Query 027301
Match_columns 225
No_of_seqs 236 out of 968
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:51:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 2.3E-36 7.8E-41 265.0 10.6 130 72-205 13-145 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 2.1E-35 7.3E-40 260.6 3.7 117 75-205 6-165 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 1.1E-33 3.7E-38 252.9 3.4 115 72-205 56-170 (269)
4 2wsc_4 Chlorophyll A-B binding 100.0 7.1E-32 2.4E-36 239.1 1.2 114 73-205 45-159 (251)
5 2wsc_3 LHCA3, type II chloroph 100.0 3.7E-31 1.3E-35 237.3 2.7 118 76-205 52-176 (276)
6 2wsc_1 AT3G54890, LHCA1; photo 99.9 6.5E-28 2.2E-32 212.7 7.6 114 79-205 44-159 (241)
7 3pl9_A Chlorophyll A-B binding 99.5 1.7E-14 6E-19 127.4 3.6 52 101-153 172-223 (243)
8 2wsc_3 LHCA3, type II chloroph 99.4 1.4E-14 4.8E-19 130.0 1.9 56 99-154 200-255 (276)
9 2bhw_A Chlorophyll A-B binding 99.4 5.4E-14 1.8E-18 123.2 4.9 54 99-153 153-206 (232)
10 2wsc_2 LHCA2, type II chloroph 99.4 2.6E-14 9E-19 127.8 1.2 56 99-154 192-248 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 3.5E-13 1.2E-17 118.8 1.4 55 99-154 164-219 (241)
12 2wsc_4 Chlorophyll A-B binding 99.1 7.9E-12 2.7E-16 110.7 1.4 48 101-154 183-230 (251)
13 2wsc_H Photosystem I reaction 33.1 9.1 0.00031 31.1 0.0 26 1-26 1-30 (144)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=2.3e-36 Score=264.97 Aligned_cols=130 Identities=44% Similarity=0.866 Sum_probs=112.1
Q ss_pred hhhhhcCCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCC
Q 027301 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (225)
Q Consensus 72 ~~~wyg~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G 151 (225)
.++|||+||++||| +++ .++|+||||++||||||||+||++|+|+++|||++||+||||||||++|++++|+++..|
T Consensus 13 ~~~~~~~~r~~~l~--~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 13 GSPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp TCTTSSTTCCCTTG--GGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccCCCcccccC--ccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 35899999999994 444 589999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCCcccccccccccCCCccccCCCCchh---hHHHHHHHHHHHHHhhhhhhccC
Q 027301 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITN 205 (225)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~g~~l~Ylg~p~p~---~~~~li~~evvLmG~~E~~R~~g 205 (225)
+.. +++.||++|...+.+..++|+++|... .+..++++|+++||++|.+|+.+
T Consensus 90 ~~~-~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~ 145 (232)
T 2bhw_A 90 VKF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 145 (232)
T ss_dssp CCC-SCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCC-cccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 643 367899999877776678899877532 23455678999999999999876
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=2.1e-35 Score=260.64 Aligned_cols=117 Identities=33% Similarity=0.738 Sum_probs=68.8
Q ss_pred hhcCCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChh------------------------------------
Q 027301 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118 (225)
Q Consensus 75 wyg~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe------------------------------------ 118 (225)
+++++|++|||+ .++|+||||++||||||||+||+++||
T Consensus 6 ~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T 3pl9_A 6 GFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSL 80 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccc
Confidence 445799999996 899999999999999999999999987
Q ss_pred -------hHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCCCCCcccccccccccCCCccccCCCCchhhHHHHHHHH
Q 027301 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191 (225)
Q Consensus 119 -------~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~~p~~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~e 191 (225)
+++|||++||+||||||||++|++++|++++ .+||++|+..+.+ .++|++++.++++..++++|
T Consensus 81 ~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~~-g~~y~g~p~~~~i~~l~~~q 151 (243)
T 3pl9_A 81 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELIE-GSSYLGQPLPFSMTTLIWIE 151 (243)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHHS-CEEETTEEECCCHHHHHHHH
T ss_pred ccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------ccccccccccccc-ccccccCccchhhHHHHHHH
Confidence 3789999999999999999999999999862 4799999876654 37899988888888888999
Q ss_pred HHHHHhhhhhhccC
Q 027301 192 IVLVGGAEYYRITN 205 (225)
Q Consensus 192 vvLmG~~E~~R~~g 205 (225)
+++||++|.+|+++
T Consensus 152 v~lmG~~E~~R~~~ 165 (243)
T 3pl9_A 152 VLVIGYIEFQRNAE 165 (243)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999999986
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.97 E-value=1.1e-33 Score=252.93 Aligned_cols=115 Identities=39% Similarity=0.780 Sum_probs=65.6
