Query 027299
Match_columns 225
No_of_seqs 152 out of 810
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 12:48:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 43.8 1.3E+02 0.0046 24.6 9.2 56 160-217 136-194 (451)
2 4aps_A DI-OR tripeptide H+ sym 24.4 3.1E+02 0.011 22.9 11.9 56 160-217 125-184 (491)
3 4hg6_A Cellulose synthase subu 22.7 2.9E+02 0.0098 26.8 8.4 70 114-197 13-82 (802)
4 1pw4_A Glycerol-3-phosphate tr 21.6 3.3E+02 0.011 22.2 13.4 48 173-220 374-424 (451)
5 2esy_A LUNG surfactant protein 15.2 64 0.0022 20.5 1.3 11 25-35 1-11 (32)
6 2gfp_A EMRD, multidrug resista 14.1 4.9E+02 0.017 20.8 8.1 45 175-219 118-164 (375)
7 3o7q_A L-fucose-proton symport 13.0 5.4E+02 0.019 20.9 11.8 44 160-205 134-177 (438)
8 2ls4_A High affinity copper up 16.1 46 0.0016 20.1 0.0 20 123-142 3-23 (26)
9 3ixz_A Potassium-transporting 11.5 2.4E+02 0.0083 28.3 4.9 23 178-200 960-982 (1034)
10 3aqp_A Probable secdf protein- 10.7 8.7E+02 0.03 23.5 8.4 29 139-167 615-643 (741)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=43.81 E-value=1.3e+02 Score=24.59 Aligned_cols=56 Identities=11% Similarity=-0.204 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHH
Q 027299 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR---FEAVNLVLAG 217 (225)
Q Consensus 160 DNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~---f~wv~~iFGa 217 (225)
-+....+++... .|+++|.++.-+--.+.-+.-++.-++|.++++. |.|.+++.++
T Consensus 136 ~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~ 194 (451)
T 1pw4_A 136 GWPPCGRTMVHW--WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 194 (451)
T ss_dssp THHHHHHHHHTT--CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred ccchHHHHHHHH--CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334444554553 4667776665554444444455555566666654 4455555443
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=24.39 E-value=3.1e+02 Score=22.95 Aligned_cols=56 Identities=14% Similarity=-0.068 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhhcCCChhhhhhhHHHHH--HHHHHHHHHHHHHHHHHHhhh--hHHHHHHHH
Q 027299 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGI--AGAIVFRLSLILLGTATLQRF--EAVNLVLAG 217 (225)
Q Consensus 160 DNafVfalIF~~F~VP~~~Q~RvL~~GI--~GAiVfR~ifI~lG~~Ll~~f--~wv~~iFGa 217 (225)
.+....+++-.. .|+++++|....|+ .+.-+.-++.-.++..+.+.+ .|.+++.++
T Consensus 125 ~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~ 184 (491)
T 4aps_A 125 LKPNVSTLVGTL--YDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAI 184 (491)
T ss_dssp HHHHHHHHHHHH--SSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ccchHHHHHHHH--cCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344444454454 46667666666666 333444455555666666544 445555443
No 3
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=22.67 E-value=2.9e+02 Score=26.81 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHH
Q 027299 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF 193 (225)
Q Consensus 114 ~KeAl~ws~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVf 193 (225)
+...+.| ++|++.++++-+.+..-. +...++.-+.++ + +.++++. .+++..-.|+++.++...+.+
T Consensus 13 ~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (802)
T 4hg6_A 13 VVPVLLF-LLWVALLVPFGLLAAAPV--APSAQGLIALSA--------V-VLVALLK--PFADKMVPRFLLLSAASMLVM 78 (802)
T ss_dssp CHHHHHH-HHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH--------H-HHHHHHG--GGTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHhheEeec--chHHHHHHHHHH--------H-HHHHHHH--HhccCcchHHHHHHHHHHHHH
Confidence 4445555 677776665544444333 333332222111 1 2222233 234444457777777777777
Q ss_pred HHHH
Q 027299 194 RLSL 197 (225)
Q Consensus 194 R~if 197 (225)
|-+.
