Query 027301
Match_columns 225
No_of_seqs 236 out of 968
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:53:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00187 photosystem II light- 100.0 3.4E-39 7.3E-44 291.6 11.4 158 15-205 6-206 (286)
2 PLN00025 photosystem II light 100.0 8.7E-37 1.9E-41 273.2 11.7 130 72-205 43-175 (262)
3 PLN00171 photosystem light-ha 100.0 6.4E-35 1.4E-39 267.2 9.9 134 69-205 97-235 (324)
4 PLN00098 light-harvesting comp 100.0 1.5E-33 3.2E-38 253.1 11.3 116 72-206 54-169 (267)
5 PLN00101 Photosystem I light-h 100.0 2.9E-33 6.2E-38 249.2 11.6 115 73-206 46-160 (250)
6 PLN00097 photosystem I light h 100.0 4.5E-33 9.8E-38 247.2 9.8 124 77-218 41-168 (244)
7 PLN00048 photosystem I light h 100.0 2E-32 4.3E-37 245.2 9.7 121 75-207 37-164 (262)
8 PLN00170 photosystem II light- 100.0 2E-30 4.4E-35 231.5 10.5 114 78-208 49-163 (255)
9 PLN00147 light-harvesting comp 100.0 2.6E-29 5.6E-34 224.1 9.9 113 75-205 40-152 (252)
10 PLN00099 light-harvesting comp 100.0 7.8E-29 1.7E-33 220.1 9.1 115 78-205 42-158 (243)
11 PLN00100 light-harvesting comp 100.0 9.9E-29 2.2E-33 219.6 9.3 104 78-206 33-136 (246)
12 PF00504 Chloroa_b-bind: Chlor 99.8 1.3E-20 2.8E-25 154.7 7.6 96 94-205 1-98 (156)
13 PLN00089 fucoxanthin-chlorophy 99.7 5.3E-17 1.1E-21 141.8 7.6 57 95-152 47-104 (209)
14 PLN00147 light-harvesting comp 99.6 5.5E-16 1.2E-20 138.8 5.4 59 95-153 172-230 (252)
15 PLN00089 fucoxanthin-chlorophy 99.6 1.3E-15 2.8E-20 133.1 5.1 54 100-153 153-207 (209)
16 PLN00048 photosystem I light h 99.5 2.2E-15 4.8E-20 135.6 3.8 54 100-153 187-240 (262)
17 PLN00025 photosystem II light 99.5 1E-14 2.2E-19 131.3 4.4 55 99-154 183-237 (262)
18 PLN00187 photosystem II light- 99.5 2.4E-14 5.2E-19 130.3 4.5 54 100-153 212-265 (286)
19 PLN00099 light-harvesting comp 99.5 3.6E-14 7.8E-19 126.6 4.4 53 100-153 164-217 (243)
20 PLN00098 light-harvesting comp 99.5 5.2E-14 1.1E-18 127.1 4.6 53 101-153 192-245 (267)
21 PF00504 Chloroa_b-bind: Chlor 99.4 1.4E-13 3.1E-18 113.1 4.2 50 97-146 107-156 (156)
22 PLN00171 photosystem light-ha 99.4 2.4E-13 5.3E-18 125.4 4.8 52 102-153 252-303 (324)
23 PLN00097 photosystem I light h 99.4 2.6E-13 5.7E-18 121.2 4.5 47 108-154 182-228 (244)
24 PLN00120 fucoxanthin-chlorophy 99.4 9.5E-13 2.1E-17 114.6 6.8 39 108-146 47-87 (202)
25 PLN00100 light-harvesting comp 99.3 1.1E-12 2.3E-17 117.4 3.5 49 101-154 143-191 (246)
26 PLN00120 fucoxanthin-chlorophy 99.3 2.1E-12 4.6E-17 112.4 4.9 51 100-150 142-195 (202)
27 PLN00101 Photosystem I light-h 99.2 4.6E-12 1E-16 113.6 3.4 47 102-153 184-230 (250)
28 PLN00170 photosystem II light- 99.2 6.7E-12 1.5E-16 112.8 4.2 51 102-153 191-250 (255)
29 PHA02337 putative high light i 98.0 5E-06 1.1E-10 54.5 2.2 29 124-152 3-31 (35)
30 PLN00014 light-harvesting-like 97.3 8.3E-05 1.8E-09 66.8 0.8 31 123-153 159-189 (250)
31 PLN00084 photosystem II subuni 96.3 0.0023 5.1E-08 55.6 2.0 35 119-153 131-166 (214)
No 1
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=3.4e-39 Score=291.63 Aligned_cols=158 Identities=30% Similarity=0.595 Sum_probs=126.8
Q ss_pred cchhhcCCccccccccccCCCCCCCCCCCceeEeeccCCCCCCCCCCCCcCCCchhhhhhhhcCCCcCccCcCccCCCCC
Q 027301 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEI 94 (225)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~k~~~~~~~k~~a~~~~~~~~~~wyg~~R~~~lp~G~~~~~~~ 94 (225)
..|.|+|.++.. +.++..+++++|+.++...++ ++++ +...+|+++|++|||+ .++
T Consensus 6 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~r~~w~p~-----~~~ 61 (286)
T PLN00187 6 AASSFMGTRVPD-----------VASNSGRIVARFGFGKKKKAA-KKAK-------KKSSKVGADRPLWFPG-----AKA 61 (286)
T ss_pred cchhhhhhhhcc-----------cccCccchhhhhccCcccccC-Cccc-------cCccCCCCCccccCCC-----CCC
Confidence 347788888742 344678888988743221111 1111 1246789999999996 899
Q ss_pred CCCCCCCCCCCCccCCCCCCCChhh-------------------------------------------HHHHHHHHhhhh
