Query 027298
Match_columns 225
No_of_seqs 336 out of 2183
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 99.4 5.9E-12 1.3E-16 116.1 13.0 132 1-157 78-215 (951)
2 KOG0207 Cation transport ATPas 99.4 6.5E-12 1.4E-16 115.9 13.1 133 1-159 3-140 (951)
3 PF00403 HMA: Heavy-metal-asso 99.3 2.4E-11 5.1E-16 78.6 7.3 58 94-152 1-62 (62)
4 PRK10671 copA copper exporting 99.2 3.5E-10 7.6E-15 107.9 16.1 150 1-156 12-164 (834)
5 COG2608 CopZ Copper chaperone 99.1 8.7E-10 1.9E-14 73.2 8.2 64 92-156 3-70 (71)
6 PF00403 HMA: Heavy-metal-asso 99.1 7.7E-10 1.7E-14 71.4 7.2 54 1-55 7-62 (62)
7 KOG1603 Copper chaperone [Inor 99.0 1.5E-09 3.3E-14 72.4 8.1 65 91-156 5-70 (73)
8 COG2608 CopZ Copper chaperone 98.9 4.3E-09 9.4E-14 69.8 7.4 57 1-58 11-69 (71)
9 KOG4656 Copper chaperone for s 98.5 5.3E-07 1.1E-11 70.3 7.7 70 91-161 7-76 (247)
10 KOG1603 Copper chaperone [Inor 98.3 2.4E-06 5.3E-11 56.9 6.5 55 1-57 13-68 (73)
11 KOG4656 Copper chaperone for s 98.1 1.3E-05 2.8E-10 62.7 6.6 58 1-60 15-72 (247)
12 PLN02957 copper, zinc superoxi 98.0 4.1E-05 8.9E-10 62.7 9.3 70 91-161 6-75 (238)
13 PRK10671 copA copper exporting 97.8 5.2E-05 1.1E-09 72.8 7.9 64 91-157 3-67 (834)
14 COG2217 ZntA Cation transport 97.7 8.2E-05 1.8E-09 69.6 7.2 62 92-155 3-69 (713)
15 PLN02957 copper, zinc superoxi 97.4 0.00087 1.9E-08 54.9 8.2 59 1-61 14-72 (238)
16 TIGR00003 copper ion binding p 97.4 0.002 4.4E-08 39.6 8.3 61 92-153 3-67 (68)
17 COG2217 ZntA Cation transport 97.3 0.00058 1.3E-08 64.0 6.4 56 1-58 11-69 (713)
18 TIGR00003 copper ion binding p 96.4 0.024 5.2E-07 34.5 6.8 55 1-56 11-67 (68)
19 PRK11033 zntA zinc/cadmium/mer 95.9 0.029 6.2E-07 53.5 7.4 64 90-155 52-118 (741)
20 PRK11033 zntA zinc/cadmium/mer 94.3 0.12 2.6E-06 49.4 6.7 56 1-57 62-117 (741)
21 TIGR02052 MerP mercuric transp 91.5 2.7 5.8E-05 27.6 8.6 63 92-155 24-90 (92)
22 PRK13748 putative mercuric red 82.0 8 0.00017 35.5 8.3 64 94-158 3-69 (561)
23 TIGR02052 MerP mercuric transp 78.3 16 0.00034 23.8 7.3 56 1-57 32-89 (92)
24 COG1888 Uncharacterized protei 72.6 28 0.00061 23.9 6.9 65 90-155 5-78 (97)
25 COG2177 FtsX Cell division pro 71.8 23 0.00049 30.1 7.5 81 4-124 71-152 (297)
26 PF02162 XYPPX: XYPPX repeat ( 69.6 4.3 9.2E-05 18.0 1.4 13 200-212 3-15 (15)
27 cd00371 HMA Heavy-metal-associ 66.7 18 0.00038 19.3 7.5 53 98-151 6-60 (63)
28 PRK13748 putative mercuric red 58.5 44 0.00095 30.7 7.4 59 1-60 9-68 (561)
29 PF02680 DUF211: Uncharacteriz 58.4 60 0.0013 22.6 7.8 63 90-154 4-75 (95)
30 PF01206 TusA: Sulfurtransfera 56.4 32 0.0007 21.8 4.6 51 94-154 2-55 (70)
31 PRK14054 methionine sulfoxide 55.2 27 0.00059 27.1 4.7 46 4-49 10-76 (172)
32 PF01883 DUF59: Domain of unkn 52.4 28 0.0006 22.3 3.8 32 92-123 35-72 (72)
33 COG1888 Uncharacterized protei 50.8 80 0.0017 21.8 5.9 50 10-60 24-80 (97)
34 PRK10553 assembly protein for 46.4 86 0.0019 21.4 5.5 43 103-145 17-60 (87)
35 COG0841 AcrB Cation/multidrug 45.0 3.4E+02 0.0075 27.4 12.6 124 7-149 63-209 (1009)
36 PRK11018 hypothetical protein; 44.3 86 0.0019 20.6 5.2 53 92-154 8-63 (78)
37 PF08248 Tryp_FSAP: Tryptophyl 43.7 13 0.00027 15.4 0.6 7 198-204 4-10 (12)
38 PRK04435 hypothetical protein; 43.3 1.4E+02 0.003 22.4 8.6 82 19-123 57-143 (147)
39 PF02680 DUF211: Uncharacteriz 42.9 73 0.0016 22.1 4.7 50 9-59 21-77 (95)
40 cd04888 ACT_PheB-BS C-terminal 42.4 87 0.0019 19.7 7.5 61 40-123 13-74 (76)
41 PRK05528 methionine sulfoxide 41.7 68 0.0015 24.5 4.9 46 4-49 8-69 (156)
42 cd03421 SirA_like_N SirA_like_ 40.8 76 0.0016 19.9 4.4 50 95-155 2-54 (67)
43 PF08777 RRM_3: RNA binding mo 37.4 1.5E+02 0.0031 20.9 5.8 56 93-149 2-60 (105)
44 PRK13014 methionine sulfoxide 36.5 55 0.0012 25.8 3.7 46 4-49 15-81 (186)
45 PRK11026 ftsX cell division AB 35.7 2.7E+02 0.0058 23.7 8.2 32 93-124 131-164 (309)
46 PRK00058 methionine sulfoxide 34.9 73 0.0016 25.7 4.3 46 4-49 52-118 (213)
47 PF03927 NapD: NapD protein; 33.8 1.4E+02 0.0031 19.7 6.0 42 104-146 16-58 (79)
48 PF01625 PMSR: Peptide methion 32.7 1.3E+02 0.0029 22.8 5.2 46 4-49 7-73 (155)
49 PF13732 DUF4162: Domain of un 30.4 1.2E+02 0.0026 19.7 4.3 41 112-155 26-68 (84)
50 PF13291 ACT_4: ACT domain; PD 28.6 1.7E+02 0.0036 18.9 4.7 32 91-122 48-79 (80)
51 PF00873 ACR_tran: AcrB/AcrD/A 28.0 2.3E+02 0.005 28.4 7.4 129 7-150 62-211 (1021)
52 PRK14054 methionine sulfoxide 27.9 1.2E+02 0.0025 23.6 4.2 28 102-129 10-37 (172)
53 PF02672 CP12: CP12 domain; I 27.6 17 0.00037 23.8 -0.4 13 212-224 54-68 (71)
54 PF13740 ACT_6: ACT domain; PD 24.9 2E+02 0.0043 18.5 5.1 42 92-133 2-45 (76)
55 TIGR03406 FeS_long_SufT probab 24.0 1.2E+02 0.0026 23.6 3.7 34 92-125 114-153 (174)
56 TIGR02945 SUF_assoc FeS assemb 23.7 2.4E+02 0.0053 19.1 5.3 40 106-150 58-97 (99)
57 PF14437 MafB19-deam: MafB19-l 23.4 2.3E+02 0.0049 21.4 4.9 39 91-130 100-140 (146)
58 PRK10555 aminoglycoside/multid 23.2 7.9E+02 0.017 24.9 11.8 42 105-146 159-208 (1037)
59 KOG3411 40S ribosomal protein 22.5 90 0.002 23.1 2.5 47 100-146 92-139 (143)
60 cd03420 SirA_RHOD_Pry_redox Si 22.1 2.2E+02 0.0048 18.0 4.6 50 95-154 2-54 (69)
61 PRK10553 assembly protein for 21.3 2.8E+02 0.006 18.9 5.7 43 7-49 19-61 (87)
62 PF09580 Spore_YhcN_YlaJ: Spor 20.7 2.5E+02 0.0054 21.3 5.0 32 102-133 74-105 (177)
63 PRK05550 bifunctional methioni 20.5 1.8E+02 0.0039 24.6 4.3 46 4-49 134-200 (283)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.38 E-value=5.9e-12 Score=116.15 Aligned_cols=132 Identities=25% Similarity=0.475 Sum_probs=116.7
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEec--cCCHHHHHHHHHHhcCCceeecCCCCCCCCCCCChhHHhhh
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGK--TADPIKVCERLQKKSGRKVELISPLPKPPPPDADDQEKKEQ 78 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~--~~~~~~i~~~i~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~ 78 (225)
|+|.+|.+.|++.|+.++|+.++.+.+....+.+.++ ..++..+.+.++ ++||.+.+++.....
