Query 027302
Match_columns 225
No_of_seqs 17 out of 19
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 07:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 94.6 4.4 9.6E-05 40.1 18.2 52 161-212 952-1010(1164)
2 COG1579 Zn-ribbon protein, pos 94.5 1.9 4.1E-05 38.8 14.2 97 30-130 21-126 (239)
3 PRK02224 chromosome segregatio 93.8 5.8 0.00013 39.2 17.2 84 21-104 351-434 (880)
4 COG1196 Smc Chromosome segrega 93.6 5.1 0.00011 41.9 17.1 193 17-214 798-1003(1163)
5 PRK11637 AmiB activator; Provi 93.5 0.41 8.8E-06 44.1 8.3 83 30-112 44-126 (428)
6 PRK10884 SH3 domain-containing 92.0 0.7 1.5E-05 40.2 7.3 46 73-118 130-175 (206)
7 PF00261 Tropomyosin: Tropomyo 91.6 8 0.00017 33.3 13.3 103 24-126 76-188 (237)
8 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.5 4.2 9.1E-05 32.3 10.6 105 20-127 4-111 (132)
9 PRK11637 AmiB activator; Provi 90.9 13 0.00029 34.4 16.3 88 17-104 38-125 (428)
10 PRK04863 mukB cell division pr 90.2 23 0.00049 39.1 17.8 115 80-213 374-488 (1486)
11 TIGR01005 eps_transp_fam exopo 90.2 8.9 0.00019 37.7 13.6 31 25-55 193-223 (754)
12 PF05667 DUF812: Protein of un 90.2 20 0.00043 36.0 16.1 160 46-214 372-538 (594)
13 PHA02562 46 endonuclease subun 89.8 17 0.00036 33.8 17.1 105 28-133 236-356 (562)
14 TIGR01843 type_I_hlyD type I s 89.8 7.2 0.00016 34.2 11.5 26 77-102 205-230 (423)
15 PHA02562 46 endonuclease subun 89.6 17 0.00038 33.7 20.8 97 27-133 175-281 (562)
16 PRK02224 chromosome segregatio 89.3 25 0.00053 35.0 16.2 174 27-215 259-446 (880)
17 TIGR02168 SMC_prok_B chromosom 88.5 27 0.00058 34.5 18.1 22 31-52 675-696 (1179)
18 PF12718 Tropomyosin_1: Tropom 88.3 5.3 0.00011 32.8 9.1 88 35-130 2-89 (143)
19 TIGR00606 rad50 rad50. This fa 88.0 23 0.0005 37.6 15.6 30 189-218 1048-1081(1311)
20 PF05266 DUF724: Protein of un 87.5 10 0.00022 32.7 10.7 104 4-112 65-182 (190)
21 TIGR00606 rad50 rad50. This fa 87.4 32 0.0007 36.6 16.2 107 25-131 821-951 (1311)
22 KOG0018 Structural maintenance 86.9 30 0.00064 37.7 15.6 176 9-217 663-843 (1141)
23 PF05529 Bap31: B-cell recepto 85.8 5.4 0.00012 33.0 7.9 69 25-106 117-185 (192)
24 PF10473 CENP-F_leu_zip: Leuci 85.7 20 0.00043 30.0 12.1 83 29-129 20-102 (140)
25 PF04012 PspA_IM30: PspA/IM30 85.4 21 0.00045 29.9 12.0 99 4-105 22-121 (221)
26 PF02050 FliJ: Flagellar FliJ 83.4 14 0.0003 26.3 10.6 87 32-120 4-90 (123)
27 PF10186 Atg14: UV radiation r 82.2 28 0.00061 29.3 10.8 88 16-110 60-147 (302)
28 KOG0161 Myosin class II heavy 81.9 14 0.00031 41.9 11.3 145 21-201 1620-1764(1930)
29 KOG0161 Myosin class II heavy 81.2 57 0.0012 37.4 15.5 155 8-173 988-1145(1930)
30 PF00038 Filament: Intermediat 79.9 40 0.00086 29.3 11.5 52 75-126 223-274 (312)
31 TIGR00634 recN DNA repair prot 79.8 29 0.00063 33.4 11.4 106 12-121 287-393 (563)
32 COG1196 Smc Chromosome segrega 79.5 16 0.00034 38.4 10.1 95 14-108 385-479 (1163)
33 KOG0933 Structural maintenance 78.8 32 0.00069 37.5 12.1 124 15-142 776-906 (1174)
34 PF00261 Tropomyosin: Tropomyo 78.7 16 0.00036 31.5 8.5 52 59-110 174-225 (237)
35 KOG0996 Structural maintenance 78.5 50 0.0011 36.5 13.5 43 81-126 884-926 (1293)
36 COG1579 Zn-ribbon protein, pos 77.4 47 0.001 30.1 11.3 93 15-121 55-156 (239)
37 PF12718 Tropomyosin_1: Tropom 76.6 41 0.00088 27.6 11.8 104 9-123 18-124 (143)
38 PF11559 ADIP: Afadin- and alp 75.2 22 0.00048 28.3 7.8 98 6-103 32-129 (151)
39 PF14662 CCDC155: Coiled-coil 74.5 26 0.00055 31.2 8.7 93 28-131 45-140 (193)
40 PRK09039 hypothetical protein; 74.4 47 0.001 30.7 10.7 86 24-116 114-203 (343)
41 TIGR03007 pepcterm_ChnLen poly 74.3 75 0.0016 29.5 17.2 28 26-53 161-188 (498)
42 PF11172 DUF2959: Protein of u 74.1 27 0.00057 31.3 8.7 81 24-116 117-200 (201)
43 KOG1003 Actin filament-coating 73.8 69 0.0015 28.9 11.9 101 24-124 44-154 (205)
44 TIGR00634 recN DNA repair prot 73.4 46 0.00099 32.2 10.8 67 41-107 267-333 (563)
45 TIGR01843 type_I_hlyD type I s 72.0 55 0.0012 28.8 10.1 26 76-101 211-236 (423)
46 PRK09039 hypothetical protein; 71.4 86 0.0019 29.0 12.7 77 26-109 74-150 (343)
47 PF14197 Cep57_CLD_2: Centroso 70.3 24 0.00051 26.2 6.4 49 79-131 2-57 (69)
48 PF06013 WXG100: Proteins of 1 70.2 26 0.00056 23.5 6.2 54 76-129 12-66 (86)
49 smart00338 BRLZ basic region l 69.5 19 0.0004 25.2 5.5 46 50-109 15-60 (65)
50 KOG0977 Nuclear envelope prote 67.1 26 0.00057 35.2 7.9 90 10-106 97-193 (546)
51 COG1842 PspA Phage shock prote 67.0 93 0.002 27.6 12.6 100 5-107 24-124 (225)
52 TIGR01000 bacteriocin_acc bact 66.7 72 0.0016 29.8 10.3 75 27-101 166-262 (457)
53 PRK03918 chromosome segregatio 66.4 1.4E+02 0.0031 29.6 16.8 39 25-63 192-230 (880)
54 PF12128 DUF3584: Protein of u 65.7 1.9E+02 0.0042 30.9 16.9 99 16-114 597-710 (1201)
55 PF09731 Mitofilin: Mitochondr 65.6 1.3E+02 0.0028 28.9 12.7 50 83-132 342-396 (582)
56 cd00632 Prefoldin_beta Prefold 64.5 61 0.0013 24.7 8.5 88 29-127 9-104 (105)
57 PF08172 CASP_C: CASP C termin 63.8 39 0.00085 30.3 7.7 33 35-67 1-33 (248)
58 KOG0977 Nuclear envelope prote 63.7 84 0.0018 31.8 10.6 97 17-113 90-186 (546)
59 PF04156 IncA: IncA protein; 63.3 81 0.0017 25.7 9.4 80 25-104 87-166 (191)
60 COG4942 Membrane-bound metallo 63.3 1.6E+02 0.0034 29.0 14.5 58 33-104 38-95 (420)
61 PRK04778 septation ring format 62.1 1.6E+02 0.0035 28.7 17.2 38 175-212 470-508 (569)
62 PF06698 DUF1192: Protein of u 60.6 23 0.00049 26.1 4.7 34 27-60 22-55 (59)
63 PF04728 LPP: Lipoprotein leuc 60.2 14 0.00031 27.1 3.6 30 76-105 11-40 (56)
64 PF07926 TPR_MLP1_2: TPR/MLP1/ 59.9 69 0.0015 25.4 7.8 25 80-104 96-120 (132)
65 PF06698 DUF1192: Protein of u 59.1 11 0.00023 27.8 2.8 32 71-102 17-48 (59)
66 TIGR02680 conserved hypothetic 58.7 2.8E+02 0.006 30.4 14.9 78 24-101 740-819 (1353)
67 PF11932 DUF3450: Protein of u 57.9 1.3E+02 0.0027 26.1 11.5 50 5-54 21-70 (251)
68 KOG0250 DNA repair protein RAD 57.9 2.9E+02 0.0064 30.4 15.4 35 181-215 429-463 (1074)
69 KOG4593 Mitotic checkpoint pro 57.6 92 0.002 32.6 9.9 96 28-132 505-625 (716)
70 TIGR02231 conserved hypothetic 56.6 1.8E+02 0.004 27.7 12.6 102 73-206 69-170 (525)
71 KOG0982 Centrosomal protein Nu 56.3 82 0.0018 31.7 9.0 50 79-128 301-367 (502)
72 PRK03947 prefoldin subunit alp 56.0 99 0.0021 24.3 11.6 77 28-104 15-123 (140)
73 PF09755 DUF2046: Uncharacteri 55.6 1.9E+02 0.0041 27.5 18.1 101 78-180 138-249 (310)
74 TIGR01005 eps_transp_fam exopo 53.0 2.4E+02 0.0052 28.0 11.7 60 33-92 237-305 (754)
75 KOG4674 Uncharacterized conser 52.7 4.2E+02 0.0091 30.8 14.5 155 39-207 918-1072(1822)
76 PF07889 DUF1664: Protein of u 52.2 1.3E+02 0.0029 24.8 9.4 77 28-125 45-121 (126)
77 PF15070 GOLGA2L5: Putative go 52.1 2.7E+02 0.0059 28.3 15.8 75 8-101 32-106 (617)
78 cd07618 BAR_Rich1 The Bin/Amph 51.8 32 0.00069 31.0 5.1 70 26-119 121-190 (246)
79 PF13863 DUF4200: Domain of un 51.7 1.1E+02 0.0023 23.4 8.7 26 79-104 85-110 (126)
80 PF07106 TBPIP: Tat binding pr 51.5 1.3E+02 0.0029 24.4 8.3 30 76-105 110-139 (169)
81 PF14257 DUF4349: Domain of un 51.5 54 0.0012 28.3 6.3 27 77-103 164-190 (262)
82 PF09787 Golgin_A5: Golgin sub 51.4 2.4E+02 0.0051 27.4 11.2 102 29-130 217-329 (511)
83 PF05911 DUF869: Plant protein 50.7 1.2E+02 0.0026 31.7 9.6 80 23-109 614-693 (769)
84 COG2433 Uncharacterized conser 50.4 76 0.0016 32.9 8.0 97 31-130 427-532 (652)
85 KOG4571 Activating transcripti 50.1 74 0.0016 30.0 7.3 47 44-104 238-284 (294)
86 KOG1962 B-cell receptor-associ 49.9 58 0.0013 29.3 6.4 75 25-104 113-187 (216)
87 PF05701 WEMBL: Weak chloropla 49.5 1.5E+02 0.0033 28.8 9.6 53 80-136 307-359 (522)
88 PF01576 Myosin_tail_1: Myosin 49.2 5.6 0.00012 40.8 0.0 74 27-100 603-683 (859)
89 TIGR02231 conserved hypothetic 49.2 1.2E+02 0.0027 28.8 8.8 36 25-60 70-105 (525)
90 PF06120 Phage_HK97_TLTM: Tail 49.0 2.3E+02 0.005 26.5 11.1 38 90-131 75-112 (301)
91 TIGR02680 conserved hypothetic 48.5 92 0.002 33.8 8.7 81 22-105 871-951 (1353)
92 PF11559 ADIP: Afadin- and alp 48.5 1.4E+02 0.003 23.8 11.0 94 7-103 54-147 (151)
93 TIGR00293 prefoldin, archaeal 47.7 1.3E+02 0.0027 23.2 8.5 74 30-104 10-108 (126)
94 PF15233 SYCE1: Synaptonemal c 47.5 45 0.00098 28.4 5.1 40 25-64 5-44 (134)
95 smart00806 AIP3 Actin interact 47.1 3E+02 0.0065 27.3 11.2 108 21-133 80-198 (426)
96 PF08614 ATG16: Autophagy prot 46.7 1E+02 0.0022 25.8 7.1 87 35-121 69-162 (194)
97 COG3883 Uncharacterized protei 46.3 76 0.0016 29.3 6.7 39 64-102 20-58 (265)
98 PF01920 Prefoldin_2: Prefoldi 46.2 1.1E+02 0.0024 22.1 9.2 78 27-104 6-84 (106)
99 cd00890 Prefoldin Prefoldin is 46.0 1.3E+02 0.0027 22.7 10.8 39 65-104 78-116 (129)
100 KOG0995 Centromere-associated 46.0 3.6E+02 0.0078 27.9 19.3 108 22-129 255-393 (581)
101 PF03962 Mnd1: Mnd1 family; I 45.5 1.9E+02 0.0042 24.7 9.8 35 25-59 68-102 (188)
102 PF08826 DMPK_coil: DMPK coile 45.3 43 0.00093 24.6 4.1 25 77-101 34-58 (61)
103 PF12761 End3: Actin cytoskele 45.2 47 0.001 29.5 5.0 88 16-104 87-182 (195)
104 KOG0976 Rho/Rac1-interacting s 45.2 4.7E+02 0.01 28.9 15.1 170 31-204 104-307 (1265)
105 COG0576 GrpE Molecular chapero 44.6 1.1E+02 0.0023 26.4 7.1 65 26-90 43-109 (193)
106 KOG2077 JNK/SAPK-associated pr 44.1 1.3E+02 0.0028 31.6 8.5 54 30-104 326-379 (832)
107 TIGR03185 DNA_S_dndD DNA sulfu 43.9 3.3E+02 0.0072 26.9 11.6 74 25-98 208-285 (650)
108 PF11471 Sugarporin_N: Maltopo 43.5 34 0.00073 24.9 3.3 30 24-53 30-59 (60)
109 PF07544 Med9: RNA polymerase 43.4 49 0.0011 24.8 4.3 53 25-95 27-79 (83)
110 PF14915 CCDC144C: CCDC144C pr 42.2 3.1E+02 0.0068 26.1 10.5 168 27-208 57-248 (305)
111 PF05557 MAD: Mitotic checkpoi 41.6 8.7 0.00019 38.1 0.0 33 185-217 278-310 (722)
112 PRK10361 DNA recombination pro 41.6 3.4E+02 0.0074 27.0 10.7 52 74-125 132-186 (475)
113 PF07716 bZIP_2: Basic region 41.5 80 0.0017 21.6 4.8 39 50-102 14-52 (54)
114 PRK14158 heat shock protein Gr 41.0 1.2E+02 0.0027 26.5 6.9 62 25-86 46-109 (194)
115 PRK10884 SH3 domain-containing 40.7 2.5E+02 0.0055 24.6 8.9 20 32-51 92-111 (206)
116 PF13851 GAS: Growth-arrest sp 40.4 2.4E+02 0.0052 24.3 12.4 90 11-104 26-115 (201)
117 KOG1924 RhoA GTPase effector D 40.4 2.4E+02 0.0052 30.8 9.9 123 83-211 373-511 (1102)
118 PRK11546 zraP zinc resistance 40.1 1.4E+02 0.003 25.3 6.9 64 5-103 47-110 (143)
119 PF00038 Filament: Intermediat 39.9 2.5E+02 0.0055 24.4 18.7 19 168-186 177-196 (312)
120 PF06931 Adeno_E4_ORF3: Mastad 39.8 52 0.0011 27.4 4.2 66 1-91 16-81 (113)
121 KOG0994 Extracellular matrix g 39.5 3.6E+02 0.0077 30.9 11.2 50 74-123 1583-1635(1758)
122 cd07651 F-BAR_PombeCdc15_like 39.4 2.4E+02 0.0052 24.0 11.9 102 12-116 89-191 (236)
123 PRK04863 mukB cell division pr 39.3 6.1E+02 0.013 28.6 15.0 51 72-133 432-482 (1486)
124 PRK04778 septation ring format 37.9 4E+02 0.0087 26.1 17.3 148 45-214 77-224 (569)
125 PF12828 PXB: PX-associated; 37.3 37 0.00081 28.1 3.1 30 174-203 7-36 (137)
126 PRK13729 conjugal transfer pil 37.1 66 0.0014 32.0 5.2 18 25-42 75-92 (475)
127 COG1704 LemA Uncharacterized c 37.1 68 0.0015 28.4 4.8 27 107-133 136-162 (185)
128 KOG0964 Structural maintenance 37.1 6.4E+02 0.014 28.2 15.0 97 25-132 264-374 (1200)
129 PF04645 DUF603: Protein of un 36.7 55 0.0012 29.1 4.1 30 75-104 112-146 (181)
130 PF03915 AIP3: Actin interacti 36.3 35 0.00075 33.1 3.1 110 23-135 82-196 (424)
131 PF12128 DUF3584: Protein of u 36.0 5.8E+02 0.013 27.4 12.9 92 14-108 283-378 (1201)
132 PF05600 DUF773: Protein of un 35.7 3.6E+02 0.0079 26.6 9.9 73 96-179 339-419 (507)
133 PF05701 WEMBL: Weak chloropla 35.3 4.3E+02 0.0094 25.8 18.2 40 12-51 211-253 (522)
134 smart00787 Spc7 Spc7 kinetocho 35.2 2.9E+02 0.0063 25.6 8.7 12 12-23 120-131 (312)
135 PF02050 FliJ: Flagellar FliJ 35.1 1.6E+02 0.0035 20.8 6.2 36 69-104 46-81 (123)
136 KOG0996 Structural maintenance 35.0 7.1E+02 0.015 28.2 15.8 103 14-123 923-1028(1293)
137 PF12777 MT: Microtubule-bindi 34.9 56 0.0012 29.7 4.1 79 26-104 214-292 (344)
138 PF10473 CENP-F_leu_zip: Leuci 34.3 2.8E+02 0.0061 23.3 10.4 78 10-101 8-85 (140)
139 PF09969 DUF2203: Uncharacteri 34.2 98 0.0021 25.0 4.9 28 74-101 49-76 (120)
140 PF05557 MAD: Mitotic checkpoi 33.3 14 0.00031 36.7 0.0 81 27-110 62-142 (722)
141 PF12795 MscS_porin: Mechanose 32.9 3.2E+02 0.0069 23.5 9.2 89 30-131 35-123 (240)
142 PF04156 IncA: IncA protein; 32.6 2.7E+02 0.0059 22.6 12.6 33 77-109 90-122 (191)
143 PRK14143 heat shock protein Gr 32.6 1.9E+02 0.0042 26.0 7.0 62 26-87 74-137 (238)
144 PF05010 TACC: Transforming ac 32.6 3.6E+02 0.0077 23.9 10.0 50 80-133 7-56 (207)
145 PF13334 DUF4094: Domain of un 32.3 39 0.00084 26.4 2.3 24 73-96 71-94 (95)
146 PRK11578 macrolide transporter 31.8 1.1E+02 0.0023 27.5 5.3 18 35-52 108-125 (370)
147 KOG1853 LIS1-interacting prote 31.5 4.1E+02 0.0088 25.5 9.1 25 34-58 109-133 (333)
148 PRK14147 heat shock protein Gr 30.6 2.6E+02 0.0057 23.8 7.1 62 25-86 24-87 (172)
149 KOG0963 Transcription factor/C 30.4 6.5E+02 0.014 26.3 14.0 29 24-52 247-275 (629)
150 COG3883 Uncharacterized protei 30.2 4.5E+02 0.0098 24.4 10.2 49 79-127 63-111 (265)
151 PF05615 THOC7: Tho complex su 30.1 2.4E+02 0.0052 22.3 6.5 82 23-104 13-103 (139)
152 PF10174 Cast: RIM-binding pro 29.9 6.9E+02 0.015 26.4 17.0 19 191-209 468-486 (775)
153 PF08663 HalX: HalX domain; I 29.7 59 0.0013 24.3 2.8 44 8-51 11-61 (71)
154 PRK13922 rod shape-determining 29.5 3.1E+02 0.0068 23.8 7.6 43 180-222 68-110 (276)
155 PF13166 AAA_13: AAA domain 29.4 4.9E+02 0.011 25.3 9.6 101 29-133 366-479 (712)
156 KOG4674 Uncharacterized conser 29.4 9.9E+02 0.021 28.1 15.6 59 4-62 23-102 (1822)
157 PF05278 PEARLI-4: Arabidopsis 29.3 2.9E+02 0.0063 25.8 7.7 90 27-127 167-262 (269)
158 KOG4196 bZIP transcription fac 29.0 95 0.0021 26.5 4.2 25 80-104 86-110 (135)
159 COG1422 Predicted membrane pro 28.9 3E+02 0.0065 24.8 7.4 61 13-95 59-121 (201)
160 PRK15178 Vi polysaccharide exp 28.8 4.6E+02 0.01 25.8 9.3 102 24-133 228-333 (434)
161 PF15500 Toxin_39: Putative RN 28.8 50 0.0011 26.7 2.4 25 182-206 39-63 (96)
162 PF08614 ATG16: Autophagy prot 28.7 2E+02 0.0043 24.1 6.0 82 25-106 94-175 (194)
163 smart00787 Spc7 Spc7 kinetocho 28.4 4.8E+02 0.011 24.2 10.2 20 82-101 225-244 (312)
164 PF10458 Val_tRNA-synt_C: Valy 28.3 1.6E+02 0.0034 20.9 4.7 32 16-47 1-32 (66)
165 PF00170 bZIP_1: bZIP transcri 28.1 1.4E+02 0.003 20.8 4.3 29 77-105 28-56 (64)
166 PRK11281 hypothetical protein; 27.8 2.1E+02 0.0045 31.2 7.3 88 8-103 62-149 (1113)
167 PRK01156 chromosome segregatio 27.7 6.6E+02 0.014 25.5 18.4 65 35-103 213-277 (895)
168 PF06705 SF-assemblin: SF-asse 27.5 4.1E+02 0.0088 23.0 11.9 104 24-133 32-140 (247)
169 cd01878 HflX HflX subfamily. 27.5 55 0.0012 26.0 2.5 26 80-105 4-29 (204)
170 PF05377 FlaC_arch: Flagella a 27.4 1.8E+02 0.004 21.3 4.9 26 79-104 11-36 (55)
171 TIGR02977 phageshock_pspA phag 27.2 4E+02 0.0086 22.8 13.2 16 5-20 24-39 (219)
172 PF06005 DUF904: Protein of un 26.8 2.7E+02 0.006 20.8 6.9 36 75-110 18-53 (72)
173 PRK14139 heat shock protein Gr 26.3 3.3E+02 0.0072 23.7 7.1 60 25-84 38-99 (185)
174 KOG0980 Actin-binding protein 26.2 9.1E+02 0.02 26.6 17.0 167 8-203 333-509 (980)
175 KOG2264 Exostosin EXT1L [Signa 26.2 1E+02 0.0023 32.4 4.6 42 49-104 81-122 (907)
176 COG5509 Uncharacterized small 26.1 1.3E+02 0.0027 23.0 4.0 35 27-61 26-60 (65)
177 KOG1003 Actin filament-coating 26.1 1E+02 0.0022 27.9 4.0 43 23-65 162-204 (205)
178 COG3352 FlaC Putative archaeal 25.9 2.3E+02 0.0051 24.7 6.1 65 28-105 81-145 (157)
179 PRK14155 heat shock protein Gr 25.8 3.1E+02 0.0068 24.2 7.0 64 24-87 18-83 (208)
180 KOG0933 Structural maintenance 25.7 3.6E+02 0.0078 30.0 8.5 75 32-124 786-860 (1174)
181 PF04849 HAP1_N: HAP1 N-termin 25.6 5.8E+02 0.013 24.2 12.0 116 79-215 171-296 (306)
182 PF00769 ERM: Ezrin/radixin/mo 25.6 4.8E+02 0.01 23.1 10.4 29 25-53 4-32 (246)
183 PRK10869 recombination and rep 25.5 4.8E+02 0.01 25.7 8.8 62 45-106 266-327 (553)
184 PHA03332 membrane glycoprotein 25.4 4.3E+02 0.0094 29.7 9.1 53 74-133 897-949 (1328)
185 COG5283 Phage-related tail pro 25.2 4.9E+02 0.011 29.2 9.5 87 35-121 87-180 (1213)
186 PF10506 MCC-bdg_PDZ: PDZ doma 25.1 1.3E+02 0.0028 22.6 3.9 38 30-67 2-39 (67)
187 PF04728 LPP: Lipoprotein leuc 25.0 2.5E+02 0.0054 20.7 5.2 30 27-56 11-40 (56)
188 PF04508 Pox_A_type_inc: Viral 24.9 91 0.002 19.4 2.5 17 28-44 3-19 (23)
189 PF04111 APG6: Autophagy prote 24.5 5.6E+02 0.012 23.6 10.1 41 25-65 42-82 (314)
190 COG0275 Predicted S-adenosylme 24.5 56 0.0012 31.0 2.2 37 45-86 216-254 (314)
191 cd07605 I-BAR_IMD Inverse (I)- 24.3 2.9E+02 0.0062 24.6 6.5 45 175-219 109-170 (223)
192 PRK10869 recombination and rep 24.3 6.9E+02 0.015 24.6 11.5 104 14-121 284-388 (553)
193 PF09486 HrpB7: Bacterial type 24.3 4.5E+02 0.0098 22.5 10.7 105 25-133 14-126 (158)
194 PF08180 BAGE: B melanoma anti 24.1 32 0.00069 22.5 0.4 12 75-86 10-21 (28)
195 PRK14145 heat shock protein Gr 23.9 3.8E+02 0.0083 23.6 7.1 55 27-81 53-109 (196)
196 PF04111 APG6: Autophagy prote 23.8 3.1E+02 0.0067 25.2 6.8 29 62-90 100-128 (314)
197 KOG0239 Kinesin (KAR3 subfamil 23.6 8.3E+02 0.018 25.2 11.6 56 8-64 164-220 (670)
198 PF00435 Spectrin: Spectrin re 23.5 2.4E+02 0.0052 19.0 10.0 59 73-131 32-97 (105)
199 KOG4727 U1-like Zn-finger prot 23.3 1.4E+02 0.0029 26.9 4.3 43 92-134 56-112 (193)
200 PRK00050 16S rRNA m(4)C1402 me 23.3 2.1E+02 0.0046 26.3 5.7 72 6-86 175-246 (296)
201 PF07106 TBPIP: Tat binding pr 23.2 4.1E+02 0.0089 21.6 7.3 58 74-131 71-133 (169)
202 COG5509 Uncharacterized small 23.1 1.2E+02 0.0026 23.1 3.4 28 72-99 22-49 (65)
203 smart00338 BRLZ basic region l 23.1 1.3E+02 0.0027 21.0 3.3 28 77-104 35-62 (65)
204 PF10805 DUF2730: Protein of u 23.0 2.6E+02 0.0056 21.8 5.4 23 77-99 67-89 (106)
205 PRK01156 chromosome segregatio 23.0 8E+02 0.017 24.9 11.1 26 77-102 690-715 (895)
206 PRK04406 hypothetical protein; 22.9 3.3E+02 0.0072 20.4 6.4 14 77-90 6-19 (75)
207 cd07593 BAR_MUG137_fungi The B 22.8 5.3E+02 0.012 22.7 8.0 72 27-104 115-186 (215)
208 PRK14149 heat shock protein Gr 22.7 4.8E+02 0.01 22.9 7.5 60 27-86 44-105 (191)
209 PRK14140 heat shock protein Gr 22.5 4.3E+02 0.0094 23.1 7.2 58 25-82 43-102 (191)
210 PRK14154 heat shock protein Gr 22.4 4.2E+02 0.0091 23.6 7.1 60 25-84 58-119 (208)
211 PF02388 FemAB: FemAB family; 22.3 3.6E+02 0.0078 25.2 7.1 71 61-133 225-299 (406)
212 PLN03229 acetyl-coenzyme A car 22.2 9.8E+02 0.021 25.6 14.1 52 13-65 467-526 (762)
213 KOG0964 Structural maintenance 22.2 1.1E+03 0.025 26.4 16.4 108 33-141 734-844 (1200)
214 PF14282 FlxA: FlxA-like prote 22.2 3.8E+02 0.0083 20.8 7.7 57 74-133 18-77 (106)
215 PTZ00464 SNF-7-like protein; P 21.6 5.6E+02 0.012 22.6 9.5 121 75-205 18-174 (211)
216 PF11855 DUF3375: Protein of u 21.5 1.5E+02 0.0033 28.5 4.6 45 75-119 144-190 (478)
217 PF12186 AcylCoA_dehyd_C: Acyl 21.2 1.6E+02 0.0034 24.3 4.0 39 9-49 4-42 (114)
218 PRK14141 heat shock protein Gr 21.0 4.3E+02 0.0093 23.5 6.9 63 25-87 37-101 (209)
219 TIGR01000 bacteriocin_acc bact 20.5 7.2E+02 0.016 23.3 14.8 28 79-106 169-196 (457)
220 PF13094 CENP-Q: CENP-Q, a CEN 20.4 3.7E+02 0.008 21.7 6.0 46 25-91 33-78 (160)
221 PF01576 Myosin_tail_1: Myosin 20.4 34 0.00073 35.3 0.0 104 19-133 285-389 (859)
222 PF07830 PP2C_C: Protein serin 20.3 3.3E+02 0.0071 21.1 5.3 57 156-212 9-80 (81)
223 PF04645 DUF603: Protein of un 20.1 6.4E+02 0.014 22.6 10.1 104 70-209 56-159 (181)
224 PF04582 Reo_sigmaC: Reovirus 20.0 35 0.00075 32.4 0.0 20 1-20 1-22 (326)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.63 E-value=4.4 Score=40.09 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHhhhhhh-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027302 161 ALKTLEDKIAEVVSQTARE-------EELYQEEEKIQKQVQLELIDLERKVSLMEMIAY 212 (225)
Q Consensus 161 d~e~i~~~l~dvvSq~~~E-------eeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~ 212 (225)
+.+.+...+......+.+- -++|..-...++.+..++.|+...+.-+..+..
