Query 027299
Match_columns 225
No_of_seqs 152 out of 810
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 07:52:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03718 R_switched_Alx integ 100.0 2.8E-40 6.1E-45 298.6 13.1 116 110-225 28-143 (302)
2 PF03741 TerC: Integral membra 99.9 2.8E-23 6.2E-28 175.0 7.9 76 148-225 1-76 (183)
3 COG0861 TerC Membrane protein 99.9 4.8E-23 1E-27 182.5 9.6 93 131-225 2-96 (254)
4 TIGR03716 R_switched_YkoY inte 99.8 1.8E-21 3.9E-26 169.0 7.9 71 152-225 2-72 (215)
5 TIGR03717 R_switched_YjbE inte 99.7 7.8E-18 1.7E-22 141.5 9.2 76 147-225 2-77 (176)
6 PRK14013 hypothetical protein; 99.1 1.5E-09 3.3E-14 100.8 12.3 101 118-223 6-131 (338)
7 COG2899 Uncharacterized protei 98.1 1.3E-05 2.9E-10 74.5 9.2 89 114-204 3-95 (346)
8 PF03741 TerC: Integral membra 96.7 0.011 2.4E-07 50.4 8.7 66 151-225 113-179 (183)
9 TIGR03717 R_switched_YjbE inte 95.9 0.052 1.1E-06 46.2 8.5 69 149-225 102-171 (176)
10 TIGR03716 R_switched_YkoY inte 95.9 0.046 1E-06 48.3 8.4 68 149-225 101-169 (215)
11 COG0861 TerC Membrane protein 95.7 0.062 1.3E-06 48.6 8.5 66 151-225 141-207 (254)
12 PRK10995 inner membrane protei 94.7 0.14 3.1E-06 44.4 7.6 65 159-225 22-90 (221)
13 PF04332 DUF475: Protein of un 93.9 0.16 3.4E-06 47.4 6.4 46 159-206 1-47 (294)
14 PRK09304 arginine exporter pro 93.2 0.69 1.5E-05 39.1 8.6 73 147-225 9-86 (207)
15 TIGR00427 membrane protein, Ma 92.9 0.53 1.1E-05 40.7 7.6 66 158-225 20-89 (201)
16 PF01914 MarC: MarC family int 92.3 0.72 1.6E-05 39.8 7.7 65 159-225 18-86 (203)
17 TIGR03718 R_switched_Alx integ 91.4 0.74 1.6E-05 42.9 7.3 66 152-225 200-265 (302)
18 PRK11111 hypothetical protein; 91.2 1 2.2E-05 39.5 7.6 65 159-225 24-92 (214)
19 PRK10323 cysteine/O-acetylseri 91.2 2.3 4.9E-05 35.7 9.4 62 158-225 21-89 (195)
20 PRK10739 putative antibiotic t 91.1 1.1 2.4E-05 38.9 7.6 64 159-224 18-85 (197)
21 TIGR00948 2a75 L-lysine export 91.1 1.2 2.6E-05 36.4 7.4 61 159-225 7-72 (177)
22 COG2095 MarC Multiple antibiot 90.0 1.2 2.7E-05 39.0 7.0 66 158-225 20-89 (203)
23 PRK10229 threonine efflux syst 89.4 1.9 4.1E-05 36.0 7.4 67 152-225 14-88 (206)
24 COG1280 RhtB Putative threonin 85.4 4.3 9.3E-05 34.7 7.4 69 153-225 16-89 (208)
25 PRK10520 rhtB homoserine/homos 85.3 2.8 6.1E-05 35.0 6.2 64 156-225 19-89 (205)
26 PRK10958 leucine export protei 84.9 4.9 0.00011 34.3 7.5 64 156-225 23-93 (212)
27 PRK11469 hypothetical protein; 83.3 9.8 0.00021 32.7 8.7 94 123-225 70-180 (188)
28 TIGR00949 2A76 The Resistance 82.8 4.4 9.5E-05 33.0 6.1 42 184-225 25-71 (185)
29 COG1971 Predicted membrane pro 80.1 19 0.00042 31.9 9.5 100 122-225 69-182 (190)
30 PF03596 Cad: Cadmium resistan 78.8 7.8 0.00017 33.9 6.7 65 158-225 5-72 (191)
31 PF02659 DUF204: Domain of unk 72.6 31 0.00067 24.3 8.1 65 157-223 1-67 (67)
32 PF01810 LysE: LysE type trans 72.2 9.8 0.00021 30.9 5.3 60 159-225 9-76 (191)
33 COG1971 Predicted membrane pro 71.5 29 0.00062 30.8 8.3 76 146-224 2-82 (190)
34 COG1279 Lysine efflux permease 70.9 26 0.00056 31.4 7.9 67 150-225 12-86 (202)
35 TIGR02840 spore_YtaF putative 70.0 56 0.0012 28.3 9.7 69 147-225 128-204 (206)
36 TIGR02840 spore_YtaF putative 62.8 51 0.0011 28.6 8.1 73 150-225 3-77 (206)
37 TIGR00901 2A0125 AmpG-related 59.8 1.1E+02 0.0025 26.2 11.3 56 152-209 92-147 (356)
38 PRK11469 hypothetical protein; 57.9 87 0.0019 27.0 8.6 76 146-224 2-82 (188)
39 PF06541 DUF1113: Protein of u 55.8 79 0.0017 26.2 7.8 53 143-202 70-127 (157)
40 TIGR01937 nqrB NADH:ubiquinone 55.6 83 0.0018 31.0 8.9 49 143-193 125-181 (413)
41 PRK05349 Na(+)-translocating N 52.7 85 0.0018 30.9 8.5 49 144-193 125-180 (405)
42 PF03899 ATP_synt_I: ATP synth 51.5 90 0.0019 22.5 9.7 78 131-213 13-92 (100)
43 PRK08633 2-acyl-glycerophospho 50.6 2.9E+02 0.0063 28.1 12.1 46 160-207 120-165 (1146)
44 PF07690 MFS_1: Major Facilita 49.2 1.5E+02 0.0033 24.5 11.6 74 146-221 87-163 (352)
45 TIGR00779 cad cadmium resistan 47.1 30 0.00064 30.6 4.1 64 158-225 5-71 (193)
46 TIGR00806 rfc RFC reduced fola 46.2 1.3E+02 0.0029 30.3 8.9 40 173-213 142-181 (511)
47 PRK10263 DNA translocase FtsK; 45.9 2.2E+02 0.0047 32.3 11.0 15 185-199 143-157 (1355)
48 TIGR00844 c_cpa1 na(+)/h(+) an 44.1 3.2E+02 0.0069 29.3 11.6 66 156-222 261-339 (810)
49 PLN02878 homogentisate phytylt 43.8 2.8E+02 0.006 26.0 10.1 38 92-135 51-88 (280)
50 PF04632 FUSC: Fusaric acid re 43.5 2.6E+02 0.0056 27.1 10.2 93 119-223 340-432 (650)
51 PRK10755 sensor protein BasS/P 41.7 2.4E+02 0.0052 24.6 9.4 35 112-146 2-36 (356)
52 COG1292 BetT Choline-glycine b 40.5 3.8E+02 0.0081 27.5 11.0 98 109-207 128-260 (537)
53 KOG2322 N-methyl-D-aspartate r 40.2 95 0.0021 28.6 6.3 43 179-221 193-235 (237)
54 KOG0569 Permease of the major 39.4 1.3E+02 0.0029 29.8 7.7 48 174-222 329-378 (485)
55 KOG0255 Synaptic vesicle trans 39.4 2.6E+02 0.0057 25.9 9.2 67 145-218 177-243 (521)
56 COG3329 Predicted permease [Ge 38.5 1.3E+02 0.0027 29.4 7.1 116 64-202 176-298 (372)
57 PRK10019 nickel/cobalt efflux 38.1 2.5E+02 0.0054 26.1 8.8 49 119-167 9-57 (279)
58 PF03547 Mem_trans: Membrane t 37.8 3E+02 0.0065 24.7 11.6 12 189-200 310-321 (385)
59 TIGR00900 2A0121 H+ Antiporter 37.2 2.4E+02 0.0053 23.4 13.4 49 160-210 109-157 (365)
60 PF02460 Patched: Patched fami 36.8 1.6E+02 0.0035 29.9 8.0 32 192-223 348-379 (798)
61 PF11298 DUF3099: Protein of u 35.6 1.2E+02 0.0026 23.1 5.3 47 176-224 11-59 (73)
62 COG2119 Predicted membrane pro 34.6 1.4E+02 0.0031 26.7 6.4 61 159-224 17-80 (190)
63 COG1269 NtpI Archaeal/vacuolar 34.3 1.1E+02 0.0025 31.0 6.5 56 160-224 456-511 (660)
64 TIGR00898 2A0119 cation transp 34.2 3.6E+02 0.0079 24.5 11.3 47 173-220 208-254 (505)
65 COG4300 CadD Predicted permeas 33.1 2.1E+02 0.0046 25.9 7.3 78 146-225 4-83 (205)
66 PRK05951 ubiA prenyltransferas 32.8 1.6E+02 0.0034 26.6 6.6 27 109-135 84-110 (296)
67 PF06570 DUF1129: Protein of u 30.4 3.5E+02 0.0075 23.1 10.9 24 150-173 112-135 (206)
68 PF09930 DUF2162: Predicted tr 28.6 1.5E+02 0.0032 26.8 5.5 44 163-208 46-89 (224)
69 PRK06080 1,4-dihydroxy-2-napht 28.4 4.2E+02 0.009 23.4 11.2 29 109-137 81-109 (293)
70 TIGR00880 2_A_01_02 Multidrug 28.2 2.1E+02 0.0045 19.9 11.1 48 173-220 79-128 (141)
71 PRK14013 hypothetical protein; 28.1 1.7E+02 0.0036 28.3 6.1 73 145-225 223-297 (338)
72 COG0738 FucP Fucose permease [ 26.7 2.9E+02 0.0063 27.5 7.6 29 181-213 276-304 (422)
73 PF03203 MerC: MerC mercury re 26.5 1.7E+02 0.0037 23.0 5.0 41 177-222 62-108 (116)
74 TIGR00918 2A060602 The Eukaryo 26.2 7.7E+02 0.017 27.4 11.3 31 193-223 528-558 (1145)
75 COG3763 Uncharacterized protei 26.0 70 0.0015 24.7 2.6 21 119-139 4-24 (71)
76 PRK05702 flhB flagellar biosyn 26.0 5.9E+02 0.013 24.3 10.4 32 88-120 5-36 (359)
77 PRK12392 bacteriochlorophyll c 25.2 5.7E+02 0.012 23.9 12.7 33 109-141 89-121 (331)
78 PF00689 Cation_ATPase_C: Cati 24.0 3.7E+02 0.0081 21.4 7.6 22 179-200 124-145 (182)
79 PRK12505 putative monovalent c 24.0 3E+02 0.0066 23.7 6.4 31 126-156 28-58 (159)
80 PF09788 Tmemb_55A: Transmembr 23.6 2.2E+02 0.0047 26.6 5.8 42 175-216 191-239 (256)
81 TIGR00920 2A060605 3-hydroxy-3 23.6 9.8E+02 0.021 26.2 11.2 99 122-223 97-220 (886)
82 PF08507 COPI_assoc: COPI asso 23.6 3.9E+02 0.0084 21.4 11.4 57 163-224 43-100 (136)
83 PF11127 DUF2892: Protein of u 23.5 1.8E+02 0.0039 20.4 4.3 16 209-224 33-48 (66)
84 KOG2532 Permease of the major 23.2 6.8E+02 0.015 24.3 9.4 47 174-220 157-206 (466)
85 PF04070 DUF378: Domain of unk 22.5 2.6E+02 0.0057 20.8 5.1 42 182-223 16-60 (62)
86 PRK12869 ubiA protoheme IX far 22.4 1.6E+02 0.0034 26.3 4.6 21 109-129 77-97 (279)
87 PRK13741 conjugal transfer ent 22.1 5.6E+02 0.012 22.7 8.9 33 169-201 84-116 (171)
88 PRK12887 ubiA tocopherol phyty 22.1 6.2E+02 0.013 23.2 9.5 77 109-204 92-168 (308)
89 COG1173 DppC ABC-type dipeptid 21.8 5.6E+02 0.012 23.5 8.1 71 100-173 69-145 (289)
90 COG4709 Predicted membrane pro 21.7 4.5E+02 0.0097 23.8 7.2 25 113-137 77-101 (195)
91 PF13829 DUF4191: Domain of un 21.4 2E+02 0.0042 26.3 5.0 53 167-222 12-65 (224)
92 KOG2927 Membrane component of 21.1 2.2E+02 0.0047 28.0 5.5 16 174-190 210-225 (372)
93 PF11239 DUF3040: Protein of u 21.1 3.5E+02 0.0077 20.0 7.2 50 153-205 14-63 (82)
94 PF13858 DUF4199: Protein of u 21.0 4.3E+02 0.0093 21.0 8.9 44 108-151 57-104 (163)
95 KOG2881 Predicted membrane pro 20.4 3E+02 0.0066 26.2 6.2 35 159-198 82-116 (294)
96 COG2836 Uncharacterized conser 20.1 3E+02 0.0066 25.4 5.9 41 181-223 54-94 (232)
97 PF10734 DUF2523: Protein of u 20.0 3.7E+02 0.008 19.9 8.7 73 115-197 8-80 (83)
No 1
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=100.00 E-value=2.8e-40 Score=298.64 Aligned_cols=116 Identities=47% Similarity=0.763 Sum_probs=114.1
Q ss_pred cchhhhhhhHHHHHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHH
Q 027299 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG 189 (225)
Q Consensus 110 ~~~s~KeAl~ws~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~G 189 (225)
.++++|||+.||++|+++|++||+++|++.|.+++.||+|||++|++||+||+|||++||++|++|+++|||+|+|||+|
T Consensus 28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g 107 (302)
T TIGR03718 28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG 107 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299 190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 190 AiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK 225 (225)
|++||++||++|++++++|+|++|+||+||+|+|+|
T Consensus 108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k 143 (302)
T TIGR03718 108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIK 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986
No 2
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=99.89 E-value=2.8e-23 Score=175.02 Aligned_cols=76 Identities=37% Similarity=0.572 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 148 ltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK 225 (225)
+|+|++|++||+||++|++++++ ++|+++|+|+++||++||+++|++|++.|+++++.|+|++++||++|+|+|+|
