Query 027302
Match_columns 225
No_of_seqs 17 out of 19
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 12:53:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v71_A Nuclear distribution pr 92.3 2.6 8.8E-05 35.7 12.3 92 28-129 12-103 (189)
2 3u1c_A Tropomyosin alpha-1 cha 92.2 2.7 9.4E-05 31.5 11.2 90 28-125 4-97 (101)
3 3u59_A Tropomyosin beta chain; 91.5 3.3 0.00011 30.8 11.2 91 28-125 4-97 (101)
4 3na7_A HP0958; flagellar bioge 84.6 16 0.00056 30.4 12.8 21 28-48 34-54 (256)
5 1ic2_A Tropomyosin alpha chain 82.3 7.3 0.00025 27.9 7.6 63 30-99 3-65 (81)
6 1i84_S Smooth muscle myosin he 81.6 2.4 8.3E-05 42.5 6.5 40 23-62 854-893 (1184)
7 3u1c_A Tropomyosin alpha-1 cha 80.2 9.4 0.00032 28.5 7.9 69 15-90 33-101 (101)
8 3na7_A HP0958; flagellar bioge 79.0 27 0.00091 29.1 17.3 69 28-96 20-88 (256)
9 3ghg_A Fibrinogen alpha chain; 76.8 19 0.00066 35.0 10.8 141 30-189 61-207 (562)
10 3u59_A Tropomyosin beta chain; 76.2 13 0.00045 27.5 7.6 69 14-89 32-100 (101)
11 3iv1_A Tumor susceptibility ge 72.2 15 0.0005 27.4 6.9 58 31-105 12-69 (78)
12 1deq_A Fibrinogen (alpha chain 71.0 56 0.0019 30.6 12.0 71 27-104 68-142 (390)
13 2jee_A YIIU; FTSZ, septum, coi 67.5 29 0.001 26.0 7.7 55 29-104 23-77 (81)
14 3ol1_A Vimentin; structural ge 65.1 18 0.00063 27.6 6.4 26 25-50 19-44 (119)
15 4ioe_A Secreted protein ESXB; 63.8 20 0.0007 24.2 5.9 50 82-131 23-73 (93)
16 2v66_B Nuclear distribution pr 63.5 51 0.0017 25.7 9.7 25 80-104 33-57 (111)
17 3swk_A Vimentin; cytoskeleton, 63.1 27 0.00093 25.5 6.8 40 53-92 41-80 (86)
18 2v71_A Nuclear distribution pr 60.4 65 0.0022 27.1 9.5 62 26-104 49-110 (189)
19 3cve_A Homer protein homolog 1 58.5 50 0.0017 24.1 7.4 57 76-132 8-67 (72)
20 2vs0_A Virulence factor ESXA; 57.6 39 0.0013 22.8 6.4 54 78-131 16-70 (97)
21 1go4_E MAD1 (mitotic arrest de 57.2 29 0.00099 26.8 6.3 63 27-92 13-85 (100)
22 3zbh_A ESXA; unknown function, 56.7 43 0.0015 22.6 6.7 51 81-131 22-73 (99)
23 3cvf_A Homer-3, homer protein 56.6 54 0.0018 24.3 7.4 58 75-132 13-73 (79)
24 3o0z_A RHO-associated protein 55.7 89 0.003 26.0 11.9 62 77-138 92-160 (168)
25 3oja_B Anopheles plasmodium-re 55.7 1.1E+02 0.0038 27.1 11.7 22 84-105 451-472 (597)
26 2zqm_A Prefoldin beta subunit 55.4 55 0.0019 23.5 10.9 91 1-104 1-99 (117)
27 3gwk_C SAG1039, putative uncha 55.0 43 0.0015 23.0 6.4 46 86-131 26-72 (98)
28 4dk0_A Putative MACA; alpha-ha 52.6 23 0.00077 29.5 5.4 22 80-101 127-148 (369)
29 3oja_B Anopheles plasmodium-re 51.9 78 0.0027 28.1 9.0 26 78-103 526-551 (597)
30 1l8d_A DNA double-strand break 51.9 64 0.0022 23.2 8.9 74 29-104 13-93 (112)
31 2dfs_A Myosin-5A; myosin-V, in 49.5 94 0.0032 31.6 10.2 22 79-100 981-1002(1080)
32 3tnu_B Keratin, type II cytosk 49.5 47 0.0016 25.3 6.3 19 27-45 37-55 (129)
33 1hjb_A Ccaat/enhancer binding 48.4 14 0.00049 27.6 3.2 37 77-113 45-81 (87)
34 2b9c_A Striated-muscle alpha t 48.0 66 0.0022 25.7 7.2 39 67-105 86-124 (147)
35 2efr_A General control protein 47.1 1.1E+02 0.0039 24.8 15.5 115 69-208 29-146 (155)
36 2xa6_A KH domain-containing\,R 46.1 18 0.00063 24.4 3.1 24 105-128 17-40 (41)
37 2dfs_A Myosin-5A; myosin-V, in 45.7 2.6E+02 0.0088 28.4 13.8 13 167-179 1019-1031(1080)
38 3fav_B ESAT-6, 6 kDa early sec 44.8 71 0.0024 21.7 6.2 55 76-130 13-68 (94)
39 3tnu_A Keratin, type I cytoske 44.7 49 0.0017 25.3 5.8 18 28-45 40-57 (131)
40 3azd_A Short alpha-tropomyosin 44.6 16 0.00056 23.4 2.6 31 24-54 2-32 (37)
41 3fpp_A Macrolide-specific effl 44.0 21 0.00071 29.5 3.8 24 30-53 73-96 (341)
42 4i0x_B ESAT-6-like protein MAB 44.0 83 0.0028 22.3 7.3 55 76-130 19-76 (103)
43 3mq7_A Bone marrow stromal ant 43.1 53 0.0018 26.4 5.9 47 11-57 56-102 (121)
44 3fx7_A Putative uncharacterize 42.7 43 0.0015 25.6 5.1 53 76-128 14-66 (94)
45 2a3d_A Protein (de novo three- 42.3 20 0.00067 26.4 3.0 48 61-111 19-66 (73)
46 3trt_A Vimentin; cytoskeleton, 40.2 42 0.0014 23.1 4.4 15 30-44 6-20 (77)
47 3a7p_A Autophagy protein 16; c 40.2 76 0.0026 26.2 6.6 42 8-49 64-112 (152)
48 4abx_A DNA repair protein RECN 38.9 1.4E+02 0.0047 23.4 8.3 50 56-105 103-152 (175)
49 1fxk_A Prefoldin; archaeal pro 38.2 1E+02 0.0035 21.7 10.2 77 28-104 10-94 (107)
50 3vkg_A Dynein heavy chain, cyt 37.8 98 0.0033 35.5 8.9 20 34-53 2015-2034(3245)
51 1ic2_A Tropomyosin alpha chain 36.8 92 0.0031 22.0 5.8 41 20-60 35-75 (81)
52 2v66_B Nuclear distribution pr 36.0 1.1E+02 0.0036 23.9 6.5 44 81-124 2-45 (111)
53 2yy0_A C-MYC-binding protein; 34.5 51 0.0017 22.4 4.0 26 189-214 20-45 (53)
54 1gu4_A CAAT/enhancer binding p 33.7 72 0.0025 23.3 4.9 48 50-104 25-72 (78)
55 1jcd_A Major outer membrane li 33.5 45 0.0015 23.0 3.6 29 76-104 12-40 (52)
56 3hnw_A Uncharacterized protein 33.2 1.5E+02 0.0052 23.3 7.1 12 80-91 115-126 (138)
57 1wt6_A Myotonin-protein kinase 33.1 1.4E+02 0.0047 22.5 6.5 42 86-127 28-72 (81)
58 3fpp_A Macrolide-specific effl 33.0 1.8E+02 0.0063 23.8 7.9 27 27-53 77-103 (341)
59 1jnm_A Proto-oncogene C-JUN; B 32.4 85 0.0029 21.2 4.9 23 80-102 34-56 (62)
60 2odv_A Plectin 1, HD1; plakin 30.8 1.6E+02 0.0053 24.8 7.2 54 77-130 167-220 (235)
61 4dk0_A Putative MACA; alpha-ha 29.9 54 0.0018 27.2 4.2 17 35-51 79-95 (369)
62 3sjb_C Golgi to ER traffic pro 29.6 1.2E+02 0.0039 23.3 5.6 49 7-55 29-78 (93)
63 3mud_A DNA repair protein XRCC 29.6 61 0.0021 27.2 4.4 42 72-120 132-173 (175)
64 3c9i_A Tail needle protein GP2 29.5 88 0.003 27.6 5.6 66 32-104 83-148 (242)
65 2z5i_A TM, general control pro 28.1 73 0.0025 21.5 3.9 35 24-61 10-44 (52)
66 4djb_A E4-ORF3; adenovirus pro 28.0 46 0.0016 27.1 3.3 66 1-91 33-98 (130)
67 3vkg_A Dynein heavy chain, cyt 27.7 7.7E+02 0.026 28.6 16.4 54 161-214 2029-2086(3245)
68 3tka_A Ribosomal RNA small sub 25.8 78 0.0027 28.8 4.8 71 6-86 213-284 (347)
69 2ke4_A CDC42-interacting prote 25.7 1.6E+02 0.0054 22.1 5.8 34 25-58 14-47 (98)
70 3cve_A Homer protein homolog 1 25.6 72 0.0024 23.3 3.7 25 25-49 20-44 (72)
71 2f1m_A Acriflavine resistance 25.4 2.6E+02 0.0087 22.2 8.4 27 31-57 58-84 (277)
72 3m0a_A TNF receptor-associated 25.3 1.6E+02 0.0054 19.8 6.7 21 72-92 44-64 (66)
73 3ajw_A Flagellar FLIJ protein; 24.9 2E+02 0.007 20.9 11.1 95 26-121 19-113 (150)
74 2dgc_A Protein (GCN4); basic d 24.8 1.2E+02 0.0042 20.9 4.6 42 49-104 18-59 (63)
75 2pnv_A Small conductance calci 24.4 52 0.0018 21.9 2.5 34 11-44 8-41 (43)
76 2oqq_A Transcription factor HY 24.0 80 0.0027 21.3 3.4 14 80-93 22-35 (42)
77 1dh3_A Transcription factor CR 23.9 1.3E+02 0.0043 20.3 4.5 26 78-103 25-50 (55)
78 2efr_A General control protein 23.5 3E+02 0.01 22.3 10.6 64 63-126 86-152 (155)
79 1l8d_A DNA double-strand break 22.7 94 0.0032 22.3 3.9 39 26-64 64-102 (112)
80 3fav_A ESAT-6-like protein ESX 22.7 1.9E+02 0.0066 19.9 5.7 51 80-130 19-70 (101)
81 1hci_A Alpha-actinin 2; triple 22.5 3.6E+02 0.012 22.9 10.5 57 75-131 399-462 (476)
82 1zme_C Proline utilization tra 22.4 65 0.0022 21.0 2.7 27 72-98 41-67 (70)
83 3cvf_A Homer-3, homer protein 22.4 88 0.003 23.1 3.7 24 25-48 26-49 (79)
84 2er8_A Regulatory protein Leu3 22.4 46 0.0016 22.0 2.0 22 75-96 49-70 (72)
85 1gd2_E Transcription factor PA 22.3 53 0.0018 23.6 2.4 25 80-104 34-58 (70)