Q ss_pred hhhhhcCCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCC
Q 027301 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (225)
Q Consensus 72 ~~~wyg~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G 151 (225)
...+||++|++|||+ .++|+||+|++||||||||+||++|+|+++|||++||+||||||||++|++++|++++.|
T Consensus 56 ~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G 130 (269)
T 2wsc_2 56 VCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLG 130 (269)
T ss_dssp -------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTT
T ss_pred eecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCC
Confidence 456899999999995 789999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHHhhhhhhccC
Q 027301 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (225)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~g 205 (225)
+++ .+.||++|.. +|+..+. .++++|+++||++|.+|+++
T Consensus 131 ~~~--~p~w~~aG~~-------~~~~~~~-----~l~~~qi~liG~~E~~r~~~ 170 (269)
T 2wsc_2 131 ILN--TPSWYTAGEQ-------EYFTDTT-----TLFIVELVFIGWAEGRRWAD 170 (269)
T ss_dssp SSS--CCCCCSTTSS-------SSCCCTT-----SHHHHHTTHHHHHHHHHHTT
T ss_pred ccc--Cccccccchh-------hhhcchH-----HHHHHHHHHHHHHHHHHHhc
Confidence 875 3569997653 5676542 24567899999999999875
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.96 E-value=7.1e-32 Score=239.06 Aligned_cols=114 Identities=34% Similarity=0.710 Sum_probs=67.3
Q ss_pred hhhhcC-CCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCC
Q 027301 73 AKWYGP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (225)
Q Consensus 73 ~~wyg~-~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G 151 (225)
..+||+ ||++|+|+ .++|.||||++||||||||+||++|+|+++++|++||+||||||||++|++++|++++.|
T Consensus 45 ~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g 119 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 119 (251)
T ss_dssp -----------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSC
T ss_pred ccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCC
Confidence 468999 89999995 789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHHhhhhhhccC
Q 027301 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (225)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~g 205 (225)
+++ .+.||++|.. +|++++.. ++++|+++||++|.+|+++
T Consensus 120 ~~~--~p~w~~aG~~-------~~~~~~~~-----l~~~qi~liG~~E~~r~~~ 159 (251)
T 2wsc_4 120 IIN--VPKWYAAGKE-------EYFASSST-----LFVIEFILSHYVEIRRWQD 159 (251)
T ss_dssp SSC--CCCCSCCCSS-------SCSSCSSC-----TTTTHHHHHHTTTHHHHHH
T ss_pred ccC--CccccccchH-------hhhccchH-----HHHHHHHHHHHHHHHHhhc
Confidence 875 3579997653 57776532 2456888999999999864
No 5
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.96 E-value=3.7e-31 Score=237.26 Aligned_cols=118 Identities=36% Similarity=0.653 Sum_probs=67.5
Q ss_pred hcCCCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhH------HHHHHHHhhhhhhhHhhhhhhhhhhhhcc
Q 027301 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------SKYQAYELIHARWAMLGAAGFIIPEAFNK 149 (225)
Q Consensus 76 yg~~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~------~~~r~~EL~hGR~AMLg~~G~lv~e~l~~ 149 (225)
||++|++|||+ .++|+||||++||||||||+|| .|++++ +++|++||+||||||||++|++++|++++
T Consensus 52 ~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~ 125 (276)
T 2wsc_3 52 QGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125 (276)
T ss_dssp ---------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSS
T ss_pred cCCCccccCCC-----CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcc
Confidence 89999999995 7899999999999999999999 788999 99999999999999999999999999999
Q ss_pred CCCCCCC-CcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHHhhhhhhccC
Q 027301 150 FGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (225)
Q Consensus 150 ~G~~~~p-~~~Wf~AG~~~~~g~~l~Ylg~p~p~~~~~li~~evvLmG~~E~~R~~g 205 (225)
.|+.... ...||+++++. ..+..+||+++. .++++|+++||++|.+|+++
T Consensus 126 ~g~~~~~~p~~w~~~g~ip-~aG~~~~~~~~~-----~l~~~qi~liG~~E~~r~~~ 176 (276)
T 2wsc_3 126 AGLIPQETALPWFRTGFIP-PAGTYNYWADSY-----TLFVFEMALMGFAEHRRFQD 176 (276)
T ss_dssp CCCCCCSSCCSSSSCCCC------CCCSCCCC-----STTHHHHHHTHHHHTTTTTG
T ss_pred cccccccCcchhhhhhccc-chhHHHHhccch-----HHHHHHHHHHHHHHHhhhcc
Confidence 9876322 23599988753 334578998764 24567899999999999875
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.94 E-value=6.5e-28 Score=212.72 Aligned_cols=114 Identities=34% Similarity=0.712 Sum_probs=78.7
Q ss_pred CCcCccCcCccCCCCCCCCCCCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCCCCCc
Q 027301 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158 (225)
Q Consensus 79 ~R~~~lp~G~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~~p~~ 158 (225)
-|.+|+|+ ...|+||+|++||||||||+||++|+|+++|||++||+||||||||++|+++||+++. .