T Consensus 1 ltl~~lE~~Ls~DN~~vi~~~~~--~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k 76 (183)
T PF03741_consen 1 LTLVLLEIVLSIDNAFVIAMIFR--KLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIK 76 (183)
T ss_pred CchhhhhHHHHhhHHHHHHHHHh--CCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999 59999999999999999999999999999999988899999999999999986
No 3
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.8e-23 Score=182.53 Aligned_cols=93 Identities=26% Similarity=0.367 Sum_probs=85.9
Q ss_pred HhhhhhheeCchhHH--HHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027299 131 FGLGVGFIEGASKAS--EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF 208 (225)
Q Consensus 131 Fg~~I~~~~G~~~a~--eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f 208 (225)
|+...|+..+.+.+. +|+|+|++|++||+||++|++++++ ++|++|||||++||+.||+++|+++++.|+++++.+
T Consensus 2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~--~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~ 79 (254)
T COG0861 2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILAS--KLPPKQRKKALFIGLAGALVLRIILLASISWLLTLT 79 (254)
T ss_pred chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677776666665 9999999999999999999999999 678999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcC
Q 027299 209 EAVNLVLAGILLFSSFK 225 (225)
Q Consensus 209 ~wv~~iFGa~LI~tgiK 225 (225)
+|++++||++|+|+++|
T Consensus 80 ~~l~~~fg~~L~~~~~~ 96 (254)
T COG0861 80 QPLLYIFGLYLLWRDIK 96 (254)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999875
No 4
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=99.85 E-value=1.8e-21 Score=169.00 Aligned_cols=71 Identities=34% Similarity=0.531 Sum_probs=67.9
Q ss_pred HHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 152 llE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK 225 (225)
++|++||+||++|++++++ ++|+++|+|+++||++||+++|++|+++|+++++ ++|++++||++|+|+|+|
T Consensus 2 ~lE~vLS~DN~~via~~~~--~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~~l~~iGG~~Ll~~~~k 72 (215)
T TIGR03716 2 ILEGLLSADNALVLAVMVK--HLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FWWIKAIGALYLLYLAIK 72 (215)
T ss_pred chhHHHHhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5899999999999999988 7999999999999999999999999999999995 779999999999999976
No 5
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=99.74 E-value=7.8e-18 Score=141.54 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 147 FltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK 225 (225)
+++-.++|.+||+||++|+++ .++++|+++|||++.||+++|+++|++|+++|.++++ ++|++++||++|+|+|+|
T Consensus 2 ~~~li~le~vLs~DN~~vi~~--~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~ 77 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIAL--AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWK 77 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence 467789999999999999998 4679999999999999999999999999999999996 899999999999999975
No 6
>PRK14013 hypothetical protein; Provisional
Probab=99.07 E-value=1.5e-09 Score=100.80 Aligned_cols=101 Identities=25% Similarity=0.246 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHH-HHHHH
Q 027299 118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLS 196 (225)
Q Consensus 118 l~ws~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAi-VfR~i 196 (225)
.+||.++-.++++-+.+++ |.+.....++--++|.+||.||++|.+.+.+ +.|++.|+|.|.||++.|+ .||++
T Consensus 6 f~~s~~~t~~~l~~~~~~g---~~~~~~~~~~L~vLEisLsfDNaIvnA~vl~--~m~~~wq~~fl~~Gi~iAvFgmRlv 80 (338)
T PRK14013 6 FRWSFIVTVIGLVLAAWLG---GLSALFIVAILAVLEISLSFDNAVVNATVLK--RMSPKWQKRFLTWGILIAVFGMRLV 80 (338)
T ss_pred HhHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655544443 3466777888889999999999999999998 8999999999999999998 99999
Q ss_pred HHHHHHHHHhhh------------------------hHHHHHHHHHHHHhh
Q 027299 197 LILLGTATLQRF------------------------EAVNLVLAGILLFSS 223 (225)
Q Consensus 197 fI~lG~~Ll~~f------------------------~wv~~iFGa~LI~tg 223 (225)
|-++-+++...- +-+...||.||+..+
T Consensus 81 fp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvf 131 (338)
T PRK14013 81 FPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVF 131 (338)
T ss_pred HHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999888776421 245567788887654
No 7
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=1.3e-05 Score=74.50 Aligned_cols=89 Identities=28% Similarity=0.339 Sum_probs=70.3
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhheeCchhHHH-HHHH--HHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHH
Q 027299 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASE-FFAG--YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA 190 (225)
Q Consensus 114 ~KeAl~ws~~wI~LAllFg~~I~~~~G~~~a~e-FltG--yllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GA 190 (225)
..+-..|+.+.-.++++-+.|..|.+|.....- |+.. -++|.|||-||++|=+-|.+ +..+.-|||-|.|||+.|
T Consensus 3 ~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk--~MS~~Wqk~FLT~GIlIA 80 (346)
T COG2899 3 AFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILK--DMSPFWQKRFLTWGILIA 80 (346)
T ss_pred hHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHH--hccHHHHHHHHHHHHHHH
Confidence 344567888888889988888888776544444 4333 46899999999999999998 667899999999999988
Q ss_pred HH-HHHHHHHHHHHH
Q 027299 191 IV-FRLSLILLGTAT 204 (225)
Q Consensus 191 iV-fR~ifI~lG~~L 204 (225)
+. ||++|=++-+++
T Consensus 81 VFGMRlvFPl~IV~v 95 (346)
T COG2899 81 VFGMRLVFPLVIVAV 95 (346)
T ss_pred HHhhHHHHHHHHHHH
Confidence 75 899987766554
No 8
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=96.70 E-value=0.011 Score=50.40 Aligned_cols=66 Identities=24% Similarity=0.272 Sum_probs=49.0
Q ss_pred HHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG-AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 151 yllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~G-AiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK 225 (225)
-+.+.+.|.||+...+.+- .+--++..|.+- ...+|...-.+. .++++|+|+.+.++++|.|+|.|
T Consensus 113 ~~~DlvfSlDSV~a~~~it--------~~~~iv~~g~i~si~~m~~~~~~~~-~~l~~~p~l~~~~~~~L~~ig~~ 179 (183)
T PF03741_consen 113 ELADLVFSLDSVLAAVGIT--------DDFFIVITGNIISILLMRFLSFLLA-KLLERFPYLKYLAAAILGFIGVK 179 (183)
T ss_pred HHHHHHHHHhHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999888654 344455555544 455666555554 57789999999999999999975
No 9
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=95.91 E-value=0.052 Score=46.19 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299 149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 149 tGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAi-VfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK 225 (225)
..-+.+.+.|.||+.....+.+ .+-.++..|++-++ ++|..-- .=..++++|+|+.+.++++|.|+|.|
T Consensus 102 ~I~~~D~~fS~DsV~a~~~~~~-------~~~~li~~g~~i~i~~m~~~s~-~~~~~~~~~p~l~~~~~~~L~~ig~k 171 (176)
T TIGR03717 102 TIVIADAVMSLDNVLAVAGAAH-------GHLGLLIFGLLLSIPIIVWGST-LILKLMDRFPWIIYIGAALLGYVAGE 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999998765442 23345555554443 4444433 34457789999999999999999976
No 10
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=95.91 E-value=0.046 Score=48.29 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=50.8
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299 149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYG-IAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 149 tGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~G-I~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK 225 (225)
+.-+.+.+.|.||+...+.+- .+.-+.+.| +++.+++|..-.++ ..++++|+|+.+.++++|.|+|.|
T Consensus 101 ~I~~~DlvFSlDSV~A~~git--------~~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~k 169 (215)
T TIGR03716 101 KVELMDIAFSVDSILAAVALS--------GQFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGVK 169 (215)
T ss_pred HHHHHHHHHHhhhHHHHHHhc--------cChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999888642 223344444 55566777777666 457899999999999999999975
No 11
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.062 Score=48.56 Aligned_cols=66 Identities=26% Similarity=0.304 Sum_probs=50.6
Q ss_pred HHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 151 yllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAi-VfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK 225 (225)
-+++.+-|.||+...+.+. .+.-+.+.|.+-|+ +||...-.++ .+++||+++.|...++|+|+|.|
T Consensus 141 ~i~D~vFSlDSV~Aa~g~~--------~~~~im~~a~i~aI~~m~~aa~~l~-~ll~r~p~l~~~~~~iL~~IG~k 207 (254)
T COG0861 141 ELADLVFSLDSVIAAVGMA--------GHPFVMVTAVIFAILVMRFAAFLLA-RLLERHPTLKYLALVILLFIGVK 207 (254)
T ss_pred HHHHHHHhhhHHHHHHHHh--------cCchHHHHHHHHHHHHHHHHHHHHH-HHHHHchHHHHHHHHHHHHHHHH
Confidence 4678999999999887655 44556666665554 5666655554 47799999999999999999975
No 12
>PRK10995 inner membrane protein; Provisional
Probab=94.73 E-value=0.14 Score=44.40 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=56.2
Q ss_pred chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhcC
Q 027299 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFK 225 (225)
Q Consensus 159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgiK 225 (225)
..|+-+|..+.+ +.++++|+|+.....+-|.+.=.++.+.|..+++.| ++++..+|++|++.|++
T Consensus 22 ~g~~pif~~lt~--~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ 90 (221)
T PRK10995 22 LTTVALFLGLSG--NMTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFR 90 (221)
T ss_pred hhhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 467888887766 778999999999999999999999999999999754 57899999999999874
No 13
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=93.91 E-value=0.16 Score=47.42 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=39.4
Q ss_pred chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 027299 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQ 206 (225)
Q Consensus 159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAi-VfR~ifI~lG~~Ll~ 206 (225)
-||++|=|-+.+ +-.+.-|+|-|.|||+.|+ .||++|=++-+++-.
