Query 027300
Match_columns 225
No_of_seqs 17 out of 19
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 12:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c3v_A Alpha-amylase G-6; carb 93.4 0.081 2.8E-06 40.2 4.2 71 103-186 6-77 (102)
2 2laa_A Beta/alpha-amylase; SBD 91.9 0.1 3.4E-06 39.7 2.9 68 105-187 3-73 (104)
3 3d6x_A (3R)-hydroxymyristoyl-[ 41.6 4.7 0.00016 29.1 -0.4 20 119-141 37-57 (146)
4 2e9g_A AP-1 complex subunit ga 26.2 95 0.0033 23.3 4.6 29 171-199 40-69 (131)
5 3mnm_A ADP-ribosylation factor 26.2 96 0.0033 23.3 4.7 30 169-198 31-61 (123)
6 2rp4_A Transcription factor P5 25.4 31 0.0011 25.8 1.7 13 184-196 19-31 (76)
7 1fcq_A Hyaluronoglucosaminidas 23.8 40 0.0014 30.5 2.5 30 104-136 46-80 (350)
8 2gll_A FABZ, (3R)-hydroxymyris 23.3 13 0.00046 28.5 -0.6 21 118-141 58-79 (171)
9 2yz0_A Serine/threonine-protei 21.9 2.3E+02 0.0078 20.4 6.4 54 156-210 44-102 (138)
10 2pe4_A Hyaluronidase-1; hyalur 21.3 36 0.0012 31.6 1.7 30 104-136 47-79 (424)
11 1gyu_A Adapter-related protein 20.6 87 0.003 24.1 3.5 28 171-198 49-77 (140)
12 1klf_A FIMC chaperone, chapero 20.3 56 0.0019 26.3 2.4 59 41-120 51-122 (205)
No 1
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=93.44 E-value=0.081 Score=40.19 Aligned_cols=71 Identities=17% Similarity=0.359 Sum_probs=44.4
Q ss_pred CCCCCceEEEEccccCCCCCCCceeeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEeecCC-
Q 027300 103 PMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGV- 181 (225)
Q Consensus 103 P~sGe~L~lfyNp~a~~l~PNe~fGIaFNGgFNQPIMCGGEPR~M~~k~RGkad~PiYtI~I~vPkHA~~LiFSFTnG~- 181 (225)
|..|+..+|||+.. -=.++-.||.+- |.+.+.= | -.|.+. .|.=-+...|.+|. +..|+|-|+||.
T Consensus 6 p~~g~~vTvyY~sg--~~~~ylHy~~~~-g~Wt~vp---g--v~M~~~----~~~Gw~~~TI~~~~-~~~l~~~F~dG~~ 72 (102)
T 2c3v_A 6 SGDATDITIYYKTG--WTHPHIHYSLNQ-GAWTTLP---G--VPLTKS----EXEGXVKVTIEAEE-GSQLRAAFNNGSG 72 (102)
T ss_dssp --CCCSEEEEEECC--CSSCEEEEEETT-CCBCCTT---C--EECEEC----SSTTEEEEEECCCT-TCEEEEEEECSSS
T ss_pred CCCCCEEEEEEcCC--CCcEEEEEeCCC-CCcccCC---C--cCcccc----ccCCceEEEEecCC-CceEEEEEeCCCc
Confidence 34499999999933 334555666322 3455531 1 124322 24445688899984 689999999999
Q ss_pred cCCCc
Q 027300 182 EWDGP 186 (225)
Q Consensus 182 dWDGp 186 (225)
.||-.