86 3mud_A DNA repair protein XRCC 22.2 1.7E+02 0.0058 24.5 5.8 36 23-61 132-167 (175)
87 2ke4_A CDC42-interacting prote 20.8 2.7E+02 0.0092 20.8 7.7 63 32-104 14-77 (98)
88 1uuj_A Platelet-activating fac 20.8 62 0.0021 24.4 2.6 26 27-52 59-84 (88)
89 2w83_C C-JUN-amino-terminal ki 20.6 1.6E+02 0.0055 22.0 4.8 35 30-64 34-68 (77)
90 3lay_A Zinc resistance-associa 20.6 3.5E+02 0.012 22.1 7.3 21 71-91 109-129 (175)
91 2p7n_A Pathogenicity island 1 20.4 1.8E+02 0.006 27.5 6.1 104 93-204 101-221 (407)
92 1gd2_E Transcription factor PA 20.1 1.1E+02 0.0037 21.9 3.7 49 52-100 20-68 (70)
93 1ik9_A DNA repair protein XRCC 20.1 3.2E+02 0.011 22.8 7.1 62 75-136 132-204 (213)
No 1
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.34 E-value=2.6 Score=35.66 Aligned_cols=92 Identities=21% Similarity=0.143 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhh
Q 027302 28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQES 107 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~ 107 (225)
+.-.|.+...+...++.+..|+.+=.-.-.-.|.+|- ..+..+|.+++.|+..+...+.+++.+|.+-..
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE----------~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELE----------AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777655444444455552 356669999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhHHHHHHHHH
Q 027302 108 LRDGFIVQMFELNDKIRTFHKS 129 (225)
Q Consensus 108 ~r~~Fis~m~~LN~kIR~FQq~ 129 (225)
...++.+++-.|...|..++.+
T Consensus 82 ~~~e~~~~~~~Lq~el~~l~~~ 103 (189)
T 2v71_A 82 QYAQSYKQVSVLEDDLSQTRAI 103 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888877555544
No 2
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.21 E-value=2.7 Score=31.47 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhh
Q 027302 28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQES 107 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~ 107 (225)
+-.+|+.++-++.+.|.|....+.+..-...+++... =.+.-|.+|.-+|+.+.+|+-.+=..|...+..-..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~-------~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSK-------QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999998888887776666544444444332 234455667777777777777776666555443222
Q ss_pred hhhHHHH----HHHHhhHHHHH
Q 027302 108 LRDGFIV----QMFELNDKIRT 125 (225)
Q Consensus 108 ~r~~Fis----~m~~LN~kIR~ 125 (225)
. ..-.+ .+..||.||.-
T Consensus 77 ~-ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 77 A-EENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHH
Confidence 2 22233 88999999864
No 3
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.51 E-value=3.3 Score=30.75 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhh
Q 027302 28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQES 107 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~ 107 (225)
+-.+|+.+.-++.+.|.|....+.+..-...+++... =.+..|.+|.-+|..+++++-.+-..+...+..-..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~-------~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCK-------QLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889988888888887776665544444444332 244566778888888888888887777766654332
Q ss_pred ---hhhHHHHHHHHhhHHHHH
Q 027302 108 ---LRDGFIVQMFELNDKIRT 125 (225)
Q Consensus 108 ---~r~~Fis~m~~LN~kIR~ 125 (225)
.+..-=+.+..||.||+-
T Consensus 77 ~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 77 AEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 223444589999999864
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.63 E-value=16 Score=30.39 Aligned_cols=21 Identities=10% Similarity=-0.160 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 027302 28 VVGLKKRIEKLRLELEAENFE 48 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaE 48 (225)
|..|...+..++..+.+++.+
T Consensus 34 l~~le~~~~~l~~~~~~~~~~ 54 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEE 54 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 5
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.25 E-value=7.3 Score=27.86 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHH
Q 027302 30 GLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVE 99 (225)
Q Consensus 30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ld 99 (225)
.+|+++.-++.+.|.|...++.+..--+.++.... =.+..|.+|.-+|..+++++-.+-..|.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~-------~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSK-------QLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888777776655555554432 2234455677777777777665554443
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=81.59 E-value=2.4 Score=42.55 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=24.3
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHH
Q 027302 23 QGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQE 62 (225)
Q Consensus 23 ~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~Eqe 62 (225)
.+++.+..|+++|.+++..+.....++.+...-.+..+++
T Consensus 854 ~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e 893 (1184)
T 1i84_S 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE 893 (1184)
T ss_dssp THHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777666665555444443333333
No 7
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=80.15 E-value=9.4 Score=28.53 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhh
Q 027302 15 RDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNE 90 (225)
Q Consensus 15 RDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~E 90 (225)
++.-....+.|.-|..|.+||.-+..++|.+...|..|+..-+.++.-. .-+++-+.+|--||.+|.+|
T Consensus 33 k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~-------~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 33 KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENA-------AKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHccC
Confidence 3334445667888999999999999999988888888777666555443 22334556677777777653
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.02 E-value=27 Score=29.08 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhh
Q 027302 28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGA 96 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs 96 (225)
+..|+.++..+..+++....++...+..-+.+..++...+-++.=.+.-|..+.++|...+.-...|.+
T Consensus 20 i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~ 88 (256)
T 3na7_A 20 IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS 88 (256)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 334444444444445444444444444444444444444444444556666666776666666655544
No 9
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.77 E-value=19 Score=35.05 Aligned_cols=141 Identities=13% Similarity=0.182 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhH----HHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 30 GLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAF----QALESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~si----q~LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
+|++||.+|+.+|+.-..---.+-..-......|++...+..=|+..+ .-||-+|..|+.+|...=+-+.+|+...