T Consensus 952 ~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~ 1010 (1164)
T TIGR02169 952 SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIE 1010 (1164)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555544433 378888888888888888888876655444443
No 2
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.51 E-value=1.9 Score=38.82 Aligned_cols=97 Identities=26% Similarity=0.378 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhh---------hhhhhHHH
Q 027302 30 GLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEIS---------TVGAEVEA 100 (225)
Q Consensus 30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS---------~vGs~lda 100 (225)
.|..|+...+-+++++.+|++.+++..++.++++.+++-|++-+..-|+.+.+|+...++=++ .-+.+++.
T Consensus 21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ 100 (239)
T COG1579 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQI 100 (239)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 466777889999999999999999999999999999999999999999999999999887653 33444444
Q ss_pred HHHhhhhhhhHHHHHHHHhhHHHHHHHHHh
Q 027302 101 LKKEQESLRDGFIVQMFELNDKIRTFHKSI 130 (225)
Q Consensus 101 LK~~~~~~r~~Fis~m~~LN~kIR~FQq~i 130 (225)
+|......+ +.+.+++.++.+-++-+
T Consensus 101 ak~r~~~le----~el~~l~~~~~~l~~~i 126 (239)
T COG1579 101 AKERINSLE----DELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 444433333 33455555554444443
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=93.81 E-value=5.8 Score=39.23 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=44.6
Q ss_pred hcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHH
Q 027302 21 KSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEA 100 (225)
Q Consensus 21 kS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~lda 100 (225)
...-++++..|+.++..+..+++.++..++....-.+..+.+|.-...+|.-....+..++.++..++.++..+-+++..
T Consensus 351 ~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~ 430 (880)
T PRK02224 351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE 430 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555555555544445555554333333222344556666666666666666666655
Q ss_pred HHHh
Q 027302 101 LKKE 104 (225)
Q Consensus 101 LK~~ 104 (225)
++..
T Consensus 431 ~~~~ 434 (880)
T PRK02224 431 LEAT 434 (880)
T ss_pred HHHH
Confidence 5554
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.59 E-value=5.1 Score=41.88 Aligned_cols=193 Identities=20% Similarity=0.271 Sum_probs=89.0
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhh
Q 027302 17 FASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGA 96 (225)
Q Consensus 17 Fa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs 96 (225)
.-.+.+.-++|+..|..++.......+....+++....-...++..+....-.+.-....+..+...+..++.++..+..
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 877 (1163)
T COG1196 798 LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED 877 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333455555555555555555555566666555555555566555555554455555555556666666666666
Q ss_pred hHHHHHHhhhhhh---hHHHHHHHHhhHHHHHHHHHhhh---hcccCCCcCcccccccccccccCCChhhhhhHHHHHHH
Q 027302 97 EVEALKKEQESLR---DGFIVQMFELNDKIRTFHKSIAF---NLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIA 170 (225)
Q Consensus 97 ~ldaLK~~~~~~r---~~Fis~m~~LN~kIR~FQq~i~~---el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~ 170 (225)
++..++....... ...-+...+++..|..+...+.. ....-.. ..... .+........+++. .+...+.
T Consensus 878 ~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~-~~~~~i~ 952 (1163)
T COG1196 878 ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEV-ELPEL---EEELEEEYEDTLET-ELEREIE 952 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhhhccccccchhH-HHHHHHH
Confidence 5555554433222 22222333333333222222211 0000000 00000 00000000000010 3344444
Q ss_pred HHHhhhhhh-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027302 171 EVVSQTARE-------EELYQEEEKIQKQVQLELIDLERKVSLMEMIAYET 214 (225)
Q Consensus 171 dvvSq~~~E-------eeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~et 214 (225)
..-..+..- -++|......++.+..++.|+.+.+.-..-++.++
T Consensus 953 ~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~ 1003 (1163)
T COG1196 953 RLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEEL 1003 (1163)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332222 67899999999999999999876554443333333
No 5
>PRK11637 AmiB activator; Provisional
Probab=93.52 E-value=0.41 Score=44.08 Aligned_cols=83 Identities=11% Similarity=0.265 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhh
Q 027302 30 GLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLR 109 (225)
Q Consensus 30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r 109 (225)
.++++|+.++.++.....++...+.-...++.+|...+-++.-....|..+++.|+.++.+|...-.++..++..-...+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777777777777777777888888888888887777777777655554
Q ss_pred hHH
Q 027302 110 DGF 112 (225)
Q Consensus 110 ~~F 112 (225)
..|
T Consensus 124 ~~l 126 (428)
T PRK11637 124 RLL 126 (428)
T ss_pred HHH
Confidence 444
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.01 E-value=0.7 Score=40.17 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=38.8
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHH
Q 027302 73 NNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFE 118 (225)
Q Consensus 73 n~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~ 118 (225)
.+..|..|+.+++.|+.|+...-++++.|+...+...+....++|-
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~ 175 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFM 175 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778999999999999999999999999988877766666654
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.63 E-value=8 Score=33.34 Aligned_cols=103 Identities=29% Similarity=0.402 Sum_probs=61.4
Q ss_pred cchhHHHHHHHHHH-------HHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhh
Q 027302 24 GERRVVGLKKRIEK-------LRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGA 96 (225)
Q Consensus 24 GErrv~~Lkkri~~-------l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs 96 (225)
.+|+...|..|... |...+..|..-.+.+-+--+.+..-|..-+..|.-...-...+|++|..|.+++..||+
T Consensus 76 ~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~ 155 (237)
T PF00261_consen 76 SERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGN 155 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 35555555444333 33333333333333333333333444444555555677788899999999999999999
Q ss_pred hHHHHHHhhh--hhh-hHHHHHHHHhhHHHHHH
Q 027302 97 EVEALKKEQE--SLR-DGFIVQMFELNDKIRTF 126 (225)
Q Consensus 97 ~ldaLK~~~~--~~r-~~Fis~m~~LN~kIR~F 126 (225)
.+..|-.... ..| +.|-..+-.|+.++...
T Consensus 156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999877753 333 55555555555555443
No 8
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.46 E-value=4.2 Score=32.32 Aligned_cols=105 Identities=22% Similarity=0.280 Sum_probs=59.1
Q ss_pred hhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHH---HHHHHHhhhhhhhhhh
Q 027302 20 EKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQAL---ESRISLIHNEISTVGA 96 (225)
Q Consensus 20 EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~L---EAris~iQ~EiS~vGs 96 (225)
+++--+.-+..++.++......+..+..+++.-...-..|++. |+-+|......++.| .+..+.++.+|+..-+
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~---YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQK---YERELVKHAEDIKELQQLREELQELQQEINELKA 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666666666666666666665533333333332 888888888766554 4566666666666666
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHhhHHHHHHH
Q 027302 97 EVEALKKEQESLRDGFIVQMFELNDKIRTFH 127 (225)
Q Consensus 97 ~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQ 127 (225)
.++..+..-...+..+-.+=..|...|....
T Consensus 81 ~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~ 111 (132)
T PF07926_consen 81 EAESAKAELEESEASWEEQKEQLEKELSELE 111 (132)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6666555555444444444444444444433
No 9
>PRK11637 AmiB activator; Provisional
Probab=90.91 E-value=13 Score=34.35 Aligned_cols=88 Identities=11% Similarity=0.195 Sum_probs=56.6
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhh
Q 027302 17 FASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGA 96 (225)
Q Consensus 17 Fa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs 96 (225)
|++..+.-+.+...+++.|..++.++.....++..+..-.+.++.+|...+-++.-...-|..++..|..++.+|...-.
T Consensus 38 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 38 FSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666777777777777777666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHh
Q 027302 97 EVEALKKE 104 (225)
Q Consensus 97 ~ldaLK~~ 104 (225)
+++.++..
T Consensus 118 ~l~~~~~~ 125 (428)
T PRK11637 118 QQAAQERL 125 (428)
T ss_pred HHHHHHHH
Confidence 66555443
No 10
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.21 E-value=23 Score=39.15 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=63.5
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChh
Q 027302 80 LESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPE 159 (225)
Q Consensus 80 LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~ 159 (225)
++..+..++.++.....+++.|+.. .......+..+..++.+.++.+.---.-...||..+
T Consensus 374 leeeleeleeEleelEeeLeeLqeq----Laelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~--------------- 434 (1486)
T PRK04863 374 ADEQQEENEARAEAAEEEVDELKSQ----LADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPD--------------- 434 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------------
Confidence 3334444444444444555544433 244566777777777777777754433333455422
Q ss_pred hhhhHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027302 160 VALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVSLMEMIAYE 213 (225)
Q Consensus 160 vd~e~i~~~l~dvvSq~~~EeeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~e 213 (225)
++.+.|.+++..--+++..-...+..-.........++..++.+..+.-.+.|+
T Consensus 435 ~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 435 LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 244556666666555554445555555555555666666666666666666554
No 11
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.21 E-value=8.9 Score=37.68 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQL 55 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~ 55 (225)
.+...-|..||.+++.+++.|..++++=|+-
T Consensus 193 ~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 193 TAAADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999999888888877763
No 12
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.16 E-value=20 Score=35.98 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=90.4
Q ss_pred hhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHH----HHHHhhhhhhhHHHHHHHHhhH
Q 027302 46 NFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVE----ALKKEQESLRDGFIVQMFELND 121 (225)
Q Consensus 46 naElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ld----aLK~~~~~~r~~Fis~m~~LN~ 121 (225)
+.++|...++++.+-.=|+.-+..++==..-+++-++++-+|+.+--.+...|. .||........+.-..+.+
T Consensus 372 ~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~--- 448 (594)
T PF05667_consen 372 NEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQE--- 448 (594)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHH---
Confidence 333444444444443334444444433345566667788888888888877554 4554444333334333322
Q ss_pred HHHHHHH---HhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHH
Q 027302 122 KIRTFHK---SIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELI 198 (225)
Q Consensus 122 kIR~FQq---~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~EeeeY~~e~~~~eqv~qELa 198 (225)
|+.+++ -+..++..+...-. .......... +.++--+--.-|-++|+||.|-.++-.+-+.|-..||.|+-
T Consensus 449 -ik~~r~~~k~~~~e~~~Kee~~~-qL~~e~e~~~----k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN 522 (594)
T PF05667_consen 449 -IKELREEIKEIEEEIRQKEELYK-QLVKELEKLP----KDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEIN 522 (594)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCC----CCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 22222222221000 0000011111 12345566778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027302 199 DLERKVSLMEMIAYET 214 (225)
Q Consensus 199 D~qaK~sLMe~i~~et 214 (225)
.+..|..-=-+|+.|+
T Consensus 523 ~l~gkL~RtF~v~dEl 538 (594)
T PF05667_consen 523 SLTGKLDRTFTVTDEL 538 (594)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 9999877666666654
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.82 E-value=17 Score=33.82 Aligned_cols=105 Identities=10% Similarity=0.239 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecc----------------hhhHHHHHHHHHHhhhhh
Q 027302 28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALN----------------NTAFQALESRISLIHNEI 91 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln----------------~~siq~LEAris~iQ~Ei 91 (225)
+..|+..|.+++...+.....|..++.....++.++..++..+.+. +.-+..|+..|..|+.++
T Consensus 236 l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l 315 (562)
T PHA02562 236 IEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSL 315 (562)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333334445555555555554444433332 223344444444444444
Q ss_pred hhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302 92 STVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 92 S~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~e 133 (225)
..+-..+..++.... .+...-..+.+++..|++....+...
T Consensus 316 ~~l~~~i~~~~~~~~-~~~~~~~~i~el~~~i~~~~~~i~~~ 356 (562)
T PHA02562 316 EKLDTAIDELEEIMD-EFNEQSKKLLELKNKISTNKQSLITL 356 (562)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433332 24556666777777777777776553
No 14
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.78 E-value=7.2 Score=34.23 Aligned_cols=26 Identities=8% Similarity=0.277 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHH
Q 027302 77 FQALESRISLIHNEISTVGAEVEALK 102 (225)
Q Consensus 77 iq~LEAris~iQ~EiS~vGs~ldaLK 102 (225)
+..+++.+..++.++....++++.++
T Consensus 205 ~~~~~~~l~~~~~~l~~~~~~l~~~~ 230 (423)
T TIGR01843 205 RAEAQGELGRLEAELEVLKRQIDELQ 230 (423)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555444443
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.60 E-value=17 Score=33.70 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhh
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQE 106 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~ 106 (225)
++..++..++.+..++.....+++.....-+..+..+. ..++.++..+.-+..+....-++++.|+..-.
T Consensus 175 ~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~----------~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~ 244 (562)
T PHA02562 175 KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG----------ENIARKQNKYDELVEEAKTIKAEIEELTDELL 244 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666665555544444333333322 23455555555544444444444444444433
Q ss_pred hhhhH----------HHHHHHHhhHHHHHHHHHhhhh
Q 027302 107 SLRDG----------FIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 107 ~~r~~----------Fis~m~~LN~kIR~FQq~i~~e 133 (225)
..+.. --..+-.+...+..+++.+.+-
T Consensus 245 ~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 245 NLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33211 1122333444556666665544
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=89.28 E-value=25 Score=34.96 Aligned_cols=174 Identities=16% Similarity=0.179 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhH-------HHHHHHHHHhhhhhhhhhhhHH
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAF-------QALESRISLIHNEISTVGAEVE 99 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~si-------q~LEAris~iQ~EiS~vGs~ld 99 (225)
.+..+..+|..++..++....++...+......+.++..+.-++....... ..|+.++.-|+.+++..+.++.
T Consensus 259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~ 338 (880)
T PRK02224 259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ 338 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555554444333 3344555555555555555555
Q ss_pred HHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHHHHHHHhhhhh-
Q 027302 100 ALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAR- 178 (225)
Q Consensus 100 aLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~- 178 (225)
.+... -..|......|...+...+..++.--.+- ...........-++..+...+.++-+++..
T Consensus 339 ~~~~~----~e~~~~~~~~le~~~~~l~~~~~~l~~~~-----------~~~~~~l~~~~~~l~~l~~el~el~~~l~~~ 403 (880)
T PRK02224 339 AHNEE----AESLREDADDLEERAEELREEAAELESEL-----------EEAREAVEDRREEIEELEEEIEELRERFGDA 403 (880)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44432 14455555555555555544433110000 000000011122445555555555444321
Q ss_pred ------hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027302 179 ------EEELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETG 215 (225)
Q Consensus 179 ------EeeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~etk 215 (225)
-+..+..-+...+.++.++..++..+......+.+++
T Consensus 404 ~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 404 PVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333344445566677777777777776666655554
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=88.51 E-value=27 Score=34.45 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHH
Q 027302 31 LKKRIEKLRLELEAENFEREEA 52 (225)
Q Consensus 31 Lkkri~~l~~e~daanaElE~a 52 (225)
|...++.++.+++.++.++..+
T Consensus 675 l~~e~~~l~~~~~~l~~~l~~~ 696 (1179)
T TIGR02168 675 RRREIEELEEKIEELEEKIAEL 696 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333333
No 18
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.27 E-value=5.3 Score=32.76 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHH
Q 027302 35 IEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIV 114 (225)
Q Consensus 35 i~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis 114 (225)
+.-|+.+.|.|..-.+++.----.++++... .+.-|.+|..+++.|.++|.++-..|..+|..-...- .-.+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~-------~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~-~~~~ 73 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQ-------KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE-KRKS 73 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHH
Confidence 3456666777766666665555555555544 3345677999999999999999999999888765443 3336
Q ss_pred HHHHhhHHHHHHHHHh
Q 027302 115 QMFELNDKIRTFHKSI 130 (225)
Q Consensus 115 ~m~~LN~kIR~FQq~i 130 (225)
++..||.||....+-+
T Consensus 74 ~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 74 NAEQLNRRIQLLEEEL 89 (143)
T ss_pred hHHHHHhhHHHHHHHH
Confidence 6778888886554433
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.98 E-value=23 Score=37.63 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhhcccc
Q 027302 189 IQKQVQLELIDLERKVSLME----MIAYETGSLQ 218 (225)
Q Consensus 189 ~~eqv~qELaD~qaK~sLMe----~i~~etk~LQ 218 (225)
+...+++|+..+..+++.+. .++|+++.|+
T Consensus 1048 ~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606 1048 QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667766666665554 3456666554
No 20
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.47 E-value=10 Score=32.74 Aligned_cols=104 Identities=29% Similarity=0.374 Sum_probs=73.4
Q ss_pred CchhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHH
Q 027302 4 SDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESR 83 (225)
Q Consensus 4 ~d~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAr 83 (225)
.||.-.+-++++-|+.=..||= -|.-|+.||.+|-+--+--..=++..|+..+.+++. +.+..=.+.-|.-||..
T Consensus 65 dd~~~~f~~~~~tl~~LE~~GF-nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~----~~~~~~~e~~i~~Le~k 139 (190)
T PF05266_consen 65 DDSRSSFESLMKTLSELEEHGF-NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK----EAELKELESEIKELEMK 139 (190)
T ss_pred CCcHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHH
Confidence 3666777788888877666774 477889999998888777777788888887666665 33444556778888888
Q ss_pred HHHhhhh--------------hhhhhhhHHHHHHhhhhhhhHH
Q 027302 84 ISLIHNE--------------ISTVGAEVEALKKEQESLRDGF 112 (225)
Q Consensus 84 is~iQ~E--------------iS~vGs~ldaLK~~~~~~r~~F 112 (225)
|..+|++ |+.-.|++++++....+.+..|
T Consensus 140 i~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 140 ILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888884 5666666666666554444444
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.36 E-value=32 Score=36.62 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=58.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHH----------HhccceeeeecchhhHHHHHHHHHHhhhhhhhh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQ----------ELKGYEVELALNNTAFQALESRISLIHNEISTV 94 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~Eq----------eL~G~evqlaln~~siq~LEAris~iQ~EiS~v 94 (225)
.+.+..|...|..+..+++....+++.....++.... +++|-.++++=.....+.|+.++..+..++...
T Consensus 821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l 900 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL 900 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665544444444433333 344444444444455566777777766666666
Q ss_pred hhhHHHHHHhhh--------------hhhhHHHHHHHHhhHHHHHHHHHhh
Q 027302 95 GAEVEALKKEQE--------------SLRDGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 95 Gs~ldaLK~~~~--------------~~r~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
+.++..++..-. ..+...=..+-++..+++.|+..++
T Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1311)
T TIGR00606 901 IREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK 951 (1311)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555444332 2333344445555566666666554
No 22
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.92 E-value=30 Score=37.70 Aligned_cols=176 Identities=19% Similarity=0.196 Sum_probs=88.8
Q ss_pred hHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhh
Q 027302 9 HLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIH 88 (225)
Q Consensus 9 qLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ 88 (225)
+|+--|++.-. ++. +|....-.|..|.+.+.-+.-+++..||.-+.-++||.+ .++-|-.++
T Consensus 663 rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~--------------~~~~i~~~~ 724 (1141)
T KOG0018|consen 663 RLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQR--------------TESEIDEFG 724 (1141)
T ss_pred HHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhC
Confidence 44445555544 222 333334444444444555555666677666666666555 444444444
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHH
Q 027302 89 NEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDK 168 (225)
Q Consensus 89 ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~ 168 (225)
-+||.+--+++- +-.-|.+|-.++++-+..|--.|-...++-+ .-.++..-...-+--..-+.+.
T Consensus 725 p~i~~i~r~l~~-----------~e~~~~~L~~~~n~ved~if~~f~~~igv~i----r~Yee~~~~~~~a~k~~ef~~q 789 (1141)
T KOG0018|consen 725 PEISEIKRKLQN-----------REGEMKELEERMNKVEDRIFKGFCRRIGVRI----REYEERELQQEFAKKRLEFENQ 789 (1141)
T ss_pred chHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhhcCeee----ehHHHHHHHHHHHHHHHHHHHH
Confidence 444433333332 3334566666666666555555544443221 1112222101101111223445
Q ss_pred HHHHHhhhhhh-----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027302 169 IAEVVSQTARE-----EELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETGSL 217 (225)
Q Consensus 169 l~dvvSq~~~E-----eeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~etk~L 217 (225)
++.+-++|+=| ...|-.....-++++.|+..++..+.-|.++.+++..|
T Consensus 790 ~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~ 843 (1141)
T KOG0018|consen 790 KAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEEL 843 (1141)
T ss_pred HHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHH
Confidence 55555555555 44555666666677777777777777777777776444
No 23
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=85.75 E-value=5.4 Score=32.99 Aligned_cols=69 Identities=33% Similarity=0.378 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
=+|+..+-+++..++..++++....+.+....+.. ....-..++..|..+..|+++.-.|+++||..