T Consensus 78 mtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~~i~~~~~~------------- 143 (951)
T KOG0207|consen 78 MTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAELIESVNGN------------- 143 (951)
T ss_pred ceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccceehhcccCC-------------
Confidence 8999999999999999999999999999999999997 368999999999 899999877543221
Q ss_pred hcccccCCCCccEEEEEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEE---eeCCHHHHHHHHHhhCCCcee
Q 027298 79 QKVEKKEEPPAAITVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK---GVVDPVKLVNDVNKKTRKQAS 154 (225)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~---g~~~~~~l~~~l~~k~G~~a~ 154 (225)
. ..++.|.| ||.|.+|..+|+..|.+++||.+.++++.++++.|. ....+.++.+.|. .+|+.+.
T Consensus 144 ---------~-~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie-~~~~~~~ 212 (951)
T KOG0207|consen 144 ---------S-NQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIE-ETGFEAS 212 (951)
T ss_pred ---------C-CCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHH-hhcccce
Confidence 1 14789999 999999999999999999999999999999999988 4578999999997 9999876
Q ss_pred ecc
Q 027298 155 IVK 157 (225)
Q Consensus 155 ~~~ 157 (225)
+..
T Consensus 213 ~~~ 215 (951)
T KOG0207|consen 213 VRP 215 (951)
T ss_pred eee
Confidence 544
No 2
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.38 E-value=6.5e-12 Score=115.91 Aligned_cols=133 Identities=23% Similarity=0.423 Sum_probs=118.2
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEec-cCCHHHHHHHHHHhcCCceeecCCCCCCCCCCCChhHHhhhh
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGK-TADPIKVCERLQKKSGRKVELISPLPKPPPPDADDQEKKEQQ 79 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~-~~~~~~i~~~i~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~ 79 (225)
|+|..|++.|+.+++..+|+.++.+++..+.++|.++ ..+++.+.+.|+ +.||.+.++++...
T Consensus 3 mtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ie-d~gf~~~~~~~~~~--------------- 66 (951)
T KOG0207|consen 3 MTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIE-DMGFEASLLSDSEI--------------- 66 (951)
T ss_pred ccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhh-cccceeeecccCcc---------------
Confidence 8999999999999999999999999999999999997 479999999999 99999998765321
Q ss_pred cccccCCCCccEEEEEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEE---eeCCHHHHHHHHHhhCCCceee
Q 027298 80 KVEKKEEPPAAITVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK---GVVDPVKLVNDVNKKTRKQASI 155 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~---g~~~~~~l~~~l~~k~G~~a~~ 155 (225)
...+-.|.+ ||+|.+|.+.+++.|++..||.++.+.+......+. ....++.+.+.++ +.|+.+.+
T Consensus 67 ---------~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~~ 136 (951)
T KOG0207|consen 67 ---------TASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAEL 136 (951)
T ss_pred ---------ccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCcccee
Confidence 123678999 999999999999999999999999999999999988 3578899999997 99999887
Q ss_pred cccc
Q 027298 156 VKDE 159 (225)
Q Consensus 156 ~~~~ 159 (225)
+...
T Consensus 137 i~~~ 140 (951)
T KOG0207|consen 137 IESV 140 (951)
T ss_pred hhcc
Confidence 6553
No 3
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.27 E-value=2.4e-11 Score=78.56 Aligned_cols=58 Identities=28% Similarity=0.497 Sum_probs=53.1
Q ss_pred EEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEEee---CCHHHHHHHHHhhCCCc
Q 027298 94 VLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGV---VDPVKLVNDVNKKTRKQ 152 (225)
Q Consensus 94 ~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~g~---~~~~~l~~~l~~k~G~~ 152 (225)
+|.| ||+|++|+.+|+++|.+++||.++.+|+.+++++|.+. .++++|.+.|+ ++||.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 4789 99999999999999999999999999999999999954 45699999997 99984
No 4
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.22 E-value=3.5e-10 Score=107.93 Aligned_cols=150 Identities=21% Similarity=0.367 Sum_probs=107.8
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEeccCCHHHHHHHHHHhcCCceeecCCCCCCCCCCC--ChhHHhhh
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVELISPLPKPPPPDA--DDQEKKEQ 78 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~~g~~~~~~s~~~~~~~~~~--~~~~~~~~ 78 (225)
|+|.+|+.+|+++|++++||..+.+++. +..+.. ..+...+.+.++ ++||.+.+.++...+..... .++.....
T Consensus 12 mtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~-~~~~~~i~~~i~-~~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (834)
T PRK10671 12 LSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTG-TASAEALIETIK-QAGYDASVSHPKAKPLTESSIPSEALTAAS 87 (834)
T ss_pred cccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEe-cCCHHHHHHHHH-hcCCcccccccccccccccccCchhhhhhh
Confidence 8999999999999999999999999994 555555 468899999999 89999987542211100000 00000000
Q ss_pred hcccccCCCCccEEEEEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEEeeCCHHHHHHHHHhhCCCceeec
Q 027298 79 QKVEKKEEPPAAITVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIV 156 (225)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~g~~~~~~l~~~l~~k~G~~a~~~ 156 (225)
......+......+.+.+ ||+|..|+..+++.+..++||..+.+++..+++.+.+..++..+...++ .+||.+.+.
T Consensus 88 -~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~-~~Gy~a~~~ 164 (834)
T PRK10671 88 -EELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVE-KAGYGAEAI 164 (834)
T ss_pred -hhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHH-hcCCCcccc
Confidence 000000001123577889 9999999999999999999999999999988888875567888888886 899986544
No 5
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.08 E-value=8.7e-10 Score=73.21 Aligned_cols=64 Identities=22% Similarity=0.475 Sum_probs=57.4
Q ss_pred EEEEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEE--e-eCCHHHHHHHHHhhCCCceeec
Q 027298 92 TVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK--G-VVDPVKLVNDVNKKTRKQASIV 156 (225)
Q Consensus 92 ~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~--g-~~~~~~l~~~l~~k~G~~a~~~ 156 (225)
+..|+| ||+|.+|+..|+++|..++||.++.+++..+++.|. + ..+.++|.++|. .+||.+..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeeec
Confidence 578999 999999999999999999999999999999777776 4 579999999997 999987643
No 6
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.06 E-value=7.7e-10 Score=71.40 Aligned_cols=54 Identities=33% Similarity=0.578 Sum_probs=50.2
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEecc--CCHHHHHHHHHHhcCCc
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKT--ADPIKVCERLQKKSGRK 55 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~--~~~~~i~~~i~~~~g~~ 55 (225)
|+|++|+++|+++|.+++||.++.+|+.++++.|.++. +++..|.++|+ ++||+
T Consensus 7 m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 7 MTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp TTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred cccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 89999999999999999999999999999999999962 56799999999 89984
No 7
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.04 E-value=1.5e-09 Score=72.44 Aligned_cols=65 Identities=46% Similarity=0.796 Sum_probs=59.2
Q ss_pred EEEEEEEeeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEEeeCCHHHHHHHHHhhCC-Cceeec
Q 027298 91 ITVVLNVRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTR-KQASIV 156 (225)
Q Consensus 91 ~~~~l~vgm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~g~~~~~~l~~~l~~k~G-~~a~~~ 156 (225)
...++++.|+|.+|..+|.+.|+.+.||.++.+|...++++|.|.+++..|++.|+ +.| ..+.++
T Consensus 5 ~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~-k~~~k~~~~~ 70 (73)
T KOG1603|consen 5 KTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLK-KTGGKRAELW 70 (73)
T ss_pred cEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHH-hcCCCceEEe
Confidence 46788889999999999999999999999999999999999999999999999997 666 655554
No 8
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.95 E-value=4.3e-09 Score=69.84 Aligned_cols=57 Identities=28% Similarity=0.493 Sum_probs=53.0
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEecc--CCHHHHHHHHHHhcCCceee
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKT--ADPIKVCERLQKKSGRKVEL 58 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~--~~~~~i~~~i~~~~g~~~~~ 58 (225)
|+|.+|+.+|+++|..++||.++.+++..+++.|.++. ++...|+++|+ .+||.+..