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL 140 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777765432222233333445556666555544333332 2588999999999987778888888774
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccccccccccccCCChhhhhhHHHHHHHHHHhhhh--hhHHhh
Q 027302 106 ESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAVSEADHNFSKKGVPEVALKTLEDKIAEVVSQTA--REEELY 183 (225)
Q Consensus 106 ~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~--~EeeeY 183 (225)
.. +--+|.+.---|+.- -..|-|.-+-. ..-.++ -. |.+.+.+.|.++.++-- .++-.|
T Consensus 141 ed-----------q~~kIQRLEvDIdiq--irsCKgsCsr~--~~~~vd-~~---sY~~~QKQLeQv~a~dL~p~~~~q~ 201 (562)
T 3ghg_A 141 RA-----------QLVDMKRLEVDIDIK--IRSCRGSCSRA--LAREVD-LK---DYEDQQKQLEQVIAKDLLPSRDRQH 201 (562)
T ss_dssp HH-----------HHHHHHHHHHHHHHH--HHHGGGTBSCC--CCCCCC-HH---HHHHHHHHHHHHHTTCCCCSCCCC-
T ss_pred HH-----------HHHHHHHHHHHHHHH--HHhccccccch--heeecc-hH---HHHHHHHHHHHHhhcccCCcccccc
Confidence 32 223343333333332 23344443321 111111 11 56778888888765422 235556
Q ss_pred HHHHHH
Q 027302 184 QEEEKI 189 (225)
Q Consensus 184 ~~e~~~ 189 (225)
+--+|+
T Consensus 202 Lp~lKm 207 (562)
T 3ghg_A 202 LPLIKM 207 (562)
T ss_dssp ------
T ss_pred chhccc
Confidence 655554
No 10
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.15 E-value=13 Score=27.46 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=43.9
Q ss_pred HHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhh
Q 027302 14 IRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHN 89 (225)
Q Consensus 14 IRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~ 89 (225)
+++.-....+.|..|..|+++|.-+..++|.+...+..+++--+.++.-.. -+++-+.+|--||.+|-+
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~-------~AE~evasLnRriqllEE 100 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT-------DAEAEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcc
Confidence 344444556678889999999999999988777766666654444433221 123334557777777654
No 11
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=72.20 E-value=15 Score=27.44 Aligned_cols=58 Identities=29% Similarity=0.464 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 31 LKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 31 Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
||+|+ +-.+..+.|||+.-+|. ++||+- .-+-|+.-|..|+.|-..+-..++.||.+.
T Consensus 12 LRrrl---~E~~~q~qaEl~sLrrT----~~EL~~----------G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 12 LRWRM---KEEMDRAQAELNALKRT----EEDLKK----------GHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHhHHHHHHHHH----HHHHHh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67774 55689999999999997 677764 346789999999999999999999999875
No 12
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.03 E-value=56 Score=30.59 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHH----HHHHHHHHhhhhhhhhhhhHHHHH
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQ----ALESRISLIHNEISTVGAEVEALK 102 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq----~LEAris~iQ~EiS~vGs~ldaLK 102 (225)
||..||.+|+.++......+.= --.+-.-|++...+.-=|+..+. -||.+|..||.=|...=-.+..|+
T Consensus 68 rIe~L~~~L~~~s~s~~~~~~y-------~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq 140 (390)
T 1deq_A 68 RINKLRDSLFNYQKNSKDSNTL-------TKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQ 140 (390)
T ss_pred HHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5555555555554443333322 22233345555555544554443 588999999987766555666666
Q ss_pred Hh
Q 027302 103 KE 104 (225)
Q Consensus 103 ~~ 104 (225)
..
T Consensus 141 ~~ 142 (390)
T 1deq_A 141 KN 142 (390)
T ss_pred HH
Confidence 55
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=67.54 E-value=29 Score=25.96 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 29 VGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 29 ~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
.-|+-.|++|+..-...+.+.++++.-++ +|...+..+++|.+..-+-+++|=++
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~---------------------~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQRE---------------------ELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455566666655555555555554433 48888999999999999999988665
No 14
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.08 E-value=18 Score=27.60 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFERE 50 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE 50 (225)
|.-+..|++.|+.+..+-.....|+.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leld 44 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERD 44 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666555444333333333
No 15
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=63.78 E-value=20 Score=24.24 Aligned_cols=50 Identities=6% Similarity=0.197 Sum_probs=33.8
Q ss_pred HHHHHhhhhhhhhhhhHHHHH-HhhhhhhhHHHHHHHHhhHHHHHHHHHhh
Q 027302 82 SRISLIHNEISTVGAEVEALK-KEQESLRDGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 82 Aris~iQ~EiS~vGs~ldaLK-~~~~~~r~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
.....|+..++..-+.++.|- .|.......|...+.+++...++|.+.+.
T Consensus 23 ~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~ 73 (93)
T 4ioe_A 23 NAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILE 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555553 46667789999999999888888876553
No 16
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=63.55 E-value=51 Score=25.73 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=18.3
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 80 LESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 80 LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
.-+.|+.||+||++....-+.|+..
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~ 57 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKY 57 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888877777766655
No 17
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=63.11 E-value=27 Score=25.53 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=21.2
Q ss_pred HHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhh
Q 027302 53 KQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEIS 92 (225)
Q Consensus 53 Kr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS 92 (225)
-..|..+|.++.|..=.|-=.--+--.||++|.-|++||.
T Consensus 41 ~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 41 MLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665443332222334456677766666653
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.39 E-value=65 Score=27.10 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 26 RRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 26 rrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
.-+..+.+|+.+|++.+.....|++..|.=-... -.-.-..|+.||.||++.-...+.|+..
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~-----------------~~e~~~~~~~Lq~el~~l~~~~~~l~~~ 110 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ-----------------YAQSYKQVSVLEDDLSQTRAIKEQLHKY 110 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544321111 1113345777777777666666666554
No 19
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=58.55 E-value=50 Score=24.13 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHH---HHHHHHhhh
Q 027302 76 AFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKI---RTFHKSIAF 132 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kI---R~FQq~i~~ 132 (225)
-+|.+|.+++-|.+-|+..-.+++.=+......+-+.-.-+..|-+|| ..|++.++.
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356777777777777777777777777777777777777777788887 667776654
No 20
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=57.61 E-value=39 Score=22.76 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHH-HhhhhhhhHHHHHHHHhhHHHHHHHHHhh
Q 027302 78 QALESRISLIHNEISTVGAEVEALK-KEQESLRDGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 78 q~LEAris~iQ~EiS~vGs~ldaLK-~~~~~~r~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
..+......|+..++.+-+.++.|. .|.......|...+.+++...++|.+.+.
