Query 027299
Match_columns 225
No_of_seqs 152 out of 810
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 12:48:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027299.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027299hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 15.1 72 0.0053 19.3 3.1 22 173-194 7-28 (37)
2 d1pv7a_ f.38.1.2 (A:) Lactose 14.6 2E+02 0.014 20.3 11.3 62 158-221 327-391 (417)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 6.9 1.3E+02 0.0096 16.8 2.0 12 210-221 8-19 (26)
4 d2v0fa1 d.76.2.1 (A:2629-2715) 5.9 96 0.007 21.7 1.3 15 169-183 62-76 (87)
5 d1wpga4 f.33.1.1 (A:1-124,A:24 5.5 1.7E+02 0.012 24.1 2.9 24 69-92 17-40 (472)
6 d1d5ra2 c.45.1.1 (A:14-187) Ph 5.1 4.5E+02 0.032 18.2 4.8 50 135-184 109-163 (174)
7 d1jfia_ a.22.1.3 (A:) Negative 4.6 2.1E+02 0.015 17.6 2.3 14 143-156 31-44 (66)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 4.1 2.9E+02 0.021 15.8 2.3 7 183-189 14-20 (32)
9 d1i9sa_ c.45.1.1 (A:) mRNA cap 4.1 3.6E+02 0.026 19.5 3.6 49 135-183 120-169 (194)
10 d1fpza_ c.45.1.1 (A:) Kinase a 4.0 5.1E+02 0.037 18.1 4.4 50 134-183 113-165 (176)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.08 E-value=72 Score=19.31 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=16.2
Q ss_pred CCChhhhhhhHHHHHHHHHHHH
Q 027299 173 KVPVMYQNRVLSYGIAGAIVFR 194 (225)
Q Consensus 173 ~VP~~~Q~RvL~~GI~GAiVfR 194 (225)
+.|-|.-+..|+||++--.++-
T Consensus 7 ~q~veLNrtsLy~GlLlifvl~ 28 (37)
T d2axtl1 7 RQPVELNRTSLYLGLLLILVLA 28 (37)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHH
T ss_pred CCccccchhhHHHHHHHHHHHH
Confidence 4577888899999987655543
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=14.57 E-value=2e+02 Score=20.32 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=30.2
Q ss_pred cchhHHHHHHHHhhcCCChhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHH
Q 027299 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGI-AGAIVFRLSLILLGTATLQRF--EAVNLVLAGILLF 221 (225)
Q Consensus 158 SvDNafVfalIF~~F~VP~~~Q~RvL~~GI-~GAiVfR~ifI~lG~~Ll~~f--~wv~~iFGa~LI~ 221 (225)
+.-+......+.+ .+|++.|-++.-... ++.-+..++.-.++-++.+.+ .+..+++|++.+.
T Consensus 327 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~ 391 (417)
T d1pv7a_ 327 PFLLVGCFKYITS--QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391 (417)
T ss_dssp HHHHHHHHHHHHH--HSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 3334444444434 467777776543221 112233444445555666664 3555666655443
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.87 E-value=1.3e+02 Score=16.80 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 027299 210 AVNLVLAGILLF 221 (225)
Q Consensus 210 wv~~iFGa~LI~ 221 (225)
|++.+|=++|+|
T Consensus 8 w~fw~ffalli~ 19 (26)
T d1rzhh2 8 YSFWIFLAGLIY 19 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
No 4
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.89 E-value=96 Score=21.70 Aligned_cols=15 Identities=27% Similarity=0.122 Sum_probs=12.3
Q ss_pred HhhcCCChhhhhhhH
Q 027299 169 FKYFKVPVMYQNRVL 183 (225)
Q Consensus 169 F~~F~VP~~~Q~RvL 183 (225)
...+.+|+++|+|+|
T Consensus 62 k~~g~lpe~~~~R~l 76 (87)
T d2v0fa1 62 KQSGFVPESMFDRLL 76 (87)
T ss_dssp HHHSSSCGGGGGGSC
T ss_pred hhcCcCcHHHhhccc
Confidence 467788999999976
No 5
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=5.47 E-value=1.7e+02 Score=24.11 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=15.6
Q ss_pred CCCccCCCCccccccCCCCCCCCC
Q 027299 69 GTEQEDDLSTSEVGRSSSQSHEND 92 (225)
Q Consensus 69 ~~~q~~~~~~~~~~~~~~~~~~~~ 92 (225)
++|.+.|++..+..+.-.+.-.|.
