Query 027300
Match_columns 225
No_of_seqs 17 out of 19
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 12:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027300.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027300hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gf3a2 d.16.1.3 (A:218-321) S 78.9 0.8 5.8E-05 31.1 3.3 42 82-123 15-61 (104)
2 d3bmva2 b.3.1.1 (A:579-683) Cy 59.7 22 0.0016 23.9 8.2 85 105-195 2-93 (105)
3 d1fcqa_ c.1.8.9 (A:) Bee venom 43.3 6.4 0.00047 33.2 2.8 30 104-136 37-71 (321)
4 d1bhga2 b.18.1.5 (A:22-225) be 41.4 2.3 0.00017 31.3 -0.3 15 187-201 80-94 (204)
5 d1qhoa2 b.3.1.1 (A:577-686) Cy 24.3 46 0.0033 22.2 4.2 75 106-186 3-83 (110)
6 d1yfna1 b.136.1.1 (A:4-111) St 22.2 19 0.0014 26.0 1.9 51 108-181 47-97 (108)
7 d2j2za1 b.1.11.1 (A:1-124) Pil 21.4 26 0.0019 24.2 2.5 32 89-120 81-122 (124)
8 d1g2914 b.40.6.3 (1:302-372) M 21.2 45 0.0033 20.2 3.4 35 86-120 27-61 (71)
9 d2qlvb1 b.1.18.21 (B:161-247) 19.4 40 0.0029 21.6 2.9 34 128-168 17-50 (87)
10 d3d85d3 b.1.2.1 (D:212-305) Th 19.4 89 0.0065 19.3 4.7 38 154-193 1-42 (94)
No 1
>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}
Probab=78.91 E-value=0.8 Score=31.09 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=29.6
Q ss_pred cchhhccCCCceE-EEecC----CCCCCCCCceEEEEccccCCCCCC
Q 027300 82 SWAMFELGKAPVY-WKTMN----GLPPMSGEKLKIFYNPYAKKLLPN 123 (225)
Q Consensus 82 sWa~FElG~apVy-WkT~n----GlpP~sGe~L~lfyNp~a~~l~PN 123 (225)
....|..++.||| |+..+ |+|..-|..+||.+.=...-..|+
T Consensus 15 ~~~~~~~~~fP~fi~~~~~~~~YGfP~~~~~g~Ki~~~~~g~~~dPd 61 (104)
T d2gf3a2 15 ESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPD 61 (104)
T ss_dssp HHHHBGGGTCCEEEEEETTEEEEEECBSTTCCEEEEESSCCEECCTT
T ss_pred CccccccCCCCEEEEECCCCeEEecCCCCCCceEEEEecCCCccCcc
Confidence 3456677788887 77766 899999999999886333333443
No 2
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
Probab=59.68 E-value=22 Score=23.93 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=55.7
Q ss_pred CCCceEEEEccccCCCCCCCceeeeecCCCCCccccCCchhhh-hhh-hhCCCCCCceEEEeeeccceeeEEEEee----
Q 027300 105 SGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAM-LRK-NRGQNDSPFYTIQICVPKHAINLIFSFT---- 178 (225)
Q Consensus 105 sGe~L~lfyNp~a~~l~PNe~fGIaFNGgFNQPIMCGGEPR~M-~~k-~RGkad~PiYtI~I~vPkHA~~LiFSFT---- 178 (225)
+|++..+-|.=.-.++.+++.-.|.- |.|-+..-+|... .++ ..+..+.|++++.|+||.. ..++|-|-
T Consensus 2 ~~~~v~V~F~v~~~~t~~Gq~v~vvG----s~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~-~~~eYKyv~~~~ 76 (105)
T d3bmva2 2 TGNQICVRFVVNNASTVYGENVYLTG----NVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAG-TTIQFKFIKKNG 76 (105)
T ss_dssp SSSEEEEEEEEESCCCCTTCEEEEEE----SSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETT-CEEEEEEEEESS
T ss_pred CCCEEEEEEEEcccccCCCCEEEEEe----CcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCC-CeEEEEEEEEcC
Confidence 46777777765545677888765553 3677777777433 333 4566678999999999985 47888874
Q ss_pred cCCcCC-CceeEEEecCc
Q 027300 179 NGVEWD-GPYRIKFLVPR 195 (225)
Q Consensus 179 nG~dWD-GpY~L~f~VP~ 195 (225)
+.+.|. ||=| ++.||.