T Consensus 16 ~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~ 70 (97)
T 2vs0_A 16 QSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLE 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666664 34556678899888888888877776654
No 21
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.20 E-value=29 Score=26.78 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHH-Hhccce-------eeeecchhhHH--HHHHHHHHhhhhhh
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQ-ELKGYE-------VELALNNTAFQ--ALESRISLIHNEIS 92 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~Eq-eL~G~e-------vqlaln~~siq--~LEAris~iQ~EiS 92 (225)
.|..||++|+.|+.+-+--.-+.+.-.-- .|+ .|+|+- |-+..|++++- ..+..+..||.||.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~---Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~e 85 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ---LERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888776655433322221111 122 355653 67888887654 66666666666553
No 22
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=56.70 E-value=43 Score=22.62 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=34.8
Q ss_pred HHHHHHhhhhhhhhhhhHHHHH-HhhhhhhhHHHHHHHHhhHHHHHHHHHhh
Q 027302 81 ESRISLIHNEISTVGAEVEALK-KEQESLRDGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 81 EAris~iQ~EiS~vGs~ldaLK-~~~~~~r~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
......|+..++..-+.++.|. .|.......|...+.++|...++|.+.+.
T Consensus 22 ~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~ 73 (99)
T 3zbh_A 22 NVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLN 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555666666663 45556779999999999998888877654
No 23
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=56.60 E-value=54 Score=24.29 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHH---HHHHHHhhh
Q 027302 75 TAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKI---RTFHKSIAF 132 (225)
Q Consensus 75 ~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kI---R~FQq~i~~ 132 (225)
.-+|.+|.|++-|.+-|+..-.+++.=+......+-+.-.-+..|-+|| ..|++.++.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3467777888888888887777787777777777777777777888887 667776665
No 24
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=55.72 E-value=89 Score=26.02 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhhhhhhhh-------hHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHhhhhcccCC
Q 027302 77 FQALESRISLIHNEISTVGA-------EVEALKKEQESLRDGFIVQMFELNDKIRTFHKSIAFNLQEDD 138 (225)
Q Consensus 77 iq~LEAris~iQ~EiS~vGs-------~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i~~el~~~~ 138 (225)
|.-|+.||+.|+.|+...-. |.-.|-.....+..+--+....||.+++.+|+...-++..-.
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666544333 333333344455566666777899999999999888876544
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.69 E-value=1.1e+02 Score=27.10 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=11.9
Q ss_pred HHHhhhhhhhhhhhHHHHHHhh
Q 027302 84 ISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 84 is~iQ~EiS~vGs~ldaLK~~~ 105 (225)
..++++|+......+..|+...
T Consensus 451 ~e~l~~e~~~~~~~i~~l~~~~ 472 (597)
T 3oja_B 451 NEQLEAEVNELRAEVQQLTNEQ 472 (597)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666654
No 26
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.37 E-value=55 Score=23.47 Aligned_cols=91 Identities=13% Similarity=0.225 Sum_probs=61.2
Q ss_pred CCCCchhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch------
Q 027302 1 MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN------ 74 (225)
Q Consensus 1 mag~d~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~------ 74 (225)
|+ ..|.++-.+|..|. .|..++..+......-..++.+.+-+.+..+.==.+..|-..+-+
T Consensus 1 m~--~~~~e~Q~~i~~~~-----------~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~ 67 (117)
T 2zqm_A 1 MQ--NIPPQVQAMLGQLE-----------SYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTT 67 (117)
T ss_dssp CC--CCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEEC
T ss_pred CC--cccHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhcc
Confidence 55 34556667777655 488899999999988888888888887766642233344444433
Q ss_pred --hhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 75 --TAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 75 --~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
..+..|+.|+..|..+|...-..++.+...
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777666666655554
No 27
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=55.00 E-value=43 Score=22.99 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=31.1
Q ss_pred HhhhhhhhhhhhHHHHH-HhhhhhhhHHHHHHHHhhHHHHHHHHHhh
Q 027302 86 LIHNEISTVGAEVEALK-KEQESLRDGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 86 ~iQ~EiS~vGs~ldaLK-~~~~~~r~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
.|+..++..-+.++.|. .|.....+.|...+.+++...++|.+.+.
T Consensus 26 ~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~ 72 (98)
T 3gwk_C 26 QVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLE 72 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444442 45566779999999999999988887664
No 28
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=52.60 E-value=23 Score=29.54 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=8.8
Q ss_pred HHHHHHHhhhhhhhhhhhHHHH
Q 027302 80 LESRISLIHNEISTVGAEVEAL 101 (225)
Q Consensus 80 LEAris~iQ~EiS~vGs~ldaL 101 (225)
.++.+..++..+......++.+
T Consensus 127 a~a~~~~~~~~l~~~~~~l~~a 148 (369)
T 4dk0_A 127 AKAEMDVVQENIKQAEIEVNTA 148 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.92 E-value=78 Score=28.07 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHH
Q 027302 78 QALESRISLIHNEISTVGAEVEALKK 103 (225)
Q Consensus 78 q~LEAris~iQ~EiS~vGs~ldaLK~ 103 (225)
|.++..+...+++.-.+..+++.|+.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 33333333334444444444444443
No 30
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.85 E-value=64 Score=23.22 Aligned_cols=74 Identities=8% Similarity=0.088 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccc-------eeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHH
Q 027302 29 VGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGY-------EVELALNNTAFQALESRISLIHNEISTVGAEVEAL 101 (225)
Q Consensus 29 ~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~-------evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaL 101 (225)
..++.+|..|+.....-..+++..++.-...+. .|. ++.=......|...++.+..++.+|..+-..+..|
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~--~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l 90 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKK--AKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSEL 90 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444333322 133 22211122345566666666666666666666666
Q ss_pred HHh
Q 027302 102 KKE 104 (225)
Q Consensus 102 K~~ 104 (225)
+..
T Consensus 91 ~~~ 93 (112)
T 1l8d_A 91 ERE 93 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 31
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=49.55 E-value=94 Score=31.57 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhhhhhhhhhHHH
Q 027302 79 ALESRISLIHNEISTVGAEVEA 100 (225)
Q Consensus 79 ~LEAris~iQ~EiS~vGs~lda 100 (225)
.+++++..+++|+...-.++..
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.46 E-value=47 Score=25.25 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 027302 27 RVVGLKKRIEKLRLELEAE 45 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daa 45 (225)
-+..|++.|+.|+++++..
T Consensus 37 Ei~elrr~iq~L~~el~~l 55 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNV 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665543
No 33
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=48.38 E-value=14 Score=27.58 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHH
Q 027302 77 FQALESRISLIHNEISTVGAEVEALKKEQESLRDGFI 113 (225)
Q Consensus 77 iq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fi 113 (225)
...||+.+..|..+|...-.++..|+..-...+..|+
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 3458888888888888888888888776544444443
No 34
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=47.98 E-value=66 Score=25.66 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=30.8
Q ss_pred eeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 67 EVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 67 evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
++.|.=+..-..+.|++|-.|.+|+-.||..+-.|-...
T Consensus 86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~e 124 (147)
T 2b9c_A 86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKV 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 344444556667789999999999999999998887765
No 35
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=47.10 E-value=1.1e+02 Score=24.77 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=70.4
Q ss_pred eeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhh--hhh-hHHHHHHHHhhHHHHHHHHHhhhhcccCCCcCcccc
Q 027302 69 ELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQE--SLR-DGFIVQMFELNDKIRTFHKSIAFNLQEDDSFGTAAV 145 (225)
Q Consensus 69 qlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~--~~r-~~Fis~m~~LN~kIR~FQq~i~~el~~~~~~g~ta~ 145 (225)
.|.=+..-..+.|++|..|.+|+-.||..+-.|-.... +.| +.|-.++-.|..+...= .
