BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027300
MAATAGSIFAASSQFASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGK
VTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKL
LPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNG
VEWDGPYRIKFLVPRAWRNKPMDFFNKVITKQMSVTCNYIFTPKV

High Scoring Gene Products

Symbol, full name Information P value
PIFI
AT3G15840 		protein from Arabidopsis thaliana 5.5e-61

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027300
        (225 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2093287 - symbol:PIFI "AT3G15840" species:3702...   624  5.5e-61   1


>TAIR|locus:2093287 [details] [associations]
            symbol:PIFI "AT3G15840" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0010478 "chlororespiration" evidence=IMP] GO:GO:0009570
            EMBL:CP002686 EMBL:AB017071 GO:GO:0009579 EMBL:AY035025
            EMBL:AY133879 IPI:IPI00524747 RefSeq:NP_566528.1 UniGene:At.24608
            IntAct:Q9LVZ5 STRING:Q9LVZ5 PRIDE:Q9LVZ5 EnsemblPlants:AT3G15840.1
            GeneID:820827 KEGG:ath:AT3G15840 TAIR:At3g15840 InParanoid:Q9LVZ5
            OMA:FTNGVDW ProtClustDB:CLSN2688423 ArrayExpress:Q9LVZ5
            Genevestigator:Q9LVZ5 GO:GO:0010478 Uniprot:Q9LVZ5
        Length = 268

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 114/185 (61%), Positives = 141/185 (76%)

Query:    30 SVSSTLGSSFKGASLPRSSPKQKKTVRITGKXXXXXXXXXNPYEEIEEYTRPSWAMFELG 89
             S  S L SS  G  L R  P++K  +++             P EEI+EY  PSWAMFE+G
Sbjct:    20 SKRSFLYSSRIGPIL-RRFPRKKLDLQVKAVATTLA-----PLEEIKEYKLPSWAMFEMG 73

Query:    90 KAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLR 149
              APVYWKTMNGLPP SGEKLK+FYNP A KL  NED+G+ FNGGFNQP MCGGEPRAML+
Sbjct:    74 TAPVYWKTMNGLPPTSGEKLKLFYNPAASKLTLNEDYGVAFNGGFNQPIMCGGEPRAMLK 133

Query:   150 KNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKVI 209
             K+RG+ DSP YT+QIC+PKHA+NLIFSFTNGV+WDGPYR++F VP+ W+NKP++FFN+ +
Sbjct:   134 KDRGKADSPIYTMQICIPKHAVNLIFSFTNGVDWDGPYRLQFQVPKRWQNKPIEFFNEGL 193

Query:   210 TKQMS 214
               ++S
Sbjct:   194 ANELS 198


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       199   0.00085  111 3  11 22  0.48    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  190 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.44u 0.12s 17.56t   Elapsed:  00:00:01
  Total cpu time:  17.44u 0.12s 17.56t   Elapsed:  00:00:01
  Start:  Fri May 10 09:01:16 2013   End:  Fri May 10 09:01:17 2013

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