T Consensus 11 MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~ 69 (71)
T COG2608 11 MTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEE 69 (71)
T ss_pred cCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeee
Confidence 89999999999999999999999999999999999873 68999999999 89998764
No 9
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.50 E-value=5.3e-07 Score=70.31 Aligned_cols=70 Identities=23% Similarity=0.460 Sum_probs=64.2
Q ss_pred EEEEEEEeeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEEeeCCHHHHHHHHHhhCCCceeecccccc
Q 027298 91 ITVVLNVRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIVKDEEK 161 (225)
Q Consensus 91 ~~~~l~vgm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~g~~~~~~l~~~l~~k~G~~a~~~~~~~~ 161 (225)
-++.|.|.|+|.+|+..|+..|..++||.++++|+..+.+.|.+...+..|.+.|+ ..|.+|.+...+.+
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~G~p 76 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGAGKP 76 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecCCch
Confidence 46788899999999999999999999999999999999999999899999999997 99999988766543
No 10
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.32 E-value=2.4e-06 Score=56.90 Aligned_cols=55 Identities=49% Similarity=0.930 Sum_probs=49.8
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEeccCCHHHHHHHHHHhcC-Ccee
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSG-RKVE 57 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~~g-~~~~ 57 (225)
|+|.+|...|.+.|+.+.||.++.++...+++++.+ .+++..++..+. +.| ....
T Consensus 13 ~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g-~~~p~~vl~~l~-k~~~k~~~ 68 (73)
T KOG1603|consen 13 MHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKG-NVDPVKLLKKLK-KTGGKRAE 68 (73)
T ss_pred cccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEE-ecCHHHHHHHHH-hcCCCceE
Confidence 799999999999999999999999999999999999 489999999999 555 4444
No 11
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.06 E-value=1.3e-05 Score=62.67 Aligned_cols=58 Identities=29% Similarity=0.578 Sum_probs=53.6
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEeccCCHHHHHHHHHHhcCCceeecC
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVELIS 60 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~~g~~~~~~s 60 (225)
|+|.+|++.|...|..++||.++.+++..+.+.|.. ...+..|.+.++ .+|.++.+.-
T Consensus 15 M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~t-s~p~s~i~~~le-~tGr~Avl~G 72 (247)
T KOG4656|consen 15 MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVET-SVPPSEIQNTLE-NTGRDAVLRG 72 (247)
T ss_pred chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEc-cCChHHHHHHHH-hhChheEEec
Confidence 899999999999999999999999999999999997 578999999999 8999987653
No 12
>PLN02957 copper, zinc superoxide dismutase
Probab=98.02 E-value=4.1e-05 Score=62.73 Aligned_cols=70 Identities=21% Similarity=0.471 Sum_probs=61.7
Q ss_pred EEEEEEEeeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEEeeCCHHHHHHHHHhhCCCceeecccccc
Q 027298 91 ITVVLNVRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIVKDEEK 161 (225)
Q Consensus 91 ~~~~l~vgm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~g~~~~~~l~~~l~~k~G~~a~~~~~~~~ 161 (225)
+++.|.++|.|..|+.++++.|..++||..+.+++..++++|........+...|+ ++||.+.++....+
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~~~~ 75 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLIGQGDP 75 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEecCCCc
Confidence 56778889999999999999999999999999999999999986678888999997 99999887766443
No 13
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.84 E-value=5.2e-05 Score=72.84 Aligned_cols=64 Identities=17% Similarity=0.405 Sum_probs=56.7
Q ss_pred EEEEEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEEeeCCHHHHHHHHHhhCCCceeecc
Q 027298 91 ITVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIVK 157 (225)
Q Consensus 91 ~~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~g~~~~~~l~~~l~~k~G~~a~~~~ 157 (225)
.+..|.| ||+|.+|+.+|+++|.+++||..+.+++. +.+|.+..+.+.+...++ ++||.+.+..
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~ 67 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIK-QAGYDASVSH 67 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHH-hcCCcccccc
Confidence 3689999 99999999999999999999999999984 556666678999999997 9999988764
No 14
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.73 E-value=8.2e-05 Score=69.62 Aligned_cols=62 Identities=35% Similarity=0.536 Sum_probs=55.5
Q ss_pred EEEEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEEe---eCC-HHHHHHHHHhhCCCceee
Q 027298 92 TVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKG---VVD-PVKLVNDVNKKTRKQASI 155 (225)
Q Consensus 92 ~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~g---~~~-~~~l~~~l~~k~G~~a~~ 155 (225)
+..|.| ||+|.+|+.+|+ .|.+++||..+.+|+.+++++|.. ..+ +..+...++ ..||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccccc
Confidence 578999 999999999999 999999999999999999999882 345 788999997 99998765
No 15
>PLN02957 copper, zinc superoxide dismutase
Probab=97.40 E-value=0.00087 Score=54.91 Aligned_cols=59 Identities=32% Similarity=0.550 Sum_probs=53.1
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEeccCCHHHHHHHHHHhcCCceeecCC
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVELISP 61 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~~g~~~~~~s~ 61 (225)
|+|.+|+..|++.|..++||..+.+++..+++.|.+ ......+...++ ++||.+.+++.
T Consensus 14 MsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~-~~~~~~I~~aIe-~~Gy~a~~~~~ 72 (238)
T PLN02957 14 MKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLG-SSPVKAMTAALE-QTGRKARLIGQ 72 (238)
T ss_pred ccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEe-cCCHHHHHHHHH-HcCCcEEEecC
Confidence 789999999999999999999999999999999987 467888889998 89999887653
No 16
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.40 E-value=0.002 Score=39.57 Aligned_cols=61 Identities=18% Similarity=0.358 Sum_probs=49.7
Q ss_pred EEEEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEEe---eCCHHHHHHHHHhhCCCce
Q 027298 92 TVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKG---VVDPVKLVNDVNKKTRKQA 153 (225)
Q Consensus 92 ~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~g---~~~~~~l~~~l~~k~G~~a 153 (225)
+..+.+ ++.|..|...++..+....++....+++....+.+.. ..+...+...+. ..||.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCCCc
Confidence 456889 9999999999999999999999999999988888772 346666766675 777753
No 17
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00058 Score=64.04 Aligned_cols=56 Identities=27% Similarity=0.554 Sum_probs=50.5
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEecc--CC-HHHHHHHHHHhcCCceee
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKT--AD-PIKVCERLQKKSGRKVEL 58 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~--~~-~~~i~~~i~~~~g~~~~~ 58 (225)
|+|++|+++|+ +|++++||..+.+|+.++++.+.++. .+ ...+...++ .+||.+..