T Consensus 29 dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA------------------E 90 (155)
T 2efr_A 29 LLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA------------------E 90 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence 33444556677889999999999999987777765532 111 33333333333332211 1
Q ss_pred cccccccccCCChhhhhhHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027302 146 SEADHNFSKKGVPEVALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVSLME 208 (225)
Q Consensus 146 teA~~~~s~~~~~~vd~e~i~~~l~dvvSq~~~EeeeY~~e~~~~eqv~qELaD~qaK~sLMe 208 (225)
+.| ..++-....|.+.|++.--.+..+.+.|..-...-++...+|..+++|.--++
T Consensus 91 ~RA-------E~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 91 TRA-------EFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 101 11122344567777777777777888888877777888888888877755444
No 36
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=46.08 E-value=18 Score=24.39 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.8
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHHH
Q 027302 105 QESLRDGFIVQMFELNDKIRTFHK 128 (225)
Q Consensus 105 ~~~~r~~Fis~m~~LN~kIR~FQq 128 (225)
.+.+-.-|.+.|-=||..|.+||+
T Consensus 17 k~sLdPsf~Ha~RLl~~EIek~qk 40 (41)
T 2xa6_A 17 KDSLDPSFTHAMQLLTAEIEKIQK 40 (41)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHHHHHHHHc
Confidence 345667899999999999999997
No 37
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.75 E-value=2.6e+02 Score=28.45 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=6.9
Q ss_pred HHHHHHHhhhhhh
Q 027302 167 DKIAEVVSQTARE 179 (225)
Q Consensus 167 ~~l~dvvSq~~~E 179 (225)
..|.++|+++.+|
T Consensus 1019 ~~L~~kv~~L~~e 1031 (1080)
T 2dfs_A 1019 HETEQLVSELKEQ 1031 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555555
No 38
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=44.82 E-value=71 Score=21.68 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHH-hhhhhhhHHHHHHHHhhHHHHHHHHHh
Q 027302 76 AFQALESRISLIHNEISTVGAEVEALKK-EQESLRDGFIVQMFELNDKIRTFHKSI 130 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaLK~-~~~~~r~~Fis~m~~LN~kIR~FQq~i 130 (225)
....+.+....|+..++.+-+.++.|.. +...-...|-..+.+.|...+++.+.+
T Consensus 13 ~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L 68 (94)
T 3fav_B 13 AASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNAL 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777753 455566788888888887776666554
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.74 E-value=49 Score=25.28 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027302 28 VVGLKKRIEKLRLELEAE 45 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daa 45 (225)
+..|+++|+.|+++++..
T Consensus 40 i~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566777777777766544
No 40
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=44.63 E-value=16 Score=23.35 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 027302 24 GERRVVGLKKRIEKLRLELEAENFEREEAKQ 54 (225)
Q Consensus 24 GErrv~~Lkkri~~l~~e~daanaElE~aKr 54 (225)
|.--+..||+.|..++.+.|.|..+++.+.+
T Consensus 2 g~~~i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 2 GSSSLEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp ----CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999888776654
No 41
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=43.98 E-value=21 Score=29.52 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHH
Q 027302 30 GLKKRIEKLRLELEAENFEREEAK 53 (225)
Q Consensus 30 ~Lkkri~~l~~e~daanaElE~aK 53 (225)
.++..+..++++++.|.++++.|+
T Consensus 73 ~~~a~l~~~~a~l~~a~~~~~~a~ 96 (341)
T 3fpp_A 73 EVEATLMELRAQRQQAEAELKLAR 96 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 42
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=43.98 E-value=83 Score=22.27 Aligned_cols=55 Identities=7% Similarity=0.114 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHh---hhhhhhHHHHHHHHhhHHHHHHHHHh
Q 027302 76 AFQALESRISLIHNEISTVGAEVEALKKE---QESLRDGFIVQMFELNDKIRTFHKSI 130 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaLK~~---~~~~r~~Fis~m~~LN~kIR~FQq~i 130 (225)
....+......|+.+++.+-+.|+.|... ...-...|-..+.+.|...+++.+.+
T Consensus 19 ~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L 76 (103)
T 4i0x_B 19 VTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGL 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888888888888888876 55677888888888888777766554
No 43
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.13 E-value=53 Score=26.44 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=39.3
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHH
Q 027302 11 LTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKE 57 (225)
Q Consensus 11 lslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE 57 (225)
.+|--..-.||++|..+|..|+--|..|...+.-|-+|+|.-+|-.+
T Consensus 56 ~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 56 MALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 35666677889999999999999999999999999999887776644
No 44
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=42.67 E-value=43 Score=25.65 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHH
Q 027302 76 AFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHK 128 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq 128 (225)
..+.|+.=+-.||++++.+.+..+.|+.|.+..|+.|--...+|=..+-.|-.
T Consensus 14 Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e 66 (94)
T 3fx7_A 14 FVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE 66 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667877888999999999999999999999998887777666655555543
No 45
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=42.26 E-value=20 Score=26.38 Aligned_cols=48 Identities=40% Similarity=0.449 Sum_probs=22.4
Q ss_pred HHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhH
Q 027302 61 QELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDG 111 (225)
Q Consensus 61 qeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~ 111 (225)
|-|.|.+.+|+--+.-|-++| |.||-=--+-..+|++|......-||+
T Consensus 19 qalggseaelaafekeiaafe---selqaykgkgnpevealrkeaaairde 66 (73)
T 2a3d_A 19 QALGGSEAELAAFEKEIAAFE---SELQAYKGKGNPEVEALRKEAAAIRDE 66 (73)
T ss_dssp HHCSSGGGTHHHHHHHHHHHH---HHHHHSSSCCSSTTTHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHH---HHHHHhccCCChHHHHHHHHHHHHHHH
Confidence 456665555544333333444 222222223334556666555555554
No 46
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=40.23 E-value=42 Score=23.14 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhh
Q 027302 30 GLKKRIEKLRLELEA 44 (225)
Q Consensus 30 ~Lkkri~~l~~e~da 44 (225)
+|-+=|.++|+.++.
T Consensus 6 DL~~il~eiRaQYE~ 20 (77)
T 3trt_A 6 DCTAAMRDVRQQYES 20 (77)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 455667778877764
No 47
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.18 E-value=76 Score=26.16 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=28.4
Q ss_pred hhHHHHHHHhhhhhcccchhHHHHH-------HHHHHHHHHHhhhhhhH
Q 027302 8 KHLLTLIRDFASEKSQGERRVVGLK-------KRIEKLRLELEAENFER 49 (225)
Q Consensus 8 KqLlslIRDFa~EkS~GErrv~~Lk-------kri~~l~~e~daanaEl 49 (225)
+.+...|++..+|..+=++++..|+ +-++.|+.|+.+-+.++
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~ 112 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIEN 112 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566688888888888888888887 44555555555555443
No 48
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=38.93 E-value=1.4e+02 Score=23.36 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=36.8
Q ss_pred HHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 56 KETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 56 kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
=+.+-.+|..|-=.+.+++.-...+|.|++.|..=-.+-|..++.|-.+.
T Consensus 103 l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~ 152 (175)
T 4abx_A 103 VQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFG 152 (175)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33444566666666788999999999999998877777777777666554
No 49
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.18 E-value=1e+02 Score=21.69 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecch--------hhHHHHHHHHHHhhhhhhhhhhhHH
Q 027302 28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNN--------TAFQALESRISLIHNEISTVGAEVE 99 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~--------~siq~LEAris~iQ~EiS~vGs~ld 99 (225)
+..|..++..+.+....-..++.+.+-+.+..+.==.+..|--.+-+ .....|+.++..|..+|.+.-..++
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~ 89 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEE 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999998888888888887776642223334443332 4567778888777777777666666
Q ss_pred HHHHh
Q 027302 100 ALKKE 104 (225)
Q Consensus 100 aLK~~ 104 (225)
.+...