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~-------------~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL-------------LKEENKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888877766555444432 22333447888999999999999999999986
Q ss_pred hh
Q 027302 105 QE 106 (225)
Q Consensus 105 ~~ 106 (225)
-.
T Consensus 184 ~~ 185 (192)
T PF05529_consen 184 SE 185 (192)
T ss_pred HH
Confidence 43
No 24
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.69 E-value=20 Score=30.01 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhh
Q 027302 29 VGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESL 108 (225)
Q Consensus 29 ~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~ 108 (225)
..|+.+|.-|.++++....+.+.+.+-.|++-. .|.+|++.|+-+-.+....-.+|+.|...
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~--------------eie~L~~el~~lt~el~~L~~EL~~l~sE---- 81 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKA--------------EIETLEEELEELTSELNQLELELDTLRSE---- 81 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 345555555555555555555444444333322 24557776666666666666677776655
Q ss_pred hhHHHHHHHHhhHHHHHHHHH
Q 027302 109 RDGFIVQMFELNDKIRTFHKS 129 (225)
Q Consensus 109 r~~Fis~m~~LN~kIR~FQq~ 129 (225)
++..-....+++.+|..+-..
T Consensus 82 k~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666666655433
No 25
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.38 E-value=21 Score=29.91 Aligned_cols=99 Identities=22% Similarity=0.297 Sum_probs=55.6
Q ss_pred CchhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecc-hhhHHHHHH
Q 027302 4 SDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALN-NTAFQALES 82 (225)
Q Consensus 4 ~d~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln-~~siq~LEA 82 (225)
-||.+-|=-.|||.-..-..-.+.|....-.-..+...++.+..+.+ ....-|+.=|.-+.=.||-. -.-++.++.
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~---~~~~~A~~Al~~g~edLAr~al~~k~~~e~ 98 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAE---KWEKQAELALAAGREDLAREALQRKADLEE 98 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 47887777889988776666555554444443344444444443322 11222233333222233322 244566777
Q ss_pred HHHHhhhhhhhhhhhHHHHHHhh
Q 027302 83 RISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 83 ris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
.+..++..+......++.|+..-
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l 121 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQL 121 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887777663
No 26
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=83.36 E-value=14 Score=26.30 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhH
Q 027302 32 KKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDG 111 (225)
Q Consensus 32 kkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~ 111 (225)
+..+...+.....+...|+....-+......+.+.. . .+++..+.....-++.|...|......++.++......|..
T Consensus 4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~ 81 (123)
T PF02050_consen 4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREE 81 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777777777777777 5 66777777777777777777777777888888777777776
Q ss_pred HHHHHHHhh
Q 027302 112 FIVQMFELN 120 (225)
Q Consensus 112 Fis~m~~LN 120 (225)
+...+-+..
T Consensus 82 l~~a~~~~k 90 (123)
T PF02050_consen 82 LQEARRERK 90 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 27
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.18 E-value=28 Score=29.27 Aligned_cols=88 Identities=19% Similarity=0.284 Sum_probs=54.1
Q ss_pred HhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhh
Q 027302 16 DFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVG 95 (225)
Q Consensus 16 DFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vG 95 (225)
.-..+..+=+.|+..|+.+|+.++.+++..+..+++.+..-+.....|. -.....+.....+..+++++...-
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~ 132 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-------ASQDLVESRQEQLEELQNELEERK 132 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556777777777777777777777777776666555555554 223444555566666667777666
Q ss_pred hhHHHHHHhhhhhhh
Q 027302 96 AEVEALKKEQESLRD 110 (225)
Q Consensus 96 s~ldaLK~~~~~~r~ 110 (225)
..+..+...-..-|.
T Consensus 133 ~~l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 133 QRLSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666665555433333
No 28
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=81.85 E-value=14 Score=41.86 Aligned_cols=145 Identities=19% Similarity=0.267 Sum_probs=95.1
Q ss_pred hcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHH
Q 027302 21 KSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEA 100 (225)
Q Consensus 21 kS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~lda 100 (225)
-+|-.++.+++-|.|..++..+--.+.+++.+.|+++.+...+.- .|.|+..++.|+-..-.++++
T Consensus 1620 ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~--------------aerr~~~l~~E~eeL~~~l~~ 1685 (1930)
T KOG0161|consen 1620 LDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAE--------------AERRLAALQAELEELREKLEA 1685 (1930)
T ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777888888877766554433 788999999999999999998
Q ss_pred HHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHHHHHHHhhhhhhH
Q 027302 101 LKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREE 180 (225)
Q Consensus 101 LK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~Ee 180 (225)
+-+..- .-=+...+++..|+.|.- .++.++ ....+... ++-.+...|.++.++...=+
T Consensus 1686 ~~Rarr----~aE~e~~E~~e~i~~~~~--------~~s~l~-------~~KrklE~---~i~~l~~elee~~~~~~~~~ 1743 (1930)
T KOG0161|consen 1686 LERARR----QAELELEELAERVNELNA--------QNSSLT-------AEKRKLEA---EIAQLQSELEEEQSELRAAE 1743 (1930)
T ss_pred HHHHHH----hhHHHHHHHHHHHHHHhh--------cccchh-------hHHHHHHH---HHHHHHHHHHHHHHHHHhhH
Confidence 866532 111222344444443321 111111 22222233 77788888888888888888
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 027302 181 ELYQEEEKIQKQVQLELIDLE 201 (225)
Q Consensus 181 eeY~~e~~~~eqv~qELaD~q 201 (225)
+.+++-+.+-.++.-||..=|
T Consensus 1744 Er~kka~~~a~~~~~el~~Eq 1764 (1930)
T KOG0161|consen 1744 ERAKKAQADAAKLAEELRKEQ 1764 (1930)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 888888877777776666544
No 29
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=81.24 E-value=57 Score=37.40 Aligned_cols=155 Identities=19% Similarity=0.269 Sum_probs=109.1
Q ss_pred hhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHh
Q 027302 8 KHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLI 87 (225)
Q Consensus 8 KqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~i 87 (225)
|.|-..+|++.+.----|..+.+|++-...+-+.++.-...|+.-++.+-..|...+-++-+|...-.+|..+..-+.++
T Consensus 988 k~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el 1067 (1930)
T KOG0161|consen 988 KELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEEL 1067 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44556777777665556778889999999999999988888888888888888777777777877778888888888888
Q ss_pred hhhhhhhhhhHHHHHHhhhh---hhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChhhhhhH
Q 027302 88 HNEISTVGAEVEALKKEQES---LRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKT 164 (225)
Q Consensus 88 Q~EiS~vGs~ldaLK~~~~~---~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~ 164 (225)
+++..+.-+++-.|....+. .--.|--++-+|=++|..-++....+ -++..++....++-.. .++.
T Consensus 1068 ~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~e--------r~~r~K~ek~r~dL~~---ele~ 1136 (1930)
T KOG0161|consen 1068 DNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAE--------RASRAKAERQRRDLSE---ELEE 1136 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---HHHH
Confidence 88888888888887776542 22445555555555555555544433 3344555555554444 6777
Q ss_pred HHHHHHHHH
Q 027302 165 LEDKIAEVV 173 (225)
Q Consensus 165 i~~~l~dvv 173 (225)
+...|.+..
T Consensus 1137 l~~~Lee~~ 1145 (1930)
T KOG0161|consen 1137 LKEELEEQG 1145 (1930)
T ss_pred HHHHHHHHh
Confidence 777777763
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.89 E-value=40 Score=29.29 Aligned_cols=52 Identities=12% Similarity=0.353 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHH
Q 027302 75 TAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTF 126 (225)
Q Consensus 75 ~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~F 126 (225)
..|++|++.++.++.........+..|.......+..|-..+-.|...|.+.
T Consensus 223 ~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l 274 (312)
T PF00038_consen 223 RQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAEL 274 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 3455566666666666655566666666555555555555555555444433
No 31
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.83 E-value=29 Score=33.45 Aligned_cols=106 Identities=16% Similarity=0.273 Sum_probs=80.0
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhh
Q 027302 12 TLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEI 91 (225)
Q Consensus 12 slIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~Ei 91 (225)
.-+++++..-+.-..|+..+..||..++.-...-+..++.....++.++.+|.. +.-.+..+..|+.++..++.+.
T Consensus 287 ~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~----l~~~~~~le~L~~el~~l~~~l 362 (563)
T TIGR00634 287 RELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQ----LDDSDESLEALEEEVDKLEEEL 362 (563)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHH
Confidence 345666666666778888899999988888888888888888999999999887 3344567899999999999999
Q ss_pred hhhhhhHHHHHHh-hhhhhhHHHHHHHHhhH
Q 027302 92 STVGAEVEALKKE-QESLRDGFIVQMFELND 121 (225)
Q Consensus 92 S~vGs~ldaLK~~-~~~~r~~Fis~m~~LN~ 121 (225)
...+..|-..... -..+...+...+..||-
T Consensus 363 ~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m 393 (563)
T TIGR00634 363 DKAAVALSLIRRKAAERLAKRVEQELKALAM 393 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999998887444 33444555555555544
No 32
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=79.51 E-value=16 Score=38.42 Aligned_cols=95 Identities=23% Similarity=0.342 Sum_probs=70.0
Q ss_pred HHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhh
Q 027302 14 IRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEIST 93 (225)
Q Consensus 14 IRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~ 93 (225)
+.+...+.+.....+..|+++|+.+....+.-...++..++-...++.++.+-..++.-...-+..|++.++.+.+.++.
T Consensus 385 ~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 464 (1163)
T COG1196 385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKE 464 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667777788888888888888888888888888778888888876667777777777788777777777777
Q ss_pred hhhhHHHHHHhhhhh
Q 027302 94 VGAEVEALKKEQESL 108 (225)
Q Consensus 94 vGs~ldaLK~~~~~~ 108 (225)
++.++..+...-...
T Consensus 465 ~~~~~~~~~~~~~~~ 479 (1163)
T COG1196 465 LERELAELQEELQRL 479 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776666654433
No 33
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.78 E-value=32 Score=37.49 Aligned_cols=124 Identities=20% Similarity=0.251 Sum_probs=69.0
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhh-----
Q 027302 15 RDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHN----- 89 (225)
Q Consensus 15 RDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~----- 89 (225)
++-.--++.-|||+..|.+-|..+...+++...++|..-+-.+...-|.---+-++..+....+.++..|+.|-.
T Consensus 776 ~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l 855 (1174)
T KOG0933|consen 776 KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNL 855 (1174)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555789999999999999999999998888887776665443332222233333333333333333333
Q ss_pred --hhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCc
Q 027302 90 --EISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGT 142 (225)
Q Consensus 90 --EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ 142 (225)
.|+.+-.+++.+-.... .---.|-..|+.|+.+-....-++.+.....+
T Consensus 856 ~~kv~~~~~~~~~~~~el~----~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l 906 (1174)
T KOG0933|consen 856 EAKVDKVEKDVKKAQAELK----DQKAKQRDIDTEISGLLTSQEKCLSEKSDGEL 906 (1174)
T ss_pred HHHHHhHHhHHHHHHHHHH----HHHHHHHhhhHHHhhhhhHHHHHHHHhhcccc
Confidence 33333333333222211 11223456677777777776666665554433
No 34
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=78.68 E-value=16 Score=31.45 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=24.8
Q ss_pred HHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhh
Q 027302 59 IEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRD 110 (225)
Q Consensus 59 ~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~ 110 (225)
.|..++..+-+|.=.+.-+...|.++..|+.+|..+-.+|+..|........
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444344444444444445555555555555555555555555443333
No 35
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.46 E-value=50 Score=36.47 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHH
Q 027302 81 ESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTF 126 (225)
Q Consensus 81 EAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~F 126 (225)
.++|..||+.|-.+|.+.=--.. +.=+.--.+|..|++.|++-
T Consensus 884 k~~i~~lq~~i~~i~~e~~q~qk---~kv~~~~~~~~~l~~~i~k~ 926 (1293)
T KOG0996|consen 884 KARIKELQNKIDEIGGEKVQAQK---DKVEKINEQLDKLEADIAKL 926 (1293)
T ss_pred HHHHHHHHHHHHHhhchhhHHhH---HHHHHHHHHHHHHHHHHHHh
Confidence 46666666666666654311111 11123344555555555543
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.37 E-value=47 Score=30.11 Aligned_cols=93 Identities=25% Similarity=0.341 Sum_probs=45.4
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHHHHHhhh---------hhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHH
Q 027302 15 RDFASEKSQGERRVVGLKKRIEKLRLELEAE---------NFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRIS 85 (225)
Q Consensus 15 RDFa~EkS~GErrv~~Lkkri~~l~~e~daa---------naElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris 85 (225)
-||=.+.|++|-++..++.|+...+..++++ +-|+..||+=...++.+|-- |.-++.
T Consensus 55 e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~--------------l~~~~~ 120 (239)
T COG1579 55 EDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAE--------------LMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 3455566677777777777777766655433 33444444444433333322 333444
Q ss_pred HhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhH
Q 027302 86 LIHNEISTVGAEVEALKKEQESLRDGFIVQMFELND 121 (225)
Q Consensus 86 ~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~ 121 (225)
+|+++|...-..+..+...-...+..+-..+-.++.
T Consensus 121 ~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 121 KLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433444444444444444
No 37
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=76.62 E-value=41 Score=27.62 Aligned_cols=104 Identities=21% Similarity=0.323 Sum_probs=76.2
Q ss_pred hHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhh
Q 027302 9 HLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIH 88 (225)
Q Consensus 9 qLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ 88 (225)
++=.-++++-.+..+-|..|.+|.+++.-+..++|.+...|..+|..-+..+....-.+ +|..||..|.
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~rriq~LE 86 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHHhhHHHHH
Confidence 34455677777778889999999999999999999999999999988777766543222 7889999999
Q ss_pred hhhhhhhhhHHHHHHhhh--hhh-hHHHHHHHHhhHHH
Q 027302 89 NEISTVGAEVEALKKEQE--SLR-DGFIVQMFELNDKI 123 (225)
Q Consensus 89 ~EiS~vGs~ldaLK~~~~--~~r-~~Fis~m~~LN~kI 123 (225)
+|+-..-..|.....+-. ..+ +.|-.+|..|..+.
T Consensus 87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~ 124 (143)
T PF12718_consen 87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQER 124 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence 999888777765543321 111 55555665555544
No 38
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.16 E-value=22 Score=28.30 Aligned_cols=98 Identities=17% Similarity=0.281 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHH
Q 027302 6 PKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRIS 85 (225)
Q Consensus 6 ~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris 85 (225)
...++..+|-+.-.-..+.-..-..|-.++-.++++.+..+..++..+.--+..+.++.+.+....=....+.++++.+-
T Consensus 32 ~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 32 NDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333333444455555555555555555555544455555554433333333344555666666
Q ss_pred HhhhhhhhhhhhHHHHHH
Q 027302 86 LIHNEISTVGAEVEALKK 103 (225)
Q Consensus 86 ~iQ~EiS~vGs~ldaLK~ 103 (225)
...+|+.+.-+-+...+.
T Consensus 112 ~~kee~~klk~~~~~~~t 129 (151)
T PF11559_consen 112 QEKEELQKLKNQLQQRKT 129 (151)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666555554444443
No 39
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.48 E-value=26 Score=31.20 Aligned_cols=93 Identities=24% Similarity=0.319 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhhh---hhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 28 VVGLKKRIEKLRLELEAE---NFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daa---naElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
...|++.+..++-++..| +-|+|..|-.--..|.+-++---|..--+.-.|+|.+.|--||+|=-++-.+.|.||..
T Consensus 45 ~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~ 124 (193)
T PF14662_consen 45 ITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR 124 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 556888888888888888 77888888776667777666555555556678889999999999988888888887766
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHHHHhh
Q 027302 105 QESLRDGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 105 ~~~~r~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
+.+|+.+.-..|.-|.
T Consensus 125 -----------~~eL~~~~~~Lq~Ql~ 140 (193)
T PF14662_consen 125 -----------SKELATEKATLQRQLC 140 (193)
T ss_pred -----------HHHHHHhhHHHHHHHH
Confidence 5777777766666663
No 40
>PRK09039 hypothetical protein; Validated
Probab=74.45 E-value=47 Score=30.71 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 027302 24 GERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKK 103 (225)
Q Consensus 24 GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~ 103 (225)
-+.|...|...|...+..+..++..+...++==++.+.. ++=-.+.|..+|++....|..|...|..|+....
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ-------LAALEAALDASEKRDRESQAKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666655555555444433333333 3444567777888888888888888888888763
Q ss_pred h-h---hhhhhHHHHHH
Q 027302 104 E-Q---ESLRDGFIVQM 116 (225)
Q Consensus 104 ~-~---~~~r~~Fis~m 116 (225)
. . ...|.+||..|
T Consensus 187 ~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 187 QRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 3 1 24456666544
No 41
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=74.32 E-value=75 Score=29.54 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 027302 26 RRVVGLKKRIEKLRLELEAENFEREEAK 53 (225)
Q Consensus 26 rrv~~Lkkri~~l~~e~daanaElE~aK 53 (225)
....-|..++..++.+++.+..++..-+
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777777666665543
No 42
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=74.07 E-value=27 Score=31.28 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=54.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 027302 24 GERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKK 103 (225)
Q Consensus 24 GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~ 103 (225)
-+++....+.|...|..++..|.+-++=.-..=...-.=||. -||...|.+|. .|.+++++|++.|=.
T Consensus 117 S~~kL~~tr~~Y~~L~~aM~~Ae~km~PVL~~~~D~vL~LKH-----NLNA~AI~sL~-------~e~~~~~~di~~Li~ 184 (201)
T PF11172_consen 117 SEQKLAETRRRYAQLIKAMRRAESKMQPVLAAFRDQVLYLKH-----NLNAQAIASLQ-------GEFSSIESDISQLIK 184 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhc-----cccHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 577888889999999999888887776665555555555666 57877777766 566666666666644
Q ss_pred hhh---hhhhHHHHHH
Q 027302 104 EQE---SLRDGFIVQM 116 (225)
Q Consensus 104 ~~~---~~r~~Fis~m 116 (225)
.-. .+-+.||..|
T Consensus 185 ~m~~sI~ead~FI~~l 200 (201)
T PF11172_consen 185 EMERSIAEADAFIASL 200 (201)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 321 2236676655
No 43
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=73.80 E-value=69 Score=28.93 Aligned_cols=101 Identities=21% Similarity=0.371 Sum_probs=70.1
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhH-------HHHHHHHHHhhhhhhhhhh
Q 027302 24 GERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAF-------QALESRISLIHNEISTVGA 96 (225)
Q Consensus 24 GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~si-------q~LEAris~iQ~EiS~vGs 96 (225)
.+|.+..|-.|...+...+++..+.|-+||-+-|.+.....----.|+|-+.-. -.=|+.+..|-++++-+||
T Consensus 44 ~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~ 123 (205)
T KOG1003|consen 44 SERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDS 123 (205)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 368888899999999999999999999999888877654443333344433222 2224667888899999999
Q ss_pred hHHHHHHhhh---hhhhHHHHHHHHhhHHHH
Q 027302 97 EVEALKKEQE---SLRDGFIVQMFELNDKIR 124 (225)
Q Consensus 97 ~ldaLK~~~~---~~r~~Fis~m~~LN~kIR 124 (225)
.+..|-.+.. -.++.|--.+-.+..|++
T Consensus 124 nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk 154 (205)
T KOG1003|consen 124 NLKSLSAKEEKLEQKEEKYEEELKELTDKLK 154 (205)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 9999987754 223555555555555554
No 44
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.43 E-value=46 Score=32.16 Aligned_cols=67 Identities=24% Similarity=0.261 Sum_probs=52.8
Q ss_pred HHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhh
Q 027302 41 ELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQES 107 (225)
Q Consensus 41 e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~ 107 (225)
.+......++.+..--+.+-.+|..|-=.+.+++..+..++.|++.++.-..+-|.+++.+......
T Consensus 267 ~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~ 333 (563)
T TIGR00634 267 SLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEK 333 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3344455566666666777778888888889999999999999999999999999888887766553
No 45
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=71.97 E-value=55 Score=28.79 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHH
Q 027302 76 AFQALESRISLIHNEISTVGAEVEAL 101 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaL 101 (225)
.+..+++.+..++.++..+-+++..+
T Consensus 211 ~l~~~~~~l~~~~~~l~~~~~~~~~~ 236 (423)
T TIGR01843 211 ELGRLEAELEVLKRQIDELQLERQQI 236 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 46
>PRK09039 hypothetical protein; Validated
Probab=71.45 E-value=86 Score=29.01 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 26 RRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 26 rrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
.+-..|..+|..++..+++|.++.+ .++..+.|..=..+-.......|++.......+++..-.+|..|+..-
T Consensus 74 ~~~~~l~~~l~~l~~~l~~a~~~r~-------~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI 146 (343)
T PRK09039 74 QGNQDLQDSVANLRASLSAAEAERS-------RLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQI 146 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344455555555555555544443 334333321111111123333344444444444444444444444443
Q ss_pred hhhh
Q 027302 106 ESLR 109 (225)
Q Consensus 106 ~~~r 109 (225)
..+|
T Consensus 147 ~aLr 150 (343)
T PRK09039 147 AALR 150 (343)
T ss_pred HHHH
Confidence 3333
No 47
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.33 E-value=24 Score=26.19 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhh-------hhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhh
Q 027302 79 ALESRISLIHNEI-------STVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 79 ~LEAris~iQ~Ei-------S~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
.||+.|+.||+.. +.-=++...|- .+|++|+++.-..=-.|.+++.-+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~----~ERd~~~~~l~~a~~e~~~Lk~E~e 57 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLR----RERDSAERQLGDAYEENNKLKEENE 57 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554 33333333333 4689999998777666666665443
No 48
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=70.19 E-value=26 Score=23.49 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHH-HhhhhhhhHHHHHHHHhhHHHHHHHHH
Q 027302 76 AFQALESRISLIHNEISTVGAEVEALK-KEQESLRDGFIVQMFELNDKIRTFHKS 129 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaLK-~~~~~~r~~Fis~m~~LN~kIR~FQq~ 129 (225)
.+..|......|++.+..+-+.++.|. .|....++.|...|-+++...+++.+.
T Consensus 12 ~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~ 66 (86)
T PF06013_consen 12 AAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEA 66 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777777777775 455567788888887777766555443
No 49
>smart00338 BRLZ basic region leucin zipper.
Probab=69.47 E-value=19 Score=25.20 Aligned_cols=46 Identities=28% Similarity=0.494 Sum_probs=27.6
Q ss_pred HHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhh
Q 027302 50 EEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLR 109 (225)
Q Consensus 50 E~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r 109 (225)
++|.++++--.+.+. .||.++..|..+.+...+.++.|.......+
T Consensus 15 ~aA~~~R~rKk~~~~--------------~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 15 EAARRSRERKKAEIE--------------ELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665555443 3666666666666666666666666644443
No 50
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=67.08 E-value=26 Score=35.24 Aligned_cols=90 Identities=21% Similarity=0.339 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccce-------eeeecchhhHHHHHH
Q 027302 10 LLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYE-------VELALNNTAFQALES 82 (225)
Q Consensus 10 LlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~e-------vqlaln~~siq~LEA 82 (225)
+..+|.+-+.+++.-|.-+..|+--+++++.-++-+. +.+..++.++.-+. -++++.-.=|-.||-
T Consensus 97 ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~-------k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 97 ARKLLDETARERAKLEIEITKLREELKELRKKLEKAE-------KERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4466666666666555555555555544444444332 22233333333222 222233333444444
Q ss_pred HHHHhhhhhhhhhhhHHHHHHhhh
Q 027302 83 RISLIHNEISTVGAEVEALKKEQE 106 (225)
Q Consensus 83 ris~iQ~EiS~vGs~ldaLK~~~~ 106 (225)
.+.+|..|++.+-.+|..+|..-+
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445555555555555555555433
No 51
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.00 E-value=93 Score=27.64 Aligned_cols=100 Identities=29% Similarity=0.346 Sum_probs=54.6
Q ss_pred chhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeee-cchhhHHHHHHH
Q 027302 5 DPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELA-LNNTAFQALESR 83 (225)
Q Consensus 5 d~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqla-ln~~siq~LEAr 83 (225)
||++.|=-.|||-=++--.-.+-+..+.-+=-.+.-.++.+.. .+....+-|+.=|....=.|| -....++.||-.
T Consensus 24 Dp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~---~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~ 100 (225)
T COG1842 24 DPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQA---RAEKLEEKAELALQAGNEDLAREALEEKQSLEDL 100 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 7888888888886554333333222222111111111111111 112222333333332222222 233678999999
Q ss_pred HHHhhhhhhhhhhhHHHHHHhhhh
Q 027302 84 ISLIHNEISTVGAEVEALKKEQES 107 (225)
Q Consensus 84 is~iQ~EiS~vGs~ldaLK~~~~~ 107 (225)
+..++.++.....-++.|+.....