T Consensus 1 FDNAVVNA~vLk--~Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a 47 (294)
T PF04332_consen 1 FDNAVVNATVLK--RMSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTA 47 (294)
T ss_pred CCchhhhHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 399999999888 5568999999999999997 489999888777654
No 14
>PRK09304 arginine exporter protein; Provisional
Probab=93.18 E-value=0.69 Score=39.06 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhhhhHH----HHHHHHHHHH
Q 027299 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFEAV----NLVLAGILLF 221 (225)
Q Consensus 147 FltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~-Ll~~f~wv----~~iFGa~LI~ 221 (225)
++-|+.+-..-.-||++|+..=.+ . ...-....|+..+.++=......|.. +++.++|+ ++++++||+|
T Consensus 9 ~~~g~~~~~tPGP~~~~v~~~~~~-----~-~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly 82 (207)
T PRK09304 9 FALGAAMILPLGPQNAFVMNQGIR-----R-QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW 82 (207)
T ss_pred HHHHHHHHhccChHHHHHHHHHHc-----c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566789888874222 1 12334556666666666666666764 46676665 7789999999
Q ss_pred hhcC
Q 027299 222 SSFK 225 (225)
Q Consensus 222 tgiK 225 (225)
.|+|
T Consensus 83 Lg~~ 86 (207)
T PRK09304 83 YGFG 86 (207)
T ss_pred HHHH
Confidence 9985
No 15
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=92.87 E-value=0.53 Score=40.75 Aligned_cols=66 Identities=14% Similarity=0.293 Sum_probs=56.5
Q ss_pred cchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhcC
Q 027299 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFK 225 (225)
Q Consensus 158 SvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgiK 225 (225)
-..|+-+|..+.+ +.++++|+|+.....+-|.+.=.+|.+.|-++++.| +-++..+|++|..+|++
T Consensus 20 Pig~ipvfl~lt~--~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ 89 (201)
T TIGR00427 20 PIGNIPIFISLTE--YYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMD 89 (201)
T ss_pred cchHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4578889988777 789999999999999999999999999999999755 45688899999888764
No 16
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=92.26 E-value=0.72 Score=39.83 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=56.0
Q ss_pred chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhcC
Q 027299 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFK 225 (225)
Q Consensus 159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgiK 225 (225)
..|+.+|+-+.+ +.++++|+|+..-..+-|.+.=.+|.++|.++++.| +-++..+|++|...|++
T Consensus 18 ~g~ip~f~~lt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ 86 (203)
T PF01914_consen 18 IGNIPIFLSLTK--GMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALE 86 (203)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 468888888777 778999999999999999999999999999999865 35688899999888763
No 17
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=91.45 E-value=0.74 Score=42.89 Aligned_cols=66 Identities=27% Similarity=0.348 Sum_probs=50.7
Q ss_pred HHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 152 llE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK 225 (225)
+.+.+-|+||+.....+-+ + | --+..-++++-+.+|....+++ .++++|+++.|..+++|.++|.|
T Consensus 200 ~~DlvFslDSIpAi~aiT~--d-~----~iV~tsnifaIlgLR~lyf~l~-~ll~rf~~L~~~~a~iL~fIGvk 265 (302)
T TIGR03718 200 TTDLIFAVDSIPAIFAITQ--D-P----FIVFTSNIFAILGLRSLYFLLA-GLLERFHYLKYGLAVILVFIGVK 265 (302)
T ss_pred HHHHHHhhccHHHHHHhhc--C-C----eEEehHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHH
Confidence 5788999999998886543 1 1 1334455667777999877655 46799999999999999999986
No 18
>PRK11111 hypothetical protein; Provisional
Probab=91.21 E-value=1 Score=39.50 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=54.6
Q ss_pred chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhcC
Q 027299 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFK 225 (225)
Q Consensus 159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgiK 225 (225)
..|+-+|..+.+ +.++++|+|+.....+-|.+.=.+|.++|-++++-| +-.+..||++|...|++
T Consensus 24 ig~ipiflslt~--~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~ 92 (214)
T PRK11111 24 VGILPVFISMTS--HQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMS 92 (214)
T ss_pred chhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 568888887776 678899999999999999999999999999999755 45688899999888764
No 19
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=91.20 E-value=2.3 Score=35.73 Aligned_cols=62 Identities=10% Similarity=0.015 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHhhcCCChhhhhh--hHHHHHHHHHHHHHHHHHHHH-HHHhhhhHH----HHHHHHHHHHhhcC
Q 027299 158 SVDNLFVFVLIFKYFKVPVMYQNR--VLSYGIAGAIVFRLSLILLGT-ATLQRFEAV----NLVLAGILLFSSFK 225 (225)
Q Consensus 158 SvDNafVfalIF~~F~VP~~~Q~R--vL~~GI~GAiVfR~ifI~lG~-~Ll~~f~wv----~~iFGa~LI~tgiK 225 (225)
.-||++|+..=.+ .-.++ ....|+..+...=.++...|. .+++.++|+ ++++++||+|.|+|
T Consensus 21 GP~~~~v~~~~~~------~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~ 89 (195)
T PRK10323 21 GPNNILALSSATS------HGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWK 89 (195)
T ss_pred ChHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888874222 11222 245566666666555555666 566666654 78999999999986
No 20
>PRK10739 putative antibiotic transporter; Provisional
Probab=91.09 E-value=1.1 Score=38.94 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=54.9
Q ss_pred chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhc
Q 027299 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSF 224 (225)
Q Consensus 159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgi 224 (225)
..|+-+|..+.+ +.++++|+|+..-..+-|.+.=.+|.+.|-.+++.| +-++..||++|...|+
T Consensus 18 ig~ipiflslt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial 85 (197)
T PRK10739 18 LGNLPIFMSVLK--HLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAI 85 (197)
T ss_pred hhHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 568888988777 778999999999999999999999999999999765 3568889999988876
No 21
>TIGR00948 2a75 L-lysine exporter.
Probab=91.05 E-value=1.2 Score=36.36 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=39.5
Q ss_pred chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhh----hhHHHHHHHHHHHHhhcC
Q 027299 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQR----FEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~-Ll~~----f~wv~~iFGa~LI~tgiK 225 (225)
-||++|+..-.+. + .--....|+..+...=+++..+|.. +++. +.++++++|+||+|.|+|
T Consensus 7 P~~~~vi~~~~~~-----~-~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~ 72 (177)
T TIGR00948 7 AQNAFVLRQGIRR-----E-HVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFL 72 (177)
T ss_pred chHHHHHHHHHcc-----c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888854431 1 1223455666666666666666665 5544 446689999999999985
No 22
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=89.96 E-value=1.2 Score=39.01 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=56.8
Q ss_pred cchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhcC
Q 027299 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFK 225 (225)
Q Consensus 158 SvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgiK 225 (225)
...|+-+|..+.+ +.|+++|+|+..-..+-|.+.=.+|.++|.++++-| +-....+|++|.+.|++
T Consensus 20 P~G~ipvf~slt~--~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ 89 (203)
T COG2095 20 PIGNLPVFISLTK--GLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALR 89 (203)
T ss_pred CCchhHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHH
Confidence 5679999998777 889999999999999999999999999999999744 35688899999888763
No 23
>PRK10229 threonine efflux system; Provisional
Probab=89.41 E-value=1.9 Score=35.96 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=40.8
Q ss_pred HHHHHhcchhHHHHHHHHhhcCCChhhhhhhHH---HHHHHHHHHHHHHHHHHH-HHHhhhh----HHHHHHHHHHHHhh
Q 027299 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLS---YGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSS 223 (225)
Q Consensus 152 llE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~---~GI~GAiVfR~ifI~lG~-~Ll~~f~----wv~~iFGa~LI~tg 223 (225)
++..+=.-||++|+..=. ++.+|.-. .|+.-+..+=.++..+|. .++++++ .+++++++||+|.|
T Consensus 14 ~~~~sPGP~~~~vi~~~~-------~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg 86 (206)
T PRK10229 14 VALMSPGPDFFFVSQTAV-------SRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMG 86 (206)
T ss_pred HHhcCCCchhHHHHHHHH-------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444455568888877422 23344444 444445555555555676 4555555 55789999999999
Q ss_pred cC
Q 027299 224 FK 225 (225)
Q Consensus 224 iK 225 (225)
+|
T Consensus 87 ~~ 88 (206)
T PRK10229 87 YQ 88 (206)
T ss_pred HH
Confidence 75
No 24
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=85.43 E-value=4.3 Score=34.73 Aligned_cols=69 Identities=28% Similarity=0.317 Sum_probs=39.3
Q ss_pred HHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHhh----hhHHHHHHHHHHHHhhcC
Q 027299 153 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 153 lE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~-~Ll~~----f~wv~~iFGa~LI~tgiK 225 (225)
+-.+=.-||++|+.-=.+. + ..+--..-.|+.-+.+.=.++..+|. .++.. |..+++++++||+|.|+|
T Consensus 16 ~~~~PGP~~~~v~~~~~~~-G---~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~ 89 (208)
T COG1280 16 LAATPGPDNLLVLARSLSR-G---RRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWK 89 (208)
T ss_pred HhcCCCccHHHHHHHHHHh-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456888887742220 0 11112233444444555555566663 45544 456689999999999985
No 25
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=85.32 E-value=2.8 Score=35.00 Aligned_cols=64 Identities=9% Similarity=0.110 Sum_probs=37.3
Q ss_pred HhcchhHHHHHHHHhhcCCChhhhhhhH--HHHHHHHHHHHHHHHHHHHH-HHhhhh----HHHHHHHHHHHHhhcC
Q 027299 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSFK 225 (225)
Q Consensus 156 sLSvDNafVfalIF~~F~VP~~~Q~RvL--~~GI~GAiVfR~ifI~lG~~-Ll~~f~----wv~~iFGa~LI~tgiK 225 (225)
+=.-||+.|+.-=.+ .-+++.+ ..|+.-+...=.++..+|.. +++.++ .+++++++||+|.|+|
T Consensus 19 sPGP~~~~v~~~~~~------~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~ 89 (205)
T PRK10520 19 SPGSGAINTMSTSIS------HGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQ 89 (205)
T ss_pred CCchhHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777763221 2222322 23555555555555556654 555544 5578999999999985
No 26
>PRK10958 leucine export protein LeuE; Provisional
Probab=84.90 E-value=4.9 Score=34.26 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=38.3
Q ss_pred HhcchhHHHHHHHHhhcCCChhhhhhhH--HHHHHHHHHHHHHHHHHHHH-HHhh----hhHHHHHHHHHHHHhhcC
Q 027299 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTA-TLQR----FEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 156 sLSvDNafVfalIF~~F~VP~~~Q~RvL--~~GI~GAiVfR~ifI~lG~~-Ll~~----f~wv~~iFGa~LI~tgiK 225 (225)
+=.-||++|+..=.+ +-+++.+ ..|+..+.+.=++....|.. +++. +..+++++|+||+|.|+|
T Consensus 23 sPGP~~~~v~~~~~~------~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~ 93 (212)
T PRK10958 23 LPGPNSLYVLSTAAR------RGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVK 93 (212)
T ss_pred CCchHHHHHHHHHHh------hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345688888874222 2223333 33555555555555556664 4434 445689999999999975
No 27
>PRK11469 hypothetical protein; Provisional
Probab=83.25 E-value=9.8 Score=32.73 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhhhhee----Cc-h------hHHHHHHHHHHHHHhcchhHHH-HHHHHhhcCCChhhhhhhHHHHHHHH
Q 027299 123 FCVSTAVAFGLGVGFIE----GA-S------KASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA 190 (225)
Q Consensus 123 ~wI~LAllFg~~I~~~~----G~-~------~a~eFltGyllE~sLSvDNafV-falIF~~F~VP~~~Q~RvL~~GI~GA 190 (225)
=|++..+++.+++|... +. + .-..+....++=.++|.||+-| +.+ +..++| .-.-++..|+...