T Consensus 90 ~~~~~ 94 (107)
T 1fxk_A 90 RVMKK 94 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 50
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.77 E-value=98 Score=35.53 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhhhhhHHHHH
Q 027302 34 RIEKLRLELEAENFEREEAK 53 (225)
Q Consensus 34 ri~~l~~e~daanaElE~aK 53 (225)
++..+..++++|+++|.+++
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~ 2034 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIV 2034 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 51
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.79 E-value=92 Score=22.01 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=27.7
Q ss_pred hhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHH
Q 027302 20 EKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIE 60 (225)
Q Consensus 20 EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~E 60 (225)
...++|.-|.+|++||.-+..++|.+...|..|-+--+.++
T Consensus 35 ~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 35 RSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677778888888888888777777766655544443
No 52
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.96 E-value=1.1e+02 Score=23.94 Aligned_cols=44 Identities=27% Similarity=0.232 Sum_probs=33.3
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 027302 81 ESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIR 124 (225)
Q Consensus 81 EAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR 124 (225)
|.+++.|+.-+...+.++|.+|.+-....-+--+.+-.|...|.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~ 45 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLS 45 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888899999999999999877666555555666666553
No 53
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.49 E-value=51 Score=22.39 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027302 189 IQKQVQLELIDLERKVSLMEMIAYET 214 (225)
Q Consensus 189 ~~eqv~qELaD~qaK~sLMe~i~~et 214 (225)
+.+.+++|++++++|+..+..=..|+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766554444443
No 54
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=33.66 E-value=72 Score=23.26 Aligned_cols=48 Identities=6% Similarity=0.143 Sum_probs=29.5
Q ss_pred HHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 50 EEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 50 E~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
++|+|+|+..-+--.- ...-...|++.+..|+.+|...-.++..||..
T Consensus 25 ~AakrSR~krk~r~~e-------~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLE-------TQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667776655432211 01233457888888888888777777777754
No 55
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=33.46 E-value=45 Score=22.99 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 76 AFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
-+|+|=+.|+.|+.+|...++++.+-|.+
T Consensus 12 ~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 12 DAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655544
No 56
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=33.17 E-value=1.5e+02 Score=23.25 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=4.6
Q ss_pred HHHHHHHhhhhh
Q 027302 80 LESRISLIHNEI 91 (225)
Q Consensus 80 LEAris~iQ~Ei 91 (225)
|..++..||.+|
T Consensus 115 l~~~~~~l~~~~ 126 (138)
T 3hnw_A 115 LKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 57
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=33.06 E-value=1.4e+02 Score=22.49 Aligned_cols=42 Identities=5% Similarity=0.233 Sum_probs=26.5
Q ss_pred HhhhhhhhhhhhHHHHHHhhh---hhhhHHHHHHHHhhHHHHHHH
Q 027302 86 LIHNEISTVGAEVEALKKEQE---SLRDGFIVQMFELNDKIRTFH 127 (225)
Q Consensus 86 ~iQ~EiS~vGs~ldaLK~~~~---~~r~~Fis~m~~LN~kIR~FQ 127 (225)
.||+|+|+|.++.-++-++-. .-..++-..|..|-.+++.||
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888777666544321 112566667777777777765
No 58
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=32.97 E-value=1.8e+02 Score=23.77 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAK 53 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aK 53 (225)
.+..++.++...+++++.|..+++..+
T Consensus 77 ~l~~~~a~l~~a~~~~~~a~~~~~r~~ 103 (341)
T 3fpp_A 77 TLMELRAQRQQAEAELKLARVTYSRQQ 103 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 59
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.41 E-value=85 Score=21.19 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=10.8
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHH
Q 027302 80 LESRISLIHNEISTVGAEVEALK 102 (225)
Q Consensus 80 LEAris~iQ~EiS~vGs~ldaLK 102 (225)
|++.++.|..+|+..-.++..||
T Consensus 34 L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 60
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=30.76 E-value=1.6e+02 Score=24.77 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHh
Q 027302 77 FQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELNDKIRTFHKSI 130 (225)
Q Consensus 77 iq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN~kIR~FQq~i 130 (225)
..++|+-|..+++-|..+.++++.|+...+..-+.+-..++.|+.+...-....
T Consensus 167 ~e~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~~~w~~L~~~~ 220 (235)
T 2odv_A 167 AGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEY 220 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777778889999999999988877888788888887664443333
No 61
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.91 E-value=54 Score=27.23 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=6.3
Q ss_pred HHHHHHHHhhhhhhHHH
Q 027302 35 IEKLRLELEAENFEREE 51 (225)
Q Consensus 35 i~~l~~e~daanaElE~ 51 (225)
|..+++++..|.++++.
T Consensus 79 l~~~~a~l~~a~~~~~~ 95 (369)
T 4dk0_A 79 LASYQAQLVARKTAYDV 95 (369)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 62
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=29.65 E-value=1.2e+02 Score=23.30 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=36.1
Q ss_pred hhhHHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 027302 7 KKHLLTLIRDFASEKSQGE-RRVVGLKKRIEKLRLELEAENFEREEAKQL 55 (225)
Q Consensus 7 qKqLlslIRDFa~EkS~GE-rrv~~Lkkri~~l~~e~daanaElE~aKr~ 55 (225)
+++++.+-++..+=-+|-| -+-..|+|+++++..+++.-|..|..++-.
T Consensus 29 k~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~ 78 (93)
T 3sjb_C 29 VKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKA 78 (93)
T ss_dssp HHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555 467889999999999999999998887754
No 63
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=29.59 E-value=61 Score=27.22 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=26.9
Q ss_pred cchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHhh
Q 027302 72 LNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGFIVQMFELN 120 (225)
Q Consensus 72 ln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~Fis~m~~LN 120 (225)
+...+++.|+++|.+|++++ .+.|.+....++..-..+.+||
T Consensus 132 ~AertV~kLqkeiD~LEDeL-------~~eKek~k~i~~eLDqTl~eL~ 173 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKV-------AHAKEENLNMHQMLDQTLLELN 173 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 34456777777777777776 6667666555555555555555
No 64
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=29.54 E-value=88 Score=27.59 Aligned_cols=66 Identities=15% Similarity=0.424 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 32 KKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 32 kkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
.-||.-++.+++ ++..|+.. .+..|.+-+|.|.-++.-|-+|..+|+.|+.-|+..-+.+.+|..-
T Consensus 83 e~rI~a~~a~l~------dHE~RIt~-~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~D 148 (242)
T 3c9i_A 83 EARIKQLRIDVD------DHESRITA-NTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQAD 148 (242)
T ss_dssp HHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccc------cHHHHhhh-hhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhh
Confidence 345444444443 34456643 3446777777777777777777777777777777777777776654
No 65
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=28.06 E-value=73 Score=21.53 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=24.3
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHH
Q 027302 24 GERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQ 61 (225)
Q Consensus 24 GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~Eq 61 (225)
+||-|.-|.|.|++|.-++..+. +.-|.+.+...|
T Consensus 10 AERsV~KLek~ID~LEdeL~~eK---ek~~~i~~eLD~ 44 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQK---LKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHH
Confidence 47999999999999988777543 334444444443
No 66
>4djb_A E4-ORF3; adenovirus protein, RRM-like fold, HPV E2 DBD-like protein, suppressor inactivation, nucleus, viral protein; 2.05A {Human adenovirus 5}
Probab=28.00 E-value=46 Score=27.06 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=47.3
Q ss_pred CCCCchhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHH
Q 027302 1 MEGSDPKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQAL 80 (225)
Q Consensus 1 mag~d~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~L 80 (225)
|+|-|-|-++..+||++-.|.--|- ++..+.=.| |.+=+++-+=+.++.-.---|
T Consensus 33 m~Gl~L~~~~~~Ii~~Wk~ENYLGm----------------Vq~c~~mie---------e~~~~aF~~lvfL~VRv~aLl 87 (130)