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~ 124 (225)
T COG1842 101 AKALEAELQQAEEQVEKLKKQLAA 124 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988543
No 52
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=66.71 E-value=72 Score=29.82 Aligned_cols=75 Identities=15% Similarity=0.277 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhc------------cceeeeecchh----------hHHHHHHHH
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELK------------GYEVELALNNT----------AFQALESRI 84 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~------------G~evqlaln~~----------siq~LEAri 84 (225)
|...++.++..+...+.....++..-++.++.+++.+. ||..++..... ....++..+
T Consensus 166 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 245 (457)
T TIGR01000 166 QNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQI 245 (457)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34466777777777777777777777777776666543 44444433222 444555566
Q ss_pred HHhhhhhhhhhhhHHHH
Q 027302 85 SLIHNEISTVGAEVEAL 101 (225)
Q Consensus 85 s~iQ~EiS~vGs~ldaL 101 (225)
..++.+|+..-+.+..+
T Consensus 246 ~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 246 DQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 66666666666655554
No 53
>PRK03918 chromosome segregation protein; Provisional
Probab=66.40 E-value=1.4e+02 Score=29.56 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQEL 63 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL 63 (225)
++++..|+..+..+..++.....+++..+.....++++|
T Consensus 192 ~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l 230 (880)
T PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666555555444
No 54
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=65.74 E-value=1.9e+02 Score=30.88 Aligned_cols=99 Identities=26% Similarity=0.314 Sum_probs=54.7
Q ss_pred HhhhhhcccchhHHHHHHHHHHHH-------HHHhhhhhhHHHHHHhHHHHHHHhccceeeee--------cchhhHHHH
Q 027302 16 DFASEKSQGERRVVGLKKRIEKLR-------LELEAENFEREEAKQLKETIEQELKGYEVELA--------LNNTAFQAL 80 (225)
Q Consensus 16 DFa~EkS~GErrv~~Lkkri~~l~-------~e~daanaElE~aKr~kE~~EqeL~G~evqla--------ln~~siq~L 80 (225)
|||+++...+.++..+...|..+. ..+...+..++.+++.-..++++++..+..+. +....-+.+
T Consensus 597 d~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 597 DYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK 676 (1201)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665555555444443 34444455555666655556666555544332 223344455
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHH
Q 027302 81 ESRISLIHNEISTVGAEVEALKKEQESLRDGFIV 114 (225)
Q Consensus 81 EAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis 114 (225)
++|.+.++.++..+-.++..++..-.....++-.
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~ 710 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQELEELLEELKE 710 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777666554433333333
No 55
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=65.56 E-value=1.3e+02 Score=28.85 Aligned_cols=50 Identities=20% Similarity=0.421 Sum_probs=41.1
Q ss_pred HHHHhhhhhhhhhhhH-----HHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhh
Q 027302 83 RISLIHNEISTVGAEV-----EALKKEQESLRDGFIVQMFELNDKIRTFHKSIAF 132 (225)
Q Consensus 83 ris~iQ~EiS~vGs~l-----daLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~ 132 (225)
--.|+++++...+.++ ..++.....+|.++...+.+|+.+|..+++.+..
T Consensus 342 ~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~ 396 (582)
T PF09731_consen 342 HEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDA 396 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888887 5578888899999999999999999888776544
No 56
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=64.50 E-value=61 Score=24.65 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--------hhHHHHHHHHHHhhhhhhhhhhhHHH
Q 027302 29 VGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--------TAFQALESRISLIHNEISTVGAEVEA 100 (225)
Q Consensus 29 ~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--------~siq~LEAris~iQ~EiS~vGs~lda 100 (225)
..|+..++.+.+....-.+.+.+.+.+.+..+.==++..|-..+.+ ..+..|+.++.-|..+|+.+-..++.
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666555532123333222222 44566777777777777777777666
Q ss_pred HHHhhhhhhhHHHHHHHHhhHHHHHHH
Q 027302 101 LKKEQESLRDGFIVQMFELNDKIRTFH 127 (225)
Q Consensus 101 LK~~~~~~r~~Fis~m~~LN~kIR~FQ 127 (225)
|... |-++-.+|++-|
T Consensus 89 l~~~-----------~~elk~~l~~~~ 104 (105)
T cd00632 89 LQEK-----------LKELQEKIQQAQ 104 (105)
T ss_pred HHHH-----------HHHHHHHHHHHh
Confidence 6554 455555555544
No 57
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=63.78 E-value=39 Score=30.29 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHhHHHHHHHhccce
Q 027302 35 IEKLRLELEAENFEREEAKQLKETIEQELKGYE 67 (225)
Q Consensus 35 i~~l~~e~daanaElE~aKr~kE~~EqeL~G~e 67 (225)
|++++.++..+++++++.+.+-+..|.+|--.+
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888899999999999999999999885444
No 58
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=63.75 E-value=84 Score=31.79 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=75.9
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhh
Q 027302 17 FASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGA 96 (225)
Q Consensus 17 Fa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs 96 (225)
|-+|+..+=+-|..-.+...++.-++.....|++.+|.--+-+++++.|.+-.+-.....+-.|||.++++.--|..+-.
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 34455555455555555666777777788888888888888889999998888888888888899999999999999999
Q ss_pred hHHHHHHhhhhhhhHHH
Q 027302 97 EVEALKKEQESLRDGFI 113 (225)
Q Consensus 97 ~ldaLK~~~~~~r~~Fi 113 (225)
++.-||......|.++-
T Consensus 170 e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHHHhhhhHHHHH
Confidence 99999988887776653
No 59
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=63.31 E-value=81 Score=25.65 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
+.+...|.+.+++++........+++..+.........++.++-.+.-.+..+..+..++..++++++..-..++.+...
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 166 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQ 166 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666777777777777777777777777666666677777777777777775554444444444443
No 60
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=63.28 E-value=1.6e+02 Score=29.02 Aligned_cols=58 Identities=21% Similarity=0.429 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 33 KRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 33 kri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
+||...++++..-+.++...+.-+...+.+|+- +|..|+.|-.++.....+++.+...
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~--------------~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKS--------------LETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 889999999999999999998888888877765 7777777777777777777666655
No 61
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=62.10 E-value=1.6e+02 Score=28.73 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=29.6
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 027302 175 QTAREEELYQEEEKIQKQVQLELIDLERKVSLME-MIAY 212 (225)
Q Consensus 175 q~~~EeeeY~~e~~~~eqv~qELaD~qaK~sLMe-~i~~ 212 (225)
++++-+.+|.......+.+..+..|+..-..+.+ +|-+
T Consensus 470 Nm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 470 NMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444466899999999999999999988877777 4444
No 62
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=60.58 E-value=23 Score=26.06 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHH
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIE 60 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~E 60 (225)
-|..|..||.-|++|.....+++...+-.|.+|+
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAe 55 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKSASRAAAE 55 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999988888877776
No 63
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=60.17 E-value=14 Score=27.06 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 76 AFQALESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
-+|+|-+.|..|+.+|..+.+++.+.|.+-
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888763
No 64
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=59.91 E-value=69 Score=25.43 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=12.3
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 80 LESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 80 LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
.+.+=..|+.||+..-.-++.|..-
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555443
No 65
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=59.11 E-value=11 Score=27.76 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=26.5
Q ss_pred ecchhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 027302 71 ALNNTAFQALESRISLIHNEISTVGAEVEALK 102 (225)
Q Consensus 71 aln~~siq~LEAris~iQ~EiS~vGs~ldaLK 102 (225)
.|..-|+.-|+.||.+|+.||-.+...+..=+
T Consensus 17 dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 17 DLSLLSVEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred CchhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667889999999999999999888776533
No 66
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=58.69 E-value=2.8e+02 Score=30.36 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=57.9
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhH--HHHHHHHHHhhhhhhhhhhhHHHH
Q 027302 24 GERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAF--QALESRISLIHNEISTVGAEVEAL 101 (225)
Q Consensus 24 GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~si--q~LEAris~iQ~EiS~vGs~ldaL 101 (225)
=.||+..|..||..+..+++...+++.+....++.+.++..+++-...+.++-. .+-+..+.....++......++..
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a 819 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAA 819 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999888877777533 333333334444444444444333
No 67
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.86 E-value=1.3e+02 Score=26.11 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=29.2
Q ss_pred chhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 027302 5 DPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQ 54 (225)
Q Consensus 5 d~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr 54 (225)
++..++...+.....-..+-..++..+...-+.+..++...+.|++..+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655555555556666666666666666666666554443
No 68
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=57.86 E-value=2.9e+02 Score=30.38 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=24.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027302 181 ELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETG 215 (225)
Q Consensus 181 eeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~etk 215 (225)
+.|..++..+..+.-++.++++|-+.+...+...+
T Consensus 429 ~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 429 EKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667778888888888887776555444
No 69
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.57 E-value=92 Score=32.64 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhcc-------ceeeeecchh--hHHHHHHHHHHhhhhhhhhhhhH
Q 027302 28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKG-------YEVELALNNT--AFQALESRISLIHNEISTVGAEV 98 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G-------~evqlaln~~--siq~LEAris~iQ~EiS~vGs~l 98 (225)
+....+|+..|+-+.+--.+.++. +.|.| --|++.-|++ +-|....++..||-|++..-.-|
T Consensus 505 i~~~~ke~~~Le~En~rLr~~~e~---------~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l 575 (716)
T KOG4593|consen 505 IEQYLKELELLEEENDRLRAQLER---------RLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERL 575 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665555444433331 23333 3478888888 88999999999999999999878
Q ss_pred HHHHHhhhhhh----------------hHHHHHHHHhhHHHHHHHHHhhh
Q 027302 99 EALKKEQESLR----------------DGFIVQMFELNDKIRTFHKSIAF 132 (225)
Q Consensus 99 daLK~~~~~~r----------------~~Fis~m~~LN~kIR~FQq~i~~ 132 (225)
.+|+.-.-..+ -+|--++..+|.++++|-....+
T Consensus 576 ~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ 625 (716)
T KOG4593|consen 576 TALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFAS 625 (716)
T ss_pred HHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776544222 23566778888888777665543
No 70
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=56.63 E-value=1.8e+02 Score=27.67 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=58.5
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCccccccccccc
Q 027302 73 NNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNF 152 (225)
Q Consensus 73 n~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~ 152 (225)
....++.|+++|..+++++..+...+++++.. .+|-+.+.-... ..++- ..
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~-------------------~~~l~~~~~~~~--~~~~~--------~~ 119 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKAL-------------------AKFLEDIREGLT--EPIKD--------SA 119 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhhhhc--ccccc--------cc
Confidence 34578889999999999999999999999887 233332221100 00000 00
Q ss_pred ccCCChhhhhhHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027302 153 SKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVSL 206 (225)
Q Consensus 153 s~~~~~~vd~e~i~~~l~dvvSq~~~EeeeY~~e~~~~eqv~qELaD~qaK~sL 206 (225)
. ....+...+..++.-+-.++..-...-.+-....+++.++|..++++..-
T Consensus 120 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 120 K---RNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred c---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 01235556666666655555444333344444456667777777766543
No 71
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.29 E-value=82 Score=31.66 Aligned_cols=50 Identities=24% Similarity=0.354 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHhhh--------------hhhhHHHHHHH---HhhHHHHHHHH
Q 027302 79 ALESRISLIHNEISTVGAEVEALKKEQE--------------SLRDGFIVQMF---ELNDKIRTFHK 128 (225)
Q Consensus 79 ~LEAris~iQ~EiS~vGs~ldaLK~~~~--------------~~r~~Fis~m~---~LN~kIR~FQq 128 (225)
-|++|+-++-.|.+...|.+--||..-+ ..|...+..|. .||+++|+||+
T Consensus 301 nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ 367 (502)
T KOG0982|consen 301 NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQE 367 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665555433 55666776664 58999999986
No 72
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=55.97 E-value=99 Score=24.33 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHh---ccceeeeecc-----------------------------hh
Q 027302 28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQEL---KGYEVELALN-----------------------------NT 75 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL---~G~evqlaln-----------------------------~~ 75 (225)
...|+..++.+.+.+..-++.+.+.+.++++.+.== .|.++-+-+. +.
T Consensus 15 ~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~e 94 (140)
T PRK03947 15 LQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDE 94 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHH
Confidence 344677777788888778888888888887776422 3455555444 24
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 76 AFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
++..|+.|+..|...+.++-.++..++..
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 123 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASR 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888777777777777666654
No 73
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.55 E-value=1.9e+02 Score=27.48 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhh------hHHH-----HHHHHhhHHHHHHHHHhhhhcccCCCcCccccc
Q 027302 78 QALESRISLIHNEISTVGAEVEALKKEQESLR------DGFI-----VQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVS 146 (225)
Q Consensus 78 q~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r------~~Fi-----s~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~t 146 (225)
-.|-..|..+..|....-+.|+.|.......- .+|+ .+|.+|+...|.+|..+.-.+..+.+.-.+.++
T Consensus 138 ~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~ 217 (310)
T PF09755_consen 138 NKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNV 217 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhh
Confidence 34556666666666666666666655443221 4444 579999999999999988655544433322221
Q ss_pred ccccccccCCChhhhhhHHHHHHHHHHhhhhhhH
Q 027302 147 EADHNFSKKGVPEVALKTLEDKIAEVVSQTAREE 180 (225)
Q Consensus 147 eA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~Ee 180 (225)
....+.. ..++-....|.+-++....|+..-.
T Consensus 218 ~~~~Dt~--e~~~shI~~Lr~EV~RLR~qL~~sq 249 (310)
T PF09755_consen 218 SEENDTA--ERLSSHIRSLRQEVSRLRQQLAASQ 249 (310)
T ss_pred cccCCch--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111 1122344556665666555655443
No 74
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=53.04 E-value=2.4e+02 Score=27.97 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecc---------hhhHHHHHHHHHHhhhhhh
Q 027302 33 KRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALN---------NTAFQALESRISLIHNEIS 92 (225)
Q Consensus 33 kri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln---------~~siq~LEAris~iQ~EiS 92 (225)
.+|.++..++..|.+++.+++--...++..+....-...+. +..|+.|.++...++.++.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~ 305 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIA 305 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHH
Confidence 34444444455555554444444444444443221111111 1457777777777665544
No 75
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=52.72 E-value=4.2e+02 Score=30.84 Aligned_cols=155 Identities=20% Similarity=0.257 Sum_probs=87.2
Q ss_pred HHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHH
Q 027302 39 RLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFE 118 (225)
Q Consensus 39 ~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~ 118 (225)
+..+-.|.+++.+-+-.-...||-|.--.= . -+-+..-+||+|.++.++|+++-.++-.|+.....+++.--..-..
T Consensus 918 ~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks--~-lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~ 994 (1822)
T KOG4674|consen 918 KEELTDALSQIREYQEEYSSLEQSLESVKS--E-LDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKG 994 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 445555555555555554444544432100 0 1123456789999999999999988888888765555544444344
Q ss_pred hhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHH
Q 027302 119 LNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELI 198 (225)
Q Consensus 119 LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~EeeeY~~e~~~~eqv~qELa 198 (225)
+-++.--|.+.+++=..+-.+.-. . . .....-+..+...+...+.+.-+-...|..++.-|..+.++|.
T Consensus 995 ~e~~~~~~~~e~~sl~ne~~~~~~-~-------~---s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~ 1063 (1822)
T KOG4674|consen 995 KEDKLLDLSREISSLQNELKSLLK-A-------A---SQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLI 1063 (1822)
T ss_pred hhhhHHHHHHHhHHHHHHHHHHHH-H-------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555443111111110 0 0 0111134556666666666666668889999999988877777
Q ss_pred HHHHHHHHH
Q 027302 199 DLERKVSLM 207 (225)
Q Consensus 199 D~qaK~sLM 207 (225)
++..=.+=|
T Consensus 1064 kl~ee~~~~ 1072 (1822)
T KOG4674|consen 1064 KLREEFAKC 1072 (1822)
T ss_pred HHHHHHHHH
Confidence 766544433
No 76
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=52.24 E-value=1.3e+02 Score=24.78 Aligned_cols=77 Identities=16% Similarity=0.247 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhh
Q 027302 28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQES 107 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~ 107 (225)
|..+-+.|+.+-..+..+..+|- .|+ .+ =+..+....+.+..+++|+..++.|++.++...
T Consensus 45 ~~~v~kql~~vs~~l~~tKkhLs--qRI--------d~-------vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv-- 105 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSSTKKHLS--QRI--------DR-------VDDKLDEQKEISKQIKDEVTEVREDVSQIGDDV-- 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHH--------HH-------HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--
Confidence 45666777777777666666553 233 11 123444455666677777777777777666553
Q ss_pred hhhHHHHHHHHhhHHHHH
Q 027302 108 LRDGFIVQMFELNDKIRT 125 (225)
Q Consensus 108 ~r~~Fis~m~~LN~kIR~ 125 (225)
+.+..-+..|.+||-.
T Consensus 106 --~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 106 --DSVQQMVEGLEGKIDE 121 (126)
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 2223334455666543
No 77
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=52.13 E-value=2.7e+02 Score=28.29 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=51.7
Q ss_pred hhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHh
Q 027302 8 KHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLI 87 (225)
Q Consensus 8 KqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~i 87 (225)
.+|..-++-+..||.+.-+||..|.+.|.+|+.++...-. .+ .-+-....-+.|.+.+.+|
T Consensus 32 ~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~-------------~~------~pa~pse~E~~Lq~E~~~L 92 (617)
T PF15070_consen 32 QQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPP-------------PE------PPAGPSEVEQQLQAEAEHL 92 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-------------cc------ccccchHHHHHHHHHHHHH
Confidence 3556677778888888888888888888877766543320 00 0122334456789999999
Q ss_pred hhhhhhhhhhHHHH
Q 027302 88 HNEISTVGAEVEAL 101 (225)
Q Consensus 88 Q~EiS~vGs~ldaL 101 (225)
+.|+..+...+.+.
T Consensus 93 ~kElE~L~~qlqaq 106 (617)
T PF15070_consen 93 RKELESLEEQLQAQ 106 (617)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888888774
No 78
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=51.83 E-value=32 Score=31.05 Aligned_cols=70 Identities=26% Similarity=0.490 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 26 RRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 26 rrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
.-+...||.++..|..+|++.+-+..|++.- | .+.++.++.|..|++|+-.+.+.+
T Consensus 121 k~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~--------~---------~~~~~~~~K~~~l~ee~e~a~~k~------- 176 (246)
T cd07618 121 PNIQKQRKQLAKLVLDWDSARGRYNQAHKSS--------G---------TNFQAMPSKIDMLKEEMDEAGNKV------- 176 (246)
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHhccccC--------c---------cccccccchhhhhHHHHHHHHHHH-------
Confidence 3566778889999999999998887776531 1 233566788888888884444444
Q ss_pred hhhhhHHHHHHHHh
Q 027302 106 ESLRDGFIVQMFEL 119 (225)
Q Consensus 106 ~~~r~~Fis~m~~L 119 (225)
...+|.|...||.+
T Consensus 177 E~~kD~~~~dm~~~ 190 (246)
T cd07618 177 EQCKDQLAADMYNF 190 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 44567777777654
No 79
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=51.67 E-value=1.1e+02 Score=23.38 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 79 ALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 79 ~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
.|.+.|+.|+.+|+...-.|.-++..
T Consensus 85 ~l~~~l~~l~~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 85 KLKAELEELKSEISKLEEKLEEYKKY 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888888777777766
No 80
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.48 E-value=1.3e+02 Score=24.43 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 76 AFQALESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
|..-|...|..+..||....+-|+.|+...
T Consensus 110 t~~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 110 TNEELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344477788888888888888888888743
No 81
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=51.47 E-value=54 Score=28.32 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 027302 77 FQALESRISLIHNEISTVGAEVEALKK 103 (225)
Q Consensus 77 iq~LEAris~iQ~EiS~vGs~ldaLK~ 103 (225)
+-.+|.+++.+|.||-..-+.+..|..
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666555555444444444433
No 82
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=51.43 E-value=2.4e+02 Score=27.35 Aligned_cols=102 Identities=21% Similarity=0.290 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHH-------HhHHHHHHHhccceeeeecchh----hHHHHHHHHHHhhhhhhhhhhh
Q 027302 29 VGLKKRIEKLRLELEAENFEREEAK-------QLKETIEQELKGYEVELALNNT----AFQALESRISLIHNEISTVGAE 97 (225)
Q Consensus 29 ~~Lkkri~~l~~e~daanaElE~aK-------r~kE~~EqeL~G~evqlaln~~----siq~LEAris~iQ~EiS~vGs~ 97 (225)
..+...++-++.....+.+||..=| ..||..=+.||+....=.++.. -.-.|-..-.++++||...-..
T Consensus 217 ~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Q 296 (511)
T PF09787_consen 217 GELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQ 296 (511)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555554444 3344444555552222122210 0222334444555555555555
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHh
Q 027302 98 VEALKKEQESLRDGFIVQMFELNDKIRTFHKSI 130 (225)
Q Consensus 98 ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i 130 (225)
++.|+..-......+-.....+....++.+...
T Consensus 297 i~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~ 329 (511)
T PF09787_consen 297 IEQLRAELQDLEAQLEGEQESFREQPQELSQQL 329 (511)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 544444443333333333333333333333333
No 83
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=50.71 E-value=1.2e+02 Score=31.73 Aligned_cols=80 Identities=24% Similarity=0.362 Sum_probs=65.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 027302 23 QGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALK 102 (225)
Q Consensus 23 ~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK 102 (225)
.-...+..++.+|.+...-+....++|+.++..+..+|-+|++ -..+...|+.+...++.|+..+-+-+..|.
T Consensus 614 ~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~-------~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le 686 (769)
T PF05911_consen 614 SCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKA-------MKESYESLETRLKDLEAEAEELQSKISSLE 686 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3445677788888888888888999999999999999999987 356788888888888888888888888888
Q ss_pred Hhhhhhh
Q 027302 103 KEQESLR 109 (225)
Q Consensus 103 ~~~~~~r 109 (225)
..-...|
T Consensus 687 ~Ele~er 693 (769)
T PF05911_consen 687 EELEKER 693 (769)
T ss_pred HHHHHHH
Confidence 7755554
No 84
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.43 E-value=76 Score=32.90 Aligned_cols=97 Identities=25% Similarity=0.358 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeee---cchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhh
Q 027302 31 LKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELA---LNNTAFQALESRISLIHNEISTVGAEVEALKKEQES 107 (225)
Q Consensus 31 Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqla---ln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~ 107 (225)
+.+.++.++.+...-.+++++-|+.-|..+.+|.++.=++- .-+--|+.++.+|..|.-++..--+.++.|+++-..
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444433222111 112456778999999999999999999999988433
Q ss_pred hhhHHHHHHHHhhH------HHHHHHHHh
Q 027302 108 LRDGFIVQMFELND------KIRTFHKSI 130 (225)
Q Consensus 108 ~r~~Fis~m~~LN~------kIR~FQq~i 130 (225)
.|. -++.++-| .+.+|....
T Consensus 507 l~k---~~~lE~sG~g~pvk~ve~~t~~~ 532 (652)
T COG2433 507 LRK---MRKLELSGKGTPVKVVEKLTLEA 532 (652)
T ss_pred HHH---HHhhhhcCCCcceehhhhhhHHH
Confidence 221 11222223 358888663
No 85
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=50.15 E-value=74 Score=30.04 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 44 AENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 44 aanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
||.-=...-|+.+|.++-|+.| ||.|+-.|.+-++.+--++.-||..
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~--------------Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEG--------------LEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556667888888888 9999999999998888888888865
No 86
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=49.88 E-value=58 Score=29.29 Aligned_cols=75 Identities=27% Similarity=0.329 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
=||+..+=+++..+++. +.|-.+.+.+|.- .+-.=+ ++.+.+-..+-..+|+..+...+.+..+.-+++++|+..
T Consensus 113 I~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~---~~~~~~-~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 113 IRRLHTLLRELATLRAN-EKAMKENEALKKQ---LENSSK-LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh---hhcccc-hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888876 4443333333332 221111 333333334444556555555555555555555555544
No 87
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=49.49 E-value=1.5e+02 Score=28.83 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=25.6
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhccc
Q 027302 80 LESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQE 136 (225)
Q Consensus 80 LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~ 136 (225)
|...+..|+.|+-.+-.++..|+... ..-.+.+..|+.++.+.+.-+...-..
T Consensus 307 L~~~vesL~~ELe~~K~el~~lke~e----~~a~~~v~~L~~eL~~~r~eLea~~~~ 359 (522)
T PF05701_consen 307 LRASVESLRSELEKEKEELERLKERE----KEASSEVSSLEAELNKTRSELEAAKAE 359 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHhhHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444432 222344566666666666555444333
No 88
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=49.25 E-value=5.6 Score=40.81 Aligned_cols=74 Identities=24% Similarity=0.308 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHH-------HHHHHHHhhhhhhhhhhhHH
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQA-------LESRISLIHNEISTVGAEVE 99 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~-------LEAris~iQ~EiS~vGs~ld 99 (225)
.+..+.+|+..|+++++.+.+.++.|-|+|-.+|+++.--.-++.-...+..+ ||++|+.|+.++--.-+.+.
T Consensus 603 ~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~ 682 (859)
T PF01576_consen 603 QLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAE 682 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999997655544433333333 55555555555544444433
Q ss_pred H
Q 027302 100 A 100 (225)
Q Consensus 100 a 100 (225)
.
