BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027296
         (225 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A9KHY6|DAPA_CLOPH 4-hydroxy-tetrahydrodipicolinate synthase OS=Clostridium
           phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
           GN=dapA PE=3 SV=1
          Length = 294

 Score = 33.9 bits (76), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 107 SVVEGSGAVMVSEFKPVPDVDY--LQELLAIQ-QQGPRAIGFFGT--RNMGFMHQELIEI 161
           ++  G+G  +V+ FK   +V+Y  L EL+  Q   G  +I   GT   +    H+E IE 
Sbjct: 2   AIFTGAGVAIVTPFKENREVNYEKLGELIDFQINNGTDSIIICGTTGESSTLTHEEHIEC 61

Query: 162 LSYALVITKNHIYTSGASGTNA 183
           + +A+  TK  +     +G+N 
Sbjct: 62  IRFAIEYTKKRVPVIAGTGSNC 83


>sp|Q1ZXF1|ECHM_DICDI Probable enoyl-CoA hydratase, mitochondrial OS=Dictyostelium
           discoideum GN=echs1 PE=3 SV=1
          Length = 277

 Score = 30.8 bits (68), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 78  DGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLA 134
           DGL SE  + + +F  D+DVG+ I T ++        +   E   +PD  Y  +LLA
Sbjct: 50  DGLISEINSAVKLFQEDKDVGSIIITGSEKAFAAGADIKEMEKVTLPDA-YNNDLLA 105


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,901,861
Number of Sequences: 539616
Number of extensions: 3359572
Number of successful extensions: 7705
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7703
Number of HSP's gapped (non-prelim): 4
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)