T 4djb_A 33 MAGLNIRDLLRDILRRWRDENYLGM----------------VEGAGMFIE---------EIHPEGFSLYVHLDVRAVSLL 87 (130)
T ss_dssp HTTCCHHHHHHHHHHHHHHTGGGGS----------------CSCEEEEEE---------ECSSSEEEEEEEEECCSHHHH
T ss_pred HcCCCHHHHHHHHHHHHhhcchhHH----------------HHHHHHHhc---------cCCCCcEEEEEEEEeeHHHHH
Confidence 7899999999999999998876662 122221110 233467788888888777778
Q ss_pred HHHHHHhhhhh
Q 027302 81 ESRISLIHNEI 91 (225)
Q Consensus 81 EAris~iQ~Ei 91 (225)
||.|+||.+-|
T Consensus 88 eAvV~hLENRi 98 (130)
T 4djb_A 88 EAIVQHLTEAI 98 (130)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987755
No 67
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.70 E-value=7.7e+02 Score=28.60 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhh
Q 027302 161 ALKTLEDKIAEVVSQTAREEELYQEEEKIQKQVQLELIDLERKVS----LMEMIAYET 214 (225)
Q Consensus 161 d~e~i~~~l~dvvSq~~~EeeeY~~e~~~~eqv~qELaD~qaK~s----LMe~i~~et 214 (225)
.+..+...|.++..++++=.++|.+-....++++.|...+++|.. |+....+|-
T Consensus 2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 566777888888888888889999888889999999999999976 555555553
No 68
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=25.83 E-value=78 Score=28.80 Aligned_cols=71 Identities=24% Similarity=0.257 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhc-cceeeeecchhhHHHHHHHH
Q 027302 6 PKKHLLTLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELK-GYEVELALNNTAFQALESRI 84 (225)
Q Consensus 6 ~qKqLlslIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~-G~evqlaln~~siq~LEAri 84 (225)
+=.+|-.+|+...--+ .++.--.++=.+-||-+| |.||++-+++-+.+..=|+ |. -|..-|+++||-||
T Consensus 213 tT~~La~ii~~a~p~~---~~~~hpAtrtFQALRI~V---N~EL~~L~~~L~~a~~~L~~gG----Rl~VISFHSLEDRi 282 (347)
T 3tka_A 213 RTKELAEVVAAATPVK---DKFKHPATRTFQAVRIWV---NSELEEIEQALKSSLNVLAPGG----RLSIISFHSLEDRI 282 (347)
T ss_dssp BHHHHHHHHHHHSCCC-------CTTHHHHHHHHHHH---HTHHHHHHHHHHHHHHHEEEEE----EEEEEESSHHHHHH
T ss_pred cHHHHHHHHHHhCCcc---ccCCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCCC----EEEEEecCchhHHH
Confidence 3345666666554211 122233445556666554 8899999999888888775 22 46677999999888
Q ss_pred HH
Q 027302 85 SL 86 (225)
Q Consensus 85 s~ 86 (225)
=.
T Consensus 283 VK 284 (347)
T 3tka_A 283 VK 284 (347)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 69
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.66 E-value=1.6e+02 Score=22.11 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFEREEAKQLKET 58 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaElE~aKr~kE~ 58 (225)
|||-.-|+..|.+++.+++-+....+...+.+.+
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~v 47 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDV 47 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887777666665555555444
No 70
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.55 E-value=72 Score=23.29 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhH
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFER 49 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaEl 49 (225)
|.||.+|+.+|++-+.+-+....|+
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~El 44 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777776666666654
No 71
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=25.38 E-value=2.6e+02 Score=22.24 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhHH
Q 027302 31 LKKRIEKLRLELEAENFEREEAKQLKE 57 (225)
Q Consensus 31 Lkkri~~l~~e~daanaElE~aKr~kE 57 (225)
+..++..+++++..|.++++.|++--+
T Consensus 58 ~~~~l~~a~a~l~~a~a~l~~a~~~~~ 84 (277)
T 2f1m_A 58 YQATYDSAKGDLAKAQAAANIAQLTVN 84 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666655433
No 72
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=25.32 E-value=1.6e+02 Score=19.76 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=15.6
Q ss_pred cchhhHHHHHHHHHHhhhhhh
Q 027302 72 LNNTAFQALESRISLIHNEIS 92 (225)
Q Consensus 72 ln~~siq~LEAris~iQ~EiS 92 (225)
+....|.+||.++.+++.-||
T Consensus 44 ~~~~~i~~Le~k~~~l~~~l~ 64 (66)
T 3m0a_A 44 LDQDKIEALSSKVQQLERSIG 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhHHHHHHHHHHHHHHHHc
Confidence 347889999999988776543
No 73
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=24.91 E-value=2e+02 Score=20.94 Aligned_cols=95 Identities=6% Similarity=0.059 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhh
Q 027302 26 RRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQ 105 (225)
Q Consensus 26 rrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~ 105 (225)
+.+...+..+...+.++..+...|+.-..-+....+.+..-. .-.+++..++....=|..|...|..--..|..+....
T Consensus 19 ~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~-~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~ 97 (150)
T 3ajw_A 19 KEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDM-GNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKV 97 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--C-CSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666666666555555553211 1123444334444444444444444444444444444
Q ss_pred hhhhhHHHHHHHHhhH
Q 027302 106 ESLRDGFIVQMFELND 121 (225)
Q Consensus 106 ~~~r~~Fis~m~~LN~ 121 (225)
...|..+...+-+.+.
T Consensus 98 e~~r~~l~~a~~~~k~ 113 (150)
T 3ajw_A 98 DLALKSWREKKQRLQA 113 (150)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555444443
No 74
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.77 E-value=1.2e+02 Score=20.88 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 49 REEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 49 lE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
-++|.|++.---+- +..||.++..|..|-+..-++++.|+..
T Consensus 18 reAArrsR~RK~~~--------------~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 18 TEAARRSRARKLQR--------------MKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666544433 3347777777777777777777777654
No 75
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=24.37 E-value=52 Score=21.95 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=20.6
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhh
Q 027302 11 LTLIRDFASEKSQGERRVVGLKKRIEKLRLELEA 44 (225)
Q Consensus 11 lslIRDFa~EkS~GErrv~~Lkkri~~l~~e~da 44 (225)
..|+-|+-+----=|.|+..|..||+.|+..+.+
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444432222378888888888888776643
No 76
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.04 E-value=80 Score=21.35 Aligned_cols=14 Identities=43% Similarity=0.581 Sum_probs=10.2
Q ss_pred HHHHHHHhhhhhhh
Q 027302 80 LESRISLIHNEIST 93 (225)
Q Consensus 80 LEAris~iQ~EiS~ 93 (225)
||.|||-||+|=.+
T Consensus 22 LEervstLq~EN~m 35 (42)
T 2oqq_A 22 LEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 78888888877443
No 77
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.94 E-value=1.3e+02 Score=20.28 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHH
Q 027302 78 QALESRISLIHNEISTVGAEVEALKK 103 (225)
Q Consensus 78 q~LEAris~iQ~EiS~vGs~ldaLK~ 103 (225)
..||.++..|+.|-...-.++..|+.
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777777776666666666654
No 78
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=23.53 E-value=3e+02 Score=22.33 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=35.2
Q ss_pred hccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhh---hHHHHHHHHhhHHHHHH
Q 027302 63 LKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQESLR---DGFIVQMFELNDKIRTF 126 (225)
Q Consensus 63 L~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r---~~Fis~m~~LN~kIR~F 126 (225)
|+-.+-..-+++-+++.||..|..+.+++...-.....+...-+..= .++-+-+|+||..|-.+
T Consensus 86 LKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 86 LKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 33333444456667777887777777776654333333333222111 22356678888877554
No 79
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.75 E-value=94 Score=22.30 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhc
Q 027302 26 RRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELK 64 (225)
Q Consensus 26 rrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~ 64 (225)
..+.....++..++..+.....++...++-.+..+.++.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666655555555544
No 80
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=22.69 E-value=1.9e+02 Score=19.89 Aligned_cols=51 Identities=8% Similarity=0.129 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHH-HhhhhhhhHHHHHHHHhhHHHHHHHHHh
Q 027302 80 LESRISLIHNEISTVGAEVEALK-KEQESLRDGFIVQMFELNDKIRTFHKSI 130 (225)
Q Consensus 80 LEAris~iQ~EiS~vGs~ldaLK-~~~~~~r~~Fis~m~~LN~kIR~FQq~i 130 (225)
+......|+..+..+-+.++.|. .|...-...|-..+.+.|...+++.+.+
T Consensus 19 ~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L 70 (101)
T 3fav_A 19 FERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQEL 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555553 3445566788888888887766666544
No 81
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=22.52 E-value=3.6e+02 Score=22.95 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhhhhhHH-------HHHHHHhhHHHHHHHHHhh
Q 027302 75 TAFQALESRISLIHNEISTVGAEVEALKKEQESLRDGF-------IVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 75 ~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~~r~~F-------is~m~~LN~kIR~FQq~i~ 131 (225)
.+++.+-.+...++.||....+.++.|...+...+.-. -..|..||.+-..|++.+.