T Consensus 683 ~ 683 (859)
T PF01576_consen 683 A 683 (859)
T ss_dssp -
T ss_pred H
Confidence 3
No 89
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.22 E-value=1.2e+02 Score=28.80 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIE 60 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~E 60 (225)
..++..|+++|..++.++..+++++.+++......+
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999999888888888777766554443
No 90
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=49.04 E-value=2.3e+02 Score=26.55 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=20.7
Q ss_pred hhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhh
Q 027302 90 EISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 90 EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
.|.+.+..+++.|... +++-+.+..|+..|..|+.++.
T Consensus 75 ~~~k~~~si~~q~~~i----~~l~~~i~~l~~~i~~y~~~~~ 112 (301)
T PF06120_consen 75 NIAKAEESIAAQKRAI----EDLQKKIDSLKDQIKNYQQQLA 112 (301)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555443 2333445677777887876543
No 91
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=48.50 E-value=92 Score=33.84 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=58.4
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHH
Q 027302 22 SQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEAL 101 (225)
Q Consensus 22 S~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaL 101 (225)
-+..+.....+.+++.++..++.+..++..+..--..+..+|...+-.+.- .++.|+++|..++.++..+.+++..+
T Consensus 871 ~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~---~~eel~a~L~e~r~rL~~l~~el~~~ 947 (1353)
T TIGR02680 871 RHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGA---MVDEIRARLAETRAALASGGRELPRL 947 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888888888888888877776666666666654443321 27788888888888888888888777
Q ss_pred HHhh
Q 027302 102 KKEQ 105 (225)
Q Consensus 102 K~~~ 105 (225)
....
T Consensus 948 ~~~~ 951 (1353)
T TIGR02680 948 AEAL 951 (1353)
T ss_pred HHHH
Confidence 7654
No 92
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=48.48 E-value=1.4e+02 Score=23.80 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=60.9
Q ss_pred hhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHH
Q 027302 7 KKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISL 86 (225)
Q Consensus 7 qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~ 86 (225)
+..|.+-++...++..+=...+..|+.+++.+..++..+.+..-.++.--..++.-+++..=++.=.-..++...+.-.|
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~ 133 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEH 133 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777777777777766666666666666666555554444455554444333
Q ss_pred hhhhhhhhhhhHHHHHH
Q 027302 87 IHNEISTVGAEVEALKK 103 (225)
Q Consensus 87 iQ~EiS~vGs~ldaLK~ 103 (225)
||-+.--+++.||.
T Consensus 134 ---e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 134 ---ELRKKEREIEKLKE 147 (151)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 66665556666654
No 93
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=47.72 E-value=1.3e+02 Score=23.15 Aligned_cols=74 Identities=22% Similarity=0.330 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHH---HHhccceeeeecchhhH----------------------HHHHHHH
Q 027302 30 GLKKRIEKLRLELEAENFEREEAKQLKETIE---QELKGYEVELALNNTAF----------------------QALESRI 84 (225)
Q Consensus 30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~E---qeL~G~evqlaln~~si----------------------q~LEAri 84 (225)
-|+..++.+.+....-+..+++.+.++++.+ .. .|+++-+.|..... -+++..+
T Consensus 10 ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~ 88 (126)
T TIGR00293 10 ILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAI 88 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHH
Confidence 3445555555555555555555555555442 22 56777775544333 4455555
Q ss_pred HHhhhhhhhhhhhHHHHHHh
Q 027302 85 SLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 85 s~iQ~EiS~vGs~ldaLK~~ 104 (225)
..+..-+..+-..++.|...
T Consensus 89 ~~l~~~~~~l~~~~~~l~~~ 108 (126)
T TIGR00293 89 EFLKKRIEELEKAIEKLQEA 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544
No 94
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=47.55 E-value=45 Score=28.38 Aligned_cols=40 Identities=30% Similarity=0.381 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhc
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELK 64 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~ 64 (225)
|-|+.+|=+||.+|+.+--.++.||-+|.-..|+.-.||.
T Consensus 5 eP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELD 44 (134)
T PF15233_consen 5 EPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELD 44 (134)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999888876
No 95
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=47.06 E-value=3e+02 Score=27.29 Aligned_cols=108 Identities=12% Similarity=0.207 Sum_probs=65.4
Q ss_pred hcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchh-hHHHHH----------HHHHHhhh
Q 027302 21 KSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNT-AFQALE----------SRISLIHN 89 (225)
Q Consensus 21 kS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~-siq~LE----------Aris~iQ~ 89 (225)
|.|-.-.+.+|++-|++++..++.-+.-+-..+-.--.+..++. .++.++. +.++-. +..+.--.
T Consensus 80 k~h~d~~i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (426)
T smart00806 80 KKHIDDEIDTLQNELDEVKQALESQREAIQRLKERQQNSAANIA----RPAASPSPVLASSSSAISLANNPDKLNKEQRA 155 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcccCcc----cccCCCCcccccccccccccCCCcccchhHHH
Confidence 34555568889999998888887655444332222111111111 1111221 111000 00111237
Q ss_pred hhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302 90 EISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 90 EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~e 133 (225)
||..+.-||-.|+.-.......+-..|-.+-.++..|+. ++++
T Consensus 156 el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~-~~~~ 198 (426)
T smart00806 156 ELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS-SSLS 198 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc
Confidence 888889999999999988888899999999999999998 3444
No 96
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=46.68 E-value=1e+02 Score=25.83 Aligned_cols=87 Identities=24% Similarity=0.296 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHhHHHHHHHhc-------cceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhh
Q 027302 35 IEKLRLELEAENFEREEAKQLKETIEQELK-------GYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQES 107 (225)
Q Consensus 35 i~~l~~e~daanaElE~aKr~kE~~EqeL~-------G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~ 107 (225)
+..+...+-....||..+.|.+....+.|. -.+-.+.-....|..|++.+..++.+|.....++.........
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI 148 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555666666666655544433 3334455566777888888888888888888888888888888
Q ss_pred hhhHHHHHHHHhhH
Q 027302 108 LRDGFIVQMFELND 121 (225)
Q Consensus 108 ~r~~Fis~m~~LN~ 121 (225)
..|+.++-=.++|-
T Consensus 149 l~DE~~~L~l~~~~ 162 (194)
T PF08614_consen 149 LQDELQALQLQLNM 162 (194)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888775555543
No 97
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.34 E-value=76 Score=29.35 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=19.0
Q ss_pred ccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 027302 64 KGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALK 102 (225)
Q Consensus 64 ~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK 102 (225)
.++-|--+++...|+.=++.|++++.+...+-.+|+.|-
T Consensus 20 ~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~ 58 (265)
T COG3883 20 FLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLD 58 (265)
T ss_pred hcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555455555555555444444444444443
No 98
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=46.19 E-value=1.1e+02 Score=22.14 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhH-HHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAF-QALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~si-q~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
.+..|+.++..+.+.......++..++.+.+..+.==++-.|-.++....+ ++.+.-+..|.+.+..+-.+++.|+..
T Consensus 6 ~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~ 84 (106)
T PF01920_consen 6 KFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQ 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888877777776663333355555554322 233444444555555555555555554
No 99
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=46.01 E-value=1.3e+02 Score=22.66 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=26.3
Q ss_pred cceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 65 GYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 65 G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
||-|+..+.+ ++..|+.|+..|+.++..+-..++.+...
T Consensus 78 ~~~ve~~~~e-A~~~l~~r~~~l~~~~~~l~~~~~~~~~~ 116 (129)
T cd00890 78 GVYVEKSLEE-AIEFLKKRLETLEKQIEKLEKQLEKLQDQ 116 (129)
T ss_pred CEEEEecHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444 46778888888888877777777666655
No 100
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.99 E-value=3.6e+02 Score=27.87 Aligned_cols=108 Identities=18% Similarity=0.306 Sum_probs=62.8
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHH----------------
Q 027302 22 SQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRIS---------------- 85 (225)
Q Consensus 22 S~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris---------------- 85 (225)
-.+..|...|+++...|+.-+--..+=+..-+--+..-++.|.+-.+++..-+.-|++|-+.++
T Consensus 255 ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dv 334 (581)
T KOG0995|consen 255 EKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDV 334 (581)
T ss_pred hcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3345566666766666666665555555555555555555555555555554444544444433
Q ss_pred --------HhhhhhhhhhhhHHHHHHhhhhhh---hHHH----HHHHHhhHHHHHHHHH
Q 027302 86 --------LIHNEISTVGAEVEALKKEQESLR---DGFI----VQMFELNDKIRTFHKS 129 (225)
Q Consensus 86 --------~iQ~EiS~vGs~ldaLK~~~~~~r---~~Fi----s~m~~LN~kIR~FQq~ 129 (225)
.++.+|-++++++|+|-.+....- .+|| ..+.++|.-||+---.
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888999999877655333 2333 3456777766665433
No 101
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.48 E-value=1.9e+02 Score=24.66 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=22.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETI 59 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~ 59 (225)
++++..|++.++.++........+++.++.-|+..
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 55666677777777777777777766666555443
No 102
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.33 E-value=43 Score=24.64 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHH
Q 027302 77 FQALESRISLIHNEISTVGAEVEAL 101 (225)
Q Consensus 77 iq~LEAris~iQ~EiS~vGs~ldaL 101 (225)
.|.-|.|+..|+.||...--+++.+
T Consensus 34 LqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 34 LQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666555555444
No 103
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.20 E-value=47 Score=29.49 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=50.9
Q ss_pred HhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHH--------HHhHHHHHHHhccceeeeecchhhHHHHHHHHHHh
Q 027302 16 DFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEA--------KQLKETIEQELKGYEVELALNNTAFQALESRISLI 87 (225)
Q Consensus 16 DFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~a--------Kr~kE~~EqeL~G~evqlaln~~siq~LEAris~i 87 (225)
||.+ -.-.+--+|.||+-|.+|-..+..+..+.+.. .-+|+-.||=|+=-+=||.=....-..-..-+..+
T Consensus 87 dfS~-~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v 165 (195)
T PF12761_consen 87 DFSA-TEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSV 165 (195)
T ss_pred CCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHH
Confidence 4544 33345578899999999999999888877762 33455555554432222211100000011234455
Q ss_pred hhhhhhhhhhHHHHHHh
Q 027302 88 HNEISTVGAEVEALKKE 104 (225)
Q Consensus 88 Q~EiS~vGs~ldaLK~~ 104 (225)
.+.|.+|...|+.|...
T Consensus 166 ~~Dl~~ie~QV~~Le~~ 182 (195)
T PF12761_consen 166 REDLDTIEEQVDGLESH 182 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777888888887765
No 104
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=45.15 E-value=4.7e+02 Score=28.95 Aligned_cols=170 Identities=21% Similarity=0.290 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhh
Q 027302 31 LKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRD 110 (225)
Q Consensus 31 Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~ 110 (225)
++..|-+|+.-.-.-..|+-+-.-.+-+++.+|+-.+.+|-=..+-.+-||...|.--+||-++|-+|--=--+-...+.
T Consensus 104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~ 183 (1265)
T KOG0976|consen 104 HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNM 183 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHH
Confidence 45666666666665556666666667778888888887777666777778888888888888888665332222223444
Q ss_pred HHHHHHHHhhH-------HHHHHHHH------hhhhcccCCCc----------------CcccccccccccccCCChhhh
Q 027302 111 GFIVQMFELND-------KIRTFHKS------IAFNLQEDDSF----------------GTAAVSEADHNFSKKGVPEVA 161 (225)
Q Consensus 111 ~Fis~m~~LN~-------kIR~FQq~------i~~el~~~~~~----------------g~ta~teA~~~~s~~~~~~vd 161 (225)
+|.--.-+-|. +..+|..- ++.++.+++.. -.||. --+++.+.+-..|
T Consensus 184 q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~---rk~~s~i~E~d~~ 260 (1265)
T KOG0976|consen 184 EFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPL---RKTCSMIEEQDMD 260 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH---hhhhHHHHHHHHH
Confidence 44433322222 22333221 11222222110 11222 2467777777778
Q ss_pred hhHHHHHHHHHHhhhhhh-----HHhhHHHHHHHHHHHHHHHHHHHHH
Q 027302 162 LKTLEDKIAEVVSQTARE-----EELYQEEEKIQKQVQLELIDLERKV 204 (225)
Q Consensus 162 ~e~i~~~l~dvvSq~~~E-----eeeY~~e~~~~eqv~qELaD~qaK~ 204 (225)
+++..+.|.++.+++..- +|.-+++-+- +.++.||.+++.-|
T Consensus 261 lq~sak~ieE~m~qlk~kns~L~~ElSqkeelV-k~~qeeLd~lkqt~ 307 (1265)
T KOG0976|consen 261 LQASAKEIEEKMRQLKAKNSVLGDELSQKEELV-KELQEELDTLKQTR 307 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999988887664 4444444433 23456666665544
No 105
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=1.1e+02 Score=26.42 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--hhHHHHHHHHHHhhhh
Q 027302 26 RRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--TAFQALESRISLIHNE 90 (225)
Q Consensus 26 rrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--~siq~LEAris~iQ~E 90 (225)
.++..|+..++++...+-.+.||+++-+|--+.--++...|-.+=.+.+ ..|..||.-++++-..
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~ 109 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDD 109 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5788899999999999999999999998887777778888877766666 6788888776664433
No 106
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=44.08 E-value=1.3e+02 Score=31.64 Aligned_cols=54 Identities=28% Similarity=0.343 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 30 GLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
+|-...++|-|+-+.-..|||++|.+|.. ||.+|..+.+||-++-+++..-..+
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~K---------------------lee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLK---------------------LEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567889999999999999999999875 6778888889999988887665443
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=43.90 E-value=3.3e+02 Score=26.88 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=32.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch-hh---HHHHHHHHHHhhhhhhhhhhhH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN-TA---FQALESRISLIHNEISTVGAEV 98 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~-~s---iq~LEAris~iQ~EiS~vGs~l 98 (225)
-.++..|+++|.++..+.+....++.+.+...+.++..+...+-.+.-+- .. .+.|++++..+..+.-.+-..+
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444444444444444444444444432111111111 12 2356666666665555444333
No 108
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=43.47 E-value=34 Score=24.93 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 027302 24 GERRVVGLKKRIEKLRLELEAENFEREEAK 53 (225)
Q Consensus 24 GErrv~~Lkkri~~l~~e~daanaElE~aK 53 (225)
=|.|+.-|.+||+....+...|..+...+|
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388999999998888888777777665543
No 109
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=43.42 E-value=49 Score=24.81 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=29.4
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVG 95 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vG 95 (225)
..-+..||.||+..|+.+. +|+|-.--+.=-..-|+.||.+|...+.=+...+
T Consensus 27 ~~~~~~lk~Klq~ar~~i~------------------~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 27 DTATGSLKHKLQKARAAIR------------------ELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------hCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888777776653 4666322222223556667777666554444433
No 110
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=42.21 E-value=3.1e+02 Score=26.14 Aligned_cols=168 Identities=21% Similarity=0.262 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhh
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQE 106 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~ 106 (225)
+|..--..|..|.++--.-|++||.-|..|+..|.|+.-|.--|| ++|+-.+ +--+.-.|++ ..-.
T Consensus 57 Ti~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLa---aAi~d~d--------qsq~skrdle---lafq 122 (305)
T PF14915_consen 57 TIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLA---AAIQDHD--------QSQTSKRDLE---LAFQ 122 (305)
T ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH---HHHhhHH--------HHHhhHHHHH---HHHH
Confidence 344445567788888888999999999999999999876644432 1222221 1111112222 1112
Q ss_pred hhhhHHHHHHHHhhHHHHHHH---HHhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHHHHHHHhhhhhhHHhh
Q 027302 107 SLRDGFIVQMFELNDKIRTFH---KSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELY 183 (225)
Q Consensus 107 ~~r~~Fis~m~~LN~kIR~FQ---q~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~EeeeY 183 (225)
..||++++-=..||.-|-... ++.+--|+.-.+--.+..++--+.+..-..+|+.++.+-..|...-.|+-.=+.-|
T Consensus 123 r~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~ 202 (305)
T PF14915_consen 123 RARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMY 202 (305)
T ss_pred HHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776667776552111 11111111111100011111112222235677888888888888877775557777
Q ss_pred HHHHHHH-----------H----------HHHHHHHHHHHHHHHHH
Q 027302 184 QEEEKIQ-----------K----------QVQLELIDLERKVSLME 208 (225)
Q Consensus 184 ~~e~~~~-----------e----------qv~qELaD~qaK~sLMe 208 (225)
+.++-.- + =++|+|.|.+.|..-=+
T Consensus 203 qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 203 QNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654221 1 15688888888876555
No 111
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=41.60 E-value=8.7 Score=38.09 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027302 185 EEEKIQKQVQLELIDLERKVSLMEMIAYETGSL 217 (225)
Q Consensus 185 ~e~~~~eqv~qELaD~qaK~sLMe~i~~etk~L 217 (225)
.-....+=|..|...++.|+..|+.+--+...|
T Consensus 278 ~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~l 310 (722)
T PF05557_consen 278 QSQENVELLEEEKRSLQRKLERLEELEEELAEL 310 (722)
T ss_dssp ---------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445567777777777777665555443
No 112
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.59 E-value=3.4e+02 Score=27.04 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhh---hHHHHHHHHhhHHHHH
Q 027302 74 NTAFQALESRISLIHNEISTVGAEVEALKKEQESLR---DGFIVQMFELNDKIRT 125 (225)
Q Consensus 74 ~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r---~~Fis~m~~LN~kIR~ 125 (225)
+.+-++|++-++=+++.|......|+.+-......| .+-|.+|.++|.+|..
T Consensus 132 ~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ 186 (475)
T PRK10361 132 EQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQ 186 (475)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666667777777777777777666555445 3447777888887754
No 113
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=41.52 E-value=80 Score=21.55 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=20.6
Q ss_pred HHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 027302 50 EEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALK 102 (225)
Q Consensus 50 E~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK 102 (225)
++|+|+|+---+...+ ||.++..|..|....-..+..|+
T Consensus 14 ~AA~r~R~rkk~~~~~--------------le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 14 EAARRSRQRKKQREEE--------------LEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667776665554433 55555555555554444444444
No 114
>PRK14158 heat shock protein GrpE; Provisional
Probab=40.98 E-value=1.2e+02 Score=26.50 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--hhHHHHHHHHHH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--TAFQALESRISL 86 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--~siq~LEAris~ 86 (225)
+.++..|+.++.+++-.+-.+.||.++.+|--+.--.+++-|-++=.+.+ ..+..||.-+.+
T Consensus 46 e~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~ 109 (194)
T PRK14158 46 EEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDH 109 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc
Confidence 45566777777888888888999999988776665666666655544444 445566654444
No 115
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.68 E-value=2.5e+02 Score=24.58 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhhhhhHHH
Q 027302 32 KKRIEKLRLELEAENFEREE 51 (225)
Q Consensus 32 kkri~~l~~e~daanaElE~ 51 (225)
+.|+..++.++..+.++|.+
T Consensus 92 ~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 116
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=40.41 E-value=2.4e+02 Score=24.29 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=49.0
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhh
Q 027302 11 LTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNE 90 (225)
Q Consensus 11 lslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~E 90 (225)
|.+|+..-.|--.--.+-...++.+.++..+-..-..-|..|.+-.+.....|..|+ =+-.+.+.+.+|+..++.+
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~----kdK~~L~~~k~rl~~~ek~ 101 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE----KDKQSLQNLKARLKELEKE 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 455555544433322233333333333333333333334444444555555555543 2336777788888888888
Q ss_pred hhhhhhhHHHHHHh
Q 027302 91 ISTVGAEVEALKKE 104 (225)
Q Consensus 91 iS~vGs~ldaLK~~ 104 (225)
+...-.+-+.|...
T Consensus 102 l~~Lk~e~evL~qr 115 (201)
T PF13851_consen 102 LKDLKWEHEVLEQR 115 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877777777654
No 117
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=40.40 E-value=2.4e+02 Score=30.81 Aligned_cols=123 Identities=24% Similarity=0.279 Sum_probs=69.1
Q ss_pred HHHHhhhhhhhhhhhHHHHHHhhhhhh--hHHHHHHHHhh----H-HH-HHHHHHhhhhcccC--CCcCccccccccccc
Q 027302 83 RISLIHNEISTVGAEVEALKKEQESLR--DGFIVQMFELN----D-KI-RTFHKSIAFNLQED--DSFGTAAVSEADHNF 152 (225)
Q Consensus 83 ris~iQ~EiS~vGs~ldaLK~~~~~~r--~~Fis~m~~LN----~-kI-R~FQq~i~~el~~~--~~~g~ta~teA~~~~ 152 (225)
|...|.-|.-..--=.+-|++-....+ .-|+|..+||= + -| +++-|.|.-|++.- -+.|..+ |+
T Consensus 373 rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DP------df 446 (1102)
T KOG1924|consen 373 RLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDP------DF 446 (1102)
T ss_pred HHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCC------Cc
Confidence 333333344433333444554444444 55888877762 2 22 67777777765421 0123322 22
Q ss_pred ccCCChhhhhhHHHHHHHHH-----Hhhhhhh-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027302 153 SKKGVPEVALKTLEDKIAEV-----VSQTARE-EELYQEEEKIQKQVQLELIDLERKVSLMEMIA 211 (225)
Q Consensus 153 s~~~~~~vd~e~i~~~l~dv-----vSq~~~E-eeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~ 211 (225)
.-...-.||...|-|...|. +-|-+.| +..|-+++-++.+.+-||...+.|.-+|++=.
T Consensus 447 ~yr~~l~id~~~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~ 511 (1102)
T KOG1924|consen 447 KYRFRLDIDLTELIDKMVDKAKAEESEQKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEK 511 (1102)
T ss_pred chhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhh
Confidence 21222345666555544432 2233333 66788888899999999999999999988743
No 118
>PRK11546 zraP zinc resistance protein; Provisional
Probab=40.14 E-value=1.4e+02 Score=25.32 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=36.3
Q ss_pred chhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHH
Q 027302 5 DPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRI 84 (225)
Q Consensus 5 d~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAri 84 (225)
+.|.++-+|..+|.++ ...||.++-+..+||.+-- .+ =+ .=+++|
T Consensus 47 EQQa~~q~I~~~f~~~--------------t~~LRqqL~aKr~ELnALl----------~~------~~-----pD~~kI 91 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQ--------------TSALRQQLVSKRYEYNALL----------TA------NP-----PDSSKI 91 (143)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH----------cC------CC-----CCHHHH
Confidence 5678888999999872 3444455555555543210 00 00 114567
Q ss_pred HHhhhhhhhhhhhHHHHHH
Q 027302 85 SLIHNEISTVGAEVEALKK 103 (225)
Q Consensus 85 s~iQ~EiS~vGs~ldaLK~ 103 (225)
..+..||+.+...|+.+..
T Consensus 92 ~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 92 NAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777776666555443
No 119
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.95 E-value=2.5e+02 Score=24.39 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=8.2
Q ss_pred HHHHHHhhhhhh-HHhhHHH
Q 027302 168 KIAEVVSQTARE-EELYQEE 186 (225)
Q Consensus 168 ~l~dvvSq~~~E-eeeY~~e 186 (225)
-....+++.-.+ +.-|+..
T Consensus 177 ~ye~~~~~~~~e~e~~y~~k 196 (312)
T PF00038_consen 177 QYEEIAQKNREELEEWYQSK 196 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhcccc
Confidence 334444333333 5555544
No 120
>PF06931 Adeno_E4_ORF3: Mastadenovirus E4 ORF3 protein; InterPro: IPR009699 This family consists of several Mastadenovirus E4 ORF3 proteins. Early proteins E4 ORF3 and E4 ORF6 have complementary functions during viral infection. Both proteins facilitate efficient viral DNA replication, late protein expression, and prevention of concatenation of viral genomes. A unique function of E4 ORF3 is the reorganisation of nuclear structures known as PML oncogenic domains (PODs). The function of these domains is unclear, but PODs have been implicated in a number of important cellular processes, including transcriptional regulation, apoptosis, transformation, and response to interferon [].