T Consensus 77 ~~~~WE~g~NR-~~~~p~ 93 (105)
T d3bmva2 77 NTITWEGGSNH-TYTVPS 93 (105)
T ss_dssp SCCEECCSSCE-EEECCS
T ss_pred CeEEEcCCCCE-EEEcCC
Confidence 455563 3433 445554
No 3
>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis mellifera) [TaxId: 7460]}
Probab=43.27 E-value=6.4 Score=33.17 Aligned_cols=30 Identities=40% Similarity=0.864 Sum_probs=19.9
Q ss_pred CCCCceEEEEccccCCCCCC--Cce-e--eeecCCCCC
Q 027300 104 MSGEKLKIFYNPYAKKLLPN--EDF-G--IGFNGGFNQ 136 (225)
Q Consensus 104 ~sGe~L~lfyNp~a~~l~PN--e~f-G--IaFNGgFNQ 136 (225)
-.||.++|||.+ -|-|- ++= | +.+|||.=|
T Consensus 37 f~Gq~itIFY~~---G~yP~~~~~~~~~~~~~NGGlPQ 71 (321)
T d1fcqa_ 37 FRGEEIAILYDP---GMFPALLKDPNGNVVARNGGVPQ 71 (321)
T ss_dssp SSSSSEEEEESC---SCCCEEC-------CEETTSSGG
T ss_pred ccCCeEEEEeCC---CCCcceEeCCCCceeeecCCCCC
Confidence 369999999976 67772 221 1 577888766
No 4
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.37 E-value=2.3 Score=31.32 Aligned_cols=15 Identities=20% Similarity=0.711 Sum_probs=13.5
Q ss_pred eeEEEecCcccccCC
Q 027300 187 YRIKFLVPRAWRNKP 201 (225)
Q Consensus 187 Y~L~f~VP~~~~nkP 201 (225)
||-+|.||+.|.+.+
T Consensus 80 Yrr~f~vp~~~~~~~ 94 (204)
T d1bhga2 80 YEREVILPERWTQDL 94 (204)
T ss_dssp EEEEEECCTTTTSCS
T ss_pred EEEEEEEcccccccC
Confidence 999999999998765
No 5
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}
Probab=24.29 E-value=46 Score=22.19 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=41.8
Q ss_pred CCceEEEEccccCC-CCCCCceeeeecCCCCCccccCCchhhhhh-hhh-C---CCCCCceEEEeeeccceeeEEEEeec
Q 027300 106 GEKLKIFYNPYAKK-LLPNEDFGIGFNGGFNQPFMCGGEPRAMLR-KNR-G---QNDSPFYTIQICVPKHAINLIFSFTN 179 (225)
Q Consensus 106 Ge~L~lfyNp~a~~-l~PNe~fGIaFNGgFNQPIMCGGEPR~M~~-k~R-G---kad~PiYtI~I~vPkHA~~LiFSFTn 179 (225)
|.+-++-|+=.+.. -.|++.-.|. | |.|-+..-+|....+ +.- | ..+.|++++.|.+|.- ..++|-|.-
T Consensus 3 ~~~~~V~f~v~~~~~T~~Gq~v~iv--G--~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~-~~~eYKyvi 77 (110)
T d1qhoa2 3 GTQTSVVFTVKSAPPTNLGDKIYLT--G--NIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAG-KTIQFKFFI 77 (110)
T ss_dssp SSEEEEEEEEESCCCCCTTCEEEEE--E--SSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETT-CEEEEEEEE
T ss_pred CCceEEEEEEeCcccCCCCCEEEEE--e--CcHHHCCCChhhccccccccCccccccCCeEEEEEEECCC-CEEEEEEEE
Confidence 44444444433332 2345554443 3 455666666643222 211 1 3467999999999985 578998863
Q ss_pred CCcCCCc
Q 027300 180 GVEWDGP 186 (225)
Q Consensus 180 G~dWDGp 186 (225)
+|+||.
T Consensus 78 -~~~~g~ 83 (110)
T d1qhoa2 78 -KRADGT 83 (110)
T ss_dssp -ECTTSC
T ss_pred -EcCCCC
Confidence 345554
No 6
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=22.21 E-value=19 Score=26.01 Aligned_cols=51 Identities=33% Similarity=0.498 Sum_probs=38.0
Q ss_pred ceEEEEccccCCCCCCCceeeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEeecCC
Q 027300 108 KLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGV 181 (225)
Q Consensus 108 ~L~lfyNp~a~~l~PNe~fGIaFNGgFNQPIMCGGEPR~M~~k~RGkad~PiYtI~I~vPkHA~~LiFSFTnG~ 181 (225)
++.|=..|.|.+=.-=++=+|.|+.-| ||.|| +|.||-+|+--||+=-||.
