Query 027295
Match_columns 225
No_of_seqs 142 out of 284
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 12:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1doa_B RHO GDI 1, protein (GDP 100.0 2.7E-68 9.3E-73 464.2 14.8 163 61-225 31-195 (219)
2 1ds6_B RHO GDP-dissociation in 100.0 1.3E-67 4.6E-72 448.7 12.8 154 70-225 1-156 (180)
3 1kmt_A RHO GDP-dissociation in 100.0 1.7E-49 5.8E-54 326.3 11.5 114 112-225 2-117 (141)
4 2ag4_A GM2-AP, ganglioside GM2 45.9 59 0.002 26.0 6.8 21 203-224 123-143 (164)
5 4goj_C Protein UNC-119 homolog 34.4 43 0.0015 29.4 4.5 92 115-206 84-197 (240)
6 3nkg_A Uncharacterized protein 31.6 23 0.0008 29.7 2.3 38 129-166 4-43 (174)
7 2r5o_A Putative ATP binding co 28.1 2.1E+02 0.0071 22.7 7.4 89 114-223 45-142 (188)
8 1xwv_A DER F II; beta sheets, 28.0 1E+02 0.0035 23.5 5.3 40 144-184 24-63 (129)
9 3t5g_B Retinal ROD rhodopsin-s 27.3 57 0.0019 26.9 3.8 54 154-208 60-116 (152)
10 2trc_P Phosducin, MEKA, PP33; 26.2 49 0.0017 27.1 3.3 27 74-100 55-84 (217)
11 3gqq_A Protein UNC-119 homolog 24.7 82 0.0028 26.9 4.5 51 156-206 99-152 (195)
12 1nep_A EPV20, BNPC2, epididyma 24.3 1.6E+02 0.0054 22.3 5.8 40 144-184 25-64 (130)
13 2bn8_A CEDA, cell division act 20.6 55 0.0019 24.3 2.3 38 185-222 13-52 (87)
14 1eqk_A Oryzacystatin-I; alpha 20.1 1.4E+02 0.0047 21.6 4.4 28 151-178 38-65 (102)
No 1
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Probab=100.00 E-value=2.7e-68 Score=464.16 Aligned_cols=163 Identities=37% Similarity=0.625 Sum_probs=152.2
Q ss_pred CCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCC-CeEEeCCCC
Q 027295 61 TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLSVPEN 139 (225)
Q Consensus 61 ~~~~~~~~~~~yk~~~~ktl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr~-di~ldL~~~ 139 (225)
.|+++++.+.+|++|++|||+||++||+||||||||||||||.++ .+.++++|+|+|++|+|+|+||| +|+|+|+++
T Consensus 31 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~~DESL~kwKesLlg~~~--~~~d~~~P~V~i~~l~l~~~grp~pi~ldl~~~ 108 (219)
T 1doa_B 31 AENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA--VSADPNVPNVVVTRLTLVCSTAPGPLELDLTGD 108 (219)
T ss_dssp SSSSSCCCSCCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHHCCCC--CCCCSSCCSBCCCEEEEECSSCSSCCEEECSSC
T ss_pred ccccccccccCcccCCccCHHHHHhhCcchhHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEeCCCC
Confidence 445556677899999999999999999999999999999999876 46788999999999999999995 499999877
Q ss_pred CC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeecCCCCCCCccceeee
Q 027295 140 GR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARG 218 (225)
Q Consensus 140 ~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e~Y~~~~p~EEAPSGmLARG 218 (225)
.. +|+.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||
T Consensus 109 ~~~lk~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG 188 (219)
T 1doa_B 109 LESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARG 188 (219)
T ss_dssp CGGGGGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCTTSCCS
T ss_pred hhhhcCCCEEecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcceeeeccCCCCCcccccCCCccCCccceeee
Confidence 44 39999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeC
Q 027295 219 SYSAKIC 225 (225)
Q Consensus 219 ~Y~akS~ 225 (225)
+|+|+|+
T Consensus 189 ~Y~akSk 195 (219)
T 1doa_B 189 SYNIKSR 195 (219)
T ss_dssp EEEEEEE
T ss_pred eeeeeEE
Confidence 9999984