Probab=39.83 E-value=52 Score=27.35 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=48.0
Q ss_pred CCCCchhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHH
Q 027302 1 MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQAL 80 (225)
Q Consensus 1 mag~d~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~L 80 (225)
|+|-|-|-++..+||++-.|.--|- ++..+.=. -|.+=.++-+=+.++.-.---+
T Consensus 16 m~G~~l~~~~~~Ii~~Wk~ENYLGm----------------vq~c~~mi---------ee~~~~af~~lvfl~vRv~~Ll 70 (113)
T PF06931_consen 16 MAGLNLQQQLTQIIRGWKNENYLGM----------------VQDCSMMI---------EEFENNAFALLVFLDVRVEALL 70 (113)
T ss_pred HcCCCHHHHHHHHHHHHhhcchhHH----------------HHHhhHhh---------hccCCCeEEEEEEEEeeHHHHH
Confidence 8999999999999999988765552 11111111 1344557888888888877889
Q ss_pred HHHHHHhhhhh
Q 027302 81 ESRISLIHNEI 91 (225)
Q Consensus 81 EAris~iQ~Ei 91 (225)
||.++||.+-|
T Consensus 71 eAvV~hLeNRi 81 (113)
T PF06931_consen 71 EAVVEHLENRI 81 (113)
T ss_pred HHHHHHhhhhe
Confidence 99999987755
No 121
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=39.46 E-value=3.6e+02 Score=30.87 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhh--hhh-hHHHHHHHHhhHHH
Q 027302 74 NTAFQALESRISLIHNEISTVGAEVEALKKEQE--SLR-DGFIVQMFELNDKI 123 (225)
Q Consensus 74 ~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~--~~r-~~Fis~m~~LN~kI 123 (225)
..+||.--+-|-..|+-|.+|-++..+-...-. ..| .+|--.|.+|--++
T Consensus 1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356676667777777777777777665544321 111 33444455554444
No 122
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=39.41 E-value=2.4e+02 Score=24.02 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=72.0
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeee-cchhhHHHHHHHHHHhhhh
Q 027302 12 TLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELA-LNNTAFQALESRISLIHNE 90 (225)
Q Consensus 12 slIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqla-ln~~siq~LEAris~iQ~E 90 (225)
.=|..|+.+. +.+...+..-+.+++......-..|+.||.--+.+-+++..+..+.. +...-+.-++++....+.+
T Consensus 89 ~~l~~~~~~~---~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~ 165 (236)
T cd07651 89 EKLAAFASSY---TQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSS 165 (236)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHH
Confidence 3455565543 24444455555677777777788888888888888888877766532 2345678889999999999
Q ss_pred hhhhhhhHHHHHHhhhhhhhHHHHHH
Q 027302 91 ISTVGAEVEALKKEQESLRDGFIVQM 116 (225)
Q Consensus 91 iS~vGs~ldaLK~~~~~~r~~Fis~m 116 (225)
+...-.+.......-...++.|+.-|
T Consensus 166 ~~~~~~~Y~~~v~~~~~~~~~~~~~~ 191 (236)
T cd07651 166 INSSRRDYQNAVKALRELNEIWNREW 191 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888887777777777666655
No 123
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.25 E-value=6.1e+02 Score=28.63 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=29.2
Q ss_pred cchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302 72 LNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 72 ln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~e 133 (225)
+.+-|...|+..+...+..+......+..|+.+ +..++..+..|++....-
T Consensus 432 ~~~~SdEeLe~~LenF~aklee~e~qL~elE~k-----------L~~lea~leql~~~~~~l 482 (1486)
T PRK04863 432 LPDLTADNAEDWLEEFQAKEQEATEELLSLEQK-----------LSVAQAAHSQFEQAYQLV 482 (1486)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 344555556666666666665555555555555 455556666666655544
No 124
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=37.87 E-value=4e+02 Score=26.09 Aligned_cols=148 Identities=23% Similarity=0.272 Sum_probs=96.7
Q ss_pred hhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 027302 45 ENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIR 124 (225)
Q Consensus 45 anaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR 124 (225)
.+.-+-..-..=..||..+.||.+- -+-..+..+++.|..+...|..+-.+|+.|+..+...|.. +.+|-.+-|
T Consensus 77 ~~~~~~~ie~~l~~ae~~~~~~~f~--~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~----v~~l~~~y~ 150 (569)
T PRK04778 77 VTNSLPDIEEQLFEAEELNDKFRFR--KAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREE----VEQLKDLYR 150 (569)
T ss_pred HHhhhhhHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4444444445556677888887653 3446677889999999999999999999999988776654 466777778
Q ss_pred HHHHHhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027302 125 TFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKV 204 (225)
Q Consensus 125 ~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~EeeeY~~e~~~~eqv~qELaD~qaK~ 204 (225)
.+++.+.-. .-++|.+.. .... .+..|..+++..+- -.+...|.+-.....++..++.+++.++
T Consensus 151 ~~rk~ll~~---~~~~G~a~~--------~le~---~l~~~e~~f~~f~~--l~~~Gd~~~A~e~l~~l~~~~~~l~~~~ 214 (569)
T PRK04778 151 ELRKSLLAN---RFSFGPALD--------ELEK---QLENLEEEFSQFVE--LTESGDYVEAREILDQLEEELAALEQIM 214 (569)
T ss_pred HHHHHHHhc---CccccchHH--------HHHH---HHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877543 333444221 0011 33344444444331 1236778888889999999999999887
Q ss_pred HHHHHHHHhh
Q 027302 205 SLMEMIAYET 214 (225)
Q Consensus 205 sLMe~i~~et 214 (225)
.-+-.+..+.
T Consensus 215 ~~iP~l~~~~ 224 (569)
T PRK04778 215 EEIPELLKEL 224 (569)
T ss_pred HHHHHHHHHH
Confidence 6664444443
No 125
>PF12828 PXB: PX-associated; InterPro: IPR024555 The function of this domain is not known, but it is almost always found N-terminal to a PX domain (IPR001683 from INTERPRO).
Probab=37.34 E-value=37 Score=28.12 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=25.9
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHHHHHHH
Q 027302 174 SQTAREEELYQEEEKIQKQVQLELIDLERK 203 (225)
Q Consensus 174 Sq~~~EeeeY~~e~~~~eqv~qELaD~qaK 203 (225)
..++..++-|++..+.|-|+..|+..+-.-
T Consensus 7 ~~Ltp~q~HyLkk~L~~~ql~~Ei~~l~~p 36 (137)
T PF12828_consen 7 QSLTPTQEHYLKKELIHLQLYREIEELNDP 36 (137)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 457788999999999999999999887654
No 126
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.10 E-value=66 Score=32.02 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=9.0
Q ss_pred chhHHHHHHHHHHHHHHH
Q 027302 25 ERRVVGLKKRIEKLRLEL 42 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~ 42 (225)
+.+...|.++|+.++.++
T Consensus 75 Q~kasELEKqLaaLrqEl 92 (475)
T PRK13729 75 QVTAAQMQKQYEEIRREL 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555554333
No 127
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=37.06 E-value=68 Score=28.40 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302 107 SLRDGFIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 107 ~~r~~Fis~m~~LN~kIR~FQq~i~~e 133 (225)
..|.-|..-+...|.+||+|=-.|--.
T Consensus 136 ~aR~~YN~av~~yN~~i~~FPs~ivA~ 162 (185)
T COG1704 136 VARRLYNEAVRDYNVKIRSFPSNIVAK 162 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 578899999999999999998766544
No 128
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.06 E-value=6.4e+02 Score=28.21 Aligned_cols=97 Identities=22% Similarity=0.281 Sum_probs=58.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHh-------HHHHHH-------HhccceeeeecchhhHHHHHHHHHHhhhh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQL-------KETIEQ-------ELKGYEVELALNNTAFQALESRISLIHNE 90 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~-------kE~~Eq-------eL~G~evqlaln~~siq~LEAris~iQ~E 90 (225)
+-++..|+.-|-+|.+.+..-+.|.|.+++- |-..|- ++-|..=+=...-.+.|.++..|+..++|
T Consensus 264 ~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~E 343 (1200)
T KOG0964|consen 264 EDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDE 343 (1200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777766666666544 322332 33333333344456677788888888888
Q ss_pred hhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhh
Q 027302 91 ISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAF 132 (225)
Q Consensus 91 iS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~ 132 (225)
.|++-..-..|..+. -.++.+|+..++....
T Consensus 344 L~~I~Pky~~l~~ee-----------~~~~~rl~~l~~~~~~ 374 (1200)
T KOG0964|consen 344 LSKIEPKYNSLVDEE-----------KRLKKRLAKLEQKQRD 374 (1200)
T ss_pred HHHhhhHHHHHHhHH-----------HHHHHHHHHHHHHHHH
Confidence 888877766666654 3345555555554433
No 129
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=36.74 E-value=55 Score=29.09 Aligned_cols=30 Identities=33% Similarity=0.545 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHhhhhhhh-----hhhhHHHHHHh
Q 027302 75 TAFQALESRISLIHNEIST-----VGAEVEALKKE 104 (225)
Q Consensus 75 ~siq~LEAris~iQ~EiS~-----vGs~ldaLK~~ 104 (225)
.-|.-|+..|+.||.+|++ +--++..||.+
T Consensus 112 ~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~E 146 (181)
T PF04645_consen 112 KEIEILRLKISSLQKEINKNKKKDLNEEIESLKSE 146 (181)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 4567799999999999986 22344555544
No 130
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=36.33 E-value=35 Score=33.11 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHH---HHHHhccceeeeec--chhhHHHHHHHHHHhhhhhhhhhhh
Q 027302 23 QGERRVVGLKKRIEKLRLELEAENFEREEAKQLKET---IEQELKGYEVELAL--NNTAFQALESRISLIHNEISTVGAE 97 (225)
Q Consensus 23 ~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~---~EqeL~G~evqlal--n~~siq~LEAris~iQ~EiS~vGs~ 97 (225)
|=-..+.+|+..|+.|+.+++.-...+ +.|+++. +..++..-.+-..- ...+.-+--+..+..+.||..+..|
T Consensus 82 h~d~~~~~l~~~i~~lk~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ev~~LRre 159 (424)
T PF03915_consen 82 HIDSGIGGLSEEIEELKQELDEQQETI--LQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSKSDLKEVQSLRRE 159 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCcchHHHHHHHHHH
Confidence 444567788888888888888877776 2333332 22222211111000 0000001112222247899999999
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcc
Q 027302 98 VEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQ 135 (225)
Q Consensus 98 ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~ 135 (225)
|-.|+.-.......+-..|-.+..+|+.|+. .+++.+
T Consensus 160 LavLRQl~~~~~~~~~~~i~~i~~ki~~~k~-~s~~~~ 196 (424)
T PF03915_consen 160 LAVLRQLYSEFQSEVKESISSIREKIKKVKS-ASTNAS 196 (424)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccc
Confidence 9999999988889999999999999999998 666544
No 131
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=36.00 E-value=5.8e+02 Score=27.44 Aligned_cols=92 Identities=21% Similarity=0.280 Sum_probs=53.0
Q ss_pred HHHhhhhhcccchhHHHHHHHHHHH----HHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhh
Q 027302 14 IRDFASEKSQGERRVVGLKKRIEKL----RLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHN 89 (225)
Q Consensus 14 IRDFa~EkS~GErrv~~Lkkri~~l----~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~ 89 (225)
+.+...+..+-...+..|.+++.++ ..+.+.+++++...+.-=..+++.-..|+ ..+-..+...=.+...+++
T Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye---~~~i~~~~~~~~~l~~~~~ 359 (1201)
T PF12128_consen 283 QPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYE---DADIEQLIARVDQLPEWRN 359 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHhhHHHHH
Confidence 3333444444444455555554444 44556677777777776677777777764 2333333333345557777
Q ss_pred hhhhhhhhHHHHHHhhhhh
Q 027302 90 EISTVGAEVEALKKEQESL 108 (225)
Q Consensus 90 EiS~vGs~ldaLK~~~~~~ 108 (225)
++...-..++.|-.....-
T Consensus 360 ~~~~l~~~~~~Lt~~~~di 378 (1201)
T PF12128_consen 360 ELENLQEQLDLLTSKHQDI 378 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777665533
No 132
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=35.67 E-value=3.6e+02 Score=26.59 Aligned_cols=73 Identities=21% Similarity=0.380 Sum_probs=42.3
Q ss_pred hhHHHHHHhh-hhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChh----hhhhHHHHHHH
Q 027302 96 AEVEALKKEQ-ESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPE----VALKTLEDKIA 170 (225)
Q Consensus 96 s~ldaLK~~~-~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~----vd~e~i~~~l~ 170 (225)
.-.+++--.. ...|..|+...+|| +-|=++=..++..+++..+ ....+. +.|+ .+.+.|..||+
T Consensus 339 ~g~~a~tlLe~~~~R~~fldeL~EL----~aFL~qRl~El~~~~~~~l-----~~~~~~--~ap~~lq~~t~~~i~~ml~ 407 (507)
T PF05600_consen 339 RGDDALTLLENPETRNQFLDELLEL----EAFLKQRLYELSNEESSSL-----SFSQFQ--NAPSILQQQTAESIEEMLS 407 (507)
T ss_pred cCchhhhhcCCHhHHHHHHHHHHHH----HHHHHHHHHHhcccccchH-----HHHHhh--hccHHHHhcCHHHHHHHHH
Confidence 3456666555 57899999999999 4566666666653221111 111222 3344 57788888885
Q ss_pred H---HHhhhhhh
Q 027302 171 E---VVSQTARE 179 (225)
Q Consensus 171 d---vvSq~~~E 179 (225)
. +++++...
T Consensus 408 ~V~~ii~~Lt~~ 419 (507)
T PF05600_consen 408 AVEEIISQLTNP 419 (507)
T ss_pred HHHHHHHHhcCH
Confidence 4 44444433
No 133
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=35.33 E-value=4.3e+02 Score=25.77 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=29.7
Q ss_pred HHHHHhhhhhcccchhHHHHHHHH---HHHHHHHhhhhhhHHH
Q 027302 12 TLIRDFASEKSQGERRVVGLKKRI---EKLRLELEAENFEREE 51 (225)
Q Consensus 12 slIRDFa~EkS~GErrv~~Lkkri---~~l~~e~daanaElE~ 51 (225)
..+..|..+.-+.+..|..|++.+ .+|.+.++.++.++..
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~ 253 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELES 253 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888899999999888 5566777777766654
No 134
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.19 E-value=2.9e+02 Score=25.60 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=6.9
Q ss_pred HHHHHhhhhhcc
Q 027302 12 TLIRDFASEKSQ 23 (225)
Q Consensus 12 slIRDFa~EkS~ 23 (225)
.+|++||-=.|.
T Consensus 120 ~lvK~~aRl~ak 131 (312)
T smart00787 120 QLVKTFARLEAK 131 (312)
T ss_pred HHHHHHHHHHHH
Confidence 456666655554
No 135
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=35.07 E-value=1.6e+02 Score=20.76 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=24.7
Q ss_pred eeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 69 ELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 69 qlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
++......+..|+.+|..++.+|...-.+++.....
T Consensus 46 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~ 81 (123)
T PF02050_consen 46 QLRNYQRYISALEQAIQQQQQELERLEQEVEQAREE 81 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445777778888887777777777777665543
No 136
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.03 E-value=7.1e+02 Score=28.17 Aligned_cols=103 Identities=21% Similarity=0.352 Sum_probs=59.4
Q ss_pred HHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhh
Q 027302 14 IRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEIST 93 (225)
Q Consensus 14 IRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~ 93 (225)
|+...+-.+...|++...-+-|..+..+.+....|+ +...++++|-+.-.+=...-+-.-++-|-.|+.++..
T Consensus 923 i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~-------~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~ 995 (1293)
T KOG0996|consen 923 IAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKEL-------DDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRD 995 (1293)
T ss_pred HHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333445555555555555555544444433 2345556665544444445555556666777788888
Q ss_pred hhhhHHHHHHhhh---hhhhHHHHHHHHhhHHH
Q 027302 94 VGAEVEALKKEQE---SLRDGFIVQMFELNDKI 123 (225)
Q Consensus 94 vGs~ldaLK~~~~---~~r~~Fis~m~~LN~kI 123 (225)
+-++++-++...+ ..|..|-.....+|+++
T Consensus 996 ~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l 1028 (1293)
T KOG0996|consen 996 LKSELENIKKSENELKAERIDIENKLEAINGEL 1028 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 8888877776665 33555767777777765
No 137
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=34.90 E-value=56 Score=29.74 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 26 RRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 26 rrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
+.|.-++.+++.+..++..++..|.+.+.--..++..|...+-++.-...-.+.|+..+...+.-+..+..=+++|.++
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 4455566676666666666666666666655555555555555544444445555555555555555555555555544
No 138
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=34.31 E-value=2.8e+02 Score=23.27 Aligned_cols=78 Identities=28% Similarity=0.342 Sum_probs=45.8
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhh
Q 027302 10 LLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHN 89 (225)
Q Consensus 10 LlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~ 89 (225)
+..-.+.--+++..=+.||-+|.+-|+.++.....+-.+.|.+|+--++.+.++.. +-.....|.-
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~--------------lt~el~~L~~ 73 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEE--------------LTSELNQLEL 73 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 33444444455555566777777777777777777767777777766666665543 4444444445
Q ss_pred hhhhhhhhHHHH
Q 027302 90 EISTVGAEVEAL 101 (225)
Q Consensus 90 EiS~vGs~ldaL 101 (225)
|+.++.|+-+.|
T Consensus 74 EL~~l~sEk~~L 85 (140)
T PF10473_consen 74 ELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 139
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=34.19 E-value=98 Score=24.99 Aligned_cols=28 Identities=32% Similarity=0.588 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHH
Q 027302 74 NTAFQALESRISLIHNEISTVGAEVEAL 101 (225)
Q Consensus 74 ~~siq~LEAris~iQ~EiS~vGs~ldaL 101 (225)
...+..+++++..+=+||...|-.|-.+
T Consensus 49 ~~~~~~~~~~~~~~i~~i~~~Gv~vKd~ 76 (120)
T PF09969_consen 49 EAELEELEARLRELIDEIEELGVEVKDL 76 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcEEeCC
Confidence 3455667888888888888888776554
No 140
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=33.34 E-value=14 Score=36.67 Aligned_cols=81 Identities=26% Similarity=0.384 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhh
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQE 106 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~ 106 (225)
....+|.+|..|+.+++....+.+ +.+...|.++.-.+-++......++.|++++..+.+.....-.+++.++....
T Consensus 62 e~~~~k~~l~~Le~e~~~~~~e~~---~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~ 138 (722)
T PF05557_consen 62 ELIELKAQLNQLEYELEQLKQEHE---RAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELE 138 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777776654 44445667777777788888888999998888777777666666666655544
Q ss_pred hhhh
Q 027302 107 SLRD 110 (225)
Q Consensus 107 ~~r~ 110 (225)
..+.
T Consensus 139 ~~k~ 142 (722)
T PF05557_consen 139 QLKR 142 (722)
T ss_dssp ----
T ss_pred HHHH
Confidence 3333
No 141
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=32.91 E-value=3.2e+02 Score=23.48 Aligned_cols=89 Identities=15% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhh
Q 027302 30 GLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLR 109 (225)
Q Consensus 30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r 109 (225)
..++++..++..++.|=.++.+.++--+..... .-.+.=.+...+...||.+|+..+..+..+..++-.....
T Consensus 35 ~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~--~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~----- 107 (240)
T PF12795_consen 35 KQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ--DAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQ----- 107 (240)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc--ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred hHHHHHHHHhhHHHHHHHHHhh
Q 027302 110 DGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 110 ~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
.-.+++....+|..+.
T Consensus 108 ------l~~~~~~p~~aq~~l~ 123 (240)
T PF12795_consen 108 ------LIEIQTRPERAQQQLS 123 (240)
T ss_pred ------HHHHHccHHHHHHHHH
No 142
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.58 E-value=2.7e+02 Score=22.59 Aligned_cols=33 Identities=27% Similarity=0.533 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhh
Q 027302 77 FQALESRISLIHNEISTVGAEVEALKKEQESLR 109 (225)
Q Consensus 77 iq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r 109 (225)
++.|+..++.+++.++..-++++.++......+
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344556666666666666666666666654444
No 143
>PRK14143 heat shock protein GrpE; Provisional
Probab=32.58 E-value=1.9e+02 Score=26.00 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--hhHHHHHHHHHHh
Q 027302 26 RRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--TAFQALESRISLI 87 (225)
Q Consensus 26 rrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--~siq~LEAris~i 87 (225)
..+..|++.+.+++..+-.+.|+.++.||--+.--.+++.|-++=.+.+ ..+-.||--+.++
T Consensus 74 ~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~ 137 (238)
T PRK14143 74 QELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQL 137 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 3466788888888888888999999988765444445555544444433 3455565444443
No 144
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=32.58 E-value=3.6e+02 Score=23.92 Aligned_cols=50 Identities=22% Similarity=0.332 Sum_probs=26.2
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302 80 LESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 80 LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~e 133 (225)
+.+.+.+++.|+-....+...|+..- +.+.....+|+.-|..|.++|.--
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~----~e~~~~~~~m~~i~~e~Ek~i~~~ 56 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKY----EELHKENQEMRKIMEEYEKTIAQM 56 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 56666777777555555555554442 223333345555555565555443
No 145
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=32.30 E-value=39 Score=26.43 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhh
Q 027302 73 NNTAFQALESRISLIHNEISTVGA 96 (225)
Q Consensus 73 n~~siq~LEAris~iQ~EiS~vGs 96 (225)
.-..||+|+-+||-|+=|.+...+
T Consensus 71 Th~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 71 THEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335799999999999999987654
No 146
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=31.75 E-value=1.1e+02 Score=27.47 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhhhhHHHH
Q 027302 35 IEKLRLELEAENFEREEA 52 (225)
Q Consensus 35 i~~l~~e~daanaElE~a 52 (225)
+..+++.+..|.++++.|
T Consensus 108 l~~~~~~l~~a~~~l~~a 125 (370)
T PRK11578 108 LMELRAQRQQAEAELKLA 125 (370)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444433
No 147
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=31.49 E-value=4.1e+02 Score=25.54 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhHHH
Q 027302 34 RIEKLRLELEAENFEREEAKQLKET 58 (225)
Q Consensus 34 ri~~l~~e~daanaElE~aKr~kE~ 58 (225)
.+.+---+++.||--||.|||++..
T Consensus 109 ql~kyiReLEQaNDdLErakRati~ 133 (333)
T KOG1853|consen 109 QLRKYIRELEQANDDLERAKRATIY 133 (333)
T ss_pred HHHHHHHHHHHhccHHHHhhhhhhh
Confidence 3334445788999999999999653
No 148
>PRK14147 heat shock protein GrpE; Provisional
Probab=30.57 E-value=2.6e+02 Score=23.83 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--hhHHHHHHHHHH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--TAFQALESRISL 86 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--~siq~LEAris~ 86 (225)
+..+..|+.++++++..+-.+.||.++.+|--+.--.++.-|-++=.+.+ ..+-.||.-+.+
T Consensus 24 ~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~ 87 (172)
T PRK14147 24 KAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTA 87 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Confidence 34677889999999888888999999887643333333333333222222 234455544433
No 149
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=30.42 E-value=6.5e+02 Score=26.32 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 027302 24 GERRVVGLKKRIEKLRLELEAENFEREEA 52 (225)
Q Consensus 24 GErrv~~Lkkri~~l~~e~daanaElE~a 52 (225)
...|++.|.+|.+.|+.++.-||.....+
T Consensus 247 aq~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 247 AQQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 46788888888888888888888775554
No 150
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.20 E-value=4.5e+02 Score=24.42 Aligned_cols=49 Identities=24% Similarity=0.433 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHH
Q 027302 79 ALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFH 127 (225)
Q Consensus 79 ~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQ 127 (225)
.+-..+.-.+.+|...++++..|+..-..++..-...=.-|+.+.|--|
T Consensus 63 ~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 63 EIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555544433333333333333333444433
No 151
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=30.14 E-value=2.4e+02 Score=22.25 Aligned_cols=82 Identities=28% Similarity=0.273 Sum_probs=38.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhh--HHHHHHhHHHHHHHhccce-------eeeecchhhHHHHHHHHHHhhhhhhh
Q 027302 23 QGERRVVGLKKRIEKLRLELEAENFE--REEAKQLKETIEQELKGYE-------VELALNNTAFQALESRISLIHNEIST 93 (225)
Q Consensus 23 ~GErrv~~Lkkri~~l~~e~daanaE--lE~aKr~kE~~EqeL~G~e-------vqlaln~~siq~LEAris~iQ~EiS~ 93 (225)
.++|++..|=|++-.+.+..+....- -+....+++..-.+|--++ ..+.+|..-.+..++--..|..+|..
T Consensus 13 ~~dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~ 92 (139)
T PF05615_consen 13 GDDRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQ 92 (139)
T ss_pred cCchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777766665555422111 1233333333333333333 23333333334444444555555555
Q ss_pred hhhhHHHHHHh
Q 027302 94 VGAEVEALKKE 104 (225)
Q Consensus 94 vGs~ldaLK~~ 104 (225)
+-.+...||..
T Consensus 93 ~k~~ie~lk~~ 103 (139)
T PF05615_consen 93 AKKEIEELKEE 103 (139)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 152
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=29.86 E-value=6.9e+02 Score=26.41 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027302 191 KQVQLELIDLERKVSLMEM 209 (225)
Q Consensus 191 eqv~qELaD~qaK~sLMe~ 209 (225)
+..+.|+.++..++.-|..
T Consensus 468 e~~~~e~~~lk~~~~~LQ~ 486 (775)
T PF10174_consen 468 ETYQKELKELKAKLESLQK 486 (775)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5777888888888777764
No 153
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=29.73 E-value=59 Score=24.33 Aligned_cols=44 Identities=34% Similarity=0.421 Sum_probs=32.1
Q ss_pred hhHHHHHHHhh---hhhcccc----hhHHHHHHHHHHHHHHHhhhhhhHHH
Q 027302 8 KHLLTLIRDFA---SEKSQGE----RRVVGLKKRIEKLRLELEAENFEREE 51 (225)
Q Consensus 8 KqLlslIRDFa---~EkS~GE----rrv~~Lkkri~~l~~e~daanaElE~ 51 (225)
..+.++-.-.| +||+..| .....|+.||+.|+.++|....+++.
T Consensus 11 qe~~al~sK~A~Leaek~~~eL~~seeY~eL~~ri~~lr~~ld~~~~~~d~ 61 (71)
T PF08663_consen 11 QEYFALASKRAVLEAEKSEAELEESEEYQELEDRIEELRAELDDTLDEFDD 61 (71)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 44555555444 5777754 35789999999999999998887754
No 154
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.46 E-value=3.1e+02 Score=23.76 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=33.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 027302 180 EELYQEEEKIQKQVQLELIDLERKVSLMEMIAYETGSLQDLTR 222 (225)
Q Consensus 180 eeeY~~e~~~~eqv~qELaD~qaK~sLMe~i~~etk~LQeL~~ 222 (225)
=..|..-....+++++|++.++.....++.+..|...|..|-.