T Consensus 399 ~~le~~l~~~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~W~~L~~~~~ 462 (476)
T 1hci_A 399 GALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIA 462 (476)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 44455445555666666666666666654433222110 0244555555555555443
No 82
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=22.42 E-value=65 Score=20.97 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=20.2
Q ss_pred cchhhHHHHHHHHHHhhhhhhhhhhhH
Q 027302 72 LNNTAFQALESRISLIHNEISTVGAEV 98 (225)
Q Consensus 72 ln~~siq~LEAris~iQ~EiS~vGs~l 98 (225)
.....+..|+.+|..|...|....+.|
T Consensus 41 ~~~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 41 VSTKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568889999999988887766643
No 83
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=22.40 E-value=88 Score=23.15 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=10.9
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhh
Q 027302 25 ERRVVGLKKRIEKLRLELEAENFE 48 (225)
Q Consensus 25 Errv~~Lkkri~~l~~e~daanaE 48 (225)
|.||.+|+.+|++-+.+-+.+..|
T Consensus 26 e~~v~~le~~Le~s~~~q~~~~~E 49 (79)
T 3cvf_A 26 EHQLRAMERSLEEARAERERARAE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 84
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.39 E-value=46 Score=21.97 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHhhhhhhhhhh
Q 027302 75 TAFQALESRISLIHNEISTVGA 96 (225)
Q Consensus 75 ~siq~LEAris~iQ~EiS~vGs 96 (225)
.-++.||++|..|..-|...++
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5678899999988888777654
No 85
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.32 E-value=53 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 80 LESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 80 LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
||.++..+..+.+....+.+.|+..
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555554444444
No 86
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.22 E-value=1.7e+02 Score=24.51 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=25.6
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHH
Q 027302 23 QGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQ 61 (225)
Q Consensus 23 ~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~Eq 61 (225)
++||.|..|.+.|+.|..++.++. +.-+.+.+..+|
T Consensus 132 ~AertV~kLqkeiD~LEDeL~~eK---ek~k~i~~eLDq 167 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKVAHAK---EENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 578999999999999998885544 444455444443
No 87
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.85 E-value=2.7e+02 Score=20.84 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeec-chhhHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 32 KKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELAL-NNTAFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 32 kkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlal-n~~siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
-.|...|+..++.-+.+++.+.+.|++++.=.+=|+=.=+| |+.|+ +. +++.++..+|.|+..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~---~~-------~L~e~~~kid~L~~e 77 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL---EP-------QIAETLSNIERLKLE 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGS---HH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH---HH-------HHHHHHHHHHHHHHH
Confidence 36788899999999999999999999999988877766666 33444 43 444455555555544
No 88
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=20.79 E-value=62 Score=24.42 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHH
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEA 52 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~a 52 (225)
-|+.|.|+|-+|.+.+.+...|+..+
T Consensus 59 SViRLQKKImdLE~~~~~l~~el~~~ 84 (88)
T 1uuj_A 59 SVIRLQKKVMELESKLNEAKEEFTSG 84 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999988888653
No 89
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.58 E-value=1.6e+02 Score=22.00 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhc
Q 027302 30 GLKKRIEKLRLELEAENFEREEAKQLKETIEQELK 64 (225)
Q Consensus 30 ~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~ 64 (225)
+|=.|+++|-++-++-+.|+++...++...++-++
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~ 68 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999998888766555444
No 90
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.58 E-value=3.5e+02 Score=22.07 Aligned_cols=21 Identities=5% Similarity=0.237 Sum_probs=11.5
Q ss_pred ecchhhHHHHHHHHHHhhhhh
Q 027302 71 ALNNTAFQALESRISLIHNEI 91 (225)
Q Consensus 71 aln~~siq~LEAris~iQ~Ei 91 (225)
.++++.|.+|-..|+.++.++
T Consensus 109 ~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 109 SPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 355566666665555554443
No 91
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}
Probab=20.45 E-value=1.8e+02 Score=27.46 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=60.7
Q ss_pred hhhhhHHHHHHhhhhhhhHHHHHHHH-------hhH-HHHHHHHHhhhhcccCCC----cCc----ccccccccccccCC
Q 027302 93 TVGAEVEALKKEQESLRDGFIVQMFE-------LND-KIRTFHKSIAFNLQEDDS----FGT----AAVSEADHNFSKKG 156 (225)
Q Consensus 93 ~vGs~ldaLK~~~~~~r~~Fis~m~~-------LN~-kIR~FQq~i~~el~~~~~----~g~----ta~teA~~~~s~~~ 156 (225)
.-|++||++|.-.-.++.+|.+++.. |+. ++++.+.-++.....-.. .|. +++.-+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~~lsa~~~~~L~~~~~~~~~~~pp~~r~~ga~s~fs~s~~a~------- 173 (407)
T 2p7n_A 101 APGAELDEARNAQTVSARLFEGNLKGVAQSGHAMSAEQKQALQSGLDDVFADAPPQARSAGAPMLYSANAAAG------- 173 (407)
T ss_dssp CSCCTTTTHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHSSCCHHHHTTSHHHHHHHHHHHH-------
T ss_pred CCccchHHHhccchHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHhhhhCCcchhccccccccccccccc-------
Confidence 35778888888777777777777765 454 667777777754322111 011 1111111
Q ss_pred ChhhhhhHHHHHHHHHHhhhhhh-HHhhHHHHHHHHHHHHHHHHHHHHH
Q 027302 157 VPEVALKTLEDKIAEVVSQTARE-EELYQEEEKIQKQVQLELIDLERKV 204 (225)
Q Consensus 157 ~~~vd~e~i~~~l~dvvSq~~~E-eeeY~~e~~~~eqv~qELaD~qaK~ 204 (225)
......-|-++|.+..++|-+. -.-|..--+.+-+.-|++-++..|+
T Consensus 174 -~g~S~aeLw~~Isd~I~nIksdYldvYa~IvK~YTdyyQdfNeaLSkl 221 (407)
T 2p7n_A 174 -QGMADSDLWDMISDQIGKIKDNYLGVYENVVGQYTDFYKAFSDILSQM 221 (407)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224555667777777777755 4445555666666667776666654
No 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.12 E-value=1.1e+02 Score=21.93 Aligned_cols=49 Identities=10% Similarity=0.201 Sum_probs=21.4
Q ss_pred HHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHH
Q 027302 52 AKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEA 100 (225)
Q Consensus 52 aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~lda 100 (225)
...+++--++-++.-+-+|.--....+.|.+.+..|...|...-+++..
T Consensus 20 QRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 20 QRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444443332233333444444444444444444433
No 93
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.10 E-value=3.2e+02 Score=22.79 Aligned_cols=62 Identities=18% Similarity=0.316 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhh---hhhhHHHHHHHH-----hhH---HHHHHHHHhhhhccc
Q 027302 75 TAFQALESRISLIHNEISTVGAEVEALKKEQE---SLRDGFIVQMFE-----LND---KIRTFHKSIAFNLQE 136 (225)
Q Consensus 75 ~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~---~~r~~Fis~m~~-----LN~---kIR~FQq~i~~el~~ 136 (225)
.++..|++++++++.|.....++..-|+..-. ....++=..||. ||. |||..|+.+.-+.++
T Consensus 132 ~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~ 204 (213)
T 1ik9_A 132 DTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQE 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Done!