T Consensus 11 m~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~~ 69 (713)
T COG2217 11 MTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSARL 69 (713)
T ss_pred cCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccccc
Confidence 89999999999 99999999999999999999999862 34 688999998 89998754
No 18
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.37 E-value=0.024 Score=34.50 Aligned_cols=55 Identities=25% Similarity=0.477 Sum_probs=44.2
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEecc--CCHHHHHHHHHHhcCCce
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKT--ADPIKVCERLQKKSGRKV 56 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~--~~~~~i~~~i~~~~g~~~ 56 (225)
|+|..|+..++..+....++....+++....+.+.++. .+...+...+. ..||.+
T Consensus 11 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 67 (68)
T TIGR00003 11 MTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGYEV 67 (68)
T ss_pred eEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCCCc
Confidence 57999999999999999999999999999998888742 35666666666 677653
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.86 E-value=0.029 Score=53.49 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=52.3
Q ss_pred cEEEEEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEE--eeCCHHHHHHHHHhhCCCceee
Q 027298 90 AITVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK--GVVDPVKLVNDVNKKTRKQASI 155 (225)
Q Consensus 90 ~~~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~--g~~~~~~l~~~l~~k~G~~a~~ 155 (225)
..+..+.+ ||+|.+|..++++.+..++||..+.+++...++.+. .... ..+...++ ..||.+..
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~-~~I~~aI~-~~Gy~a~~ 118 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIR-AQVESAVQ-KAGFSLRD 118 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccch-HHHHHHHH-hccccccc
Confidence 34678889 999999999999999999999999999998888776 2222 56667776 88987643
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=94.34 E-value=0.12 Score=49.38 Aligned_cols=56 Identities=30% Similarity=0.501 Sum_probs=46.5
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEeccCCHHHHHHHHHHhcCCcee
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVE 57 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~~g~~~~ 57 (225)
|+|.+|+..++..+..++||..+.+++.++++.+.++......+...++ .+||.+.
T Consensus 62 m~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~Gy~a~ 117 (741)
T PRK11033 62 MDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAGFSLR 117 (741)
T ss_pred CCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hcccccc
Confidence 7899999999999999999999999999999888875222256667777 7898865
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=91.54 E-value=2.7 Score=27.65 Aligned_cols=63 Identities=24% Similarity=0.401 Sum_probs=45.9
Q ss_pred EEEEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEE--e-eCCHHHHHHHHHhhCCCceee
Q 027298 92 TVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK--G-VVDPVKLVNDVNKKTRKQASI 155 (225)
Q Consensus 92 ~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~--g-~~~~~~l~~~l~~k~G~~a~~ 155 (225)
...+.+ ++.|..|...+...+....|+....++.......+. . ..+...+...+. ..|+.+++
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 90 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPSSL 90 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeEe
Confidence 456778 999999999999999999998888888777665554 1 235555555664 77776543
No 22
>PRK13748 putative mercuric reductase; Provisional
Probab=81.96 E-value=8 Score=35.55 Aligned_cols=64 Identities=20% Similarity=0.423 Sum_probs=48.5
Q ss_pred EEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEEe--eCCHHHHHHHHHhhCCCceeeccc
Q 027298 94 VLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKG--VVDPVKLVNDVNKKTRKQASIVKD 158 (225)
Q Consensus 94 ~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~g--~~~~~~l~~~l~~k~G~~a~~~~~ 158 (225)
.+.+ +++|..|..+++..+...+++....+++......+.. ..+...+...+. ..|+.+.+...
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeeccCc
Confidence 3557 9999999999999999999999888888887766652 235566666665 78877655544
No 23
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=78.33 E-value=16 Score=23.75 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=39.3
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEecc--CCHHHHHHHHHHhcCCcee
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKT--ADPIKVCERLQKKSGRKVE 57 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~--~~~~~i~~~i~~~~g~~~~ 57 (225)
+.|..|...++..+....++....+++......+.++. .+...+...+. ..|+.++
T Consensus 32 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~ 89 (92)
T TIGR02052 32 MTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPSS 89 (92)
T ss_pred eEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeE
Confidence 46899999999999998998888888877776665421 24444445555 5676643
No 24
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=72.60 E-value=28 Score=23.93 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=42.8
Q ss_pred cEEEEEEE-eeeChhHHHHHHHHhhccCCccEEEeec-----CC--CeEEEEe-eCCHHHHHHHHHhhCCCceee
Q 027298 90 AITVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNL-----AS--GQVIVKG-VVDPVKLVNDVNKKTRKQASI 155 (225)
Q Consensus 90 ~~~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~-----~~--~~~~V~g-~~~~~~l~~~l~~k~G~~a~~ 155 (225)
.+.++|.+ --+-.--.-.+-+.|++++||..+.+.. .+ -+++|.| .+|-+.|.+.|+ ++|...+.
T Consensus 5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg~IHS 78 (97)
T COG1888 5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGGAIHS 78 (97)
T ss_pred ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCCeeee
Confidence 35677777 3332334445667788999988777643 22 2334445 689999999997 99975443
No 25
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=71.82 E-value=23 Score=30.11 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=52.6
Q ss_pred hhhHHHHHHHhcCCCCcceEEEEccCCEEEEEeccCCHHHHHHHHHHhcCCce-eecCCCCCCCCCCCChhHHhhhhccc
Q 027298 4 EACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKV-ELISPLPKPPPPDADDQEKKEQQKVE 82 (225)
Q Consensus 4 ~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~~g~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~ 82 (225)
..|...++..+.+++||.++++ .+.++-.+.+++..|+.. ...+..
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~-------------~sre~~l~~L~~~lg~~~~~~l~~n-------------------- 117 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRF-------------ISREEALKELQPWLGFGALLMLDEN-------------------- 117 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEE-------------eCHHHHHHHHHHHcCchhhhcCCCC--------------------
Confidence 3577888999999999987765 355666666665777751 111111
Q ss_pred ccCCCCccEEEEEEEeeeChhHHHHHHHHhhccCCccEEEee
Q 027298 83 KKEEPPAAITVVLNVRMHCEACAQGLRKRIRKIQGVECVETN 124 (225)
Q Consensus 83 ~~~~~~~~~~~~l~vgm~C~~C~~~i~~~l~~~~GV~~v~v~ 124 (225)
|-...+++++ .-+.-...+.+.|+.++||.++..+
T Consensus 118 -----PLP~~~vV~~--~~p~~~~~i~~~l~~l~gV~~V~~~ 152 (297)
T COG2177 118 -----PLPDVFVVTP--DDPPQVKAIAAALRDLPGVAEVDDD 152 (297)
T ss_pred -----CCCceEEEEe--CCCccHHHHHHHHHcCccceehhcc
Confidence 1113445554 2256678889999999999988754
No 26
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=69.64 E-value=4.3 Score=18.02 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCc
Q 027298 200 ATKNYSEFAYAPQ 212 (225)
Q Consensus 200 ~~~~~~~~~~~~~ 212 (225)
|++-|.+..|||+
T Consensus 3 ppqG~pPQ~~Pp~ 15 (15)
T PF02162_consen 3 PPQGYPPQGYPPQ 15 (15)
T ss_pred CCcCCCCCCCCCC
Confidence 4444444555553
No 27
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=66.69 E-value=18 Score=19.25 Aligned_cols=53 Identities=30% Similarity=0.588 Sum_probs=34.9
Q ss_pred eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEEee--CCHHHHHHHHHhhCCC
Q 027298 98 RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGV--VDPVKLVNDVNKKTRK 151 (225)
Q Consensus 98 gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~g~--~~~~~l~~~l~~k~G~ 151 (225)
++.|..|...+...+....|+.....++......+... .+...+...+. ..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 60 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIE-DAGY 60 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHH-HcCC
Confidence 78899999999988888888877777766655444421 24444444443 4443
No 28
>PRK13748 putative mercuric reductase; Provisional
Probab=58.52 E-value=44 Score=30.69 Aligned_cols=59 Identities=20% Similarity=0.347 Sum_probs=44.6
Q ss_pred CcchhhHHHHHHHhcCCCCcceEEEEccCCEEEEEec-cCCHHHHHHHHHHhcCCceeecC
Q 027298 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGK-TADPIKVCERLQKKSGRKVELIS 60 (225)
Q Consensus 1 m~C~~C~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~-~~~~~~i~~~i~~~~g~~~~~~s 60 (225)
|+|.+|...++..+...+++....+++......+.+. ..+...+...+. ..|+...+.+
T Consensus 9 ~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~~ 68 (561)
T PRK13748 9 MTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLAD 68 (561)
T ss_pred eecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeeccC
Confidence 5799999999999999999888888888888777652 234555555666 6888765443
No 29
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=58.36 E-value=60 Score=22.56 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=41.9
Q ss_pred cEEEEEEE-eeeChhHHHHHHHHhhccCCccEEEeec-----CCCeEEE--Ee-eCCHHHHHHHHHhhCCCcee
Q 027298 90 AITVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNL-----ASGQVIV--KG-VVDPVKLVNDVNKKTRKQAS 154 (225)
Q Consensus 90 ~~~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~-----~~~~~~V--~g-~~~~~~l~~~l~~k~G~~a~ 154 (225)
.++++|.| -.+- --.-.+-..|+.++||..+.+.. .+..+.| .| .++.+.+.+.|+ ++|-..+
T Consensus 4 irRlVLDVlKP~~-p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~Gg~IH 75 (95)
T PF02680_consen 4 IRRLVLDVLKPHE-PSIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELGGVIH 75 (95)
T ss_dssp EEEEEEEEEEESS-S-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT-EEE
T ss_pred eeEEEEEeecCCC-CCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcCCeEE
Confidence 46788888 4443 34556778899999998887653 2333333 36 489999999997 9986543
No 30
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=56.36 E-value=32 Score=21.84 Aligned_cols=51 Identities=8% Similarity=0.073 Sum_probs=35.4
Q ss_pred EEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEE--eeCCHHHHHHHHHhhCCCcee
Q 027298 94 VLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK--GVVDPVKLVNDVNKKTRKQAS 154 (225)
Q Consensus 94 ~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~--g~~~~~~l~~~l~~k~G~~a~ 154 (225)
.|.+ |+.|+.....+.++|..++.- +.+.|. ......+|...++ ..||...
