-SS-ECCEEEEEEEEETTEEEEEEEEEEEEE-TTCEEEEEEEEEB--CSCCHHHHHH
T ss_pred heEEEEEEECceeccccEeeEeeeecCceeeEEEeeeeeEcCCCccceeEEEEcCCCCchhHHHHH
Confidence 445799999889999999999999999999999998998889975 35666663 34444333
No 13
>COG3241 Azurin [Energy production and conversion]
Probab=31.70 E-value=69 Score=27.18 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=28.2
Q ss_pred CCCCCCcEEEEEEEEEcCCCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEe
Q 027295 110 GESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVR 164 (225)
Q Consensus 110 ~~~~~P~V~I~~L~L~~egr~di~ldL~~~~~~k~~~F~IKEGs~Y~iki~FkVq 164 (225)
..|+||+|+-.---|--..+.-|+||. -+|++|.+|.+-.+|-=+
T Consensus 95 vkpdD~RViAHTklIGgGE~~S~Tfd~----------~kL~~g~~Y~FfCtFPGH 139 (151)
T COG3241 95 VKPDDARVIAHTKLIGGGEETSLTFDP----------AKLADGVEYKFFCTFPGH 139 (151)
T ss_pred CCCCCcceEEEeeeecCCccceEecCH----------HHhcCCceEEEEEecCCc
Confidence 357888886543322222233365553 248999999999998644
No 14
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=27.40 E-value=1.6e+02 Score=23.43 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=31.2
Q ss_pred ceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEec
Q 027295 145 SWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVD 185 (225)
Q Consensus 145 ~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vd 185 (225)
.|=+|+-|..++|.|.|.-+.+ +..|+-.-+..-.||++-
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~-~~~~~~~v~~~~~gv~ip 61 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFD-STSLKTEVHAILLGVPVP 61 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcc-cceeEEEEEEEECCEEec
Confidence 5778999999999999966555 577777666677787754
No 15
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=25.29 E-value=1.8e+02 Score=22.74 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.8
Q ss_pred eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEecc
Q 027295 146 WFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDS 186 (225)
Q Consensus 146 ~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk 186 (225)
+=.++-|..++|.+.|..+.++ ..|+-.=.++..||++-.
T Consensus 23 pC~~~~g~~~~i~~~f~~~~~~-~~~~~~v~~~~~gi~~p~ 62 (127)
T cd00912 23 PCPDHRGGNYNLSVTGTLREDI-KSLYVDLALMSQGIKVLN 62 (127)
T ss_pred CCcccCCCeEEEEEEEEECccc-cEEEEEEEEEECCEEecc
Confidence 5568889999999999887775 555666667778987654
No 16
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=24.10 E-value=1.2e+02 Score=26.25 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=31.7
Q ss_pred ceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEec
Q 027295 145 SWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVD 185 (225)
Q Consensus 145 ~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vd 185 (225)
.+=.||-|.+++|.|.|++.++.-.=..-+|..-=.||+|.
T Consensus 48 ~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vP 88 (158)
T KOG4063|consen 48 TPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVP 88 (158)
T ss_pred CceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeec
Confidence 47889999999999999999887666555665555557763
No 17
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=22.98 E-value=49 Score=27.95 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=12.0
Q ss_pred cCCcchhHHHHHHHh
Q 027295 86 KDKDDESLRRWKEQL 100 (225)
Q Consensus 86 lD~eDESL~kwKesL 100 (225)
.--+|||+|||-++-
T Consensus 27 V~~~DE~~rk~~e~~ 41 (140)
T PF10666_consen 27 VSLDDEMRRKWIEAD 41 (140)
T ss_pred eecChHHHHHHHHHH
Confidence 345899999998875
No 18
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=22.56 E-value=1.9e+02 Score=22.69 Aligned_cols=39 Identities=5% Similarity=0.080 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCCeEEeCCCCCCCCCceEEec--cCCeEEEEEEEE
Q 027295 120 LSLAIKTPSRPDIVLSVPENGRPKGSWFTLK--EGSRYSLQFSFQ 162 (225)
Q Consensus 120 ~~L~L~~egr~di~ldL~~~~~~k~~~F~IK--EGs~Y~iki~Fk 162 (225)
.-|+|.+++..++.++|+. ....|..+ +|..|.+.|.|.
T Consensus 13 V~ltI~v~d~~d~~v~l~~----~~l~f~~~~~~g~~y~~~l~l~ 53 (106)
T cd00237 13 VFIEFCVEDSKDVKVDFEK----SKLTFSCLNGDNVKIYNEIELY 53 (106)
T ss_pred EEEEEEeCCCCCcEEEEec----CEEEEEEECCCCcEEEEEEEee
Confidence 4456666666667777742 34455554 567788777775
No 19
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=21.54 E-value=3.2e+02 Score=23.37 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=10.2
Q ss_pred EEEEEEeeeeeecceeEEE
Q 027295 158 QFSFQVRNNIVSGLKYTNT 176 (225)
Q Consensus 158 ki~FkVq~eIVsGLkY~q~ 176 (225)
.+++.+.+-.+.||+-.++
T Consensus 60 ~~~~~~~n~~i~Gl~~~~i 78 (225)
T smart00700 60 GLRLTFKNVKIYGLSNFEI 78 (225)
T ss_pred EEEEEEEEeEEEcCcceEE
Confidence 3444455666777764433
No 20
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=20.82 E-value=3.9e+02 Score=21.67 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=42.6
Q ss_pred EEEEEEEEee---eeeecceeEEEEEecce--EeccccccccccCCCCCCeeecCCCCCCCccceeeeeeeee
Q 027295 156 SLQFSFQVRN---NIVSGLKYTNTVWKTGL--KVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAK 223 (225)
Q Consensus 156 ~iki~FkVq~---eIVsGLkY~q~VkK~GI--~Vdk~~~MlGSY~P~~e~Y~~~~p~EEAPSGmLARG~Y~ak 223 (225)
+-.|..+++| .+++.|+..-.|+++|= .+-+.+..-.+.+|++. +.|..++..- -|.=|+|+++
T Consensus 43 ~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~-f~~~i~~~~~---~lk~G~Y~l~ 111 (140)
T PF11797_consen 43 RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSN-FNFPIPLGGK---KLKPGKYTLK 111 (140)
T ss_pred eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCe-EEeEecCCCc---CccCCEEEEE
Confidence 4445555554 48899999999988883 56666666679999965 4445554321 4555888876
Done!