T Consensus 73 ~WDNN 77 (102)
T 2c3v_A 73 QWDNN 77 (102)
T ss_dssp CEECG
T ss_pred ccccC
Confidence 79954
No 2
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=91.93 E-value=0.1 Score=39.74 Aligned_cols=68 Identities=22% Similarity=0.386 Sum_probs=44.0
Q ss_pred CCCceEEEEccccCCCCCCCceeeeec-CCCCCccccCCchhhhhhhhhCCCCCCce-EEEeeeccceeeEEEEeecCC-
Q 027300 105 SGEKLKIFYNPYAKKLLPNEDFGIGFN-GGFNQPFMCGGEPRAMLRKNRGQNDSPFY-TIQICVPKHAINLIFSFTNGV- 181 (225)
Q Consensus 105 sGe~L~lfyNp~a~~l~PNe~fGIaFN-GgFNQPIMCGGEPR~M~~k~RGkad~PiY-tI~I~vPkHA~~LiFSFTnG~- 181 (225)
.|+.++|||++.++.. .-.|| +. |..+++ -| -.|.+. +-|-| +..|.||. +..|+|-|+||.
T Consensus 3 ~g~~vtiyY~~g~~~v--ylHyg--~~~g~Wt~~---~~--v~M~~~-----~~~gw~~~TI~l~~-g~~~~~~F~dG~~ 67 (104)
T 2laa_A 3 TGNKVTIYYKKGFNSP--YIHYR--PAGGSWTAA---PG--VKMQDA-----EISGYAKITVDIGS-ASQLEAAFNDGNN 67 (104)
T ss_dssp CCCEEEEEEECSSSSC--EEEEE--ETTSCCCSS---SC--EECEEE-----TTTTEEEEEEECTT-CSCEEEEEECSSS
T ss_pred CCCEEEEEEcCCCCcE--EEEEc--CCCCCCCcC---Cc--cccccc-----cCCCeEEEEEECCC-CCEEEEEEeCCCC
Confidence 4899999999655443 33455 33 456553 01 123221 11567 69999996 689999999998
Q ss_pred cCCCce
Q 027300 182 EWDGPY 187 (225)
Q Consensus 182 dWDGpY 187 (225)
.||-.-
T Consensus 68 ~WDNn~ 73 (104)
T 2laa_A 68 NWDSNN 73 (104)
T ss_dssp CEESTT
T ss_pred cCcCCC
Confidence 799653
No 3
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=41.61 E-value=4.7 Score=29.13 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=17.0
Q ss_pred CCCCCCceeeeecCCC-CCccccC
Q 027300 119 KLLPNEDFGIGFNGGF-NQPFMCG 141 (225)
Q Consensus 119 ~l~PNe~fGIaFNGgF-NQPIMCG 141 (225)
.+.+|+.| |.|.| +||||-|
T Consensus 37 ~v~~~~~~---f~ghFp~~Pi~PG 57 (146)
T 3d6x_A 37 NISISDHV---FMGHFPGHPIYPG 57 (146)
T ss_dssp ECCTTBTH---HHHSCTTSCCCCH
T ss_pred EcCCCCCe---ecCCCCCCCcCch
Confidence 47788877 99999 7999977
No 4
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.22 E-value=95 Score=23.34 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=20.5
Q ss_pred eeEEEEeecCCcC-CCceeEEEecCccccc
Q 027300 171 INLIFSFTNGVEW-DGPYRIKFLVPRAWRN 199 (225)
Q Consensus 171 ~~LiFSFTnG~dW-DGpY~L~f~VP~~~~n 199 (225)
+.+..+|+|-..- =--|.+|+.|||.|+=
T Consensus 40 ~~i~~~~~N~s~~~it~f~fQaAVPK~~kL 69 (131)
T 2e9g_A 40 LLITITATNFSEGDVTHFICQAAVPKSLQL 69 (131)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCC
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEE
Confidence 6677788875442 2347889999998863
No 5
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=26.21 E-value=96 Score=23.27 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=22.0