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~~di~~~~~-~~g~~~~ 55 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAVEDIPRWCE-ENGYEVV 55 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHH-HHTEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHHHHHHHHHH-HCCCEEE
Confidence 5777 999999999999999987432 334444 2234577888886 9998643
No 31
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=55.21 E-value=27 Score=27.09 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=37.1
Q ss_pred hhhHHHHHHHhcCCCCcceEEEEccCCE-------------------EEEEec--cCCHHHHHHHHH
Q 027298 4 EACARKVARALKGFEGVDDITADSKASK-------------------VVVKGK--TADPIKVCERLQ 49 (225)
Q Consensus 4 ~~C~~~I~~~l~~~~gv~~v~v~~~~~~-------------------~~v~~~--~~~~~~i~~~i~ 49 (225)
++|=..++..+.+++||.++.+-...+. +.|.+| .++...|++.+-
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~ 76 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFF 76 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHH
Confidence 5788999999999999999998877665 667776 367778887665
No 32
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=52.44 E-value=28 Score=22.34 Aligned_cols=32 Identities=22% Similarity=0.572 Sum_probs=20.0
Q ss_pred EEEEEEeeeChhHH------HHHHHHhhccCCccEEEe
Q 027298 92 TVVLNVRMHCEACA------QGLRKRIRKIQGVECVET 123 (225)
Q Consensus 92 ~~~l~vgm~C~~C~------~~i~~~l~~~~GV~~v~v 123 (225)
++.+.+.+..++|. ..++.+|..++||.++.+
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 45555544444444 577888999999998875
No 33
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.82 E-value=80 Score=21.76 Aligned_cols=50 Identities=22% Similarity=0.396 Sum_probs=34.4
Q ss_pred HHHHhcCCCCcceEEEE-----ccCC--EEEEEeccCCHHHHHHHHHHhcCCceeecC
Q 027298 10 VARALKGFEGVDDITAD-----SKAS--KVVVKGKTADPIKVCERLQKKSGRKVELIS 60 (225)
Q Consensus 10 I~~~l~~~~gv~~v~v~-----~~~~--~~~v~~~~~~~~~i~~~i~~~~g~~~~~~s 60 (225)
+...|++++||..|.+. ..+. .+++.+..++...|...|+ +.|..++.+.
T Consensus 24 ~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg~IHSiD 80 (97)
T COG1888 24 LALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGGAIHSID 80 (97)
T ss_pred HHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCCeeeehh
Confidence 34567888888877644 2333 3444454689999999999 8998877543
No 34
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=46.40 E-value=86 Score=21.38 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=31.4
Q ss_pred hHHHHHHHHhhccCCccEEEeecCCCeEEEE-eeCCHHHHHHHH
Q 027298 103 ACAQGLRKRIRKIQGVECVETNLASGQVIVK-GVVDPVKLVNDV 145 (225)
Q Consensus 103 ~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~-g~~~~~~l~~~l 145 (225)
.-...+.+.|..++|+.-...+...+++.|+ ...+...+.+.|
T Consensus 17 e~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i 60 (87)
T PRK10553 17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTI 60 (87)
T ss_pred HHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHH
Confidence 4467888999999999877777677888877 334555555544
No 35
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=44.96 E-value=3.4e+02 Score=27.37 Aligned_cols=124 Identities=15% Similarity=0.262 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCCcceEEEEccCCEEEEE--ec-cCCHH----HHHHHHHHhcCCceeecCCCCCCCCCCCChhHHhhhh
Q 027298 7 ARKVARALKGFEGVDDITADSKASKVVVK--GK-TADPI----KVCERLQKKSGRKVELISPLPKPPPPDADDQEKKEQQ 79 (225)
Q Consensus 7 ~~~I~~~l~~~~gv~~v~v~~~~~~~~v~--~~-~~~~~----~i~~~i~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~ 79 (225)
...||+.+..++|+..+.-....+..+|+ ++ ..+++ ++.+++. .+.... ...... .
T Consensus 63 t~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~d~d~A~~~V~~kv~-~~~~~L---P~~~~~---p---------- 125 (1009)
T COG0841 63 TQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGTDPDTAAVQVQNKIQ-QAESRL---PSGVQQ---P---------- 125 (1009)
T ss_pred hHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCCChHHHHHHHHHHHH-HHHhcC---CCccCC---C----------
Confidence 45789999999999988766555665554 43 34544 4555554 222111 000000 0
Q ss_pred cccccCCCCccEEEEEEE-e--ee----ChhHHHHHHHHhhccCCccEEEeecC-CCeEEEE--------eeCCHHHHHH
Q 027298 80 KVEKKEEPPAAITVVLNV-R--MH----CEACAQGLRKRIRKIQGVECVETNLA-SGQVIVK--------GVVDPVKLVN 143 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~l~v-g--m~----C~~C~~~i~~~l~~~~GV~~v~v~~~-~~~~~V~--------g~~~~~~l~~ 143 (225)
... .......-.+.+.+ . +. -..-...+...|.+++||.++.+.-. ...+.|. -..++.++..
T Consensus 126 ~v~-~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ 204 (1009)
T COG0841 126 GVT-VEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQS 204 (1009)
T ss_pred ceE-eccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHH
Confidence 000 00001112233333 2 21 01245568889999999999999764 4445555 1356777888
Q ss_pred HHHhhC
Q 027298 144 DVNKKT 149 (225)
Q Consensus 144 ~l~~k~ 149 (225)
.|+ ..
T Consensus 205 ai~-~q 209 (1009)
T COG0841 205 AIR-AQ 209 (1009)
T ss_pred HHH-Hh
Confidence 886 43
No 36
>PRK11018 hypothetical protein; Provisional
Probab=44.34 E-value=86 Score=20.64 Aligned_cols=53 Identities=9% Similarity=-0.023 Sum_probs=38.3
Q ss_pred EEEEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEE--eeCCHHHHHHHHHhhCCCcee
Q 027298 92 TVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK--GVVDPVKLVNDVNKKTRKQAS 154 (225)
Q Consensus 92 ~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~--g~~~~~~l~~~l~~k~G~~a~ 154 (225)
...|.+ |+.|+.-.-+..++|.+++.- +.+.|. .......|...++ ..||.+.