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666778888888888888888888899988887744
No 155
>PF13166 AAA_13: AAA domain
Probab=29.41 E-value=4.9e+02 Score=25.31 Aligned_cols=101 Identities=14% Similarity=0.218 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecc------------hhhHHHHHHHHHHhhhhhhhhhh
Q 027302 29 VGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALN------------NTAFQALESRISLIHNEISTVGA 96 (225)
Q Consensus 29 ~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln------------~~siq~LEAris~iQ~EiS~vGs 96 (225)
..|...|+.+...++..|.....-+..++.+...+.-+.+.-... ...|+.++..+..++.+++..-.
T Consensus 366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 445 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEK 445 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544444444444444444333221111 12233344444444444444444
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHhhHHHHHH-HHHhhhh
Q 027302 97 EVEALKKEQESLRDGFIVQMFELNDKIRTF-HKSIAFN 133 (225)
Q Consensus 97 ~ldaLK~~~~~~r~~Fis~m~~LN~kIR~F-Qq~i~~e 133 (225)
++..|+..... --..+..+|..++.| ...+.++
T Consensus 446 ~i~~l~~~~~~----~~~~~~~iN~~L~~~g~~~~~l~ 479 (712)
T PF13166_consen 446 EIKELEAQLKN----TEPAADRINEELKRLGFSNFSLE 479 (712)
T ss_pred HHHHHHHHHhh----hHHHHHHHHHHHHHhCCCCeEEE
Confidence 44444433211 112346778888888 2333443
No 156
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=29.39 E-value=9.9e+02 Score=28.08 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=37.0
Q ss_pred CchhhhHHHHHHHhhhhhcc--------------cchhHHHHHHHHH-------HHHHHHhhhhhhHHHHHHhHHHHHHH
Q 027302 4 SDPKKHLLTLIRDFASEKSQ--------------GERRVVGLKKRIE-------KLRLELEAENFEREEAKQLKETIEQE 62 (225)
Q Consensus 4 ~d~qKqLlslIRDFa~EkS~--------------GErrv~~Lkkri~-------~l~~e~daanaElE~aKr~kE~~Eqe 62 (225)
.|-.+.|.+.++||-+=|.. -+++..+|+.|++ .++.+++-...+|+...+-+....-+
T Consensus 23 ~d~~~~l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~ 102 (1822)
T KOG4674|consen 23 VDVFKKLPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWE 102 (1822)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 46678899999999843322 3455555555554 45667777777777665555544433
No 157
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.29 E-value=2.9e+02 Score=25.78 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH------HhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHH
Q 027302 27 RVVGLKKRIEKLRLE------LEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEA 100 (225)
Q Consensus 27 rv~~Lkkri~~l~~e------~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~lda 100 (225)
+|.-||.+|+++.-+ .+.+-.|.+..+|.-+..+.||.--+-+|.-.....+-+..||..+-...+..--+--.
T Consensus 167 kV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTR 246 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhHHHHHHHHhhHHHHHHH
Q 027302 101 LKKEQESLRDGFIVQMFELNDKIRTFH 127 (225)
Q Consensus 101 LK~~~~~~r~~Fis~m~~LN~kIR~FQ 127 (225)
|... +--+-.|.++|+
T Consensus 247 l~k~-----------~~~~~sKV~kf~ 262 (269)
T PF05278_consen 247 LSKT-----------IKSIKSKVEKFH 262 (269)
T ss_pred HHHH-----------HHHHHHHHHHhc
No 158
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=28.98 E-value=95 Score=26.51 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 80 LESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 80 LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
|...+.+|..|+|.+--++|++|.+
T Consensus 86 L~qqv~~L~~e~s~~~~E~da~k~k 110 (135)
T KOG4196|consen 86 LQQQVEKLKEENSRLRRELDAYKSK 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888888888889998887
No 159
>COG1422 Predicted membrane protein [Function unknown]
Probab=28.86 E-value=3e+02 Score=24.80 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhh--hHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhh
Q 027302 13 LIRDFASEKSQGERRVVGLKKRIEKLRLELEAENF--EREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNE 90 (225)
Q Consensus 13 lIRDFa~EkS~GErrv~~Lkkri~~l~~e~daana--ElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~E 90 (225)
++-+++..---+.-|+..++++.++.+-+..+|.- -.+.-||+ |.-+-+++..|.|
T Consensus 59 l~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkL----------------------q~~qmem~~~Q~e 116 (201)
T COG1422 59 LYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKL----------------------QEKQMEMMDDQRE 116 (201)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 33333333334667778888887777777666654 33334443 3344566777777
Q ss_pred hhhhh
Q 027302 91 ISTVG 95 (225)
Q Consensus 91 iS~vG 95 (225)
.++.-
T Consensus 117 lmk~q 121 (201)
T COG1422 117 LMKMQ 121 (201)
T ss_pred HHHHh
Confidence 77643
No 160
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=28.76 E-value=4.6e+02 Score=25.78 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=71.2
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeee-ecch-hhHHHHHHHHHHhhhhhhhhhhhHHHH
Q 027302 24 GERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVEL-ALNN-TAFQALESRISLIHNEISTVGAEVEAL 101 (225)
Q Consensus 24 GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evql-aln~-~siq~LEAris~iQ~EiS~vGs~ldaL 101 (225)
||+.|-.|-.|+. +-.+.-|..|++.|+.---.+-+.|-.|+-.- -|++ .+++++=.-|+.||.++...-.+++.|
T Consensus 228 sE~~VN~Ls~rar--~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L 305 (434)
T PRK15178 228 AEQHVNTVSARMQ--KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQL 305 (434)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988754 33455666677666655556666666666544 3444 777778889999999999999999999
Q ss_pred HHh--hhhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302 102 KKE--QESLRDGFIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 102 K~~--~~~~r~~Fis~m~~LN~kIR~FQq~i~~e 133 (225)
... .++ .++-.|..+|.--.+-|..+
T Consensus 306 ~~~~~p~s------PqV~~l~~rI~aLe~QIa~e 333 (434)
T PRK15178 306 MVNGLDQN------PLIPRLSAKIKVLEKQIGEQ 333 (434)
T ss_pred HhhcCCCC------CchhHHHHHHHHHHHHHHHH
Confidence 764 122 34556667776666666654
No 161
>PF15500 Toxin_39: Putative RNase-like toxin
Probab=28.75 E-value=50 Score=26.75 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 027302 182 LYQEEEKIQKQVQLELIDLERKVSL 206 (225)
Q Consensus 182 eY~~e~~~~eqv~qELaD~qaK~sL 206 (225)
+|++++-.+..++++-..+|.||.+
T Consensus 39 eYkkel~a~p~lk~wne~vq~~Rk~ 63 (96)
T PF15500_consen 39 EYKKELAADPALKAWNETVQAKRKL 63 (96)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999876
No 162
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.71 E-value=2e+02 Score=24.15 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
..+|+.+-..+..++..+..-...+.....-....+..++-.+-+|.--...++.|-..+..+|=+.+.+-.-+..|+..
T Consensus 94 ~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 94 AQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555555555554444444444433332222233333333333333333334444444444444
Q ss_pred hh
Q 027302 105 QE 106 (225)
Q Consensus 105 ~~ 106 (225)
+.
T Consensus 174 n~ 175 (194)
T PF08614_consen 174 NR 175 (194)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 163
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.37 E-value=4.8e+02 Score=24.16 Aligned_cols=20 Identities=15% Similarity=0.456 Sum_probs=8.1
Q ss_pred HHHHHhhhhhhhhhhhHHHH
Q 027302 82 SRISLIHNEISTVGAEVEAL 101 (225)
Q Consensus 82 Aris~iQ~EiS~vGs~ldaL 101 (225)
..++.++.+.+.+-+.++..
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~ 244 (312)
T smart00787 225 KKLEELEEELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 164
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=28.31 E-value=1.6e+02 Score=20.93 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=16.5
Q ss_pred HhhhhhcccchhHHHHHHHHHHHHHHHhhhhh
Q 027302 16 DFASEKSQGERRVVGLKKRIEKLRLELEAENF 47 (225)
Q Consensus 16 DFa~EkS~GErrv~~Lkkri~~l~~e~daana 47 (225)
||.+|..+=+.....+.+.|+.+..-+...++
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F 32 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENF 32 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 55555555555555555555555555544433
No 165
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.09 E-value=1.4e+02 Score=20.78 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 77 FQALESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 77 iq~LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
++.||.++..|+.+......+++.|+...
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666666666553
No 166
>PRK11281 hypothetical protein; Provisional
Probab=27.76 E-value=2.1e+02 Score=31.20 Aligned_cols=88 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHh
Q 027302 8 KHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLI 87 (225)
Q Consensus 8 KqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~i 87 (225)
.|.|.--=+|-.+.-.-..+...|++++...-.++..|+.++++-|+.-+.. ..-.+...|...||++++.+
T Consensus 62 ~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~--------~~~~~~~~Sl~qLEq~L~q~ 133 (1113)
T PRK11281 62 QQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE--------TRETLSTLSLRQLESRLAQT 133 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccc--------ccccccccCHHHHHHHHHHH
Q ss_pred hhhhhhhhhhHHHHHH
Q 027302 88 HNEISTVGAEVEALKK 103 (225)
Q Consensus 88 Q~EiS~vGs~ldaLK~ 103 (225)
+.+...+..++..+..
T Consensus 134 ~~~Lq~~Q~~La~~Ns 149 (1113)
T PRK11281 134 LDQLQNAQNDLAEYNS 149 (1113)
T ss_pred HHHHHHHHHHHHHHHH
No 167
>PRK01156 chromosome segregation protein; Provisional
Probab=27.67 E-value=6.6e+02 Score=25.47 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 027302 35 IEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKK 103 (225)
Q Consensus 35 i~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~ 103 (225)
+..+..++.....++++.++--+..+++++...- ....+..++.+|..|..++...-..++-++.
T Consensus 213 ~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l~~----~~~~~~~~e~~i~ele~~l~el~~~~~el~~ 277 (895)
T PRK01156 213 HSITLKEIERLSIEYNNAMDDYNNLKSALNELSS----LEDMKNRYESEIKTAESDLSMELEKNNYYKE 277 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333211 1234444555555555544444444444333
No 168
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=27.52 E-value=4.1e+02 Score=23.01 Aligned_cols=104 Identities=20% Similarity=0.354 Sum_probs=63.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhh-HHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 027302 24 GERRVVGLKKRIEKLRLELEAENFE-REEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALK 102 (225)
Q Consensus 24 GErrv~~Lkkri~~l~~e~daanaE-lE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK 102 (225)
=+.|+..++..|..|...+.+.--. .|..+.+....++.+++ |.+..-+-+..+...++.=++.....+..|.
T Consensus 32 ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~------~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~ 105 (247)
T PF06705_consen 32 EEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINN------MQERVENQISEKQEQLQSRLDSLNDRIEALE 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999988777765443 34445666677777765 2222222333455555555666667777776
Q ss_pred HhhhhhhhHHHHHHHHhhHH----HHHHHHHhhhh
Q 027302 103 KEQESLRDGFIVQMFELNDK----IRTFHKSIAFN 133 (225)
Q Consensus 103 ~~~~~~r~~Fis~m~~LN~k----IR~FQq~i~~e 133 (225)
......+......+.++|.. |-.|+..+.-+
T Consensus 106 ~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~E 140 (247)
T PF06705_consen 106 EEIQEEKEERPQDIEELNQELVRELNELQEAFENE 140 (247)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555543 35555555544
No 169
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=27.51 E-value=55 Score=25.96 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 80 LESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 80 LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
||..+-.++.+||.+-.+++.++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (204)
T cd01878 4 LETDRRLIRERIAKLRRELEKVKKQR 29 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 67777888888888888888888773
No 170
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.37 E-value=1.8e+02 Score=21.29 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 79 ALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 79 ~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
.++..|+-++.|++.++.+++.++..
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555556666666666655544
No 171
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=27.24 E-value=4e+02 Score=22.81 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=11.0
Q ss_pred chhhhHHHHHHHhhhh
Q 027302 5 DPKKHLLTLIRDFASE 20 (225)
Q Consensus 5 d~qKqLlslIRDFa~E 20 (225)
||.+-|=-+|||.-..
T Consensus 24 DP~~~l~q~irem~~~ 39 (219)
T TIGR02977 24 DPEKMIRLIIQEMEDT 39 (219)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6777777777776543
No 172
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.79 E-value=2.7e+02 Score=20.79 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhh
Q 027302 75 TAFQALESRISLIHNEISTVGAEVEALKKEQESLRD 110 (225)
Q Consensus 75 ~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~ 110 (225)
.+|..|.-.|..|+.+-+...++-+.|+.....++.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555556555554443
No 173
>PRK14139 heat shock protein GrpE; Provisional
Probab=26.30 E-value=3.3e+02 Score=23.71 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--hhHHHHHHHH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--TAFQALESRI 84 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--~siq~LEAri 84 (225)
+..+..|++++.+++..+-.+.||+++.+|--+.--.+++.|-++=.+.+ ..+..||.-+
T Consensus 38 ~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl 99 (185)
T PRK14139 38 EAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAAL 99 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 44678889999999999999999999998765555556666555544443 3455555433
No 174
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=26.23 E-value=9.1e+02 Score=26.61 Aligned_cols=167 Identities=20% Similarity=0.184 Sum_probs=91.0
Q ss_pred hhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHH---H
Q 027302 8 KHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESR---I 84 (225)
Q Consensus 8 KqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAr---i 84 (225)
-+...+.|.-+..+.+=++-...-+.|+.-.+..+++-..++.+++|.++-+-.|-.--.-+++.-.++-+-+|.- +
T Consensus 333 ~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ 412 (980)
T KOG0980|consen 333 LQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLV 412 (980)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777777777777777788888888888888888888876544222111111233333343344422 2
Q ss_pred HHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHh---hhhcccCCCcCcccccccccccccCCChhhh
Q 027302 85 SLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSI---AFNLQEDDSFGTAAVSEADHNFSKKGVPEVA 161 (225)
Q Consensus 85 s~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i---~~el~~~~~~g~ta~teA~~~~s~~~~~~vd 161 (225)
..+-+.++..-.-.+.||.+...+|.. =|.-.|+|-+++ .+. . .... |
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~-------h~~lL~K~~di~kQle~~--------~-------~s~~-------~ 463 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQE-------HADLLRKYDDIQKQLESA--------E-------QSID-------D 463 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--------H-------HhHH-------H
Confidence 444444455555555566553332221 122234443332 221 0 0000 3
Q ss_pred hhHHHHHHHHHHhhhhhh----HHhhHHHHHHHHHHHHHHHHHHHH
Q 027302 162 LKTLEDKIAEVVSQTARE----EELYQEEEKIQKQVQLELIDLERK 203 (225)
Q Consensus 162 ~e~i~~~l~dvvSq~~~E----eeeY~~e~~~~eqv~qELaD~qaK 203 (225)
.+-...-|.+.+-.+..+ +--|....+.++++++||+-++.+
T Consensus 464 ~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e 509 (980)
T KOG0980|consen 464 VEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIE 509 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555 335777778888888888776544
No 175
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=26.21 E-value=1e+02 Score=32.41 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=32.9
Q ss_pred HHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 49 REEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 49 lE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
+++-||+++..-.||.- ||++-..||.||+.+..-.++||+.
T Consensus 81 ~~e~~RI~~sVs~EL~e--------------le~krqel~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 81 LREQKRILASVSLELTE--------------LEVKRQELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77889999998888876 7777777777777777777777765
No 176
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=26.14 E-value=1.3e+02 Score=23.05 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHH
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQ 61 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~Eq 61 (225)
-|..|-.||.-|+++.+.-.||+-.-+-.|.+||-
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~kK~~srsAAea 60 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAKKKASRSAAEA 60 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 46779999999999999999998887777777763
No 177
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=26.10 E-value=1e+02 Score=27.93 Aligned_cols=43 Identities=37% Similarity=0.390 Sum_probs=33.8
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhcc
Q 027302 23 QGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKG 65 (225)
Q Consensus 23 ~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G 65 (225)
++||||..|-+-++++.-.+..+.-+-..++.--..+=++|.+
T Consensus 162 ~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~~ 204 (205)
T KOG1003|consen 162 FAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELEN 204 (205)
T ss_pred HHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5899999999999999988888877776776665556566554
No 178
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=25.94 E-value=2.3e+02 Score=24.73 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
+.+|+++|.+|-+.++--..++ --+++...|++.| -++.|+-.|-.+...+++|+.|+--|+...
T Consensus 81 lerLe~~iKdl~~lye~Vs~d~---Npf~s~~~qes~~----------~veel~eqV~el~~i~emv~~d~~~l~g~~ 145 (157)
T COG3352 81 LERLEENIKDLVSLYELVSRDF---NPFMSKTPQESRG----------IVEELEEQVNELKMIVEMVIKDLRELYGVP 145 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---hhHHhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHhccchhhcCCC
Confidence 5677777777777776655543 3456667777766 357788889999999999999998888765
No 179
>PRK14155 heat shock protein GrpE; Provisional
Probab=25.81 E-value=3.1e+02 Score=24.23 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=41.5
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--hhHHHHHHHHHHh
Q 027302 24 GERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--TAFQALESRISLI 87 (225)
Q Consensus 24 GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--~siq~LEAris~i 87 (225)
.+..+..|++.+.+++..+-.+.||.|+.||--+.--.+.+-|-++=.+.+ ..+-.||--+.++
T Consensus 18 l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~ 83 (208)
T PRK14155 18 AAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAAS 83 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcc
Confidence 345677788888888888889999999987765544445555544433333 3445555444443
No 180
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.75 E-value=3.6e+02 Score=29.99 Aligned_cols=75 Identities=23% Similarity=0.342 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhH
Q 027302 32 KKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDG 111 (225)
Q Consensus 32 kkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~ 111 (225)
.+|+.++..++..+...++++.+--|..+++..+ |...+..++.|+++.-+.+..+...- ..
T Consensus 786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~--------------l~lE~e~l~~e~~~~k~~l~~~~~~~----~~ 847 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEESSKELEKRENEYER--------------LQLEHEELEKEISSLKQQLEQLEKQI----SS 847 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 3567777777777777777776666666666555 44555555555555544444444332 33
Q ss_pred HHHHHHHhhHHHH
Q 027302 112 FIVQMFELNDKIR 124 (225)
Q Consensus 112 Fis~m~~LN~kIR 124 (225)
|.+....|-++|+
T Consensus 848 l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 848 LKSELGNLEAKVD 860 (1174)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 181
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=25.58 E-value=5.8e+02 Score=24.18 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCCh
Q 027302 79 ALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVP 158 (225)
Q Consensus 79 ~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~ 158 (225)
.||..+.+|..|.+..-++-+.+-.+.--+-...+.++..-|.+|..++.-++-. . ..+..
T Consensus 171 ~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k----~----------Ee~~r----- 231 (306)
T PF04849_consen 171 SLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARK----T----------EENRR----- 231 (306)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH----H----------HHHHH-----
Confidence 4555555555555555554444444444445667888888999888777665543 1 00000
Q ss_pred hhhhhHHHHHHHHHH------hhhhhhHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027302 159 EVALKTLEDKIAEVV------SQTAREEELYQEE----EKIQKQVQLELIDLERKVSLMEMIAYETG 215 (225)
Q Consensus 159 ~vd~e~i~~~l~dvv------Sq~~~EeeeY~~e----~~~~eqv~qELaD~qaK~sLMe~i~~etk 215 (225)
--+-|..+++++| -++..|-|+-+.- .-.|.+++-||.|++.|-+=+.++..|+.
T Consensus 232 --QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 232 --QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233444555444 3444444443332 45688899999999999987777776654
No 182
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=25.57 E-value=4.8e+02 Score=23.14 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAK 53 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aK 53 (225)
||.--.|..||..++.+...|+.+|..+.
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e 32 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESE 32 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666666666666665544
No 183
>PRK10869 recombination and repair protein; Provisional
Probab=25.54 E-value=4.8e+02 Score=25.71 Aligned_cols=62 Identities=23% Similarity=0.151 Sum_probs=45.7
Q ss_pred hhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhh
Q 027302 45 ENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQE 106 (225)
Q Consensus 45 anaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~ 106 (225)
....|+.+.-.=+.+-.+|..|-=.+.+++.-...+|.|+..|+.=-.+-|..++.+-....
T Consensus 266 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~ 327 (553)
T PRK10869 266 VLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQ 327 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44445555555566667777777778999999999999999998887888876666655443
No 184
>PHA03332 membrane glycoprotein; Provisional
Probab=25.37 E-value=4.3e+02 Score=29.69 Aligned_cols=53 Identities=9% Similarity=0.276 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302 74 NTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 74 ~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~e 133 (225)
..+|+.+-++|+++++=|.+.|.-+.-|-..- =.+..+-|+||-..+..|...
T Consensus 897 ksaIg~tNaAV~~lsDai~klGnti~kisatl-------~~nI~avNgRIs~Led~VN~r 949 (1328)
T PHA03332 897 ASKIGGLNARVDKTSDVITKLGDTIAKISATL-------DNNIRAVNGRVSDLEDQVNLR 949 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-------HhhHHHhcccHHHHHHHHHHH
Confidence 47899999999999999999999988776552 234566677776655555444
No 185
>COG5283 Phage-related tail protein [Function unknown]
Probab=25.16 E-value=4.9e+02 Score=29.18 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=64.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHh-------hhhhhhhhhhHHHHHHhhhh
Q 027302 35 IEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLI-------HNEISTVGAEVEALKKEQES 107 (225)
Q Consensus 35 i~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~i-------Q~EiS~vGs~ldaLK~~~~~ 107 (225)
++..+.++++-|++.-.+-+.+..+--.+.++.-|+++....||.+.+.||.+ .+..-.-|..+...+.....
T Consensus 87 t~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~g 166 (1213)
T COG5283 87 TQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVG 166 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhh
Confidence 33344444444555555555555556667788888888899999999888765 44566788999999999999
Q ss_pred hhhHHHHHHHHhhH
Q 027302 108 LRDGFIVQMFELND 121 (225)
Q Consensus 108 ~r~~Fis~m~~LN~ 121 (225)
.|..|-.+-..||.
T Consensus 167 l~esf~~q~~aln~ 180 (1213)
T COG5283 167 LRESFGRQTEALNK 180 (1213)
T ss_pred HhHHHHHHHHHHHH
Confidence 99999999999994
No 186
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=25.15 E-value=1.3e+02 Score=22.59 Aligned_cols=38 Identities=39% Similarity=0.475 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccce
Q 027302 30 GLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYE 67 (225)
Q Consensus 30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~e 67 (225)
.|+.||++|++..+.-+.-+|..|.-.+..--.|+-|+
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~e 39 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYE 39 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999988888888777666666554
No 187
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.03 E-value=2.5e+02 Score=20.68 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhH
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLK 56 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~k 56 (225)
-|..|..+++.|.+++.+..+++..||.--
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999998888888887776543
No 188
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=24.89 E-value=91 Score=19.44 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027302 28 VVGLKKRIEKLRLELEA 44 (225)
Q Consensus 28 v~~Lkkri~~l~~e~da 44 (225)
|..||.||.+|..+++.
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56678888888777764
No 189
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.52 E-value=5.6e+02 Score=23.55 Aligned_cols=41 Identities=34% Similarity=0.400 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhcc
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKG 65 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G 65 (225)
..-+..+...+..+..+-..+..||++..+-++...+++.-
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777777777777777766666666544
No 190
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=24.46 E-value=56 Score=31.02 Aligned_cols=37 Identities=35% Similarity=0.335 Sum_probs=30.9
Q ss_pred hhhhHHHHHHhHHHHHHHh--ccceeeeecchhhHHHHHHHHHH
Q 027302 45 ENFEREEAKQLKETIEQEL--KGYEVELALNNTAFQALESRISL 86 (225)
Q Consensus 45 anaElE~aKr~kE~~EqeL--~G~evqlaln~~siq~LEAris~ 86 (225)
-|.||++.+++-+.|..=| .| -|..-|+++||-||-.
T Consensus 216 VNdEL~~L~~~L~~a~~~L~~gG-----Rl~VIsFHSLEDRiVK 254 (314)
T COG0275 216 VNDELEELEEALEAALDLLKPGG-----RLAVISFHSLEDRIVK 254 (314)
T ss_pred ehhHHHHHHHHHHHHHHhhCCCc-----EEEEEEecchHHHHHH
Confidence 4889999999999999988 45 5667799999988854
No 191
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=24.33 E-value=2.9e+02 Score=24.59 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=30.4
Q ss_pred hhhhhHHhhHHHHH----HHHHHHHHHHHHHHH-------------HHHHHHHHHhhccccc
Q 027302 175 QTAREEELYQEEEK----IQKQVQLELIDLERK-------------VSLMEMIAYETGSLQD 219 (225)
Q Consensus 175 q~~~EeeeY~~e~~----~~eqv~qELaD~qaK-------------~sLMe~i~~etk~LQe 219 (225)
.+...+..|++|-+ .-++...++--+++| .+.|+.|...-+.||.