T Consensus 70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~--~~~g~~--~~~~~~~ig~~s~ 145 (188)
T PRK11469 70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGL--AFLQVN--IIATALAIGCATL 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHH--HHhhhh--HHHHHHHHHHHHH
Confidence 48888888888888532 11 1 1134556677777999999998 443 433543 2233455555544
Q ss_pred HHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHhhcC
Q 027299 191 IVFRLSLILLGTATLQR-----FEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 191 iVfR~ifI~lG~~Ll~~-----f~wv~~iFGa~LI~tgiK 225 (225)
+ ++.+|.++=++ -.|..+++|++|+..|+|
T Consensus 146 ~-----~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~ 180 (188)
T PRK11469 146 I-----MSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQ 180 (188)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 33344332211 136889999999999875
No 28
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=82.82 E-value=4.4 Score=32.99 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhhhH----HHHHHHHHHHHhhcC
Q 027299 184 SYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSFK 225 (225)
Q Consensus 184 ~~GI~GAiVfR~ifI~lG~-~Ll~~f~w----v~~iFGa~LI~tgiK 225 (225)
..|+..+.+.=+++...|+ .+++.+++ +++++|+||+|.|++
T Consensus 25 ~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~ 71 (185)
T TIGR00949 25 ILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIK 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555655 35555554 688999999999974
No 29
>COG1971 Predicted membrane protein [Function unknown]
Probab=80.13 E-value=19 Score=31.89 Aligned_cols=100 Identities=18% Similarity=0.126 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhhhhhee----Cchh--------HH-HHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHH
Q 027299 122 AFCVSTAVAFGLGVGFIE----GASK--------AS-EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA 188 (225)
Q Consensus 122 ~~wI~LAllFg~~I~~~~----G~~~--------a~-eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~ 188 (225)
.=|++-+++..+++|.-. +.+. .. .|.+-.++-.+.|.||+-|=+- ++ .++-.-+.-+...|++
T Consensus 69 ~~wigf~lL~~lG~~mI~e~f~~~~~~~~~~~~~~~~~~~~~~~laiatSidal~vG~~-~a--~lgv~i~~~av~iG~~ 145 (190)
T COG1971 69 AHWIGFVLLIILGLKMIIEGFKNEEDEFVDPAEKHDLNFKELILLAIATSIDALAVGVG-LA--FLGVNILLAAVAIGLI 145 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhcchhcccccchhhHHHHHHHHHHHHHHHHHHhhh-HH--HhcchHHHHHHHHHHH
Confidence 447777788877777532 2221 21 2778889999999999988763 23 3556677778888854
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhcC
Q 027299 189 GAIVFRLSLILLGTATLQRF-EAVNLVLAGILLFSSFK 225 (225)
Q Consensus 189 GAiVfR~ifI~lG~~Ll~~f-~wv~~iFGa~LI~tgiK 225 (225)
-.+ +=.+-..+|-.+-+.+ .|..+++|++|+..|.|
T Consensus 146 T~i-l~~~G~~IG~~~g~~~g~~ae~lgGiiLI~~G~~ 182 (190)
T COG1971 146 TLI-LSALGAIIGRKLGKFLGKYAEILGGIILIGIGVK 182 (190)
T ss_pred HHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 322 1111222222222111 36788899999887754
No 30
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=78.82 E-value=7.8 Score=33.88 Aligned_cols=65 Identities=22% Similarity=0.390 Sum_probs=43.5
Q ss_pred cchhHHHHHHHHhhcCCChhhhhhhHHHH-HHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYG-IAGAIVFRLSLIL--LGTATLQRFEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 158 SvDNafVfalIF~~F~VP~~~Q~RvL~~G-I~GAiVfR~ifI~--lG~~Ll~~f~wv~~iFGa~LI~tgiK 225 (225)
..|.++|++..|+. .+...|+|-..+| .+|..++=.+-.+ .|..++ -=+|+.-+.|++=++.|+|
T Consensus 5 niDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~i-p~~wiLGlLGliPI~lGi~ 72 (191)
T PF03596_consen 5 NIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFI-PPEWILGLLGLIPIYLGIK 72 (191)
T ss_pred cHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHH
Confidence 57999999999994 4455567777777 5555444433333 333333 1258888899999998875
No 31
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=72.58 E-value=31 Score=24.33 Aligned_cols=65 Identities=23% Similarity=0.155 Sum_probs=32.8
Q ss_pred hcchhHHHHHHHHhhcCCChh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhh
Q 027299 157 LSVDNLFVFVLIFKYFKVPVM-YQNRVLSYGIAGAIVFRLSLILLGTATLQRF-EAVNLVLAGILLFSS 223 (225)
Q Consensus 157 LSvDNafVfalIF~~F~VP~~-~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f-~wv~~iFGa~LI~tg 223 (225)
||.|+..|=.. +...+++.+ .=.-++..|+.-.+..-+ -..+|..+-+.+ +|..+++|++|+..|
T Consensus 1 lSiDaf~vg~~-~g~~~~~~~~~~~~~~~ig~~~~~~~~~-G~~~G~~~~~~~~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 1 LSIDAFAVGIS-YGLRGISRRIILLIALIIGIFQFIMPLL-GLLLGRRLGRFIGSYAEWIGGIILIFIG 67 (67)
T ss_pred CcHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 68888877553 232244411 112234444443333322 223344443322 367899999998765
No 32
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=72.17 E-value=9.8 Score=30.93 Aligned_cols=60 Identities=25% Similarity=0.191 Sum_probs=34.6
Q ss_pred chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHhh-----hhHHHHHHHHHHHHhhcC
Q 027299 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLS---LILLGTATLQR-----FEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~i---fI~lG~~Ll~~-----f~wv~~iFGa~LI~tgiK 225 (225)
-+|++|+-.=. ++..|.-+..++|+.+.=.+ +...|...+-+ +.++++++|+||+|.|++
T Consensus 9 P~~~~~i~~~~-------~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~ 76 (191)
T PF01810_consen 9 PVNLLVISNGL-------RKGFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYK 76 (191)
T ss_pred HHHHHHHHHHH-------HhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 46777766322 23344444445555444444 34444444422 456789999999999974
No 33
>COG1971 Predicted membrane protein [Function unknown]
Probab=71.46 E-value=29 Score=30.81 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHH
Q 027299 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE-----AVNLVLAGILL 220 (225)
Q Consensus 146 eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~-----wv~~iFGa~LI 220 (225)
++++-.++-.++|.||.-|=.. ....+.+++.++ +|..|+.-. ++-+++-++|..+=+.++ |-.++++++|+
T Consensus 2 ~~~sllllA~alsmDAFav~l~-~G~~~~k~~~~~-~L~ia~~fG-~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~ 78 (190)
T COG1971 2 NIISLLLLAIALSMDAFAVSLG-KGLAKHKIRFKE-ALVIALIFG-VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLI 78 (190)
T ss_pred cHHHHHHHHHHHhhHHHHHHHH-hhhhhccccHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999766542 233333333333 444444433 245566666655433333 66777888887
Q ss_pred Hhhc
Q 027299 221 FSSF 224 (225)
Q Consensus 221 ~tgi 224 (225)
+.|.
T Consensus 79 ~lG~ 82 (190)
T COG1971 79 ILGL 82 (190)
T ss_pred HHHH
Confidence 7764
No 34
>COG1279 Lysine efflux permease [General function prediction only]
Probab=70.90 E-value=26 Score=31.45 Aligned_cols=67 Identities=21% Similarity=0.186 Sum_probs=43.3
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHhhhhHH----HHHHHHHHHH
Q 027299 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT----ATLQRFEAV----NLVLAGILLF 221 (225)
Q Consensus 150 GyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~----~Ll~~f~wv----~~iFGa~LI~ 221 (225)
|.-+=..+.+.|+||+-.= -.|+++|.. ++-+.+.=+++|.+|+ .++++-+|+ .+.|.+||+|
T Consensus 12 ~~~LI~pIGaQNaFVl~QG--------i~r~~~l~~-~~~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~ 82 (202)
T COG1279 12 GASLILPIGAQNAFVLNQG--------IRREYVLPI-ALLCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLY 82 (202)
T ss_pred HHHHHHhccchhHHHHHHH--------HhhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3334456789999999842 223555554 3445556666666554 456666765 5678899999
Q ss_pred hhcC
Q 027299 222 SSFK 225 (225)
Q Consensus 222 tgiK 225 (225)
.|++
T Consensus 83 yg~~ 86 (202)
T COG1279 83 YGLL 86 (202)
T ss_pred HHHH
Confidence 8863
No 35
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=69.96 E-value=56 Score=28.33 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcchhHHH-HHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHH
Q 027299 147 FFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR-------FEAVNLVLAGI 218 (225)
Q Consensus 147 FltGyllE~sLSvDNafV-falIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~-------f~wv~~iFGa~ 218 (225)
+.....+=.++|.||+.| +.+ +..+++.- .-++..|+ .=++++.+|.++=++ -.|. +++|++
T Consensus 128 ~~e~l~L~iAlSiDalavG~s~--~~~g~~~~--~~~~~igi-----vs~i~~~~G~~lG~~~~~~~~~g~~a-~igGli 197 (206)
T TIGR02840 128 GKEALLLGIALSLDAFGAGIGA--SLLGLNPL--ATSILVAV-----MSFIFVSLGLFLGKKISKKSIIGKFS-FLSGIL 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhCccHH--HHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhccchH-HHHHHH
Confidence 456677888999999998 443 44455421 12333443 344555555555222 1455 899999
Q ss_pred HHHhhcC
Q 027299 219 LLFSSFK 225 (225)
Q Consensus 219 LI~tgiK 225 (225)
|+..|+|
T Consensus 198 LI~iG~~ 204 (206)
T TIGR02840 198 LILLGVW 204 (206)
T ss_pred HHHHHHh
Confidence 9999875
No 36
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=62.81 E-value=51 Score=28.57 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=42.8
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-h-HHHHHHHHHHHHhhcC
Q 027299 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFK 225 (225)
Q Consensus 150 GyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f-~-wv~~iFGa~LI~tgiK 225 (225)
..++=.+||.|+..|=.. ....+++. .-+.++..|++-+ +|=.+-.++|..+-+.+ + |-.++++++|++.|.|
T Consensus 3 i~llaials~Daf~vgi~-~G~~~~~~-~~~~~l~ig~~~~-~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~ 77 (206)
T TIGR02840 3 LLLLAFAVSLDSFGVGIA-YGLRKIKI-PFLSNLIIAVISG-LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIW 77 (206)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhcCCh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 345677899999988543 23334322 2334455555544 33334444555555433 2 5678999999988853
No 37
>TIGR00901 2A0125 AmpG-related permease.
Probab=59.81 E-value=1.1e+02 Score=26.20 Aligned_cols=56 Identities=7% Similarity=-0.191 Sum_probs=33.7
Q ss_pred HHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027299 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (225)
Q Consensus 152 llE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~ 209 (225)
++...-+..+..+-+++-.. .|+++|.++.-+-..|.-+.-++.-.++..+.+.+.
T Consensus 92 ~~~~~~~~~~~~~~a~~~~~--~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 92 LIAFFSATQDIALDAWRLEI--LSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44444455556666665553 478888887766655655555555556666665543
No 38
>PRK11469 hypothetical protein; Provisional
Probab=57.86 E-value=87 Score=26.97 Aligned_cols=76 Identities=13% Similarity=0.013 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHH
Q 027299 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNR----VLSYGIAGAIVFRLSLILLGTATLQRFE-AVNLVLAGILL 220 (225)
Q Consensus 146 eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~R----vL~~GI~GAiVfR~ifI~lG~~Ll~~f~-wv~~iFGa~LI 220 (225)
++++..++=.+||+||.-|=... ... .++..-++ ++.+|.+-++. =.+-.++|..+-+..+ |-..+++++|+
T Consensus 2 ~~~~i~llaialsmDaF~v~ia~-G~~-~~~~~~~~~~~~~l~~g~~q~~m-~~~g~~~G~~l~~~i~~~~~~i~~~lL~ 78 (188)
T PRK11469 2 NITATVLLAFGMSMDAFAASIGK-GAT-LHKPKFSEALRTGLIFGAVETLT-PLIGWGMGMLASRFVLEWNHWIAFVLLI 78 (188)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh-hhc-ccCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999998876642 211 23333344 34444433221 1222224443332222 44566666666
Q ss_pred Hhhc
Q 027299 221 FSSF 224 (225)
Q Consensus 221 ~tgi 224 (225)
+.|.