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~G---------~~L~V~~d~~~a~~di~~~~~-~~G~~v~ 63 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKKG---------EILEVVSDCPQSINNIPLDAR-NHGYTVL 63 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCCC---------CEEEEEeCCccHHHHHHHHHH-HcCCEEE
Confidence 468889 999999999999999877522 233333 2345567778885 9998764
No 37
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=43.68 E-value=13 Score=15.35 Aligned_cols=7 Identities=29% Similarity=1.146 Sum_probs=4.6
Q ss_pred ccCCCCC
Q 027298 198 YWATKNY 204 (225)
Q Consensus 198 ~~~~~~~ 204 (225)
|||+|.|
T Consensus 4 fw~ppiy 10 (12)
T PF08248_consen 4 FWPPPIY 10 (12)
T ss_pred cCCCCcc
Confidence 6777665
No 38
>PRK04435 hypothetical protein; Provisional
Probab=43.32 E-value=1.4e+02 Score=22.36 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=48.8
Q ss_pred CcceEEEEccCCEEEEEec----cCCHHHHHHHHHHhcCCceeecCCCCCCCCCCCChhHHhhhhcccccCCCCccEEEE
Q 027298 19 GVDDITADSKASKVVVKGK----TADPIKVCERLQKKSGRKVELISPLPKPPPPDADDQEKKEQQKVEKKEEPPAAITVV 94 (225)
Q Consensus 19 gv~~v~v~~~~~~~~v~~~----~~~~~~i~~~i~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (225)
+|..+.-....+.+++... ......+.+.|. ..|-.+..++..... .....+.
T Consensus 57 ~vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA-~~~aNIltI~q~i~~----------------------~g~a~vs 113 (147)
T PRK04435 57 YVFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIA-EAGGNILTINQSIPL----------------------QGRANVT 113 (147)
T ss_pred eeECccccCCCcEEEEEEEEecCCCHHHHHHHHHH-HcCCCeEEEEEEcCC----------------------CCEEEEE
Confidence 4444444445666666542 134667788887 677776644321100 1123455
Q ss_pred EEEeeeCh-hHHHHHHHHhhccCCccEEEe
Q 027298 95 LNVRMHCE-ACAQGLRKRIRKIQGVECVET 123 (225)
Q Consensus 95 l~vgm~C~-~C~~~i~~~l~~~~GV~~v~v 123 (225)
|.+...-. .....+...|..++||.++.+
T Consensus 114 ~tVevs~~~~~L~~Li~~L~~i~gV~~V~i 143 (147)
T PRK04435 114 ISIDTSSMEGDIDELLEKLRNLDGVEKVEL 143 (147)
T ss_pred EEEEeCChHHHHHHHHHHHHcCCCcEEEEE
Confidence 55533333 478899999999999998876
No 39
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=42.94 E-value=73 Score=22.15 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCcceEEEE-----ccCCEEE--EEeccCCHHHHHHHHHHhcCCceeec
Q 027298 9 KVARALKGFEGVDDITAD-----SKASKVV--VKGKTADPIKVCERLQKKSGRKVELI 59 (225)
Q Consensus 9 ~I~~~l~~~~gv~~v~v~-----~~~~~~~--v~~~~~~~~~i~~~i~~~~g~~~~~~ 59 (225)
.+...|..++||..+.+. ..+..+. +.++.++...+.++|+ ..|-.+..+
T Consensus 21 e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~Gg~IHSI 77 (95)
T PF02680_consen 21 ELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELGGVIHSI 77 (95)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT-EEEEE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcCCeEEee
Confidence 355678999999887654 3334443 3444589999999999 788877644
No 40
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.43 E-value=87 Score=19.75 Aligned_cols=61 Identities=21% Similarity=0.168 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHhcCCceeecCCCCCCCCCCCChhHHhhhhcccccCCCCccEEEEEEEeeeChh-HHHHHHHHhhccCCc
Q 027298 40 DPIKVCERLQKKSGRKVELISPLPKPPPPDADDQEKKEQQKVEKKEEPPAAITVVLNVRMHCEA-CAQGLRKRIRKIQGV 118 (225)
Q Consensus 40 ~~~~i~~~i~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vgm~C~~-C~~~i~~~l~~~~GV 118 (225)
-...+...+. +.|..+..++..... .....+.|.+...-.. .-..+.+.|++++||
T Consensus 13 ~l~~I~~~la-~~~inI~~i~~~~~~----------------------~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V 69 (76)
T cd04888 13 VLSKVLNTIA-QVRGNVLTINQNIPI----------------------HGRANVTISIDTSTMNGDIDELLEELREIDGV 69 (76)
T ss_pred hHHHHHHHHH-HcCCCEEEEEeCCCC----------------------CCeEEEEEEEEcCchHHHHHHHHHHHhcCCCe
Confidence 4667788887 677777655321100 1123455555444454 788999999999999
Q ss_pred cEEEe
Q 027298 119 ECVET 123 (225)
Q Consensus 119 ~~v~v 123 (225)
.++.+
T Consensus 70 ~~v~~ 74 (76)
T cd04888 70 EKVEL 74 (76)
T ss_pred EEEEE
Confidence 98875
No 41
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=41.67 E-value=68 Score=24.50 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=35.3
Q ss_pred hhhHHHHHHHhcCCCCcceEEEEccCCE--------------EEEEec--cCCHHHHHHHHH
Q 027298 4 EACARKVARALKGFEGVDDITADSKASK--------------VVVKGK--TADPIKVCERLQ 49 (225)
Q Consensus 4 ~~C~~~I~~~l~~~~gv~~v~v~~~~~~--------------~~v~~~--~~~~~~i~~~i~ 49 (225)
++|=..++..+.+++||.++.+-...+. +.|.+| .++.+.|++.+-
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~ 69 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLF 69 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHH
Confidence 5788899999999999999988766533 556676 267778877665
No 42
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.79 E-value=76 Score=19.92 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=33.5
Q ss_pred EEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEE--eeCCHHHHHHHHHhhCCCceee
Q 027298 95 LNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK--GVVDPVKLVNDVNKKTRKQASI 155 (225)
Q Consensus 95 l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~--g~~~~~~l~~~l~~k~G~~a~~ 155 (225)
|.+ |+.|+.-...+.++| .+.. .+.+.|. .......|...++ +.||....
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~-~~G~~~~~ 54 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAE-SRGYEVSV 54 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHH-HcCCEEEE
Confidence 456 889999989999988 5532 2233333 2234467888886 99997743
No 43
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=37.38 E-value=1.5e+02 Score=20.87 Aligned_cols=56 Identities=9% Similarity=0.162 Sum_probs=33.2
Q ss_pred EEEEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEE--eeCCHHHHHHHHHhhC
Q 027298 93 VVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK--GVVDPVKLVNDVNKKT 149 (225)
Q Consensus 93 ~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~--g~~~~~~l~~~l~~k~ 149 (225)
.+|++ |+.-+.+...|...++.+..|.-|.+........|. ..-.+..++..+. ..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~-~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLK-EA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHH-HT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHH-hc
Confidence 35677 777777789999999999999998888878888887 3345677777775 44
No 44
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=36.50 E-value=55 Score=25.79 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=35.9
Q ss_pred hhhHHHHHHHhcCCCCcceEEEEccCCE-------------------EEEEec--cCCHHHHHHHHH
Q 027298 4 EACARKVARALKGFEGVDDITADSKASK-------------------VVVKGK--TADPIKVCERLQ 49 (225)
Q Consensus 4 ~~C~~~I~~~l~~~~gv~~v~v~~~~~~-------------------~~v~~~--~~~~~~i~~~i~ 49 (225)
++|=..++..+.+++||.++.+-...+. +.|.+| .++...|++.+-
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff 81 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFF 81 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHH
Confidence 4788888999999999999998877664 667776 267777777665
No 45
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=35.71 E-value=2.7e+02 Score=23.69 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=23.1
Q ss_pred EEEEE--eeeChhHHHHHHHHhhccCCccEEEee
Q 027298 93 VVLNV--RMHCEACAQGLRKRIRKIQGVECVETN 124 (225)
Q Consensus 93 ~~l~v--gm~C~~C~~~i~~~l~~~~GV~~v~v~ 124 (225)
+.+++ +..-..-...+.+.+.+++||.++..+
T Consensus 131 i~V~~~~~~~~~~~~~~i~~~l~~~~~V~~v~~~ 164 (309)
T PRK11026 131 AIIIPKLDFQSSEKLNTLRDRLAQIKGVDEVRMD 164 (309)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhcCCCCceeecC
Confidence 44444 334556778888999999999988765
No 46
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=34.85 E-value=73 Score=25.67 Aligned_cols=46 Identities=13% Similarity=0.051 Sum_probs=36.1
Q ss_pred hhhHHHHHHHhcCCCCcceEEEEccCC-------------------EEEEEec--cCCHHHHHHHHH
Q 027298 4 EACARKVARALKGFEGVDDITADSKAS-------------------KVVVKGK--TADPIKVCERLQ 49 (225)
Q Consensus 4 ~~C~~~I~~~l~~~~gv~~v~v~~~~~-------------------~~~v~~~--~~~~~~i~~~i~ 49 (225)
++|-..++..+.+++||.++.+-...+ .+.|.+| .++.+.|++.+-
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff 118 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFW 118 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 578899999999999999999887744 2667776 267788877665
No 47
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=33.78 E-value=1.4e+02 Score=19.72 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=30.3
Q ss_pred HHHHHHHHhhccCCccEEEeecCCCeEEEE-eeCCHHHHHHHHH
Q 027298 104 CAQGLRKRIRKIQGVECVETNLASGQVIVK-GVVDPVKLVNDVN 146 (225)
Q Consensus 104 C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~-g~~~~~~l~~~l~ 146 (225)
=...+.+.|..++|+.-...+.. +++.|+ ...+...+.+.+.