T Consensus 79 ~y~~ 82 (802)
T 4hg6_A 79 RYWF 82 (802)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=21.61 E-value=3.3e+02 Score=22.20 Aligned_cols=48 Identities=8% Similarity=-0.017 Sum_probs=25.7
Q ss_pred CCChhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhh--hhHHHHHHHHHHH
Q 027299 173 KVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQR--FEAVNLVLAGILL 220 (225)
Q Consensus 173 ~VP~~~Q~RvL~~GI~GAiV-fR~ifI~lG~~Ll~~--f~wv~~iFGa~LI 220 (225)
..|++.|-++.-+-....-+ ..++.-.++..+.+. +.+..++++++.+
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 424 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 424 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45666655554333333333 556666666667765 3455555554433
No 5
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=15.19 E-value=64 Score=20.55 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=9.1
Q ss_pred cCCCcCCCCCc
Q 027299 25 SPTSTSQVPKL 35 (225)
Q Consensus 25 ~~~~~~~~~~~ 35 (225)
+||+|++.|.-
T Consensus 1 sPPdYSa~P~g 11 (32)
T 2esy_A 1 SPPDYSAAPRG 11 (32)
T ss_dssp CCCCCCSCCCS
T ss_pred CCCccccCcCc
Confidence 58899988876
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=14.10 E-value=4.9e+02 Score=20.83 Aligned_cols=45 Identities=20% Similarity=0.049 Sum_probs=25.0
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHH
Q 027299 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR--FEAVNLVLAGIL 219 (225)
Q Consensus 175 P~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~--f~wv~~iFGa~L 219 (225)
|+++|.++.-+--.+.-+.-++.-.++..+.+. |.|..++.++..
T Consensus 118 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 118 ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 556666665554444445555666666666654 344555555443
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=13.04 E-value=5.4e+02 Score=20.85 Aligned_cols=44 Identities=7% Similarity=-0.083 Sum_probs=24.7
Q ss_pred hhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027299 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205 (225)
Q Consensus 160 DNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll 205 (225)
....+..++-. -.|+++|.++.-+--.+.-+..++.-.++..++
T Consensus 134 ~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 134 LETAANPFVTV--LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHH--SSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhhHHHHHHH--HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444 347788877665544444555555556666666
No 8
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=16.14 E-value=46 Score=20.08 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhhhee-Cch
Q 027299 123 FCVSTAVAFGLGVGFIE-GAS 142 (225)
Q Consensus 123 ~wI~LAllFg~~I~~~~-G~~ 142 (225)
.|+.+|++.|..+.++. |.+
T Consensus 3 g~l~iavvlGa~~Gyf~F~~~ 23 (26)
T 2ls4_A 3 GYLCIAVAAGAGTGYFLFSWK 23 (26)
Confidence 48899999988887653 443
No 9
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=11.50 E-value=2.4e+02 Score=28.31 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 027299 178 YQNRVLSYGIAGAIVFRLSLILL 200 (225)
Q Consensus 178 ~Q~RvL~~GI~GAiVfR~ifI~l 200 (225)
.+++.|+++++..+++-++++.+
T Consensus 960 ~~N~~l~~~~~~~~~l~~~~~~~ 982 (1034)
T 3ixz_A 960 FRNRILVIAIVFQVCIGCFLCYC 982 (1034)
T ss_pred cccHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999988877754
No 10
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=10.69 E-value=8.7e+02 Score=23.51 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=20.0
Q ss_pred eCchhHHHHHHHHHHHHHhcchhHHHHHH
Q 027299 139 EGASKASEFFAGYILEQSLSVDNLFVFVL 167 (225)
Q Consensus 139 ~G~~~a~eFltGyllE~sLSvDNafVfal 167 (225)
.|.+-....+.|.++=.-+|+||.+++.-
T Consensus 615 ~g~~l~~~~i~~~l~liGisvd~~I~l~~ 643 (741)
T 3aqp_A 615 LGLEFSIPTIAALLTIVGYSINDSIVVSD 643 (741)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCccHHHHHHHHHHHHHhhcceEEehH
Confidence 34444455567777667799999988773
Done!