T Consensus 79 ~lG~ 82 (188)
T PRK11469 79 FLGG 82 (188)
T ss_pred HHHH
Confidence 6654
No 39
>PF06541 DUF1113: Protein of unknown function (DUF1113); InterPro: IPR010540 This family consists of several bacterial proteins of unknown function.
Probab=55.77 E-value=79 Score=26.22 Aligned_cols=53 Identities=28% Similarity=0.496 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhh-----hHHHHHHHHHHHHHHHHHHHH
Q 027299 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNR-----VLSYGIAGAIVFRLSLILLGT 202 (225)
Q Consensus 143 ~a~eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~R-----vL~~GI~GAiVfR~ifI~lG~ 202 (225)
.+.||+||+++|+.+... .-.|=+.|-..|-| .+.||++|-+..|.+-=.+-.
T Consensus 70 t~lEyi~g~~le~~~~~~-------~WDYS~~~~n~~G~Icl~~s~~wg~l~~~~~~~i~P~~~~ 127 (157)
T PF06541_consen 70 TALEYITGWILEKLFGAR-------WWDYSDLPFNIQGRICLPFSLFWGLLGLLFVKVIHPLLFK 127 (157)
T ss_pred HHHHHHHHHHHHHHHCCc-------cCcCCCCcCCcCCEehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999986543 12344555555544 789999999999988665543
No 40
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=55.59 E-value=83 Score=30.97 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHh--------cchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHH
Q 027299 143 KASEFFAGYILEQSL--------SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF 193 (225)
Q Consensus 143 ~a~eFltGyllE~sL--------SvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVf 193 (225)
-..-+.++.+.|... + |.++|-+++++ +.+|+.----+...|++-|+++
T Consensus 125 ~~vs~~~a~~~E~l~~~~r~~~~~-dsa~VTglLla-l~LPp~~P~W~~~iG~~fAIvi 181 (413)
T TIGR01937 125 LLVSYAVGGTWEVLFAVVRKHEIN-EGFLVTGILFP-LIVPPTIPLWMAALGIAFGVVV 181 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHH-HHCCCCchHHHHHHHHHHHHHH
Confidence 355567777777442 3 77777777776 4788887777777777777766
No 41
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=52.73 E-value=85 Score=30.86 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHh-------cchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHH
Q 027299 144 ASEFFAGYILEQSL-------SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF 193 (225)
Q Consensus 144 a~eFltGyllE~sL-------SvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVf 193 (225)
+.-+.++.+.|... .-|.++|-+++++ +.+|+.----+...|++-|+++
T Consensus 125 ~vs~~~a~~~E~l~~~~r~k~~~dga~VTglLla-l~LPp~~P~W~vviG~~fAIvi 180 (405)
T PRK05349 125 LVSFIVGGFWEVLFAVVRGHEVNEGFFVTSILFA-LILPPTIPLWQVALGISFGVVI 180 (405)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHH-HHCCCCchHHHHHHHHHHHHHH
Confidence 45566777777442 2566677776665 4778887777777777777665
No 42
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=51.52 E-value=90 Score=22.52 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=44.3
Q ss_pred HhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHHHHhhc-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 027299 131 FGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF-KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF- 208 (225)
Q Consensus 131 Fg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfalIF~~F-~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f- 208 (225)
+.+..++..+.+.+ -|.++=...|.=|.+.++.....+ +--.+.++++...-.. ....|.+++.+...+.-++
T Consensus 13 ~~~~~~~~~~~~~~----~s~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~R~~l~~~~~~~~~~~~ 87 (100)
T PF03899_consen 13 LALVFFLFFGWPVA----LSFLLGGLISLLNFFLLARRVFRLAGALAMDPGRAVRAMYL-GYFIRLALTILLFILAFKFP 87 (100)
T ss_pred HHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455544 445555566777999988655211 1111123444443333 4889999998888877666
Q ss_pred hHHHH
Q 027299 209 EAVNL 213 (225)
Q Consensus 209 ~wv~~ 213 (225)
+++..
T Consensus 88 ~~~~~ 92 (100)
T PF03899_consen 88 PELNP 92 (100)
T ss_pred cccHH
Confidence 44443
No 43
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=50.63 E-value=2.9e+02 Score=28.14 Aligned_cols=46 Identities=17% Similarity=-0.081 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027299 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207 (225)
Q Consensus 160 DNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~ 207 (225)
.+....+++-.. +|++++.++.-+--.+..+.-++--++|.++++.
T Consensus 120 ~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 120 YSPAKYGIIPEL--VGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hchHHHhhhHHh--cCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444443 4667777766555455455555556667667654
No 44
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=49.23 E-value=1.5e+02 Score=24.53 Aligned_cols=74 Identities=19% Similarity=0.015 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHh-cchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHH
Q 027299 146 EFFAGYILEQSL-SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE--AVNLVLAGILLF 221 (225)
Q Consensus 146 eFltGyllE~sL-SvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~--wv~~iFGa~LI~ 221 (225)
.++.+..+...- +.-+.....++.. -.|+++|.++.-+-..+.-+-.++.-.+|..+.+.+. |..++.+++.+.
T Consensus 87 ~~~~~~~l~g~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 163 (352)
T PF07690_consen 87 LLLIARFLLGIGSGFFSPASNALIAD--WFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLI 163 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--CCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccc--cchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhh
Confidence 344444444333 4455555555555 4567778887766666666666777777777775544 466666655443
No 45
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=47.12 E-value=30 Score=30.62 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=39.1
Q ss_pred cchhHHHHHHHHhhcCCChhhhhhhHHHHHH-H--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA-G--AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (225)
Q Consensus 158 SvDNafVfalIF~~F~VP~~~Q~RvL~~GI~-G--AiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK 225 (225)
..|.++|+++.|+.- . ++|+|-..+|=. | +++.=.++...|..++- =.|+.-+.|++=++.|+|
T Consensus 5 niDdi~vL~~fF~~~--~-~~~~~~IviGqylGf~~Lv~~Sl~~a~gl~~iP-~~wIlGlLGliPI~lGi~ 71 (193)
T TIGR00779 5 GVDLLVILLIFFARA--K-RKEYKDIYIGQYLGSIILILVSLLLAFGVNLIP-EKWVLGLLGLIPIYLGIK 71 (193)
T ss_pred cHHHHHHHHHHHHHc--c-CCCeeEEEEeHHHHHHHHHHHHHHHHHHHHhCC-HHHHHhHHhHHHHHHHHH
Confidence 479999999999844 4 666665555422 2 22222222234443332 259988899988998874
No 46
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=46.17 E-value=1.3e+02 Score=30.30 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=32.4
Q ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 027299 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNL 213 (225)
Q Consensus 173 ~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~ 213 (225)
.+|++++.|+--+--.|..+-.++.-.++.++. .+.|..|
T Consensus 142 WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y 181 (511)
T TIGR00806 142 LVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISY 181 (511)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhH
Confidence 578999999998888888888888888888844 6777644
No 47
>PRK10263 DNA translocase FtsK; Provisional
Probab=45.88 E-value=2.2e+02 Score=32.28 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 027299 185 YGIAGAIVFRLSLIL 199 (225)
Q Consensus 185 ~GI~GAiVfR~ifI~ 199 (225)
=|++|.++..++.-+
T Consensus 143 GGIIG~lLs~lL~~L 157 (1355)
T PRK10263 143 GGVIGSLLSTTLQPL 157 (1355)
T ss_pred cchHHHHHHHHHHHH
Confidence 455555554444443
No 48
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=44.07 E-value=3.2e+02 Score=29.31 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=39.4
Q ss_pred HhcchhH---HHHHHHHhhcCC-ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----h-----hhhHHHHHHHHHHHHh
Q 027299 156 SLSVDNL---FVFVLIFKYFKV-PVMYQNRVLSYGIAGAIVFRLSLILLGTATL----Q-----RFEAVNLVLAGILLFS 222 (225)
Q Consensus 156 sLSvDNa---fVfalIF~~F~V-P~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll----~-----~f~wv~~iFGa~LI~t 222 (225)
.+.+|.+ ||..+.|+.... +.+. +..-++-.+.-++-=++|+++|..+- + ...|...++++++++.
T Consensus 261 lLggSGfLAVFVAGl~~gn~~~~~~~~-~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifV 339 (810)
T TIGR00844 261 MLGVDDLLVSFFAGTAFAWDGWFAQKT-HESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFL 339 (810)
T ss_pred HhccccHHHHHHHHHHHhcccchhhhH-HHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHH
Confidence 5566653 344566665432 2222 34457777777776678899998762 1 1346767777766543
No 49
>PLN02878 homogentisate phytyltransferase
Probab=43.83 E-value=2.8e+02 Score=25.96 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=26.9
Q ss_pred CCCCCCCcccCchhhhcccchhhhhhhHHHHHHHHHHHHHhhhh
Q 027299 92 DNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGV 135 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~s~KeAl~ws~~wI~LAllFg~~I 135 (225)
|+.|..-+..+ ++++|.|+|...+..+..+++..+..+
T Consensus 51 DkINkP~rPIp------SG~iS~~~a~~~~~~~~~lg~~la~~~ 88 (280)
T PLN02878 51 DKVNKPYLPLA------SGEFSVATGVAIVTSFAIMSFGMGWIV 88 (280)
T ss_pred cccCCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456677 458999999988888888777765543
No 50
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=43.46 E-value=2.6e+02 Score=27.09 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHH
Q 027299 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLI 198 (225)
Q Consensus 119 ~ws~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI 198 (225)
..+++=..++++.+..+|...|...+...... +.|+..+|+...=|.+..++.+...++|+++ =++..
T Consensus 340 ~~~alra~la~~~~~l~Wi~t~W~~G~~~~~~-----------~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~-a~~~~ 407 (650)
T PF04632_consen 340 LRNALRAFLAILIAGLFWIATGWPSGATAVMM-----------AAVVSSLFATLDNPAPALRLFLIGALLGAVL-AFLYL 407 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHH-----------HHHHHHHHcCCcChHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34455566777777778887777766554433 3455666787776776666655555554443 33333
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh
Q 027299 199 LLGTATLQRFEAVNLVLAGILLFSS 223 (225)
Q Consensus 199 ~lG~~Ll~~f~wv~~iFGa~LI~tg 223 (225)
+.-.--++-|+.+.++++.+++..+
T Consensus 408 ~~vlP~~~~f~~L~l~l~~~l~~~~ 432 (650)
T PF04632_consen 408 FFVLPHLDGFPLLALVLAPFLFLGG 432 (650)
T ss_pred HHhhhccCcHHHHHHHHHHHHHHHH
Confidence 3333334456666666666665544
No 51
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=41.71 E-value=2.4e+02 Score=24.60 Aligned_cols=35 Identities=3% Similarity=-0.178 Sum_probs=26.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhhheeCchhHHH
Q 027299 112 ESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASE 146 (225)
Q Consensus 112 ~s~KeAl~ws~~wI~LAllFg~~I~~~~G~~~a~e 146 (225)
+++|+-+.|.++++.+..++...+|++.......+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (356)
T PRK10755 2 ISLRRRLLLTIGLILLVFQLISVFWLWHESTEQIQ 36 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 57899999999999887777777777665554444
No 52
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=40.46 E-value=3.8e+02 Score=27.52 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=57.2
Q ss_pred ccchhhhhhhHHH---------HHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHh------cchhHHHHHHHHh---
Q 027299 109 EGRESYTSSVKTV---------AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSL------SVDNLFVFVLIFK--- 170 (225)
Q Consensus 109 ~~~~s~KeAl~ws---------~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sL------SvDNafVfalIF~--- 170 (225)
+++...++|+..+ +.|..+|+.++...|.+.-+..-..=+...+=|+ - .+|++.+++.+|.