Q 027301 95 PEYLTGEVPGDYGYDPFGLSKKPDD-------------------------------------------FSKYQAYELIHA 131 (225)
Q Consensus 95 P~yL~G~~PGD~GfDPlGL~~dpe~-------------------------------------------~~~~r~~EL~hG 131 (225)
|+||||++||||||||+||+++||. ++|||++||+||
T Consensus 62 P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHG 141 (286)
T PLN00187 62 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHG 141 (286)
T ss_pred cccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhh
Confidence 9999999999999999999999986 599999999999
Q ss_pred hhhHhhhhhhhhhhhhccCCCCCCCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHHhhhhhhccC
Q 027301 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (225)
Q Consensus 132 R~AMLg~~G~lv~e~l~~~G~~~~p~~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~g 205 (225)
||||||++||+++|+++ +..||++|.+.+..+ .+|++++.++.+..++++|+++||++|.+|+.+
T Consensus 142 RwAMLAvaG~lvpEll~--------G~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~ 206 (286)
T PLN00187 142 RWAMLATLGALSVEALT--------GVTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE 206 (286)
T ss_pred HHHHHHhhchhhHHhcc--------CCccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999985 236999998765433 469999888877888899999999999999875
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=8.7e-37 Score=273.24 Aligned_cols=130 Identities=45% Similarity=0.889 Sum_probs=114.3
Q ss_pred hhhhhcCCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCC
Q 027301 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (225)
Q Consensus 72 ~~~wyg~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G 151 (225)
.+.|||+||++||| +++ .++|+||||++||||||||+||++|+++++|||++||+||||||||++||+++|++++.|
T Consensus 43 ~~~~~g~~R~~~l~--p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 43 GSIWYGPDRPKYLG--PFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cccccCCCCccccC--Ccc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 45799999999993 444 589999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCcccccccccccCCCccccCCCCchh---hHHHHHHHHHHHHHhhhhhhccC
Q 027301 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITN 205 (225)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~g~~l~Ylg~p~p~---~~~~li~~evvLmG~~E~~R~~g 205 (225)
+... +++||++|+.++..++++|++++..+ .+..++++|+++||++|.+|+++
T Consensus 120 ~~~~-~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~ 175 (262)
T PLN00025 120 VKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNG 175 (262)
T ss_pred cCcC-cccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccC
Confidence 7532 56899999988877789999988654 34556778999999999999876
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=6.4e-35 Score=267.17 Aligned_cols=134 Identities=41% Similarity=0.782 Sum_probs=116.2
Q ss_pred hhhhhhhhcCCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhc
Q 027301 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148 (225)
Q Consensus 69 ~~~~~~wyg~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~ 148 (225)
+++.+.|||++|++|||+ ++ .++|+||||++||||||||+||++|+++++|||++||+||||||||++|+++||+++
T Consensus 97 ~~~~~~~~g~~R~~wl~~--~~-~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~ 173 (324)
T PLN00171 97 ARNESFWYGEERPRWLGP--IP-YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLD 173 (324)
T ss_pred hcccCcccCCCCccccCC--CC-CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhc
Confidence 567789999999999964 22 479999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccccccccCCCccccCCCCch-----hhHHHHHHHHHHHHHhhhhhhccC
Q 027301 149 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITN 205 (225)
Q Consensus 149 ~~G~~~~p~~~Wf~AG~~~~~g~~l~Ylg~p~p-----~~~~~li~~evvLmG~~E~~R~~g 205 (225)
+.|....++++||++|...+++..++|++.+.. ..+..+.++|+++|+++|++|+.+
T Consensus 174 ~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~ 235 (324)