T Consensus 44 m~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~ 110 (241)
T 2wsc_1 44 MAAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------G 110 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C
T ss_pred cccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------C
Confidence 45679995 7899999999999999999999999999999999999999999999999999999753 2
Q ss_pred cccccccc-ccCCCccccCCCCchh-hHHHHHHHHHHHHHhhhhhhccC
Q 027301 159 VWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITN 205 (225)
Q Consensus 159 ~Wf~AG~~-~~~g~~l~Ylg~p~p~-~~~~li~~evvLmG~~E~~R~~g 205 (225)
.|++++.. .+.++..+|++++.++ .+.+++++|+++||++|.+|+.+
T Consensus 111 ~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~ 159 (241)
T 2wsc_1 111 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME 159 (241)
T ss_dssp -----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSC
T ss_pred ccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47776542 3455667888887665 35566788999999999999865
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.46 E-value=1.7e-14 Score=127.36 Aligned_cols=52 Identities=37% Similarity=0.589 Sum_probs=49.9
Q ss_pred CCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCC
Q 027301 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (225)
Q Consensus 101 ~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (225)
.+|||+ |||+||++|+++++++|++||+|||+||+|++|+++||++++.|++
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 589999 9999999999999999999999999999999999999999999875
No 8
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.45 E-value=1.4e-14 Score=129.96 Aligned_cols=56 Identities=21% Similarity=0.414 Sum_probs=47.0
Q ss_pred CCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCC
Q 027301 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (225)
Q Consensus 99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~ 154 (225)
|..+|||++|||+||.+++++++++|++||+||||||||++|+++||++++.|++.
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~ 255 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQ 255 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHH
Confidence 34689999999999999888899999999999999999999999999999998763
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.44 E-value=5.4e-14 Score=123.19 Aligned_cols=54 Identities=30% Similarity=0.568 Sum_probs=50.8
Q ss_pred CCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCC
Q 027301 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (225)
Q Consensus 99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (225)
|+.+|||+ |||+||.+|+++++++|.+||+|||+||+|++|+++||++++.|++
T Consensus 153 d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~ 206 (232)
T 2bhw_A 153 DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 206 (232)
T ss_dssp SSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSH
T ss_pred cccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChH
Confidence 45689998 9999999999999999999999999999999999999999998875
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.41 E-value=2.6e-14 Score=127.79 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=51.2
Q ss_pred CCCCCCCCccCCCCCCC-ChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCC
Q 027301 99 TGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (225)
Q Consensus 99 ~G~~PGD~GfDPlGL~~-dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~ 154 (225)
|..+|||++|||+||.+ |+|+++++|.+||+||||||+|++|+++||++++.|++.
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~ 248 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 248 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSC
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHH
Confidence 34689999999999984 788899999999999999999999999999999999863
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.30 E-value=3.5e-13 Score=118.85 Aligned_cols=55 Identities=29% Similarity=0.583 Sum_probs=49.8
Q ss_pred CCCCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhh-hhccCCCCC
Q 027301 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNKFGANC 154 (225)
Q Consensus 99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e-~l~~~G~~~ 154 (225)
++.+||| +|||+||.+|+++++++|.+||+|||+||+|++|+++|| ++++.|++.
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~ 219 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHH
Confidence 4568998 599999999999999999999999999999999999999 578888753
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.13 E-value=7.9e-12 Score=110.73 Aligned_cols=48 Identities=25% Similarity=0.421 Sum_probs=43.5
Q ss_pred CCCCCCccCCCCCCCChhhHHHHHHHHhhhhhhhHhhhhhhhhhhhhccCCCCC
Q 027301 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (225)
Q Consensus 101 ~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGR~AMLg~~G~lv~e~l~~~G~~~ 154 (225)
.+|||+ |||+|+.+ ++++|.+||+|||| |+|++|+++||++++.|++.
T Consensus 183 ~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~ 230 (251)
T 2wsc_4 183 GYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFD 230 (251)
T ss_dssp HSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCC
T ss_pred cCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHH
Confidence 479998 99999975 67789999999999 99999999999999999863
No 13
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=33.05 E-value=9.1 Score=31.08 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=0.0
Q ss_pred Ccccccc--cCccc--cccchhhcCCcccc
Q 027301 1 MASLAAS--STPAA--SIGAKEMLGNPLNV 26 (225)
Q Consensus 1 ~~~~~~~--~~~~~--~~~~~~~~g~~~~~ 26 (225)
||||+.. .+.+. -|+.|++-|+.+..
T Consensus 1 maslat~~a~~p~~~kgl~gSs~~G~Kl~v 30 (144)
T 2wsc_H 1 MASLATLAAVQPTTLKGLAGSSIAGTKLHI 30 (144)
T ss_dssp ------------------------------
T ss_pred CcchhhhhhcCccccccccccccccceEee
Confidence 7776652 23333 37788888888864
Done!