No 2
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A
Probab=100.00 E-value=1.3e-67 Score=448.73 Aligned_cols=154 Identities=37% Similarity=0.599 Sum_probs=146.5
Q ss_pred cCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCC-CCeEEeCCCCCC-CCCceE
Q 027295 70 RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSR-PDIVLSVPENGR-PKGSWF 147 (225)
Q Consensus 70 ~~yk~~~~ktl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr-~di~ldL~~~~~-~k~~~F 147 (225)
++|++|++|||+||++||+||||||||||||||.++ ++++|++|+|+|++|+|+++|| +||+++|+++.. +++.+|
T Consensus 1 ~~yk~~~~ksl~e~~~~D~~DESL~k~K~~Llg~~~--~~~~~~~p~v~i~~l~l~~~~~~~pi~~dl~~~~~~~k~~~f 78 (180)
T 1ds6_B 1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI 78 (180)
T ss_dssp CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred CCcCcCCccCHHHHHhhCcchHHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEECCCChhhccCCCE
Confidence 369999999999999999999999999999999876 5778899999999999999999 889999988743 389999
Q ss_pred EeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeecCCCCCCCccceeeeeeeeeeC
Q 027295 148 TLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC 225 (225)
Q Consensus 148 ~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e~Y~~~~p~EEAPSGmLARG~Y~akS~ 225 (225)
+|||||.|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||+|+|+|+
T Consensus 79 ~iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~sk 156 (180)
T 1ds6_B 79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSF 156 (180)
T ss_dssp EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred EecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=100.00 E-value=1.7e-49 Score=326.34 Aligned_cols=114 Identities=36% Similarity=0.653 Sum_probs=108.1
Q ss_pred CCCCcEEEEEEEEEcCCCC-CeEEeCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccc
Q 027295 112 SLEPEVKILSLAIKTPSRP-DIVLSVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKM 189 (225)
Q Consensus 112 ~~~P~V~I~~L~L~~egr~-di~ldL~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~ 189 (225)
|++|+|+|++|+|+++||| ||+|||+++.. +|+.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++
T Consensus 2 p~~p~v~i~~l~l~~~~~~~pi~~~l~~~~~~~k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~ 81 (141)
T 1kmt_A 2 AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY 81 (141)
T ss_dssp CBCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhccCceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcceE
Confidence 4678999999999999976 69999997643 499999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCeeecCCCCCCCccceeeeeeeeeeC
Q 027295 190 MLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKIC 225 (225)
Q Consensus 190 MlGSY~P~~e~Y~~~~p~EEAPSGmLARG~Y~akS~ 225 (225)
|||||+|++++|+|+||+|||||||||||+|+|+|+
T Consensus 82 mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~ 117 (141)
T 1kmt_A 82 MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSR 117 (141)
T ss_dssp EEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred eeeccCCCCCcceecCCCccCCceeEEeeeeeeeEE
Confidence 999999999999999999999999999999999984
No 4
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=45.91 E-value=59 Score=26.03 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=17.4
Q ss_pred ecCCCCCCCccceeeeeeeeee
Q 027295 203 QELPEDTTPSGFFARGSYSAKI 224 (225)
Q Consensus 203 ~~~p~EEAPSGmLARG~Y~akS 224 (225)
|.+|..+.|+ +|..|.|+++.