T Consensus 128 ~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~~rk~~pl~lss~l~Pllg~~-~~G~~G~~IDi~aiiaTl~GiAT 206 (537)
T COG1292 128 NTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFHYRKGLPLLLSSALYPLLGER-IKGPIGHAVDILAIIATLFGIAT 206 (537)
T ss_pred CCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheeeEecCCCchhhhhhhhhhccc-ccCccchhhHHHHHHHHHHHHHH
Confidence 4566678888776 5677788887763333222222233333444444 3 5788888877664
Q ss_pred ---------------hcCCChhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHhh
Q 027299 171 ---------------YFKVPVMYQNRVLSYGIAGAIVFRLSLILL--GTATLQR 207 (225)
Q Consensus 171 ---------------~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~l--G~~Ll~~ 207 (225)
-|++|....-.+..+.++.++..=....-+ |+..+++
T Consensus 207 sLG~ga~qi~~Gl~~l~gip~~~~~q~~iI~vi~~~~~~S~~sGv~KGIr~LS~ 260 (537)
T COG1292 207 SLGLGALQLTAGLSYLFGIPNSFAVQAIIIAVITALFTISVWSGLDKGIRVLSN 260 (537)
T ss_pred HHHHhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 478887777666666666665544444333 4444443
No 53
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=40.20 E-value=95 Score=28.62 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 027299 179 QNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLF 221 (225)
Q Consensus 179 Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~ 221 (225)
+--.+.||-+||++|-.-++.==--++.++..=.|++|+.-+|
T Consensus 193 ~~~~~vya~lgAllf~~yl~~Dtqllm~~~SPEEYI~aA~~lY 235 (237)
T KOG2322|consen 193 PILVMVYAALGALLFCGYLVYDTQLLMGRISPEEYIFAALNLY 235 (237)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHhccCCHHHHHHHHHHhh
Confidence 3444556666666555444443334444555556666665554
No 54
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=39.43 E-value=1.3e+02 Score=29.78 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=29.2
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHH-HHHHHHHh
Q 027299 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-EAVNLV-LAGILLFS 222 (225)
Q Consensus 174 VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f-~wv~~i-FGa~LI~t 222 (225)
+.+--||..|..|..+- ..-.+++.++..+.+.+ +|..|. .+++++|.
T Consensus 329 id~~gRRpLll~~~~~~-~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~ 378 (485)
T KOG0569|consen 329 IDRLGRRPLLLISLSLM-AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFI 378 (485)
T ss_pred HHhcCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33333555555555544 45566667777788888 688875 45555554
No 55
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=39.37 E-value=2.6e+02 Score=25.94 Aligned_cols=67 Identities=16% Similarity=0.075 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 027299 145 SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI 218 (225)
Q Consensus 145 ~eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~ 218 (225)
..|++|......+++ +..++.. -+++++|.+++.+ .......-.+....+++++..|.|++++..+.
T Consensus 177 ~Rfl~G~~~~~~~~~----~~~~~~E--~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~ 243 (521)
T KOG0255|consen 177 FRFLSGFFGSGPLTV----GFGLVAE--IVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIP 243 (521)
T ss_pred HHHHHHhhccchhHH----hHhhhee--ecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345555554444332 2222233 3678999999999 77777777777788888888788887775443
No 56
>COG3329 Predicted permease [General function prediction only]
Probab=38.51 E-value=1.3e+02 Score=29.43 Aligned_cols=116 Identities=21% Similarity=0.228 Sum_probs=65.0
Q ss_pred cccccCCCccCCCCccccccCCCCCCCCCCCCCCCcccCchhhhcccchhhhhhhHHHHHHHHHHHHHhhhhhheeC--c
Q 027299 64 LACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEG--A 141 (225)
Q Consensus 64 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~KeAl~ws~~wI~LAllFg~~I~~~~G--~ 141 (225)
.|.....+|+|-.|.-+|.+++++..||. + .-++-.+|++.-...-.. +=|+.+.+..| .
T Consensus 176 vA~~e~g~~~d~~ssr~~~~~~~~~ed~~--------v-------~~~ell~Esflnpal~ll---lggl~iGlitGe~g 237 (372)
T COG3329 176 VAAGEYGDQTDLASSRQEYLSPQWGEDNR--------V-------KIWELLQESFLNPALVLL---LGGLAIGLITGEQG 237 (372)
T ss_pred hhhcccCchhhhhhhhhhhcccccCcccc--------h-------hhHHHHHHHHcCchHHHH---HHHHHHhheeccCc
Confidence 56666666666666666666666666662 1 112334666666544332 23455666664 3
Q ss_pred hhHHHHHHHHHHHHHhcchhHHHHHHH---HhhcCCC--hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 027299 142 SKASEFFAGYILEQSLSVDNLFVFVLI---FKYFKVP--VMYQNRVLSYGIAGAIVFRLSLILLGT 202 (225)
Q Consensus 142 ~~a~eFltGyllE~sLSvDNafVfalI---F~~F~VP--~~~Q~RvL~~GI~GAiVfR~ifI~lG~ 202 (225)
++-.|=|+.-+-...|+. |++. -+..+++ ++.-+..+++|++.=++.-.+-+.+|.
T Consensus 238 ~~vl~~F~~~lFqGvL~l-----flL~MGm~A~rrl~elrk~g~~~v~fgllaPil~g~ig~~lg~ 298 (372)
T COG3329 238 ESVLKPFFDPLFQGVLCL-----FLLDMGMTAGRRLKELRKVGQGLVLFGLLAPILHGFIGLLLGM 298 (372)
T ss_pred hhhhhhhhHHHHHHHHHH-----HHHHHhHHHHHHHHHHHhcCcceehHHHHHHHHHHHHHHHHHH
Confidence 444454555566666543 3322 3556666 334456678888888777766666554
No 57
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=38.12 E-value=2.5e+02 Score=26.07 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHH
Q 027299 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVL 167 (225)
Q Consensus 119 ~ws~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfal 167 (225)
-....|..+++.|..++..-.|++.+-.-+++|++-.-=+.-.++++.+
T Consensus 9 ~~~~~~~l~~~~f~yG~~HAlgPGHGKavi~sYlv~~~~~~~~a~~lgl 57 (279)
T PRK10019 9 QQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGL 57 (279)
T ss_pred HcchHHHHHHHHHHHHHHHhcCCCcchHHHhhhhhcCcccHHHHHHHHH
Confidence 3346777778888888888888888877788887765444445555543
No 58
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=37.85 E-value=3e+02 Score=24.68 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 027299 189 GAIVFRLSLILL 200 (225)
Q Consensus 189 GAiVfR~ifI~l 200 (225)
.++++|.++.=+
T Consensus 310 ~~~~~rlii~P~ 321 (385)
T PF03547_consen 310 IAVLVRLIILPL 321 (385)
T ss_pred HHHHHHHHHHHH
Confidence 347888766543
No 59
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=37.23 E-value=2.4e+02 Score=23.40 Aligned_cols=49 Identities=12% Similarity=-0.050 Sum_probs=27.4
Q ss_pred hhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 027299 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (225)
Q Consensus 160 DNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~w 210 (225)
.+....+++.. -.|+++|.|+.-+--.+.-+..++.-.+|..+++.+.|
T Consensus 109 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 109 FTPAYQAMLPD--LVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33334444444 35777777766554445455555656667777665444
No 60
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=36.85 E-value=1.6e+02 Score=29.93 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 027299 192 VFRLSLILLGTATLQRFEAVNLVLAGILLFSS 223 (225)
Q Consensus 192 VfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tg 223 (225)
.+|.-.+..|++++=.|-+...+|+++|.+.+
T Consensus 348 av~~Fc~~~a~av~f~~i~~it~f~a~l~l~~ 379 (798)
T PF02460_consen 348 AVRSFCIYAALAVLFDFIYQITFFPAILVLDG 379 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666777766555566777777776654
No 61
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=35.64 E-value=1.2e+02 Score=23.06 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=30.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhc
Q 027299 176 VMYQNRVLSYGIAGAIVFRLSLILLGTATLQ--RFEAVNLVLAGILLFSSF 224 (225)
Q Consensus 176 ~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~--~f~wv~~iFGa~LI~tgi 224 (225)
+++++|.-.|.+. ..+|+..+++++.+.. -+.|+..++++.|=|.|+
T Consensus 11 ~d~~~R~r~Y~i~--M~~Ri~~fvlA~~~~~~~~la~~~~~~av~LPwvAV 59 (73)
T PF11298_consen 11 QDQRRRRRRYLIM--MGIRIPCFVLAAVVYRLGWLAWAIIVGAVPLPWVAV 59 (73)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhhe
Confidence 4556666777665 4578888887777662 334556666777766653
No 62
>COG2119 Predicted membrane protein [Function unknown]
Probab=34.58 E-value=1.4e+02 Score=26.72 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=45.1
Q ss_pred chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhhh--HHHHHHHHHHHHhhc
Q 027299 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFE--AVNLVLAGILLFSSF 224 (225)
Q Consensus 159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiV-fR~ifI~lG~~Ll~~f~--wv~~iFGa~LI~tgi 224 (225)
+|.-+.++++.+. +|+++..+-|+.+|.. +-++-..+|-+..+-++ |..++.|..-+..|+
T Consensus 17 GDKT~lia~llA~-----r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav 80 (190)
T COG2119 17 GDKTQLIAMLLAM-----RYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAV 80 (190)
T ss_pred ccHHHHHHHHHHH-----hcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 7888999988875 4567888999998865 55666778888886666 777777765555554
No 63
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=34.32 E-value=1.1e+02 Score=31.04 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhc
Q 027299 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSF 224 (225)
Q Consensus 160 DNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgi 224 (225)
+|+.++++++..++ |+.|.+.-.+-+.-..-.-.++++++.|+..+.|++++..++
T Consensus 456 ~~~m~~sl~iG~~h---------l~~G~~lg~~~~~~~~~~~~a~~~~~~w~~~~~G~~~~~~~~ 511 (660)
T COG1269 456 SNILILSLLIGVLH---------LSLGLLLGFINRVRSGDIKGAILPQLLWLLIILGLLLLILGY 511 (660)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 56777777777665 666666666555555555566677888888888888777653
No 64
>TIGR00898 2A0119 cation transport protein.
Probab=34.20 E-value=3.6e+02 Score=24.55 Aligned_cols=47 Identities=11% Similarity=-0.103 Sum_probs=26.0
Q ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 027299 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILL 220 (225)
Q Consensus 173 ~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI 220 (225)
-.|+++|.++..+.-.+..+--++..+++..+ ..|.|.+++.++..+
T Consensus 208 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~~wr~~~~~~~i~~~ 254 (505)
T TIGR00898 208 FLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI-PDWRWLQLAVSLPTF 254 (505)
T ss_pred ecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 35777777766544334444444444444433 357788777765443
No 65
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=33.06 E-value=2.1e+02 Score=25.92 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 027299 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV--FRLSLILLGTATLQRFEAVNLVLAGILLFSS 223 (225)
Q Consensus 146 eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiV--fR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tg 223 (225)
.+.+...+=.+=++|-+.+.++.|+.++. ++...+...==.+|.+. +-.++.+.+...+. =.|+.-++|++=++.|
T Consensus 4 ~~v~sivly~aTaiD~lIiL~l~Far~~~-~k~~~~I~~GQyLGs~~lilaSL~~a~v~~fvp-~e~I~glLGLIPi~LG 81 (205)
T COG4300 4 TVVSSIVLYIATAIDLLIILLLFFARRKS-RKDILHIYLGQYLGSVILILASLLFAFVLNFVP-EEWILGLLGLIPIYLG 81 (205)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc-cCcEEEEeHHHHHhHHHHHHHHHHHHHHHhhCc-HHHHHHHHhHHHHHHh
Confidence 34556666677889999999999998776 33333332222233222 22222222333332 2588888899999988
Q ss_pred cC
Q 027299 224 FK 225 (225)
Q Consensus 224 iK 225 (225)
+|
T Consensus 82 ik 83 (205)
T COG4300 82 IK 83 (205)
T ss_pred hH
Confidence 76
No 66
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=32.84 E-value=1.6e+02 Score=26.61 Aligned_cols=27 Identities=11% Similarity=-0.013 Sum_probs=19.7
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHhhhh
Q 027299 109 EGRESYTSSVKTVAFCVSTAVAFGLGV 135 (225)
Q Consensus 109 ~~~~s~KeAl~ws~~wI~LAllFg~~I 135 (225)
+.+++.|++.....+...+++++|+++
T Consensus 84 ~G~is~~~~~~~~~~~~~ia~~~g~~l 110 (296)
T PRK05951 84 AGIMTLGHLRVLGIALGAIALQLGWSL 110 (296)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999888877777776665554
No 67
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=30.44 E-value=3.5e+02 Score=23.12 Aligned_cols=24 Identities=38% Similarity=0.503 Sum_probs=14.2
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcC
Q 027299 150 GYILEQSLSVDNLFVFVLIFKYFK 173 (225)
Q Consensus 150 GyllE~sLSvDNafVfalIF~~F~ 173 (225)
|++.=.+.|+---++|..++.++.