T Consensus 16 ~~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~ 58 (79)
T PF03927_consen 16 RLEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLID 58 (79)
T ss_dssp CHHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHH
Confidence 45678889999999976666655 888777 4456666666664
No 48
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=32.66 E-value=1.3e+02 Score=22.82 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=34.5
Q ss_pred hhhHHHHHHHhcCCCCcceEEEEccCC-------------------EEEEEec--cCCHHHHHHHHH
Q 027298 4 EACARKVARALKGFEGVDDITADSKAS-------------------KVVVKGK--TADPIKVCERLQ 49 (225)
Q Consensus 4 ~~C~~~I~~~l~~~~gv~~v~v~~~~~-------------------~~~v~~~--~~~~~~i~~~i~ 49 (225)
++|=..++..+.+++||.++.+-...+ .+.|.+| .++...|++.+-
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~ 73 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFF 73 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHH
Confidence 478899999999999999999887655 3456665 357777777665
No 49
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=30.45 E-value=1.2e+02 Score=19.71 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=29.0
Q ss_pred hhccCCccEEEeecCCCeEEEE--eeCCHHHHHHHHHhhCCCceee
Q 027298 112 IRKIQGVECVETNLASGQVIVK--GVVDPVKLVNDVNKKTRKQASI 155 (225)
Q Consensus 112 l~~~~GV~~v~v~~~~~~~~V~--g~~~~~~l~~~l~~k~G~~a~~ 155 (225)
|..++||..+... ..+.+.+. ...+...|+..|. ..|. +.-
T Consensus 26 l~~~~~v~~v~~~-~~~~~~i~l~~~~~~~~ll~~l~-~~g~-I~~ 68 (84)
T PF13732_consen 26 LEELPGVESVEQD-GDGKLRIKLEDEETANELLQELI-EKGI-IRS 68 (84)
T ss_pred HhhCCCeEEEEEe-CCcEEEEEECCcccHHHHHHHHH-hCCC-eeE
Confidence 7778999998764 34435444 5567888999997 7787 543
No 50
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=28.64 E-value=1.7e+02 Score=18.86 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=25.9
Q ss_pred EEEEEEEeeeChhHHHHHHHHhhccCCccEEE
Q 027298 91 ITVVLNVRMHCEACAQGLRKRIRKIQGVECVE 122 (225)
Q Consensus 91 ~~~~l~vgm~C~~C~~~i~~~l~~~~GV~~v~ 122 (225)
..+.|.+......-...+...|++++||.++.
T Consensus 48 ~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 48 ARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 45666667777788899999999999998774
No 51
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=27.97 E-value=2.3e+02 Score=28.39 Aligned_cols=129 Identities=16% Similarity=0.251 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCCCcceEEEEccCCEEEEEec---cCCHHHHHHHHHHhcCCceeecCCCCCCCCCCCChhHHhhhhcccc
Q 027298 7 ARKVARALKGFEGVDDITADSKASKVVVKGK---TADPIKVCERLQKKSGRKVELISPLPKPPPPDADDQEKKEQQKVEK 83 (225)
Q Consensus 7 ~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~---~~~~~~i~~~i~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
...+|+.|+.++|+.++.-....+...+... ..+.......++.+... + .+..|. +...+.-.
T Consensus 62 t~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~~d~~~a~~~v~~~i~~-~--~~~LP~-----------~~~~p~i~ 127 (1021)
T PF00873_consen 62 TKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDGTDIDEALQEVREKIDQ-I--RSDLPP-----------GVEEPQIF 127 (1021)
T ss_dssp HHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTTS-HHHHHHHHHHHHHH-H--GGGS-H-----------HHHHHEEE
T ss_pred HHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccccCHHHHHHHHHHHHHh-h--hhhCcc-----------cccCCcee
Confidence 3568999999999999998888888877643 34555544444421100 0 000010 00000000
Q ss_pred cCCCCccEEEEEEE-ee---eC-----hhHHHHHHHHhhccCCccEEEeecC-CCeEEEE--------eeCCHHHHHHHH
Q 027298 84 KEEPPAAITVVLNV-RM---HC-----EACAQGLRKRIRKIQGVECVETNLA-SGQVIVK--------GVVDPVKLVNDV 145 (225)
Q Consensus 84 ~~~~~~~~~~~l~v-gm---~C-----~~C~~~i~~~l~~~~GV~~v~v~~~-~~~~~V~--------g~~~~~~l~~~l 145 (225)
........-+.+.+ +- .. ......++..|.+++||..+.+.-. ...+.|. -.++..++.+.|
T Consensus 128 ~~~~~~~~i~~~~l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~v~~~l 207 (1021)
T PF00873_consen 128 KFDPSDSPIMILALTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSDVAQAL 207 (1021)
T ss_dssp EEEEECCEEEEEEEEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHHHHHHH
T ss_pred eccCCCceeEEEEeccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHHHHHHH
Confidence 00000111234444 32 11 1134568889999999999998753 3445555 125667778888
Q ss_pred HhhCC
Q 027298 146 NKKTR 150 (225)
Q Consensus 146 ~~k~G 150 (225)
+ ...
T Consensus 208 ~-~~n 211 (1021)
T PF00873_consen 208 Q-ANN 211 (1021)
T ss_dssp H-HHS
T ss_pred H-Hhh
Confidence 6 444
No 52
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=27.86 E-value=1.2e+02 Score=23.62 Aligned_cols=28 Identities=18% Similarity=0.474 Sum_probs=22.7
Q ss_pred hhHHHHHHHHhhccCCccEEEeecCCCe
Q 027298 102 EACAQGLRKRIRKIQGVECVETNLASGQ 129 (225)
Q Consensus 102 ~~C~~~i~~~l~~~~GV~~v~v~~~~~~ 129 (225)
.+|-.-++..+.+++||.++.+-..++.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCC
Confidence 4577778888899999999999876654
No 53
>PF02672 CP12: CP12 domain; InterPro: IPR003823 This entry represents an uncharacterised domain in proteins of unknown function. This domain is found associated with CBS domains in some proteins IPR000644 from INTERPRO.; PDB: 3B1K_I 3B1J_D 3RVD_N 3QV1_I 2LJ9_A.