T Consensus 123 ~~lp~~~lP~-~l~~G~Y~v~~ 143 (164)
T 2ag4_A 123 FVVPDLELPS-WLTTGNYRIES 143 (164)
T ss_dssp EEECCCCCCT-TCSSEEEEEEE
T ss_pred eecCcccccC-ccCCceEEEEE
Confidence 6677778998 99999999863
No 5
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=34.37 E-value=43 Score=29.44 Aligned_cols=92 Identities=12% Similarity=0.256 Sum_probs=60.8
Q ss_pred CcEEEEEEEEEcCCCCCeEEeCCCCCCCCC-----ceEEeccC--CeEEEE------------EEEEEeeeeeecceeEE
Q 027295 115 PEVKILSLAIKTPSRPDIVLSVPENGRPKG-----SWFTLKEG--SRYSLQ------------FSFQVRNNIVSGLKYTN 175 (225)
Q Consensus 115 P~V~I~~L~L~~egr~di~ldL~~~~~~k~-----~~F~IKEG--s~Y~ik------------i~FkVq~eIVsGLkY~q 175 (225)
-++.+.+|.|---+-..+-+.+..+..... ..+---.| +.|++. |.|.|-.++|.++|-+|
T Consensus 84 y~I~F~~F~IRD~etg~vlFei~kp~~~~~~~~~~~~~d~~agR~VrY~F~p~FLklktVga~i~Fsvgdkpv~nFRmiE 163 (240)
T 4goj_C 84 YKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIE 163 (240)
T ss_dssp TCCEEEEEEEEETTTCCEEEEEEC------------------CCEEEEEECGGGGGCSEEEEEEEEECCSSCEEEEEEEE
T ss_pred cCcceeEEEEecCCCCeEEEEecCCCccccccccccccCcccCceEEEecCHHHhcccceeeEEEEeeCceehhcceeee
Confidence 367788888875444444444432211000 01111123 457665 99999989999999999
Q ss_pred EEEecceEeccccccccccCCCCC---CeeecCC
Q 027295 176 TVWKTGLKVDSTKMMLGTFSPQAE---PYTQELP 206 (225)
Q Consensus 176 ~VkK~GI~Vdk~~~MlGSY~P~~e---~Y~~~~p 206 (225)
.++=+|.-+..-.+-.|=-.|++. .+.|.+|
T Consensus 164 RhyFrd~lLksfDFeFGFcIPnS~NTWE~IyE~p 197 (240)
T 4goj_C 164 RHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFP 197 (240)
T ss_dssp EEEETTEEEEEEEEEEEEECTTCEEEEEEEEECC
T ss_pred hhhhcccchheeccccceeccCCcccceeEEecC
Confidence 999999999999999999899975 4666666
No 6
>3nkg_A Uncharacterized protein GEBA250068378; GEBA target, BATA-fold, structural genomics, PSI-2, protein initiative; 2.00A {Sulfurospirillum deleyianum}
Probab=31.62 E-value=23 Score=29.68 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCCeEEeC--CCCCCCCCceEEeccCCeEEEEEEEEEeee
Q 027295 129 RPDIVLSV--PENGRPKGSWFTLKEGSRYSLQFSFQVRNN 166 (225)
Q Consensus 129 r~di~ldL--~~~~~~k~~~F~IKEGs~Y~iki~FkVq~e 166 (225)
..+|.+++ ...++.-...|.|.|--.|.+.+.|.|+.+
T Consensus 4 ~~pi~~pidlsqagsv~e~e~~i~e~~~y~l~l~F~v~dr 43 (174)
T 3nkg_A 4 PNPISIPIDLSQAGSVVEKEVKIEESWSYHLILQFAVHDR 43 (174)
T ss_dssp CCCEEEEECTTSTTEEEEEEEEECSSEEEEEEEEECCCCT
T ss_pred CCceeeecChhhCcceeeeeeecccceeeeEEEEEEEccC
Confidence 34566555 456666778999999999999999999865
No 7
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=28.09 E-value=2.1e+02 Score=22.71 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=50.5
Q ss_pred CCcEEEEEEEEEcCCCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEe-cceEecccccccc
Q 027295 114 EPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWK-TGLKVDSTKMMLG 192 (225)
Q Consensus 114 ~P~V~I~~L~L~~egr~di~ldL~~~~~~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK-~GI~Vdk~~~MlG 192 (225)
+..+.|.++.|.-.+..++ + ++.-|..++|+|.|++..+ +..+.+-=.++. .|..|--..-+.-
T Consensus 45 sg~a~I~~v~l~d~~G~~~--~------------~~~~Ge~v~l~i~~~~~~~-i~~~v~G~~Ik~~~G~~I~g~nT~~~ 109 (188)
T 2r5o_A 45 QGGAKIIDYHIQSAGVDFP--P------------SLTGNQQTDFLMKVVFEYD-FDCVVPGILIKTLDGLFLYGTNSFLA 109 (188)
T ss_dssp CCSEEEEEEEEEETTEESC--S------------SEETTCEEEEEEEEEESSC-EEEEEEEEEEEETTCCEEEEEEHHHH
T ss_pred CCcEEEEEEEEEECCCCEe--e------------EEeCCCEEEEEEEEEECCc-CCccEEEEEEECCCCCEEEecCcccc
Confidence 4668899998875432211 1 1556788889999999754 344544334443 4877755543332
Q ss_pred ccCC-----CCCC---eeecCCCCCCCccceeeeeeeee
Q 027295 193 TFSP-----QAEP---YTQELPEDTTPSGFFARGSYSAK 223 (225)
Q Consensus 193 SY~P-----~~e~---Y~~~~p~EEAPSGmLARG~Y~ak 223 (225)
...+ ++.. ..|.|+ . .|.-|.|.+.
