BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027300
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0AJI9|THIC_NITEC Phosphomethylpyrimidine synthase OS=Nitrosomonas eutropha (strain
C91) GN=thiC PE=3 SV=1
Length = 632
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 22/195 (11%)
Query: 3 ATAGSIFAASSQFASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGKVT 62
A +I A+ A + RN +++ +G+S G+S+ K +R G
Sbjct: 206 ARGRAIIPANINHPEAEPMIIGRNFLVKINANIGNSALGSSIQDEVEKMTWAIRWGGDTV 265
Query: 63 AAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLP 122
++T N +E E R S +G P+Y L + G+ ++ + + L+
Sbjct: 266 MDLSTGKNIHETREWIIRNS--PVPIGTVPIY----QALEKVDGKAEELTWEIFRDTLIE 319
Query: 123 NEDFGIGF---NGGFNQPFMCGGEPRAMLRKNRG-----------QNDSPFYTI--QICV 166
+ G+ + + G PF+ R +RG +S YT IC
Sbjct: 320 QAEQGVDYFTIHAGVRLPFVPMTAKRMTGIVSRGGSIMAKWCLAHHKESFLYTHFEDICE 379
Query: 167 PKHAINLIFSFTNGV 181
A ++ FS +G+
Sbjct: 380 IMKAYDVSFSLGDGL 394
>sp|Q82Y50|THIC_NITEU Phosphomethylpyrimidine synthase OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=thiC PE=3 SV=1
Length = 632
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 22/173 (12%)
Query: 25 RNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIEEYTRPSWA 84
RN +++ +G+S G+S+ K +R G ++T N +E E R S
Sbjct: 228 RNFLVKINANIGNSALGSSIQDEVEKMTWAIRWGGDTVMDLSTGKNIHETREWIIRNS-- 285
Query: 85 MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGF---NGGFNQPFMCG 141
+G P+Y L + G+ ++ + + L+ + G+ + + G PF+
Sbjct: 286 PVPIGTVPIY----QALEKVDGKAEELTWEIFRDTLIEQAEQGVDYFTIHAGVRLPFIPM 341
Query: 142 GEPRAMLRKNRG-----------QNDSPFYTI--QICVPKHAINLIFSFTNGV 181
R +RG +S YT IC A ++ FS +G+
Sbjct: 342 TAKRMTGIVSRGGSIMAKWCLAHHQESFLYTHFEDICEIMKAYDVSFSLGDGL 394
>sp|P23671|AMY_CLOAB Alpha-amylase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM
792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=amyA PE=3
SV=2
Length = 760
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 104 MSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQ 163
+SG I+YN N G NG N + AM++ + G F+
Sbjct: 583 VSGNNFTIYYNGNLANS-SNVSLHWGVNGWSNMQNL------AMVKDSNG-----FWEAT 630
Query: 164 ICVPKHAINLIFSFTNGVEWD 184
I +P + L F FTNG WD
Sbjct: 631 IAIPASSNTLNFCFTNGSSWD 651
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,451,275
Number of Sequences: 539616
Number of extensions: 3779860
Number of successful extensions: 7343
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7318
Number of HSP's gapped (non-prelim): 33
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)