BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027302
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IQX|A Chain A, Mutant P44s P169s M296i Of Foot-and-mouth Disease Virus
Rna-dependent Rna Polymerase
Length = 481
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 83 RISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHK 128
R +LI E TVG EVEA K E F Q F L D+IR+ K
Sbjct: 128 RGALIDFENGTVGPEVEAALKLMEKREYKFACQTF-LKDEIRSMEK 172
>pdb|3NMA|A Chain A, Mutant P169s Of Foot-And-Mouth Disease Virus Rna Dependent
Rna- Polymerase
Length = 476
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 83 RISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHK 128
R +LI E TVG EVEA K E F Q F L D+IR+ K
Sbjct: 128 RGALIDFENGTVGPEVEAALKLMEKREYKFACQTF-LKDEIRSMEK 172
>pdb|2D7S|A Chain A, Foot And Mouth Disease Virus Rna-Dependent Rna Polymerase
In Complex With Vpg Protein
pdb|2F8E|X Chain X, Foot And Mouth Disease Virus Rna-dependent Rna Polymerase
In Complex With Uridylylated Vpg Protein
Length = 474
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 83 RISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHK 128
R +LI E TVG EVEA K E F Q F L D+IR K
Sbjct: 128 RGALIDFENGTVGPEVEAALKLMEKREYKFACQTF-LKDEIRPMEK 172
>pdb|1U09|A Chain A, Footand Mouth Disease Virus Rna-Dependent Rna Polymerase
pdb|1WNE|A Chain A, Foot And Mouth Disease Virus Rna-Dependent Rna Polymerase
In Complex With A Template-Primer Rna
pdb|2E9R|X Chain X, Foot-And-Mouth Disease Virus Rna-Dependent Rna Polymerase
In Complex With A Template-Primer Rna And With Ribavirin
pdb|2E9T|A Chain A, Foot-And-Mouth Disease Virus Rna-Polymerase Rna Dependent
In Complex With A Template-Primer Rna And 5f-Utp
pdb|2E9T|D Chain D, Foot-And-Mouth Disease Virus Rna-Polymerase Rna Dependent
In Complex With A Template-Primer Rna And 5f-Utp
pdb|2E9Z|A Chain A, Foot-And-Mouth Disease Virus Rna-Polymerase In Complex
With A Template- Primer Rna, Atp And Utp
pdb|2EC0|A Chain A, Rna-Dependent Rna Polymerase Of Foot-And-Mouth Disease
Virus In Complex With A Template-Primer Rna And Atp
pdb|2EC0|D Chain D, Rna-Dependent Rna Polymerase Of Foot-And-Mouth Disease
Virus In Complex With A Template-Primer Rna And Atp
Length = 476
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 83 RISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHK 128
R +LI E TVG EVEA K E F Q F L D+IR K
Sbjct: 128 RGALIDFENGTVGPEVEAALKLMEKREYKFACQTF-LKDEIRPMEK 172
>pdb|3KNA|A Chain A, M296i Mutant Of Foot-And-Mouth Disease Virus
Rna-Polymerase In Complex With A Template- Primer Rna
pdb|3KOA|A Chain A, M296i Mutant Of Foot-And-Mouth Disease Virus
Rna-Polymerase In Complex With A Template- Primer Rna
And Gtp
Length = 476
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 83 RISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHK 128
R +LI E TVG EVEA K E F Q F L D+IR K
Sbjct: 128 RGALIDFENGTVGPEVEAALKLMEKREYKFACQTF-LKDEIRPMEK 172
>pdb|3KMQ|A Chain A, G62s Mutant Of Foot-And-Mouth Disease Virus Rna-Polymerase
In Complex With A Template- Primer Rna, Tetragonal
Structure
pdb|3KMS|A Chain A, G62s Mutant Of Foot-And-Mouth Disease Virus Rna-Polymerase
In Complex With A Template- Primer Rna Trigonal
Structure
Length = 476
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 83 RISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHK 128
R +LI E TVG EVEA K E F Q F L D+IR K
Sbjct: 128 RGALIDFENGTVGPEVEAALKLMEKREYKFACQTF-LKDEIRPMEK 172
>pdb|3NL0|A Chain A, Mutant P44s M296i Of Foot-And-Mouth Disease Virus
Rna-Dependent Rna Polymerase
Length = 475
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 83 RISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHK 128
R +LI E TVG EVEA K E F Q F L D+IR K
Sbjct: 128 RGALIDFENGTVGPEVEAALKLMEKREYKFACQTF-LKDEIRPMEK 172
>pdb|3KLV|A Chain A, M296i G62s Mutant Of Foot-And-Mouth Disease Virus
Rna-Polymerase In Complex With A Template- Primer Rna
Length = 476
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 83 RISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHK 128
R +LI E TVG EVEA K E F Q F L D+IR K
Sbjct: 128 RGALIDFENGTVGPEVEAALKLMEKREYKFACQTF-LKDEIRPMEK 172
>pdb|3NKY|A Chain A, Structure Of A Mutant P44s Of Foot-And-Mouth Disease Virus
Rna- Dependent Rna Polymerase
Length = 476
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 83 RISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHK 128
R +LI E TVG EVEA K E F Q F L D+IR K
Sbjct: 128 RGALIDFENGTVGPEVEAALKLMEKREYKFACQTF-LKDEIRPMEK 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,644,779
Number of Sequences: 62578
Number of extensions: 127577
Number of successful extensions: 303
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 13
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)