T Consensus 112 gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555556667777776655
No 68
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=28.59 E-value=1.5e+02 Score=26.76 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027299 163 FVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF 208 (225)
Q Consensus 163 fVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f 208 (225)
+++..+.. +++.+.+....-||..+-+++=.++|..|.+.+.+|
T Consensus 46 ~~l~~i~~--~~~~~~~~~i~~yg~~~h~imal~li~~Gi~ti~~W 89 (224)
T PF09930_consen 46 LLLGYIAS--PINMEIYEFILRYGMVIHLIMALLLIYAGIYTIKKW 89 (224)
T ss_pred HHHHHHHH--HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566 456899999999999999999999999999999664
No 69
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=28.45 E-value=4.2e+02 Score=23.43 Aligned_cols=29 Identities=17% Similarity=0.057 Sum_probs=23.4
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHhhhhhh
Q 027299 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGF 137 (225)
Q Consensus 109 ~~~~s~KeAl~ws~~wI~LAllFg~~I~~ 137 (225)
..+++.|++......+..++++.|+++.+
T Consensus 81 ~G~is~~~~~~~~~~~~~~~~~~g~~l~~ 109 (293)
T PRK06080 81 RGGISPKQVKRAAIAFFGLAALLGLYLVA 109 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999988888888888776644
No 70
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=28.16 E-value=2.1e+02 Score=19.88 Aligned_cols=48 Identities=27% Similarity=0.069 Sum_probs=28.8
Q ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHH
Q 027299 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE--AVNLVLAGILL 220 (225)
Q Consensus 173 ~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~--wv~~iFGa~LI 220 (225)
..|+++|.++.-+--.+.-+...+.-.++..+.+.+. |..++.++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHH
Confidence 4577777777655555555666666666666666543 45565554433
No 71
>PRK14013 hypothetical protein; Provisional
Probab=28.08 E-value=1.7e+02 Score=28.31 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHH-HHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHh
Q 027299 145 SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLS-YGIAGAIVFRLSLIL-LGTATLQRFEAVNLVLAGILLFS 222 (225)
Q Consensus 145 ~eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~-~GI~GAiVfR~ifI~-lG~~Ll~~f~wv~~iFGa~LI~t 222 (225)
..|+.-=+++.+-|.|++..... +- ++.-+.. =.++|++.+|..-+. +-...+++|+++.+-....+.+.
T Consensus 223 ~~fl~lE~~D~~FS~DsV~aafA------iT--~d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~l 294 (338)
T PRK14013 223 GGFLYLEVLDASFSFDGVIGAFA------IT--NDIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGAL 294 (338)
T ss_pred HHHHHHHHHHHHHHhccchhhee------ec--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHH
Confidence 45777778899999999765443 32 2233333 346899999998333 33345689998888777777777
Q ss_pred hcC
Q 027299 223 SFK 225 (225)
Q Consensus 223 giK 225 (225)
|+|
T Consensus 295 gvk 297 (338)
T PRK14013 295 AVI 297 (338)
T ss_pred HHH
Confidence 654
No 72
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=26.71 E-value=2.9e+02 Score=27.47 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 027299 181 RVLSYGIAGAIVFRLSLILLGTATLQRFEAVNL 213 (225)
Q Consensus 181 RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~ 213 (225)
..+.+=-.|+++-| ++|.++++++.|-++
T Consensus 276 ~~~s~~~~~~~vGR----Fig~~lm~~~~~~k~ 304 (422)
T COG0738 276 YYLSFFWVGFMVGR----FIGSALMSRIKPEKY 304 (422)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHhCHHHH
Confidence 33444444555555 455556655555443
No 73
>PF03203 MerC: MerC mercury resistance protein
Probab=26.51 E-value=1.7e+02 Score=22.97 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=25.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHh
Q 027299 177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE------AVNLVLAGILLFS 222 (225)
Q Consensus 177 ~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~------wv~~iFGa~LI~t 222 (225)
..|.+.+.+|.+|..++ +.+..+-+.+. ++.|++++.|+..
T Consensus 62 h~~~~~~~l~~~G~~ll-----~~~~~~~~~~~~~~~e~~lt~~G~~lLi~a 108 (116)
T PF03203_consen 62 HRRWLPLALGVIGLALL-----LLALFLGESYEGEHGETVLTYIGALLLIAA 108 (116)
T ss_pred ccchHHHHHHHHHHHHH-----HHHHHhcchhcchhhhHHHHHHHHHHHHHH
Confidence 55777888888887654 33333333333 5778888777653
No 74
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=26.18 E-value=7.7e+02 Score=27.44 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 027299 193 FRLSLILLGTATLQRFEAVNLVLAGILLFSS 223 (225)
Q Consensus 193 fR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tg 223 (225)
.|..-+.++++++=.|-....+|.++|.+-+
T Consensus 528 vr~F~~~~a~av~~~~l~qit~F~AlLaLD~ 558 (1145)
T TIGR00918 528 LRAFSLQAAIVVVFNFAAVLLVFPAILSLDL 558 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666777776556666677888776543
No 75
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.02 E-value=70 Score=24.67 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhhhhhee
Q 027299 119 KTVAFCVSTAVAFGLGVGFIE 139 (225)
Q Consensus 119 ~ws~~wI~LAllFg~~I~~~~ 139 (225)
+..++|+.+++++|+...++.
T Consensus 4 ~lail~ivl~ll~G~~~G~fi 24 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344689999999998887643
No 76
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=25.98 E-value=5.9e+02 Score=24.32 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCcccCchhhhcccchhhhhhhHH
Q 027299 88 SHENDNTSHSPTTVDDAERQIEGRESYTSSVKT 120 (225)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~s~KeAl~w 120 (225)
+|||.|...||.-..|.-+|=|...| +|...+
T Consensus 5 ~d~eKTE~pT~kKL~dARkkGqV~kS-~el~~a 36 (359)
T PRK05702 5 DDDEKTEEPTPKKLEKAREKGQVPRS-RELNTA 36 (359)
T ss_pred CCCCCCCCCChhHHHHHHHcCCCCch-HHHHHH
Confidence 34444444566666666666676666 555443
No 77
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=25.20 E-value=5.7e+02 Score=23.91 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=25.2
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHhhhhhheeCc
Q 027299 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGA 141 (225)
Q Consensus 109 ~~~~s~KeAl~ws~~wI~LAllFg~~I~~~~G~ 141 (225)
+.+++.|+++....+...++++.|+++-...|.
T Consensus 89 ~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~ 121 (331)
T PRK12392 89 SGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGG 121 (331)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 457899999999998888888777666554443
No 78
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=24.03 E-value=3.7e+02 Score=21.39 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 027299 179 QNRVLSYGIAGAIVFRLSLILL 200 (225)
Q Consensus 179 Q~RvL~~GI~GAiVfR~ifI~l 200 (225)
++|.+.+++++++++-++++..
T Consensus 124 ~N~~l~~~~~~~~~l~~~i~~~ 145 (182)
T PF00689_consen 124 SNKWLLIAILISIALQILIVYV 145 (182)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHHHHhcc
Confidence 6899999999999998888876
No 79
>PRK12505 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.02 E-value=3e+02 Score=23.65 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=24.4
Q ss_pred HHHHHHhhhhhheeCchhHHHHHHHHHHHHH
Q 027299 126 STAVAFGLGVGFIEGASKASEFFAGYILEQS 156 (225)
Q Consensus 126 ~LAllFg~~I~~~~G~~~a~eFltGyllE~s 156 (225)
-+.++|++++.++-..+.+--|.+|.++-.+
T Consensus 28 P~illfs~ylll~Gh~~PGGGFqgGlI~Aaa 58 (159)
T PRK12505 28 PFVFTFGLFVMFHGADSPGGGFQGGVIVASV 58 (159)
T ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHHH
Confidence 3556688888888778888899999887654
No 80
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=23.60 E-value=2.2e+02 Score=26.64 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=27.6
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHh------hhhHHHHHHH
Q 027299 175 PVMYQNRVLSYGIAGAIVFRLSLIL-LGTATLQ------RFEAVNLVLA 216 (225)
Q Consensus 175 P~~~Q~RvL~~GI~GAiVfR~ifI~-lG~~Ll~------~f~wv~~iFG 216 (225)
++--|+|.+.+.++|++++=+.+.+ +|++-.. .+.|+.+++.
T Consensus 191 ~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~ 239 (256)
T PF09788_consen 191 PRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLI 239 (256)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHH
Confidence 4567899999999999887666555 5554431 3456644443
No 81
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=23.59 E-value=9.8e+02 Score=26.19 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHHHHhhcCC-C-hhhhhh-h----------------
Q 027299 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKV-P-VMYQNR-V---------------- 182 (225)
Q Consensus 122 ~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfalIF~~F~V-P-~~~Q~R-v---------------- 182 (225)
++-+.++++++.+++.+.|...+.---..-.+=.+..+||+|+++-- . .+- | .+-.+| +
T Consensus 97 V~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~-~-~~t~~~~~v~eRIa~~l~~vGpSItltslt 174 (886)
T TIGR00920 97 LFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKF-A-LSSNSQDEVRDNIARGMAILGPTITLDTVV 174 (886)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhh-h-hccCCCCCHHHHHHHHHHHhccceeHHHHH
Confidence 56677888888898888887766443333334456799999999632 2 111 1 112222 1
Q ss_pred --HHHHHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 027299 183 --LSYGIAGAI----VFRLSLILLGTATLQRFEAVNLVLAGILLFSS 223 (225)
Q Consensus 183 --L~~GI~GAi----VfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tg 223 (225)
|.+| +|++ ..|..-++.+++++-.|-+-+-.|++.|.+.+
T Consensus 175 e~l~F~-vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF~A~LsL~~ 220 (886)
T TIGR00920 175 ETLVIG-VGTMSGVRRLEVLCCFGCMSVLANYFVFMTFFPACLSLVL 220 (886)
T ss_pred HHHHHH-HhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 1111 23555666777777566666667777776543
No 82
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=23.55 E-value=3.9e+02 Score=21.41 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=36.9
Q ss_pred HHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhc
Q 027299 163 FVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLIL-LGTATLQRFEAVNLVLAGILLFSSF 224 (225)
Q Consensus 163 fVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~-lG~~Ll~~f~wv~~iFGa~LI~tgi 224 (225)
|-++++..-++.+. .+ =.++.+.-...|+++.+ +|+..+.. .|...+-|.+++..|+
T Consensus 43 fg~ll~~~E~~~~~-i~---~~~~FL~~~~GRGlfyif~G~l~~~~-~~~~~i~g~~~~~~G~ 100 (136)
T PF08507_consen 43 FGLLLILAEFRWPF-IR---KYFGFLYSYIGRGLFYIFLGTLCLGQ-SILSIIIGLLLFLVGV 100 (136)
T ss_pred HHHHHHHHHhccHH-HH---HhHhHHHhHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 33444444444343 22 24677778889998865 78777754 7888888888777663
No 83
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=23.54 E-value=1.8e+02 Score=20.37 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHhhc
Q 027299 209 EAVNLVLAGILLFSSF 224 (225)
Q Consensus 209 ~wv~~iFGa~LI~tgi 224 (225)
.|+..+.|+.++++|+
T Consensus 33 ~~~~~~~g~~ll~~g~ 48 (66)
T PF11127_consen 33 GWLLGFVGAMLLVTGI 48 (66)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5777788888888764
No 84
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=23.18 E-value=6.8e+02 Score=24.32 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=30.6
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHH
Q 027299 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR---FEAVNLVLAGILL 220 (225)
Q Consensus 174 VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~---f~wv~~iFGa~LI 220 (225)
.|++++.+.+-.-..|..+-=++..-++-+|.+. |++++|++|++-+
T Consensus 157 ~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~ 206 (466)
T KOG2532|consen 157 APPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGL 206 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHH
Confidence 4777777765555555544333334356667777 8999999998654
No 85
>PF04070 DUF378: Domain of unknown function (DUF378); InterPro: IPR007211 These are predicted membrane proteins of unknown function. The majority of the proteins have two predicted transmembrane regions.