T Consensus 17 ~td~~~GLs~~ea~~r~~~~G~N~ 40 (472)
T d1wpga4 17 GVSETTGLTPDQVKRHLEKYGHNE 40 (472)
T ss_dssp TCCTTTCBCHHHHHHHHHHSCCSS
T ss_pred CcCcccCcCHHHHHHHHHhcCCCC
Confidence 567788888877766444444553
No 6
>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.15 E-value=4.5e+02 Score=18.20 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=33.1
Q ss_pred hhheeCchhHHHHHHHHHHHHH--hcchhHHHHHHHHhhcCC---ChhhhhhhHH
Q 027299 135 VGFIEGASKASEFFAGYILEQS--LSVDNLFVFVLIFKYFKV---PVMYQNRVLS 184 (225)
Q Consensus 135 I~~~~G~~~a~eFltGyllE~s--LSvDNafVfalIF~~F~V---P~~~Q~RvL~ 184 (225)
|--..|...+.-+.++|++..- .+.|.++-+.-..+...- ....|.|.|-
T Consensus 109 VHC~~G~gRSg~~~~ayL~~~~~~~~~~~al~~~~~~R~~~~~~v~~psQ~ryl~ 163 (174)
T d1d5ra2 109 IHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVY 163 (174)
T ss_dssp EECSSSSHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHCSSSCSSCSHHHHHHHH
T ss_pred EEeCCCcchhHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 3345688899999999999876 588898876654553331 2234655443
No 7
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.60 E-value=2.1e+02 Score=17.62 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHH
Q 027299 143 KASEFFAGYILEQS 156 (225)
Q Consensus 143 ~a~eFltGyllE~s 156 (225)
++.|+|..+++|.+
T Consensus 31 ~a~E~Fi~~l~~~A 44 (66)
T d1jfia_ 31 RALELFLESLLKKA 44 (66)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999999986
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.07 E-value=2.9e+02 Score=15.80 Aligned_cols=7 Identities=57% Similarity=0.762 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 027299 183 LSYGIAG 189 (225)
Q Consensus 183 L~~GI~G 189 (225)
|++||.-
T Consensus 14 lffgiav 20 (32)
T d2e74e1 14 LFFGIAV 20 (32)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3444433
No 9
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.06 E-value=3.6e+02 Score=19.46 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=35.7
Q ss_pred hhheeCchhHHHHHHHHHHHH-HhcchhHHHHHHHHhhcCCChhhhhhhH
Q 027299 135 VGFIEGASKASEFFAGYILEQ-SLSVDNLFVFVLIFKYFKVPVMYQNRVL 183 (225)
Q Consensus 135 I~~~~G~~~a~eFltGyllE~-sLSvDNafVfalIF~~F~VP~~~Q~RvL 183 (225)
|--..|...+.-..+.|++++ -.|.|.++-+...-+--.++...+.+.|
T Consensus 120 VHC~~G~~Rsg~~i~ayL~~~~~~s~~~Ai~~~~~~Rp~~i~~~~~~~~L 169 (194)
T d1i9sa_ 120 VHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKEL 169 (194)
T ss_dssp EECSSSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCCCCHHHHHHH
T ss_pred EECCCCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 334568889999999999975 8899998887765554456666555555
No 10
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.04 E-value=5.1e+02 Score=18.13 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=35.0
Q ss_pred hhhheeCchhHHHHHHHHHHHH--HhcchhHHHHHHHHhh-cCCChhhhhhhH
Q 027299 134 GVGFIEGASKASEFFAGYILEQ--SLSVDNLFVFVLIFKY-FKVPVMYQNRVL 183 (225)
Q Consensus 134 ~I~~~~G~~~a~eFltGyllE~--sLSvDNafVfalIF~~-F~VP~~~Q~RvL 183 (225)
+|--..|...+..+.++|+++. -++.|.++-+.--.+. ..+....|.+.+
T Consensus 113 ~VHC~~G~gRtg~v~~~~Li~~~~~~~~~~Ai~~vr~~R~~~~i~t~~Q~~~l 165 (176)
T d1fpza_ 113 LIHSYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQYNYL 165 (176)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHCTTSSCSHHHHHHH
T ss_pred EEEecCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 3334568889999999999985 5789998877654442 235556777654
Done!