T PLN00171 174 LFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCG 235 (324)
T ss_pred cCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeecc
Confidence 888765556799999988777777888887642 134456678999999999999876
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=1.5e-33 Score=253.07 Aligned_cols=116 Identities=37% Similarity=0.759 Sum_probs=102.8
Q ss_pred hhhhhcCCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCC
Q 027301 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (225)
Q Consensus 72 ~~~wyg~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G 151 (225)
.+.+|+++|++|+|+ .++|+||||++||||||||+||++|+++++|||++||+||||||||++|+++||++++.|
T Consensus 54 ~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g 128 (267)
T PLN00098 54 VCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG 128 (267)
T ss_pred ccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 456799999999996 789999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHHhhhhhhccCC
Q 027301 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 206 (225)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~gg 206 (225)
++. +..||++|+. +|++++. .++++|+++||++|.+||++-
T Consensus 129 ~~~--~~~w~~Ag~~-------~~~~~~~-----~l~~~q~~lmG~~E~~R~~~~ 169 (267)
T PLN00098 129 FIE--NFSWYDAGAR-------EYFADPT-----TLFVVQMVLMGWAEGRRWADL 169 (267)
T ss_pred ccc--ccccccccch-------hhccCch-----HHHHHHHHHHHHHHHHHhhcc
Confidence 754 3579999874 4776652 356789999999999999774
No 5
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=249.23 Aligned_cols=115 Identities=33% Similarity=0.687 Sum_probs=101.7
Q ss_pred hhhhcCCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCC
Q 027301 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (225)
Q Consensus 73 ~~wyg~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~ 152 (225)
+.+++.+|.+|+|+ .++|+||||++||||||||+||++|+++++++|++||+||||||||++|+++||++++.|+
T Consensus 46 ~~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~ 120 (250)
T PLN00101 46 SFKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120 (250)
T ss_pred cccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCC
Confidence 45666899999996 7899999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHHhhhhhhccCC
Q 027301 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 206 (225)
Q Consensus 153 ~~~p~~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~gg 206 (225)
++. +.||++|+. +|++.+ .+++++|+++||++|.+|+++-
T Consensus 121 ~~~--p~w~~ag~~-------~~~~~~-----~~l~~ie~~~mg~~E~~R~~~~ 160 (250)
T PLN00101 121 INA--PQWYDAGKA-------EYFASS-----STLFVIEFILFHYVEIRRWQDI 160 (250)
T ss_pred cCC--Cccccccch-------hhcccc-----hHHHHHHHHHHHHHHHHHhhcc
Confidence 754 479999875 466654 3467789999999999999863
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=4.5e-33 Score=247.20 Aligned_cols=124 Identities=30% Similarity=0.486 Sum_probs=103.7
Q ss_pred cCCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCCCC
Q 027301 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (225)
Q Consensus 77 g~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~~p 156 (225)
+++|++|||+ .++|+||||++||||||||+||++|+++++|||++||+||||||||++||++||++++.|+..
T Consensus 41 ~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~-- 113 (244)
T PLN00097 41 AADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMAD-- 113 (244)
T ss_pred CCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCccc--
Confidence 3699999996 789999999999999999999999999999999999999999999999999999999888754
Q ss_pred CcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHHhhhhhhccCCCc----cccceeeecc
Q 027301 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLV----IVFVLLLINI 218 (225)
Q Consensus 157 ~~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~ggl~----~~d~~~~~~~ 218 (225)
.++||++|+.. .|+... .+++.+|+++||++|.+||++... ..|++|..|.