Probab=27.57 E-value=17 Score=23.83 Aligned_cols=13 Identities=54% Similarity=1.137 Sum_probs=10.4
Q ss_pred cccccCCCCc--ccc
Q 027298 212 QIFSDENPNA--CFV 224 (225)
Q Consensus 212 ~~~~denp~~--C~i 224 (225)
..|+++||.+ |.|
T Consensus 54 E~yC~~nPea~Ecrv 68 (71)
T PF02672_consen 54 ELYCDENPEADECRV 68 (71)
T ss_dssp HHHHHHSTTSTTTTT
T ss_pred HHHHHHCCCcHHhhh
Confidence 6799999986 654
No 54
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=24.85 E-value=2e+02 Score=18.50 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=30.2
Q ss_pred EEEEEE-eeeChhHHHHHHHHhhccCC-ccEEEeecCCCeEEEE
Q 027298 92 TVVLNV-RMHCEACAQGLRKRIRKIQG-VECVETNLASGQVIVK 133 (225)
Q Consensus 92 ~~~l~v-gm~C~~C~~~i~~~l~~~~G-V~~v~v~~~~~~~~V~ 133 (225)
.+.+.+ |.+.++-...+.+.|....+ +.+.+.....+..+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~ 45 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLI 45 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEE
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEE
Confidence 467888 99999999999999999876 6666666656665543
No 55
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=23.96 E-value=1.2e+02 Score=23.60 Aligned_cols=34 Identities=18% Similarity=0.456 Sum_probs=22.7
Q ss_pred EEEEEEeeeChhHH------HHHHHHhhccCCccEEEeec
Q 027298 92 TVVLNVRMHCEACA------QGLRKRIRKIQGVECVETNL 125 (225)
Q Consensus 92 ~~~l~vgm~C~~C~------~~i~~~l~~~~GV~~v~v~~ 125 (225)
++.+.+.++.+.|. ..++.+|..++||.++.+++
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 34445444444444 35788899999999888764
No 56
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=23.71 E-value=2.4e+02 Score=19.12 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=24.5
Q ss_pred HHHHHHhhccCCccEEEeecCCCeEEEEeeCCHHHHHHHHHhhCC
Q 027298 106 QGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTR 150 (225)
Q Consensus 106 ~~i~~~l~~~~GV~~v~v~~~~~~~~V~g~~~~~~l~~~l~~k~G 150 (225)
..++.+|..++|+.++.+++. ....-.++.+.+.-+.++|
T Consensus 58 ~~i~~al~~l~gv~~v~v~i~-----~~~~~~~~~~~~~~~~~~~ 97 (99)
T TIGR02945 58 GEVENAVRAVPGVGSVTVELV-----WDPPWTPERMSEEARLELG 97 (99)
T ss_pred HHHHHHHHhCCCCceEEEEEE-----eeCCCChHHCCHHHHHHcC
Confidence 356778888899998888752 2222445555554444444
No 57
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=23.37 E-value=2.3e+02 Score=21.44 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=28.5
Q ss_pred EEEEEEE-eeeChhHHHHHHHHhhccCCccEEEeecC-CCeE
Q 027298 91 ITVVLNV-RMHCEACAQGLRKRIRKIQGVECVETNLA-SGQV 130 (225)
Q Consensus 91 ~~~~l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~-~~~~ 130 (225)
..+++.| .-.|..|...|.....+ -|+.++.|... ++++
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~-lGl~~L~I~~~~sG~~ 140 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEK-LGLKSLTIHEPDSGKV 140 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHH-cCCCeEEEEecCCCcE
Confidence 4688888 88999999777666554 48888887765 4443
No 58
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=23.16 E-value=7.9e+02 Score=24.86 Aligned_cols=42 Identities=7% Similarity=0.164 Sum_probs=31.3
Q ss_pred HHHHHHHhhccCCccEEEeecCCCeEEEE--------eeCCHHHHHHHHH
Q 027298 105 AQGLRKRIRKIQGVECVETNLASGQVIVK--------GVVDPVKLVNDVN 146 (225)
Q Consensus 105 ~~~i~~~l~~~~GV~~v~v~~~~~~~~V~--------g~~~~~~l~~~l~ 146 (225)
...++..|.+++||.++.+......+.|. -.+++.++...|+
T Consensus 159 ~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~ 208 (1037)
T PRK10555 159 ASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIE 208 (1037)
T ss_pred HHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHH
Confidence 45688899999999999998654445555 1356777888886
No 59
>KOG3411 consensus 40S ribosomal protein S19 [Translation, ribosomal structure and biogenesis]
Probab=22.51 E-value=90 Score=23.08 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=28.7
Q ss_pred eChhHHHHHHHHhhccCCccEEEeecCCCe-EEEEeeCCHHHHHHHHH
Q 027298 100 HCEACAQGLRKRIRKIQGVECVETNLASGQ-VIVKGVVDPVKLVNDVN 146 (225)
Q Consensus 100 ~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~-~~V~g~~~~~~l~~~l~ 146 (225)
+|.+...-.+++|+.+..+.-++.+...++ ++-.|.-|.+.|+..|+
T Consensus 92 ~~~as~~i~rkvlQ~Le~~~~ve~hp~gGR~lt~~GqrdldrIa~~i~ 139 (143)
T KOG3411|consen 92 FCDASGGIARKVLQALEKMGIVEKHPKGGRRLTEQGQRDLDRIAGQIR 139 (143)
T ss_pred hhccccHHHHHHHHHHHhCCceeeCCCCcceeCcccchhHHHHHHHHH
Confidence 455544444555555555555566655544 34448889999988875
No 60
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=22.13 E-value=2.2e+02 Score=18.02 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=34.7
Q ss_pred EEE-eeeChhHHHHHHHHhhccCCccEEEeecCCCeEEEE--eeCCHHHHHHHHHhhCCCcee
Q 027298 95 LNV-RMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK--GVVDPVKLVNDVNKKTRKQAS 154 (225)
Q Consensus 95 l~v-gm~C~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~--g~~~~~~l~~~l~~k~G~~a~ 154 (225)
|.+ |+.|+.=.-++.++|..+.. .+.+.|. ......+|....+ ..||...
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~~a~~di~~~~~-~~G~~~~ 54 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDPGFARDAQAWCK-STGNTLI 54 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHH-HcCCEEE
Confidence 456 88999988899999987742 2334444 2345577788886 9998765
No 61
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=21.25 E-value=2.8e+02 Score=18.87 Aligned_cols=43 Identities=14% Similarity=0.342 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCCcceEEEEccCCEEEEEeccCCHHHHHHHHH
Q 027298 7 ARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQ 49 (225)
Q Consensus 7 ~~~I~~~l~~~~gv~~v~v~~~~~~~~v~~~~~~~~~i~~~i~ 49 (225)
...+...|..++|++-...+...+++.|+....+...+.+.+.
T Consensus 19 ~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~ 61 (87)
T PRK10553 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIE 61 (87)
T ss_pred HHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHH
Confidence 4567888999999986666667789888875445565555554
No 62
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=20.67 E-value=2.5e+02 Score=21.33 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=27.2
Q ss_pred hhHHHHHHHHhhccCCccEEEeecCCCeEEEE
Q 027298 102 EACAQGLRKRIRKIQGVECVETNLASGQVIVK 133 (225)
Q Consensus 102 ~~C~~~i~~~l~~~~GV~~v~v~~~~~~~~V~ 133 (225)
..=+..|...+.+++||.++.+-.....+.|.
T Consensus 74 ~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Va 105 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVEDATVVVTDDNAYVA 105 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEECCEEEEE
Confidence 45678899999999999999998888888776
No 63
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=20.50 E-value=1.8e+02 Score=24.56 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=34.8
Q ss_pred hhhHHHHHHHhcCCCCcceEEEEccCCE-------------------EEEEec--cCCHHHHHHHHH
Q 027298 4 EACARKVARALKGFEGVDDITADSKASK-------------------VVVKGK--TADPIKVCERLQ 49 (225)
Q Consensus 4 ~~C~~~I~~~l~~~~gv~~v~v~~~~~~-------------------~~v~~~--~~~~~~i~~~i~ 49 (225)
++|=..++..+.+++||.++.+-...+. |.|.+| .++.+.|++.+-
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~ 200 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFF 200 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 5788899999999999999988766543 566776 257777777654
Done!