Probab=22.47 E-value=2.6e+02 Score=20.83 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHH-H-HHHHhhhhHHH-HHHHHHHHHhh
Q 027299 182 VLSYGIAGAIVFRLSLILL-G-TATLQRFEAVN-LVLAGILLFSS 223 (225)
Q Consensus 182 vL~~GI~GAiVfR~ifI~l-G-~~Ll~~f~wv~-~iFGa~LI~tg 223 (225)
+|.||++|..=+-.+-.+. | ...++|.-++. -+.|++++..-
T Consensus 16 alNWGliGlf~~nlV~~lfgG~~s~l~RiiY~lVGlagly~i~~l 60 (62)
T PF04070_consen 16 ALNWGLIGLFNFNLVAALFGGSASWLSRIIYILVGLAGLYCISLL 60 (62)
T ss_pred HHHHHHHHHhhccHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888886555555555 3 34444544332 23455555443
No 86
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=22.41 E-value=1.6e+02 Score=26.31 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=14.7
Q ss_pred ccchhhhhhhHHHHHHHHHHH
Q 027299 109 EGRESYTSSVKTVAFCVSTAV 129 (225)
Q Consensus 109 ~~~~s~KeAl~ws~~wI~LAl 129 (225)
+.+++.|||...+.+...+++
T Consensus 77 sG~is~~~a~~~~~~~~~~~~ 97 (279)
T PRK12869 77 VGLVNRKEALAVGSALSALGT 97 (279)
T ss_pred CCCcCHHHHHHHHHHHHHHHH
Confidence 468899999888765544443
No 87
>PRK13741 conjugal transfer entry exclusion protein TraS; Provisional
Probab=22.12 E-value=5.6e+02 Score=22.70 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=21.9
Q ss_pred HhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027299 169 FKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG 201 (225)
Q Consensus 169 F~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG 201 (225)
+-|+.+|+++|++-..+..+--=+.+-+.+.++
T Consensus 84 ~lYLSiP~~fRk~S~v~rfi~~K~k~Yilv~li 116 (171)
T PRK13741 84 MLYLSIPDEFRKESKVIRFIYSKAKFYILVYLI 116 (171)
T ss_pred HHHhcCcHHHHhhhHHHHHHHHhhhHhhhHHHH
Confidence 468899999999988777665444443333333
No 88
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=22.07 E-value=6.2e+02 Score=23.22 Aligned_cols=77 Identities=17% Similarity=0.078 Sum_probs=41.3
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHH
Q 027299 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA 188 (225)
Q Consensus 109 ~~~~s~KeAl~ws~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~ 188 (225)
+.+++.|++..+......++++.+.. .|..+ ..+.+ +-.++.-....|+..=+|.-+++.+
T Consensus 92 sG~ls~~~a~~~~~~~~~lal~la~~--------------~~~~~-~~~~~----~~~~lg~~Ys~pP~rlKr~~~~~~~ 152 (308)
T PRK12887 92 AGEFSRRQGQRIVIITGILALILAAL--------------LGPWL-LITVG----ISLLIGTAYSLPPIRLKRFPLLAAL 152 (308)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHH--------------HhHHH-HHHHH----HHHHHHHHHcCCchhhcccchhHHH
Confidence 35788999987777665555554321 12111 11111 1111122335677666666666766
Q ss_pred HHHHHHHHHHHHHHHH
Q 027299 189 GAIVFRLSLILLGTAT 204 (225)
Q Consensus 189 GAiVfR~ifI~lG~~L 204 (225)
....+|+..+..|+++
T Consensus 153 ~i~~~~g~i~~~g~~~ 168 (308)
T PRK12887 153 CIFTVRGVIVNLGLFL 168 (308)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566777777677543
No 89
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=21.83 E-value=5.6e+02 Score=23.52 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=40.5
Q ss_pred ccCchhhhcccch--hhhhhhHHH----HHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHHHHhhcC
Q 027299 100 TVDDAERQIEGRE--SYTSSVKTV----AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173 (225)
Q Consensus 100 ~~~~~~~~~~~~~--s~KeAl~ws----~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfalIF~~F~ 173 (225)
-.|+-++|.=.++ +.|.++.-. ++...++...|+.-.++.|. .-+.+... +|..+|...+.+..++.+.++
T Consensus 69 GTD~~GRDi~srli~G~r~SL~I~~~~~~~~~~iG~~lG~iaGy~gG~--vD~ilmri-~di~ls~P~lll~i~l~~~~g 145 (289)
T COG1173 69 GTDNLGRDILSRLLYGARISLLIGLLAVLISLVIGTLLGLLAGYFGGW--VDRVLMRI-TDIFLAFPSLLLAILLVAILG 145 (289)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch--HHHHHHHH-HHHHHHccHHHHHHHHHHHHC
Confidence 3455555543332 234444444 44444444444444444443 34444444 899999999999888888777
No 90
>COG4709 Predicted membrane protein [Function unknown]
Probab=21.72 E-value=4.5e+02 Score=23.76 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=13.7
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhh
Q 027299 113 SYTSSVKTVAFCVSTAVAFGLGVGF 137 (225)
Q Consensus 113 s~KeAl~ws~~wI~LAllFg~~I~~ 137 (225)
+.+.+......-..+++.|++.++.
T Consensus 77 n~~~aii~~~~L~~~~v~i~Lpl~~ 101 (195)
T COG4709 77 NVRRAIIALIGLGLLAVIIGLPLLI 101 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566666555544
No 91
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.44 E-value=2e+02 Score=26.27 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=29.3
Q ss_pred HHHhhcCCChhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 027299 167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRL-SLILLGTATLQRFEAVNLVLAGILLFS 222 (225)
Q Consensus 167 lIF~~F~VP~~~Q~RvL~~GI~GAiVfR~-ifI~lG~~Ll~~f~wv~~iFGa~LI~t 222 (225)
.|...|++-+++-++ +.|=++||++.=+ +++++|. ++ .-+|...+.|+.+-.+
T Consensus 12 Qi~q~y~~trk~dp~-l~~~ml~a~l~~~~v~v~ig~-l~-~~~~~~~i~gi~~g~l 65 (224)
T PF13829_consen 12 QIWQAYKMTRKEDPK-LPWLMLGAFLGPIAVFVLIGL-LF-GSWWYWLIIGILLGLL 65 (224)
T ss_pred HHHHHHHHHHHHCcc-hHHHHHHHHHHHHHHHHHHHH-HH-ccHHHHHHHHHHHHHH
Confidence 345556666565555 5555556655444 3344443 33 3567777777765443
No 92
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.15 E-value=2.2e+02 Score=28.01 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=12.8
Q ss_pred CChhhhhhhHHHHHHHH
Q 027299 174 VPVMYQNRVLSYGIAGA 190 (225)
Q Consensus 174 VP~~~Q~RvL~~GI~GA 190 (225)
=|+..|+.|.++-| ||
T Consensus 210 WP~~mR~gvyY~si-g~ 225 (372)
T KOG2927|consen 210 WPRRMRQGVYYLSI-GA 225 (372)
T ss_pred CcHHHhcceeeeec-ch
Confidence 48899999988887 44
No 93
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=21.05 E-value=3.5e+02 Score=20.02 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=28.8
Q ss_pred HHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027299 153 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205 (225)
Q Consensus 153 lE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll 205 (225)
||..|+.|+==.-.- ++.- -|+..+.|...+|+++.++- .+++++|+.+-
T Consensus 14 iEr~L~~~DP~fa~~-l~~~-~~~~~~~r~~~~~~~~~v~g-l~llv~G~~~~ 63 (82)
T PF11239_consen 14 IERQLRADDPRFAAR-LRSG-RPRRPSRRRRVLGVLLVVVG-LALLVAGVVLS 63 (82)
T ss_pred HHHHHHhcCcHHHHH-hccC-CCCCCchhHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 788887765443332 3322 24556666667777754433 56666666554
No 94
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=20.99 E-value=4.3e+02 Score=20.97 Aligned_cols=44 Identities=7% Similarity=-0.050 Sum_probs=27.8
Q ss_pred cccchhhhhhhHHHHH-HHHHHHHHhhhhhhee---CchhHHHHHHHH
Q 027299 108 IEGRESYTSSVKTVAF-CVSTAVAFGLGVGFIE---GASKASEFFAGY 151 (225)
Q Consensus 108 ~~~~~s~KeAl~ws~~-wI~LAllFg~~I~~~~---G~~~a~eFltGy 151 (225)
.+..+++++|+..... .+..++++++..|.+. .++...++..-.
T Consensus 57 ~~g~isf~~a~~~g~~~~~ia~li~~v~~~i~~~~IdP~~~~~~~~~~ 104 (163)
T PF13858_consen 57 NGGFISFGQAFKVGFLISLIAGLISAVFQYIYFNYIDPDFFENYIEAQ 104 (163)
T ss_pred cCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4568999999988754 4445555565555433 566555555555
No 95
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=20.42 E-value=3e+02 Score=26.22 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=25.5
Q ss_pred chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHH
Q 027299 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLI 198 (225)
Q Consensus 159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI 198 (225)
+|--|.++.|++.+ |-++..+-|-.+|+.+-.++-
T Consensus 82 GDKTFfiAAlmAmr-----~~R~~Vf~Ga~~AL~lMTiLS 116 (294)
T KOG2881|consen 82 GDKTFFIAALMAMR-----YPRLTVFSGAMSALALMTILS 116 (294)
T ss_pred cchHHHHHHHHHhh-----ccchhHHHHHHHHHHHHHHHH
Confidence 68889999999854 345667788888887655543
No 96
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=20.06 E-value=3e+02 Score=25.35 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 027299 181 RVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSS 223 (225)
Q Consensus 181 RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tg 223 (225)
|++.|-++|+++-=+--.+..+.-++ .+++.+-|++||+.|
T Consensus 54 Ri~SYallG~i~G~lG~~l~~~~~~~--~~l~i~ag~~li~lG 94 (232)
T COG2836 54 RILSYALLGAILGALGVSLGQSAGLR--GVLFIIAGALLIALG 94 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 78888888887655554444444443 356777777777765
No 97
>PF10734 DUF2523: Protein of unknown function (DUF2523); InterPro: IPR019670 This entry represents a family of phage-related proteins whose function is uncharacterised.
Probab=20.04 E-value=3.7e+02 Score=19.85 Aligned_cols=73 Identities=25% Similarity=0.288 Sum_probs=36.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHH
Q 027299 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFR 194 (225)
Q Consensus 115 KeAl~ws~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR 194 (225)
+..+.|.+.-+..++.|+...| .|-+...+.+-.++....=+.+- -.+.++..+++|+ ++.+ |++|+.+|
T Consensus 8 ~~l~~~~v~~~L~alg~~~vt~--~~~~~~~~~~~~~~~s~~~~lp~--~v~~~l~~~gi~~-----al~i-I~sA~~~r 77 (83)
T PF10734_consen 8 ADLFKSLVGRVLVALGFGLVTY--TGLDALLDQIISYIQSYFGGLPS--DVLQILGLFGIGQ-----ALNI-ILSAIAFR 77 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHhCccH-----HHHH-HHHHHHHH
Confidence 4455566666666666655444 34444444444444443322221 1222234456663 2333 67888888
Q ss_pred HHH
Q 027299 195 LSL 197 (225)
Q Consensus 195 ~if 197 (225)
..+
T Consensus 78 ~~l 80 (83)
T PF10734_consen 78 FTL 80 (83)
T ss_pred HHH
Confidence 765
Done!