T Consensus 114 ~p~W~~Ag~~~------~~~~~~-----~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~ 168 (244)
T PLN00097 114 LPNWIDAAKWD------GYWAGA-----GPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANK 168 (244)
T ss_pred CCccccCCcch------hccccc-----hhHHHHHHHHHHHHHHHHhhcccCCCcccccccccccc
Confidence 35799998752 255432 346778999999999999987432 3355665554
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.97 E-value=2e-32 Score=245.24 Aligned_cols=121 Identities=35% Similarity=0.609 Sum_probs=101.2
Q ss_pred hhcCCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChh------hHHHHHHHHhhhhhhhHhhhhhhhhhhhhc
Q 027301 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------DFSKYQAYELIHARWAMLGAAGFIIPEAFN 148 (225)
Q Consensus 75 wyg~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe------~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~ 148 (225)
+|+++|++|+|+ .++|+||||++||||||||+||+ +|+ +.+++|++||+||||||||++||++||+++
T Consensus 37 ~~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 37 KQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred CCCCCCceecCC-----CCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhc
Confidence 345799999996 89999999999999999999997 443 568899999999999999999999999999
Q ss_pred cCCCCCCC-CcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHHhhhhhhccCCC
Q 027301 149 KFGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL 207 (225)
Q Consensus 149 ~~G~~~~p-~~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~ggl 207 (225)
+.|++... ...||++|+... .+..+|++++ .+++++|+++||++|.+|+++..
T Consensus 111 ~~g~~~~~~~~~w~~ag~~~~-~~~~~y~~~p-----~~l~~~~~~lmg~~E~~R~~~~~ 164 (262)
T PLN00048 111 KAGLIPQETALPWFQSGVIPP-AGTYDYWADP-----YTLFVLEMALMGFAEHRRAQDYY 164 (262)
T ss_pred cCCcccccccccccccccccc-ccccccccch-----hHHHHHHHHHhhheeeecccccc
Confidence 98876422 346999998533 4456798885 24567899999999999998743
No 8
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.97 E-value=2e-30 Score=231.49 Aligned_cols=114 Identities=32% Similarity=0.583 Sum_probs=93.4
Q ss_pred CCCcCccCcC-ccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCCCC
Q 027301 78 PDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (225)
Q Consensus 78 ~~R~~~lp~G-~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~~p 156 (225)
.+|+.|+|+- +-+...+|+||||++||||||||++|++|++++++||++||+||||||||++||++||++++
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g------- 121 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG------- 121 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC-------
Confidence 4788899841 01123579999999999999999999999999999999999999999999999999999863
Q ss_pred CcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHHhhhhhhccCCCc
Q 027301 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLV 208 (225)
Q Consensus 157 ~~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~ggl~ 208 (225)
..||++|+.. .++ .|+++.+++++|+++||++|.+||++..+
T Consensus 122 -~~w~~aG~~~------~~~---~p~~~~~l~~~q~~lmg~~E~~R~~~~~~ 163 (255)
T PLN00170 122 -IPWFEAGADP------GAI---APFSFGSLLGTQLLLMGWVESKRWVDFFN 163 (255)
T ss_pred -CChhhCCccc------ccc---CccchHHHHHHHHHHhhhhhheeeccccC
Confidence 3599998752 122 13345677889999999999999988543
No 9
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.96 E-value=2.6e-29 Score=224.14 Aligned_cols=113 Identities=31% Similarity=0.627 Sum_probs=96.3
Q ss_pred hhcCCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCC
Q 027301 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (225)
Q Consensus 75 wyg~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~ 154 (225)
.++++|++|+|+ .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||+++..|.+.
T Consensus 40 ~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~ 114 (252)
T PLN00147 40 VVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRN 114 (252)
T ss_pred cCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcC
Confidence 455799999995 789999999999999999999999999999999999999999999999999999998877754
Q ss_pred CCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHHhhhhhhccC
Q 027301 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (225)
Q Consensus 155 ~p~~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~g 205 (225)
. +.||++|...+ .+..+ .+++++|+++||++|.+|+.+
T Consensus 115 ~--p~w~~ag~~~~------~~~~~-----~~~~~~q~~~mG~~E~~R~~~ 152 (252)
T PLN00147 115 L--PVWYEAGAVKF------EFAST-----RTLFVVQLLLMGFAETKRYMD 152 (252)
T ss_pred C--cchhhcccchh------ccccc-----hHHHHHHHHHHHHHHHHhhcc
Confidence 3 47999886432 12221 345678999999999999865
No 10
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.95 E-value=7.8e-29 Score=220.12 Aligned_cols=115 Identities=32% Similarity=0.685 Sum_probs=98.5
Q ss_pred CCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCCCCC
Q 027301 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (225)
Q Consensus 78 ~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~~p~ 157 (225)
.+|..|+|+ .++|+||||++||||||||+||++++++++|||++||+||||||||++|+++||+++.
