Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>027296
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRAR
RTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEF
KPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASG
TNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVRVSTT

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027296
        (225 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1005716651 - symbol:AT2G43945 species:3702 "Ar...   659  1.1e-64   1
TAIR|locus:2080452 - symbol:AT3G59870 "AT3G59870" species...   628  2.1e-61   1


>TAIR|locus:1005716651 [details] [associations]
            symbol:AT2G43945 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0010207 "photosystem II
            assembly" evidence=RCA] GO:GO:0009570 EMBL:CP002685 IPI:IPI00520843
            RefSeq:NP_850404.1 UniGene:At.46732 ProteinModelPortal:F4IT21
            PRIDE:F4IT21 EnsemblPlants:AT2G43945.1 GeneID:818999
            KEGG:ath:AT2G43945 OMA:QQQGPRS Uniprot:F4IT21
        Length = 289

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 145/229 (63%), Positives = 176/229 (76%)

Query:     1 MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSH--PTQH--- 55
             MS++LP+RLLLPL++ S  +   P  +S   PS F +S NPNF    SSS    +Q    
Sbjct:     1 MSSSLPLRLLLPLTT-SLISPPPPPPDSFHAPSSF-RSKNPNFKRRLSSSSCCSSQSQLF 58

Query:    56 SWRARRTKK-TWLC--GNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGS 112
             S R R   +   +C   +MR  ++ + L  +++++  +  SDED G +IPTQAQ++VEGS
Sbjct:    59 SGRCRSYSRCVTMCLPEHMRNQENTEILTDKDDHIECVLESDEDSGLRIPTQAQAIVEGS 118

Query:   113 GAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNH 172
             G+V VSE KP  DVDY+QELLAIQQQGPR+IGFFGTRNMGFMHQELIEILSYA+VITKNH
Sbjct:   119 GSVAVSELKPAADVDYIQELLAIQQQGPRSIGFFGTRNMGFMHQELIEILSYAMVITKNH 178

Query:   173 IYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVR 221
             IYTSGASGTNAAVIRGALRAERP+LLTVILPQSLKKQPPESQELL+KV+
Sbjct:   179 IYTSGASGTNAAVIRGALRAERPELLTVILPQSLKKQPPESQELLSKVQ 227


>TAIR|locus:2080452 [details] [associations]
            symbol:AT3G59870 "AT3G59870" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0010207 "photosystem II assembly" evidence=RCA] GO:GO:0009570
            EMBL:CP002686 EMBL:AL138647 IPI:IPI00531661 PIR:T47811
            RefSeq:NP_191546.1 UniGene:At.28158 ProteinModelPortal:Q9M1Y7
            STRING:Q9M1Y7 PRIDE:Q9M1Y7 EnsemblPlants:AT3G59870.1 GeneID:825157
            KEGG:ath:AT3G59870 TAIR:At3g59870 InParanoid:Q9M1Y7 OMA:QGPRTIG
            PhylomeDB:Q9M1Y7 ProtClustDB:CLSN2685014 Genevestigator:Q9M1Y7
            Uniprot:Q9M1Y7
        Length = 288

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 141/231 (61%), Positives = 175/231 (75%)

Query:     1 MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQ-HSWRA 59
             MS+ALP++LLLPL++ S     +PF +  D P+ F +  + +    +S S   Q  S R 
Sbjct:     1 MSSALPLKLLLPLTTTSLL--PSPFRS--DNPN-FYRRRSSSSTSCSSQSQSFQLFSVRR 55

Query:    60 RRTKKTW----LC-GNMRKDQD-MDGLRSEEENVIGMFGSDEDV---GTQIPTQAQSVVE 110
             RR++ +     +C     +DQD +D   ++E+NV   F SDED    G +IPTQAQ++VE
Sbjct:    56 RRSRSSSPSIPMCFPEQTRDQDDVDSWVNKEDNVTCRFDSDEDTTTTGLRIPTQAQAIVE 115

Query:   111 GSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170
             G G++ VSE + VPDVDY+QELLAIQQQGPR IGFFGTRNMGFMHQELI+ILSYA+VITK
Sbjct:   116 GPGSLAVSELQRVPDVDYIQELLAIQQQGPRTIGFFGTRNMGFMHQELIQILSYAMVITK 175

Query:   171 NHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVR 221
             NHIYTSGA+GTNAAVIRGALRAERP+LLTVILPQSLKKQPPESQELL+KV+
Sbjct:   176 NHIYTSGAAGTNAAVIRGALRAERPELLTVILPQSLKKQPPESQELLSKVQ 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       225   0.00077  113 3  11 22  0.41    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  164 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.99u 0.15s 20.14t   Elapsed:  00:00:01
  Total cpu time:  19.99u 0.15s 20.14t   Elapsed:  00:00:01
  Start:  Fri May 10 08:52:38 2013   End:  Fri May 10 08:52:39 2013

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