T Consensus 47 ~IvLNIsp~Av~~L~i~nd~IsF~aRF------~G~~~-----------------~i~vP~~AV~aIyarEnG~ 97 (108)
T d1yfna1 47 QIVLNIAPRAVGNLELANDEVRFNARF------GGIPR-----------------QVSVPLAAVLAIYARENGA 97 (108)
T ss_dssp EEEEECSGGGCEEEEECSSEEEEEEEE------TTEEE-----------------EEEEEGGGEEEEEETTTCC
T ss_pred eEEEEcChhhccCEEEcCCEEEEEEEE------CCeeE-----------------EEEEEHHHhheeeecccCC
Confidence 566767777654333344479999988 46654 6899999999999999885
No 7
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}
Probab=21.40 E-value=26 Score=24.21 Aligned_cols=32 Identities=31% Similarity=0.701 Sum_probs=24.1
Q ss_pred CCCceEEEecCCCCCCCCC----------ceEEEEccccCCC
Q 027300 89 GKAPVYWKTMNGLPPMSGE----------KLKIFYNPYAKKL 120 (225)
Q Consensus 89 G~apVyWkT~nGlpP~sGe----------~L~lfyNp~a~~l 120 (225)
.+--+||=.-.++||...+ .+||||-|+.=+-
T Consensus 81 drEs~~~l~i~~IP~~~~~~~~l~i~~r~~iklFyRP~~l~~ 122 (124)
T d2j2za1 81 DRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKT 122 (124)
T ss_dssp SSCEEEEEEEEEECCCCCCSSEEEEEEEEEEEEEEECGGGCC
T ss_pred ceeEEEEEEEEecCCCCCCCCEEEEEEeeEEEEEECCccCCC
Confidence 4556899999999987654 4789999987443
No 8
>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=21.19 E-value=45 Score=20.20 Aligned_cols=35 Identities=6% Similarity=0.097 Sum_probs=28.6
Q ss_pred hccCCCceEEEecCCCCCCCCCceEEEEccccCCC
Q 027300 86 FELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKL 120 (225)
Q Consensus 86 FElG~apVyWkT~nGlpP~sGe~L~lfyNp~a~~l 120 (225)
+++|..++.=++........||.+.|.+||.---|
T Consensus 27 ~~~~~~~i~~~~~~~~~~~~G~~v~l~~~~~~~hl 61 (71)
T d1g2914 27 LRVGGVTFVGSFRSESRVREGVEVDVVFDMKKIHI 61 (71)
T ss_dssp EEETTEEEEEEECTTCCCCTTCEEEEEECGGGCEE
T ss_pred EEECCEEEEEEECCCCCCCCCCEEEEEECcccEEE
Confidence 46677788888899999999999999998875443
No 9
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=19.39 E-value=40 Score=21.57 Aligned_cols=34 Identities=9% Similarity=0.161 Sum_probs=19.1
Q ss_pred eeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeecc
Q 027300 128 IGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPK 168 (225)
Q Consensus 128 IaFNGgFNQPIMCGGEPR~M~~k~RGkad~PiYtI~I~vPk 168 (225)
|-..|.||. =.++.++++... +.-.|++.|.+|.
T Consensus 17 V~v~GsFn~-----W~~~~~~~~~~~--~~g~~~~~l~l~~ 50 (87)
T d2qlvb1 17 VYVTGSFTK-----WRKMIGLIPDSD--NNGSFHVKLRLLP 50 (87)
T ss_dssp EEEEEGGGT-----TSSCEECEECSS--STTCEEEEEEECS
T ss_pred EEEEEEecC-----cCcccccccccC--CCccEEEEEeCCC
Confidence 556688873 334433333221 2346899888885
No 10
>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.38 E-value=89 Score=19.29 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=21.7
Q ss_pred CCCCCceEEEeee-ccceeeEEEEeecCCcCCCc---eeEEEec
Q 027300 154 QNDSPFYTIQICV-PKHAINLIFSFTNGVEWDGP---YRIKFLV 193 (225)
Q Consensus 154 kad~PiYtI~I~v-PkHA~~LiFSFTnG~dWDGp---Y~L~f~V 193 (225)
|-|||. -+++.. +.+ -.|..+.+.-..|+.+ |.|+++|
T Consensus 1 KPdPP~-nl~v~~~~~~-~~l~v~W~~P~~~~~~~~~~~L~Yev 42 (94)
T d3d85d3 1 KPDPPK-NLQLKPLKNS-RQVEVSWEYPDTWSTPHSYFSLTFCV 42 (94)
T ss_dssp CCCCCE-EEEEEEC-----CEEEEEECCTTSCSCTTTSCEEEEE
T ss_pred CCCCCc-ccEEEEecCC-CeEEEEecCCCCcCCCCCeEEEEEEE
Confidence 457774 344432 332 3477888888888866 3555555
Done!