T Consensus 42 ~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------- 108 (243)
T PLN00099 42 TMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------- 108 (243)
T ss_pred cccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------
Confidence 478899996 7899999999999999999999999999999999999999999999999999999752
Q ss_pred ccccccccc-ccCCCccccCCCCchh-hHHHHHHHHHHHHHhhhhhhccC
Q 027301 158 AVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITN 205 (225)
Q Consensus 158 ~~Wf~AG~~-~~~g~~l~Ylg~p~p~-~~~~li~~evvLmG~~E~~R~~g 205 (225)
..||++++. ...++..+|++++.++ .+..++++|+++||++|.+|+..
T Consensus 109 ~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~ 158 (243)
T PLN00099 109 GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME 158 (243)
T ss_pred CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 258888763 3445567799888766 35567788999999999998653
No 11
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.95 E-value=9.9e-29 Score=219.65 Aligned_cols=104 Identities=31% Similarity=0.576 Sum_probs=89.8
Q ss_pred CCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCCCCC
Q 027301 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (225)
Q Consensus 78 ~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~~p~ 157 (225)
.+|++|+|+ .++|+||||++||||||||+||++++++++++|++||+||||||||++|++++|+++ .
T Consensus 33 ~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~--------~ 99 (246)
T PLN00100 33 RARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG--------L 99 (246)
T ss_pred CCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc--------c
Confidence 489999996 789999999999999999999999999999999999999999999999999999975 2
Q ss_pred cccccccccccCCCccccCCCCchhhHHHHHHHHHHHHHhhhhhhccCC
Q 027301 158 AVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 206 (225)
Q Consensus 158 ~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~gg 206 (225)
+.||++|... |..+ ..+++++|+++||++|.+|+++.
T Consensus 100 P~w~~ag~~~-------~~~~-----~~~l~~iqill~g~~E~~r~~~~ 136 (246)
T PLN00100 100 PKFWEAGAEK-------YGLD-----LQTLVLIQVVVMAVLEAARYRGF 136 (246)
T ss_pred cchhhcchhh-------hccc-----hhHHHHHHHHHHHHHhhhccccc
Confidence 3599987642 3222 23466789999999999998863
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.82 E-value=1.3e-20 Score=154.70 Aligned_cols=96 Identities=38% Similarity=0.679 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCC--CCCcccccccccccCCC
Q 027301 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLDGN 171 (225)
Q Consensus 94 ~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~--~p~~~Wf~AG~~~~~g~ 171 (225)
+|+||||+++||+||||+||++++ +++|+|+.||+|||+||||++|++++|++++.+... ...+.|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 589999999999999999999887 999999999999999999999999999998754321 11234766441
Q ss_pred ccccCCCCchhhHHHHHHHHHHHHHhhhhhhccC
Q 027301 172 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (225)
Q Consensus 172 ~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~g 205 (225)
+ +.+ ...++..++++|.+|.+|..+
T Consensus 74 -~-----~~~---~~~~~~~l~~ig~~e~~~~~~ 98 (156)
T PF00504_consen 74 -I-----PVP---AAGWAQILLFIGALEPWRQQG 98 (156)
T ss_dssp -S-----SSH---SHHHHHHHHHHHHHHHHHHHH
T ss_pred -h-----hhh---hHHHHHHHHHHhHhhhhhccc
Confidence 1 111 112335678899999988765
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.68 E-value=5.3e-17 Score=141.80 Aligned_cols=57 Identities=33% Similarity=0.546 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCccCCCCCCC-ChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCC
Q 027301 95 PEYLTGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (225)
Q Consensus 95 P~yL~G~~PGD~GfDPlGL~~-dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~ 152 (225)
|.-|+|. .||++|||+||++ ++++++|+|++||+|||+||||++|+++||.++..|.