T Consensus 110 ~~~~~~~~~~~G~~~~v~f~f~---l---~L~~G~Y~ls 142 (188)
T 2r5o_A 110 SEGRENISVSRGDVRVFKFSLP---V---DLNSGDYLLS 142 (188)
T ss_dssp TTTCCCEEECTTCEEEEEEEEE---C---CBCSEEEEEE
T ss_pred cccccccccCCCCEEEEEEEEe---c---ccCCCeEEEE
Confidence 1222 2222 234444 2 4888999864
No 8
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=27.97 E-value=1e+02 Score=23.46 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=35.0
Q ss_pred CceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEe
Q 027295 144 GSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKV 184 (225)
Q Consensus 144 ~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~V 184 (225)
..|=.|+-|..++|.|.|.-+.+ ++.|+-.=.++=.|+.+
T Consensus 24 ~~pC~l~rG~~~~i~~~f~~~~~-~~~l~~~v~~~~~g~~i 63 (129)
T 1xwv_A 24 SDPCIIHRGKPFTLEALFDANQN-TKTAKIEIKASLDGLEI 63 (129)
T ss_dssp TSCEEEETTSEEEEEEEEECCSC-BSCCEEEEEEEETTEEE
T ss_pred CCCCEEeCCCeEEEEEEEECCCc-cceEEEEEEEEEcCEEe
Confidence 45788999999999999998877 78999888888889887
No 9
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=27.28 E-value=57 Score=26.89 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=44.1
Q ss_pred eEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCC---CeeecCCCC
Q 027295 154 RYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAE---PYTQELPED 208 (225)
Q Consensus 154 ~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e---~Y~~~~p~E 208 (225)
.-.-+|.|.| .++|.++|-+|.++=+|-.+..-.+-.|=-.|++. .+.|.+|++
T Consensus 60 ~V~~~i~Fs~-~epi~nFRmierhyf~~~lle~~dF~FGF~IP~StNTWe~i~E~~~~ 116 (152)
T 3t5g_B 60 AVSRELNFSS-TEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPE 116 (152)
T ss_dssp EEEEEEEEEE-SSCEEEEEEEEEEEETTEEEEEEEEEEEEECTTEEEEEEEEEEBCCG
T ss_pred hheEEEEEec-cccccccEEEEEEEEcCceeeeEeeeeeeEcCCCCcccceEEEcCCc
Confidence 3455889999 79999999999999999999999998998889865 355555543
No 10
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=26.16 E-value=49 Score=27.12 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=20.6
Q ss_pred CCcccCHHHHHhcC---CcchhHHHHHHHh
Q 027295 74 LGPQYTLKEQFEKD---KDDESLRRWKEQL 100 (225)
Q Consensus 74 ~~~~ktl~E~~~lD---~eDESL~kwKesL 100 (225)
...++|++|+-.++ .+|+-|++|.++=
T Consensus 55 ~~~~~~~~e~~~~~~d~~d~~fl~~~r~~R 84 (217)
T 2trc_P 55 MSRKMSIQEYELIHQDKEDEGCLRKYRRQC 84 (217)
T ss_dssp CCCSSCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred hhccCChhhhhhhccccccHHHHHHHHHHH
Confidence 45689999988776 5677899987663
No 11
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=24.67 E-value=82 Score=26.88 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=43.2