Q ss_pred ceeeEEEEeecCCcC-CCceeEEEecCcccc
Q 027300 169 HAINLIFSFTNGVEW-DGPYRIKFLVPRAWR 198 (225)
Q Consensus 169 HA~~LiFSFTnG~dW-DGpY~L~f~VP~~~~ 198 (225)
..+.+..+|+|-..- =--+.+|..|||.|+
T Consensus 31 ~~~~i~~~fsN~s~~~it~f~fqaAVPKs~k 61 (123)
T 3mnm_A 31 SVIRIXSFFTNLSSSPISNLVFLLAVPKSMS 61 (123)
T ss_dssp SCEEEEEEEEECSSSCEEEEEEEEECCTTSE
T ss_pred CeEEEEEEEecCCCCccccEEEEEecCcccE
Confidence 457788888886543 245789999999875
No 6
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=25.43 E-value=31 Score=25.81 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=12.1
Q ss_pred CCceeEEEecCcc
Q 027300 184 DGPYRIKFLVPRA 196 (225)
Q Consensus 184 DGpY~L~f~VP~~ 196 (225)
||.|||.+..|++
T Consensus 19 dGdYrL~itcpkK 31 (76)
T 2rp4_A 19 DGDYRLAITCPNK 31 (76)
T ss_dssp TTBEEEEEEESCH
T ss_pred CCceEEEEEeCcH
Confidence 8999999999986
No 7
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Probab=23.76 E-value=40 Score=30.52 Aligned_cols=30 Identities=40% Similarity=0.801 Sum_probs=18.3
Q ss_pred CCCCceEEEEccccCCCCCC--Cc-eeeee--cCCCCC
Q 027300 104 MSGEKLKIFYNPYAKKLLPN--ED-FGIGF--NGGFNQ 136 (225)
Q Consensus 104 ~sGe~L~lfyNp~a~~l~PN--e~-fGIaF--NGgFNQ 136 (225)
-.||.++|||.| -+-|- +. =|..+ |||.=|
T Consensus 46 f~G~~itIfY~~---G~yP~~~~~~~g~~~~~NGGiPQ 80 (350)
T 1fcq_A 46 FRGEEIAILYDP---GMFPALLKDPNGNVVARNGGVPQ 80 (350)
T ss_dssp SSSSSEEEEESC---SCCCEEC-------CEETTSSGG
T ss_pred ccCCeEEEEeCC---CCCceeecCCCCCEeecCCCcCC
Confidence 379999999998 56662 11 46666 777655
No 8
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=23.34 E-value=13 Score=28.48 Aligned_cols=21 Identities=52% Similarity=0.887 Sum_probs=16.3
Q ss_pred CCCCCCCceeeeecCCC-CCccccC
Q 027300 118 KKLLPNEDFGIGFNGGF-NQPFMCG 141 (225)
Q Consensus 118 ~~l~PNe~fGIaFNGgF-NQPIMCG 141 (225)
..+.+|+.| |.|.| ++|||=|
T Consensus 58 k~Vt~~e~f---f~GHFp~~PvmPG 79 (171)
T 2gll_A 58 KNITFNEDV---FNGHFPNKPIFPG 79 (171)
T ss_dssp EECCSCSTH---HHHSCTTSCCCCH
T ss_pred EEeCCCCCe---ecCCCCCCCcCch
Confidence 346677766 89999 8999976
No 9
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=21.87 E-value=2.3e+02 Score=20.40 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=31.8
Q ss_pred CCCceEEEeeec-----cceeeEEEEeecCCcCCCceeEEEecCcccccCChhhhhHHHH
Q 027300 156 DSPFYTIQICVP-----KHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKVIT 210 (225)
Q Consensus 156 d~PiYtI~I~vP-----kHA~~LiFSFTnG~dWDGpY~L~f~VP~~~~nkP~~fFnegLa 210 (225)
.++.|+|+|... .+.+.|.|.|+.+-- |-|=.+.+.-++.+...-++...+.|.