T Consensus 47 ~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 47 EFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred CccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 4468898 9999999999985 6788999999999999999999999999999876553
No 14
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.61 E-value=5.5e-16 Score=138.84 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCC
Q 027301 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (225)
Q Consensus 95 P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (225)
+..+++.+|||++|||+||.+|+++++++|++||+||||||+|++|+++|+++++.|++
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~ 230 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPI 230 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Confidence 34566779999999999999999999999999999999999999999999999998875
No 15
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.58 E-value=1.3e-15 Score=133.11 Aligned_cols=54 Identities=30% Similarity=0.510 Sum_probs=50.2
Q ss_pred CCCCCCCccCCCCC-CCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCC
Q 027301 100 GEVPGDYGYDPFGL-SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (225)
Q Consensus 100 G~~PGD~GfDPlGL-~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (225)
++.||||||||+|| .+|+++++++|.+||+||||||+|++|+++||++++.|+.
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 47899999999999 4689999999999999999999999999999999988764
No 16
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.55 E-value=2.2e-15 Score=135.56 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=51.4
Q ss_pred CCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCC
Q 027301 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (225)
Q Consensus 100 G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (225)
..+|||++|||+||++|+|+++++|++||+||||||+|++||++|+++++.|++
T Consensus 187 ~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~ 240 (262)
T PLN00048 187 PAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPF 240 (262)
T ss_pred cccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHH
Confidence 359999999999999999999999999999999999999999999999998875
No 17
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.51 E-value=1e-14 Score=131.33 Aligned_cols=55 Identities=29% Similarity=0.546 Sum_probs=51.6
Q ss_pred CCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCC
Q 027301 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (225)
Q Consensus 99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~ 154 (225)
|..+|||+ |||+||++|+++++++|.+||+||||||++++||++|+++|+.|++.
T Consensus 183 d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPle 237 (262)
T PLN00025 183 DPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 237 (262)
T ss_pred cCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHH
Confidence 44799999 99999999999999999999999999999999999999999998763
No 18
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.48 E-value=2.4e-14 Score=130.30 Aligned_cols=54 Identities=33% Similarity=0.485 Sum_probs=51.2
Q ss_pred CCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCC
Q 027301 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (225)
Q Consensus 100 G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (225)
..+|||++|||+||++|+++++++|++||+||||||+|++||++|+++++.|++
T Consensus 212 ~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 212 RLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred CCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 348999999999999999999999999999999999999999999999998875
No 19
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.46 E-value=3.6e-14 Score=126.62 Aligned_cols=53 Identities=34% Similarity=0.703 Sum_probs=48.9
Q ss_pred CCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhh-hhccCCCC
Q 027301 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNKFGAN 153 (225)
Q Consensus 100 G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e-~l~~~G~~ 153 (225)
+.+||| +|||+|+.+|+++++++|.+||+|||+||+|++|+++|+ ++++.|++
T Consensus 164 ~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl 217 (243)
T PLN00099 164 KKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 217 (243)
T ss_pred CcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence 468999 899999999999999999999999999999999999999 46787775
No 20
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.45 E-value=5.2e-14 Score=127.06 Aligned_cols=53 Identities=25% Similarity=0.442 Sum_probs=50.1
Q ss_pred CCCCCCccCCCCCCC-ChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCC
Q 027301 101 EVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (225)
Q Consensus 101 ~~PGD~GfDPlGL~~-dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (225)
.+|||++|||+||.+ |+++++++|.+||+|||+||+|++|+++|+.+++.|++
T Consensus 192 ~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl 245 (267)
T PLN00098 192 GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPI 245 (267)
T ss_pred CCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChH
Confidence 589999999999974 89999999999999999999999999999999998876
No 21
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.41 E-value=1.4e-13 Score=113.06 Aligned_cols=50 Identities=46% Similarity=0.733 Sum_probs=46.5
Q ss_pred CCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhh
Q 027301 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146 (225)
Q Consensus 97 yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~ 146 (225)
+.++.+|||++|||+|+.+|+++..+++.+||+|||+||+|++|+++||.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56678999999999999999999999999999999999999999999983
No 22
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.39 E-value=2.4e-13 Score=125.43 Aligned_cols=52 Identities=37% Similarity=0.567 Sum_probs=48.0
Q ss_pred CCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCC
Q 027301 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (225)
Q Consensus 102 ~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (225)
+||+++|||+||++|+++++++|++||+||||||+|++|+++|+++++.|++
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPl 303 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPV 303 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChH
Confidence 4555569999999999999999999999999999999999999999998875
No 23
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.38 E-value=2.6e-13 Score=121.17 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=45.3
Q ss_pred cCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCC
Q 027301 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (225)
Q Consensus 108 fDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~ 154 (225)
|||+||.+|+++++++|.+||+|||+||++++|+++|+++|++|++.