Q ss_pred EEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCC---CeeecCC
Q 027295 156 SLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAE---PYTQELP 206 (225)
Q Consensus 156 ~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~~~MlGSY~P~~e---~Y~~~~p 206 (225)
.-+|.|.|...+|.++|-+|.++=+|--+..-.+-.|=-.|++. ...|.+|
T Consensus 99 ~~~i~Fsvgdkpi~nFRmierhyF~~~llk~~dF~FGFcIP~StNTWE~iye~P 152 (195)
T 3gqq_A 99 GATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFP 152 (195)
T ss_dssp EEEEEEECCSSCBCSEEEEEEEEETTEEEEEEEEECCCBCTTSEEEEEEEEECC
T ss_pred ceEEEEeeCCccccccEEEEEEEeCCceeeEEeeeeeeEcCCCCccceeeeecC
Confidence 45799999877999999999999999999998988888889865 3555655
No 12
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=24.27 E-value=1.6e+02 Score=22.32 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=32.5
Q ss_pred CceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEe
Q 027295 144 GSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKV 184 (225)
Q Consensus 144 ~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~V 184 (225)
..|=+|+-|..++|.|.|.-+.+ +++|+-.=.++=.||++
T Consensus 25 ~~PC~l~rG~~~~i~i~f~~~~~-~~~~~~~v~~~~~gv~v 64 (130)
T 1nep_A 25 TQPCKLHRGQSYSVNVTFTSNTQ-SQSSKAVVHGIVMGIPV 64 (130)
T ss_dssp SSSEEEETTCEEEEEEEEEESSC-BSCCEEEEEEEETTEEE
T ss_pred CCCCEEEcCCeEEEEEEEEcccc-cceEEEEEEEEECCEEe
Confidence 35778999999999999999877 46777766666688877
No 13
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=20.56 E-value=55 Score=24.28 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=20.8
Q ss_pred ccccccccccCCCCCC--eeecCCCCCCCccceeeeeeee
Q 027295 185 DSTKMMLGTFSPQAEP--YTQELPEDTTPSGFFARGSYSA 222 (225)
Q Consensus 185 dk~~~MlGSY~P~~e~--Y~~~~p~EEAPSGmLARG~Y~a 222 (225)
...+..|-||-|+.|+ -++..-.+.----|+.||+|-|
T Consensus 13 rqqnrpvisyvprvepapp~ha~kmd~frdvw~lrgkyva 52 (87)
T 2bn8_A 13 RQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVA 52 (87)
T ss_dssp --------CCCCCCCCBTTBSCBCTTTCTTEEEETTEEEE
T ss_pred HhcCCcceeeccCCCCCCchHhhhcccchhheeeccceEE
Confidence 3444567799999885 3333334444456899999987
No 14
>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2
Probab=20.06 E-value=1.4e+02 Score=21.63 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=18.4
Q ss_pred cCCeEEEEEEEEEeeeeeecceeEEEEE
Q 027295 151 EGSRYSLQFSFQVRNNIVSGLKYTNTVW 178 (225)
Q Consensus 151 EGs~Y~iki~FkVq~eIVsGLkY~q~Vk 178 (225)
.+..|.+.=--+++.++|+|+.|.=++.
T Consensus 38 ~n~~~~~~~Vv~a~~QVVaG~~Y~l~v~ 65 (102)
T 1eqk_A 38 ANSLLEFEKLVSVKQQVVAGTLYYFTIE 65 (102)
T ss_dssp TTCCEEEEEEEEEEEEESSSEEEEEEEE
T ss_pred cCCceEEEEEEEEEEEEeccEEEEEEEE
Confidence 4455555444566777888888876664
Done!