T Consensus 44 ~~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP-~~~P~i~l~~~~~L~~~~~~~L~~~L~ 102 (138)
T 2yz0_A 44 PQIIFEITLRSVDKEPVESSITLHFAMTPMYP-YTAPEIEFKNVQNVMDSQLQMLKSEFK 102 (138)
T ss_dssp CCSCEEEEEECSSCSSCCCEEEEEEECCSSTT-SSCCEEEEECCCSCCSHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCCCCCceEEEEEEECCCCCC-CCCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 467788887642 357788888888765 555556665555443333444444443
No 10
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens}
Probab=21.31 E-value=36 Score=31.60 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=19.4
Q ss_pred CCCCceEEEEccccC---CCCCCCceeeeecCCCCC
Q 027300 104 MSGEKLKIFYNPYAK---KLLPNEDFGIGFNGGFNQ 136 (225)
Q Consensus 104 ~sGe~L~lfyNp~a~---~l~PNe~fGIaFNGgFNQ 136 (225)
-.||.++|||-|.-- -+.++ |..+|||.=|
T Consensus 47 f~G~~itIfY~~~lG~yP~~~~~---g~~~NGGiPQ 79 (424)
T 2pe4_A 47 FRGPDMTIFYSSQLGTYPYYTPT---GEPVFGGLPQ 79 (424)
T ss_dssp SCCSSEEEECTTSSSCCCEECTT---SCEETTSSGG
T ss_pred cCCCeEEEEECCCCCCCceEcCC---CCcccCCcCC
Confidence 469999999987211 12222 5667887755
No 11
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=20.60 E-value=87 Score=24.07 Aligned_cols=28 Identities=14% Similarity=0.282 Sum_probs=19.6
Q ss_pred eeEEEEeecCCcC-CCceeEEEecCcccc
Q 027300 171 INLIFSFTNGVEW-DGPYRIKFLVPRAWR 198 (225)
Q Consensus 171 ~~LiFSFTnG~dW-DGpY~L~f~VP~~~~ 198 (225)
+.+..+|+|-..- =--|.+|+.|||.|+
T Consensus 49 ~~i~~~f~N~s~~~it~f~fQaAVPKs~k 77 (140)
T 1gyu_A 49 TVITIQASNSTELDMTDFVFQAAVPKTFQ 77 (140)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTCE
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccE
Confidence 5566778775442 235788899999886
No 12
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=20.26 E-value=56 Score=26.27 Aligned_cols=59 Identities=22% Similarity=0.502 Sum_probs=38.4
Q ss_pred cccccCCCccccceeEeeceeeeeeeecCCChhccccccCCcchhhccCCCceEEEecCCCCCCCCC-------------
Q 027300 41 GASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGE------------- 107 (225)
Q Consensus 41 g~~l~~s~~~~~~~vr~~~~v~aaaa~at~~~e~~~ey~lPsWa~FElG~apVyWkT~nGlpP~sGe------------- 107 (225)
..-+-|--+.++..|||..+. . -.|| ..|-.+||=....+||.+.+
T Consensus 51 tPPl~rl~p~~~q~lRI~~~~-~--------------~~lP------~DrEslf~lnv~eIPp~~~~~~~~n~lqia~r~ 109 (205)
T 1klf_A 51 TPPLFAMKGKKENTLRILDAT-N--------------NQLP------QDRESLFWMNVKAIPSMDKSKLTENTLQLAIIS 109 (205)
T ss_dssp ESSEEEECSSEEEEEEEEECS-C--------------SCSC------SSSCEEEEEEEEEECCCCTTSTTSCEEEEEEEE
T ss_pred cCCeEEECCCCceEEEEEecC-C--------------CCCC------CCceEEEEEEeEecCCCCccccCCceEEEEeee
Confidence 344555666777777765421 0 0133 24567999999999997532
Q ss_pred ceEEEEccccCCC
Q 027300 108 KLKIFYNPYAKKL 120 (225)
Q Consensus 108 ~L~lfyNp~a~~l 120 (225)
++||||-|++-+-
T Consensus 110 riKlFyRP~~l~~ 122 (205)
T 1klf_A 110 RIKLYYRPAKLAL 122 (205)
T ss_dssp EEEEEEECTTCSS
T ss_pred eeeEEEcccccCC
Confidence 4899999987643
Done!