T Consensus 182 FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~ 228 (244)
T PLN00097 182 FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVD 228 (244)
T ss_pred CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHH
Confidence 99999999999999999999999999999999999999999999863
No 24
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.37 E-value=9.5e-13 Score=114.59 Aligned_cols=39 Identities=33% Similarity=0.746 Sum_probs=37.3
Q ss_pred cCCCCCC--CChhhHHHHHHHHhhhhhhhHhhhhhhhhhhh
Q 027301 108 YDPFGLS--KKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146 (225)
Q Consensus 108 fDPlGL~--~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~ 146 (225)
|||+||+ +|+++++++|++||+||||||||++|+++||.
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 9999997 47899999999999999999999999999997
No 25
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.30 E-value=1.1e-12 Score=117.43 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=44.2
Q ss_pred CCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCC
Q 027301 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (225)
Q Consensus 101 ~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~ 154 (225)
..||||+|||+||.+ +++|.+||+||||||+|++|+++|+++++.|++.
T Consensus 143 ~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPle 191 (246)
T PLN00100 143 GVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLE 191 (246)
T ss_pred CCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHH
Confidence 468999999999963 5689999999999999999999999999999763
No 26
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.30 E-value=2.1e-12 Score=112.41 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=41.4
Q ss_pred CCCCCCCccC--CCCCCC-ChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccC
Q 027301 100 GEVPGDYGYD--PFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (225)
Q Consensus 100 G~~PGD~GfD--PlGL~~-dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~ 150 (225)
++.||||+++ ++|+.. |+|+.+++|++||+||||||+|++|+++||.+++.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5778865433 333332 78999999999999999999999999999999864
No 27
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.23 E-value=4.6e-12 Score=113.57 Aligned_cols=47 Identities=26% Similarity=0.504 Sum_probs=41.7
Q ss_pred CCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCC
Q 027301 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (225)
Q Consensus 102 ~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (225)
+||+. ||||||+++ ++++++||+||||||+|++|+++|+++|+.|++
T Consensus 184 YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi 230 (250)
T PLN00101 184 YPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPF 230 (250)
T ss_pred CCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChH
Confidence 56654 999999875 367999999999999999999999999999986
No 28
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.22 E-value=6.7e-12 Score=112.82 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=46.6
Q ss_pred CCCCCccCCCCCCC---------ChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCC
Q 027301 102 VPGDYGYDPFGLSK---------KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (225)
Q Consensus 102 ~PGD~GfDPlGL~~---------dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (225)
+||+..|||+||++ |+++++++|.+||+|||+||++++|+++|. .+++|++
T Consensus 191 yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~ 250 (255)
T PLN00170 191 YPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPL 250 (255)
T ss_pred cCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCch
Confidence 78887799999985 789999999999999999999999999999 6888775
No 29
>PHA02337 putative high light inducible protein
Probab=97.96 E-value=5e-06 Score=54.47 Aligned_cols=29 Identities=17% Similarity=0.053 Sum_probs=26.8
Q ss_pred HHHHhhhhhhhHhhhhhhhhhhhhccCCC
Q 027301 124 QAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (225)
Q Consensus 124 r~~EL~hGR~AMLg~~G~lv~e~l~~~G~ 152 (225)
..+|..|||+||+|++..+..|+++++++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 35799999999999999999999999886
No 30
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.27 E-value=8.3e-05 Score=66.77 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=28.0
Q ss_pred HHHHHhhhhhhhHhhhhhhhhhhhhccCCCC
Q 027301 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (225)
Q Consensus 123 ~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (225)
+..+|+.|||+||+|++-.++.|.+++.|+.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 3568999999999999999999999988864
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=96.26 E-value=0.0023 Score=55.64 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhhhhhhHhhhhhhhhhhhhc-cCCCC
Q 027301 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFN-KFGAN 153 (225)
Q Consensus 119 ~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~-~~G~~ 153 (225)
+.+..+..|+-|||+||+|++-.++.|++| ++|+.
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 344456679999999999999999999999 88875
Done!