T Consensus 109 ~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~ 170 (223)
T cd07605 109 VINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEA 170 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 34445556666655 667888888888888 4457777766666554
No 192
>PRK10869 recombination and repair protein; Provisional
Probab=24.33 E-value=6.9e+02 Score=24.60 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=63.5
Q ss_pred HHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhh
Q 027302 14 IRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEIST 93 (225)
Q Consensus 14 IRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~ 93 (225)
+|++...-+--+.|+..+-.||..++.-.---...++..-..++.++++|.-. .=.+..++.|++.+..+.++...
T Consensus 284 l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L----~~~e~~l~~Le~e~~~l~~~l~~ 359 (553)
T PRK10869 284 LRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQL----DDQEDDLETLALAVEKHHQQALE 359 (553)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445666777777777777766666667777777788888887641 22335677777777777777777
Q ss_pred hhhhHHHHHHhhh-hhhhHHHHHHHHhhH
Q 027302 94 VGAEVEALKKEQE-SLRDGFIVQMFELND 121 (225)
Q Consensus 94 vGs~ldaLK~~~~-~~r~~Fis~m~~LN~ 121 (225)
.+..|-....... .+.......+-.||-
T Consensus 360 ~A~~LS~~R~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 360 TAQKLHQSRQRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7766665554422 222333344444444
No 193
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=24.29 E-value=4.5e+02 Score=22.46 Aligned_cols=105 Identities=20% Similarity=0.268 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeee--------ecchhhHHHHHHHHHHhhhhhhhhhh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVEL--------ALNNTAFQALESRISLIHNEISTVGA 96 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evql--------aln~~siq~LEAris~iQ~EiS~vGs 96 (225)
.|+-..|+.+|..++.+++.+-+++.+.-.--+...+.|.++.-.| +|.-.-+.+++.=.+++++++...-.
T Consensus 14 ~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~ 93 (158)
T PF09486_consen 14 RRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEA 93 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888888888888888877776677777776654332 22334455677778888888888888
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302 97 EVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 97 ~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~e 133 (225)
.+.+|......-.+ .+-.++..|-.-+-.|++|
T Consensus 94 ~~a~l~~~l~~~~~----~ia~~~raIarn~a~id~~ 126 (158)
T PF09486_consen 94 ELAALRQALRAAED----EIAATRRAIARNDARIDVC 126 (158)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHH
Confidence 88888877543332 2333444444444444443
No 194
>PF08180 BAGE: B melanoma antigen family; InterPro: IPR012530 This family consists of the B melanoma antigen (BAGE) peptides. The BAGE gene encodes a human tumour antigen that is recognised by a cytolytic T lymphocyte. BAGE genes are expressed in melanomas, bladder and lung carcinomas and in a few tumours of other histological types [].
Probab=24.06 E-value=32 Score=22.52 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHH
Q 027302 75 TAFQALESRISL 86 (225)
Q Consensus 75 ~siq~LEAris~ 86 (225)
+|.|+|||+++.
T Consensus 10 aSaqaLeAkl~~ 21 (28)
T PF08180_consen 10 ASAQALEAKLSK 21 (28)
T ss_pred HHHHHHHhhhch
Confidence 399999999876
No 195
>PRK14145 heat shock protein GrpE; Provisional
Probab=23.86 E-value=3.8e+02 Score=23.63 Aligned_cols=55 Identities=13% Similarity=0.098 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--hhHHHHH
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--TAFQALE 81 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--~siq~LE 81 (225)
.+..|++++.++...+-.+.||.++.||--+.--.++.-|-++=.+.+ ..+..||
T Consensus 53 ~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLe 109 (196)
T PRK14145 53 KLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFE 109 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 355667777777777778899999988754444444444443333333 3444455
No 196
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.77 E-value=3.1e+02 Score=25.17 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=13.8
Q ss_pred HhccceeeeecchhhHHHHHHHHHHhhhh
Q 027302 62 ELKGYEVELALNNTAFQALESRISLIHNE 90 (225)
Q Consensus 62 eL~G~evqlaln~~siq~LEAris~iQ~E 90 (225)
+.+.+..++.--....++|++++.+.+++
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555554443
No 197
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=23.55 E-value=8.3e+02 Score=25.23 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=40.6
Q ss_pred hhHHHHHHHhhhhhccc-chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhc
Q 027302 8 KHLLTLIRDFASEKSQG-ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELK 64 (225)
Q Consensus 8 KqLlslIRDFa~EkS~G-Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~ 64 (225)
..+.+ +.||+.-++.. +.-+..+...|..++.-.+.++.+++.+.-.+...+..++
T Consensus 164 ~~~~~-~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 164 ENSLS-LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred hhhHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 34445 66677665553 6667777888888888889999988887777777776666
No 198
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=23.46 E-value=2.4e+02 Score=18.97 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=35.4
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhh-------hhhhHHHHHHHHhhHHHHHHHHHhh
Q 027302 73 NNTAFQALESRISLIHNEISTVGAEVEALKKEQE-------SLRDGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 73 n~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~-------~~r~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
+...++.+-.....++.+|...+..++.|...+. ...+..-..+..||.+-..|...+.
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVE 97 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666666666666666554443 3456666777777877777766554
No 199
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=23.30 E-value=1.4e+02 Score=26.90 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=27.3
Q ss_pred hhhhhhHHHHHHhhhhhhhHH------------HHHHHHhhHHH--HHHHHHhhhhc
Q 027302 92 STVGAEVEALKKEQESLRDGF------------IVQMFELNDKI--RTFHKSIAFNL 134 (225)
Q Consensus 92 S~vGs~ldaLK~~~~~~r~~F------------is~m~~LN~kI--R~FQq~i~~el 134 (225)
|++|--+..+|...-..--|| |.-++|+|+|. |.|--+..+++
T Consensus 56 sKLgkt~vitk~tp~sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm~ver 112 (193)
T KOG4727|consen 56 SKLGKTVVITKSTPRSQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSMRVER 112 (193)
T ss_pred hhccceeEeccCCcccccCceeeeecceeehhhHHHHHHhccHHHHHHHhhhhcchh
Confidence 666666666665543333333 45568999998 77776666663
No 200
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=23.25 E-value=2.1e+02 Score=26.27 Aligned_cols=72 Identities=25% Similarity=0.286 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHH
Q 027302 6 PKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRIS 85 (225)
Q Consensus 6 ~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris 85 (225)
+=++|..+|+.... ..-++..-.++=.+-||-++ |-||++-+++=+.+..=|+-.- -|..-|+++||-||-
T Consensus 175 tt~~L~~~i~~~~~---~~~~~~hpatr~FQAlRI~V---N~El~~L~~~L~~~~~~L~~gG---rl~visfHSlEDriV 245 (296)
T PRK00050 175 TTGELAEIIKSAVP---PRRKGIHPATRTFQALRIEV---NDELEELERALEAALDLLKPGG---RLAVISFHSLEDRIV 245 (296)
T ss_pred CHHHHHHHHHHHcC---ccCCCCCchHHHHHHHHHHH---HhhHHHHHHHHHHHHHHhcCCC---EEEEEecCcHHHHHH
Confidence 33555566655533 01112233444455555544 8899999999888887774221 366678999998875
Q ss_pred H
Q 027302 86 L 86 (225)
Q Consensus 86 ~ 86 (225)
.
T Consensus 246 K 246 (296)
T PRK00050 246 K 246 (296)
T ss_pred H
Confidence 4
No 201
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.17 E-value=4.1e+02 Score=21.57 Aligned_cols=58 Identities=21% Similarity=0.389 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhh-----hHHHHHHHHhhHHHHHHHHHhh
Q 027302 74 NTAFQALESRISLIHNEISTVGAEVEALKKEQESLR-----DGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 74 ~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r-----~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
+..+..|.+.|..|++++.....++-.|...-..++ .+....+-+|-.+|.+-+..+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665555544333 4566666666666666555544
No 202
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=23.14 E-value=1.2e+02 Score=23.13 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=21.7
Q ss_pred cchhhHHHHHHHHHHhhhhhhhhhhhHH
Q 027302 72 LNNTAFQALESRISLIHNEISTVGAEVE 99 (225)
Q Consensus 72 ln~~siq~LEAris~iQ~EiS~vGs~ld 99 (225)
|.--|.--|+.||..||+||...-.++-
T Consensus 22 LsllsV~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 22 LSLLSVAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445777899999999999987665553
No 203
>smart00338 BRLZ basic region leucin zipper.
Probab=23.10 E-value=1.3e+02 Score=21.00 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 77 FQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 77 iq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
++.|++.++.|+.+|+..-.++..||..
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3448888888888888888888888764
No 204
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.04 E-value=2.6e+02 Score=21.81 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHH
Q 027302 77 FQALESRISLIHNEISTVGAEVE 99 (225)
Q Consensus 77 iq~LEAris~iQ~EiS~vGs~ld 99 (225)
++.|+-+|+.+.-++..+...++
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333333333333333333333
No 205
>PRK01156 chromosome segregation protein; Provisional
Probab=22.97 E-value=8e+02 Score=24.87 Aligned_cols=26 Identities=8% Similarity=0.233 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHH
Q 027302 77 FQALESRISLIHNEISTVGAEVEALK 102 (225)
Q Consensus 77 iq~LEAris~iQ~EiS~vGs~ldaLK 102 (225)
+..|++++..+..++.....+++.|+
T Consensus 690 l~~l~~~~~~l~~~i~~l~~~~~~l~ 715 (895)
T PRK01156 690 LDDAKANRARLESTIEILRTRINELS 715 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33344444444444444444444444
No 206
>PRK04406 hypothetical protein; Provisional
Probab=22.92 E-value=3.3e+02 Score=20.40 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhhhh
Q 027302 77 FQALESRISLIHNE 90 (225)
Q Consensus 77 iq~LEAris~iQ~E 90 (225)
|..+|+||..|+.-
T Consensus 6 ~~~le~Ri~~LE~~ 19 (75)
T PRK04406 6 IEQLEERINDLECQ 19 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 207
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=22.82 E-value=5.3e+02 Score=22.74 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
-+...+|.++..|..+|++.+-+..||+-...++.||.- |-+ -.-++.|-.+..+++=+++=...+..|..+
T Consensus 115 ~i~k~RKkLe~rRLdyD~~ksk~~kak~~~~~~eeElr~-----Ae~-kfees~E~a~~~M~~i~~~e~e~~~~L~~l 186 (215)
T cd07593 115 EYHSARKKLESRRLAYDAALTKSQKAKKEDSRLEEELRR-----AKA-KYEESSEDVEARMVAIKESEADQYRDLTDL 186 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 346678999999999999999999998877667777654 111 223444555555554333334444444443
No 208
>PRK14149 heat shock protein GrpE; Provisional
Probab=22.68 E-value=4.8e+02 Score=22.90 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--hhHHHHHHHHHH
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--TAFQALESRISL 86 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--~siq~LEAris~ 86 (225)
++..|+..+.+++..+-.+.||+|+.||--+.--.++.-|-++=.+.+ ..+-.||--+.+
T Consensus 44 ~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~ 105 (191)
T PRK14149 44 IKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKS 105 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc
Confidence 578899999999999999999999998754444444444444433333 344555543433
No 209
>PRK14140 heat shock protein GrpE; Provisional
Probab=22.51 E-value=4.3e+02 Score=23.12 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=39.1
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--hhHHHHHH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--TAFQALES 82 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--~siq~LEA 82 (225)
+..+..|+++++++...+-.+.|++++.||--+.--.+.+.|-++=.+.+ ..+..|+-
T Consensus 43 ~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLer 102 (191)
T PRK14140 43 QAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFER 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999988999999999987765555555666554433333 34444543
No 210
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.44 E-value=4.2e+02 Score=23.63 Aligned_cols=60 Identities=7% Similarity=0.211 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--hhHHHHHHHH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--TAFQALESRI 84 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--~siq~LEAri 84 (225)
+.++..|++++++++..+-.+.||.++.||--+.--+++.-|-++=.+.+ ..+..||--+
T Consensus 58 ~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL 119 (208)
T PRK14154 58 EGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGL 119 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 34677888899999888999999999988665544455555544433333 3444455333
No 211
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.33 E-value=3.6e+02 Score=25.21 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=52.4
Q ss_pred HHhccceeeeecch----hhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302 61 QELKGYEVELALNN----TAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 61 qeL~G~evqlaln~----~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~e 133 (225)
..+ |....+.++. .-+..|+.++..++.+|......++.-+ +...-+.+.-.|+..+..+|.++++.+...
T Consensus 225 ~~f-~d~a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~ 299 (406)
T PF02388_consen 225 DAF-GDKAKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP-KKKNKLKELEEQLASLEKRIEEAEELIAEY 299 (406)
T ss_dssp HHC-CCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc-CCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344 4446776664 5677778888888888888877777666 445566788899999999999999987654
No 212
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=22.22 E-value=9.8e+02 Score=25.61 Aligned_cols=52 Identities=27% Similarity=0.417 Sum_probs=35.8
Q ss_pred HHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhh--------hHHHHHHhHHHHHHHhcc
Q 027302 13 LIRDFASEKSQGERRVVGLKKRIEKLRLELEAENF--------EREEAKQLKETIEQELKG 65 (225)
Q Consensus 13 lIRDFa~EkS~GErrv~~Lkkri~~l~~e~daana--------ElE~aKr~kE~~EqeL~G 65 (225)
|=++|-.|-|..=- -.|||.|++-||-++.-||+ =.|.+.++|+-..|-|+-
T Consensus 467 Lk~E~d~e~S~A~~-~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~e 526 (762)
T PLN03229 467 LKKEIDLEYTEAVI-AMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSR 526 (762)
T ss_pred HHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhc
Confidence 33466555554322 24799999999999999998 334577787777777665
No 213
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.20 E-value=1.1e+03 Score=26.38 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHH--HHHHHhhhhhhhhhhhHHHHHHhhhhhhh
Q 027302 33 KRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALE--SRISLIHNEISTVGAEVEALKKEQESLRD 110 (225)
Q Consensus 33 kri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LE--Aris~iQ~EiS~vGs~ldaLK~~~~~~r~ 110 (225)
.....++..+..-.-+|+.++-....+++...-++-++.-+-.|--+.| .|.+.|-.||+..--.+.+|-...-. +.
T Consensus 734 ~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~-~~ 812 (1200)
T KOG0964|consen 734 GEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERID-IE 812 (1200)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HH
Confidence 3333444444444455555555555555555555544444433333333 35566666666666666655544322 11
Q ss_pred HHHHH-HHHhhHHHHHHHHHhhhhcccCCCcC
Q 027302 111 GFIVQ-MFELNDKIRTFHKSIAFNLQEDDSFG 141 (225)
Q Consensus 111 ~Fis~-m~~LN~kIR~FQq~i~~el~~~~~~g 141 (225)
.-+.. =..||.+.+.=-..+-.++.+.+.++
T Consensus 813 ~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~ 844 (1200)
T KOG0964|consen 813 TRKTALEANLNTKLYKRVNELEQEIGDLNDSS 844 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhhccccc
Confidence 12211 14566665433333444555555444
No 214
>PF14282 FlxA: FlxA-like protein
Probab=22.19 E-value=3.8e+02 Score=20.85 Aligned_cols=57 Identities=14% Similarity=0.278 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhh--HHH-HHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302 74 NTAFQALESRISLIHNEISTVGAE--VEA-LKKEQESLRDGFIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 74 ~~siq~LEAris~iQ~EiS~vGs~--lda-LK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~e 133 (225)
+.-|..|+.+|..|+++|..|..+ +++ -|. .-+...-.++..|...|.+-|.-..-.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~---~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQ---QQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999884 111 111 234555667777888886655544433
No 215
>PTZ00464 SNF-7-like protein; Provisional
Probab=21.59 E-value=5.6e+02 Score=22.57 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHH-----------------------Hhhh-----hhhhHHHHHHHHhhHHHHHH
Q 027302 75 TAFQALESRISLIHNEISTVGAEVEALK-----------------------KEQE-----SLRDGFIVQMFELNDKIRTF 126 (225)
Q Consensus 75 ~siq~LEAris~iQ~EiS~vGs~ldaLK-----------------------~~~~-----~~r~~Fis~m~~LN~kIR~F 126 (225)
.+|..|+.|+..|+.-|.++..++...| .+.. ....++..++.+++..|..=
T Consensus 18 d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a 97 (211)
T PTZ00464 18 DASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESV 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666555544443 2221 12255677777777777444
Q ss_pred HHHhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHHHHHHHhhhhhhHHh-------hH-HHHHHHHHHHHHHH
Q 027302 127 HKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEEL-------YQ-EEEKIQKQVQLELI 198 (225)
Q Consensus 127 Qq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~Eeee-------Y~-~e~~~~eqv~qELa 198 (225)
+-...+--+= ..|. ...+.-...|+++.+.++++++--+++..+|- |- .+..+-+.|-.||.
T Consensus 98 ~~~~~vv~am--k~g~--------kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe 167 (211)
T PTZ00464 98 KDTKVQVDAM--KQAA--------KTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELD 167 (211)
T ss_pred HHHHHHHHHH--HHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 3333221000 0111 11122223457777777777766665554321 21 12357788999999
Q ss_pred HHHHHHH
Q 027302 199 DLERKVS 205 (225)
Q Consensus 199 D~qaK~s 205 (225)
.++..+.
T Consensus 168 ~Le~e~~ 174 (211)
T PTZ00464 168 ALDFDME 174 (211)
T ss_pred HHHHHHh
Confidence 9998754
No 216
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=21.53 E-value=1.5e+02 Score=28.54 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhhh-hHHHHHHhhhhhh-hHHHHHHHHh
Q 027302 75 TAFQALESRISLIHNEISTVGA-EVEALKKEQESLR-DGFIVQMFEL 119 (225)
Q Consensus 75 ~siq~LEAris~iQ~EiS~vGs-~ldaLK~~~~~~r-~~Fis~m~~L 119 (225)
.=|..||++|..||.||-.+-+ +++.|-......| .+|...+.+|
T Consensus 144 ~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~er~~~i~~la~~L 190 (478)
T PF11855_consen 144 RRIAELEREIAEIDAEIDRLEAGDVPVLDDTQARERARQILQLAREL 190 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467799999999999987632 5566655555555 3344444443
No 217
>PF12186 AcylCoA_dehyd_C: Acyl-CoA dehydrogenase C terminal; InterPro: IPR020964 This entry represents the C-terminal alpha helical domain of some bacterial Acyl-CoA dehydrogenases. It is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM. There is a conserved ARRL sequence motif. ; PDB: 2OKU_A.
Probab=21.22 E-value=1.6e+02 Score=24.28 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=29.3
Q ss_pred hHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhH
Q 027302 9 HLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFER 49 (225)
Q Consensus 9 qLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaEl 49 (225)
.-|.+||+|.+.--.|| +..||.|+.++....++|-.-+
T Consensus 4 tYl~~i~E~~~~~~~~e--l~~l~~rl~~m~~~yeeav~~V 42 (114)
T PF12186_consen 4 TYLAIIREYEQAEVSPE--LQPLKERLKKMTEKYEEAVAKV 42 (114)
T ss_dssp HHHHHHHTGGGS---GG--GHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcccCHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999988887777 8999999999998887765443
No 218
>PRK14141 heat shock protein GrpE; Provisional
Probab=21.05 E-value=4.3e+02 Score=23.50 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--hhHHHHHHHHHHh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--TAFQALESRISLI 87 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--~siq~LEAris~i 87 (225)
+..+..|+..+++++..+-.+.||+++.+|--+.--.+++-|-++=.+.+ ..+-.||--+.++
T Consensus 37 ~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~ 101 (209)
T PRK14141 37 PDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAI 101 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhcc
Confidence 35678899999999999999999999998765555555555544433333 3455555444443
No 219
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=20.46 E-value=7.2e+02 Score=23.33 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHhhh
Q 027302 79 ALESRISLIHNEISTVGAEVEALKKEQE 106 (225)
Q Consensus 79 ~LEAris~iQ~EiS~vGs~ldaLK~~~~ 106 (225)
.+.+++..++..|.....++..++....
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666655544
No 220
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.39 E-value=3.7e+02 Score=21.70 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEI 91 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~Ei 91 (225)
||.+....+.|+.|+.+++..-+.++... ..|+.||+.+..+..++
T Consensus 33 E~qL~~~~~~l~lLq~e~~~~e~~le~d~---------------------~~L~~Le~~~~~~~~e~ 78 (160)
T PF13094_consen 33 ERQLAANLHQLELLQEEIEKEEAALERDY---------------------EYLQELEKNAKALERER 78 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 56666677777777777776666655433 34667777776654443
No 221
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=20.36 E-value=34 Score=35.34 Aligned_cols=104 Identities=26% Similarity=0.355 Sum_probs=0.0
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHhhhhhh-HHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhh
Q 027302 19 SEKSQGERRVVGLKKRIEKLRLELEAENFE-REEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAE 97 (225)
Q Consensus 19 ~EkS~GErrv~~Lkkri~~l~~e~daanaE-lE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ 97 (225)
..++.=++.++.+..-|..++.-++..... ++..--+|......|..-+-++--....+..||.....|+.|+.-+-++
T Consensus 285 e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~e 364 (859)
T PF01576_consen 285 EAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSE 364 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444666666666677777767665444 2222233334555666666666677788888999999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q 027302 98 VEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFN 133 (225)
Q Consensus 98 ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~e 133 (225)
|+...... -.|..+.|+|-+.+.-.
T Consensus 365 Le~~~~~~-----------~~LeKKqr~fDk~l~e~ 389 (859)
T PF01576_consen 365 LEKAQAAA-----------AELEKKQRKFDKQLAEW 389 (859)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHH-----------HHHHHHHHhHHHHHHHH
Confidence 98877663 45666778887665543
No 222
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=20.29 E-value=3.3e+02 Score=21.10 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=23.3
Q ss_pred CChhhhhhHHHHH--HHHHHhhhhhh--HHhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Q 027302 156 GVPEVALKTLEDK--IAEVVSQTARE--EELYQEEEKIQKQVQLELID-----------LERKVSLMEMIAY 212 (225)
Q Consensus 156 ~~~~vd~e~i~~~--l~dvvSq~~~E--eeeY~~e~~~~eqv~qELaD-----------~qaK~sLMe~i~~ 212 (225)
|.|.|+.++++.. |++...+..+| ++.=..+.-+...|-+.|++ +.+||++++.+-.
T Consensus 9 gAPkvs~EAv~~E~eLd~~l~~rv~ei~~~~~~~~~~~l~~V~~~L~~e~ip~LPPGGGl~sKr~~Ie~vy~ 80 (81)
T PF07830_consen 9 GAPKVSEEAVKKEAELDKYLEQRVEEIIEKSSEEENPDLVYVMRTLASEDIPGLPPGGGLASKRSVIEAVYN 80 (81)
T ss_dssp TS----HHHHHHHHHHHHHHHHHHHHHT----------HHHHHHHHHHTT-SS--TTTTCGGGHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhccCCCCcCCcCHHHHHHHHHHHhc
Confidence 6788888888653 44433333333 11001112222344555553 4567777776643
No 223
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=20.13 E-value=6.4e+02 Score=22.60 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=62.8
Q ss_pred eecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccc
Q 027302 70 LALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEAD 149 (225)
Q Consensus 70 laln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~ 149 (225)
+.|++.++..|=.+-+.---+...+-|+++-++.. ..-+| |+-|++--.++|++-+
T Consensus 56 vti~Edtf~nll~~a~k~~~~a~~~Kse~~~~r~~---L~l~F----------I~sf~~Y~~leL~s~~----------- 111 (181)
T PF04645_consen 56 VTISEDTFNNLLLQAFKSNAEARNAKSELEMERSN---LELSF----------IDSFNQYKNLELKSIK----------- 111 (181)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HhhHH----------HHHHHHhhhhhHHHHH-----------
Confidence 56666665555444444334445555666655544 22244 5889999888876422
Q ss_pred cccccCCChhhhhhHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027302 150 HNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVSLMEM 209 (225)
Q Consensus 150 ~~~s~~~~~~vd~e~i~~~l~dvvSq~~~EeeeY~~e~~~~eqv~qELaD~qaK~sLMe~ 209 (225)
. +.+.|...|+...+.+.++...-.. .+++.+.-||.|+-+++++-+|
T Consensus 112 -------~---ei~~L~~kI~~L~~~in~~~k~~~n--~~i~slk~EL~d~iKe~e~~em 159 (181)
T PF04645_consen 112 -------K---EIEILRLKISSLQKEINKNKKKDLN--EEIESLKSELNDLIKEREIREM 159 (181)
T ss_pred -------H---HHHHHHHHHHHHHHHhhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHH
Confidence 1 4556666666666666665332111 1256677899999999888665
No 224
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=20.02 E-value=35 Score=32.38 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=0.0
Q ss_pred CCCCchh--hhHHHHHHHhhhh
Q 027302 1 MEGSDPK--KHLLTLIRDFASE 20 (225)
Q Consensus 1 mag~d~q--KqLlslIRDFa~E 20 (225)
|||--|+ +.+..||=-+++-
T Consensus 1 m~gLsp~QRREVV~LILslTss 22 (326)
T PF04582_consen 1 MAGLSPSQRREVVGLILSLTSS 22 (326)
T ss_dssp ----------------------
T ss_pred CCCCCHHHHHHHHHhhhcccCC
Confidence 5555443 3455666555543
Done!