Query 027302
Match_columns 225
No_of_seqs 17 out of 19
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 12:53:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027302.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027302hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wa8a1 a.25.3.1 (A:1-99) ESAT 73.1 4.6 0.00034 26.8 6.1 56 76-131 13-69 (99)
2 d1wa8b1 a.25.3.1 (B:602-695) E 46.1 29 0.0021 22.7 6.2 55 75-129 12-67 (94)
3 d1io1a_ e.32.1.1 (A:) Phase 1 36.7 20 0.0015 26.2 4.4 40 52-96 33-72 (395)
4 d2etda1 a.29.9.1 (A:35-183) Hy 30.1 87 0.0064 22.2 7.7 26 107-132 109-134 (149)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 26.7 89 0.0065 21.2 12.3 78 27-104 9-117 (133)
6 d1i4da_ a.238.1.2 (A:) Arfapti 25.8 94 0.0068 21.1 7.9 75 28-128 103-178 (200)
7 d1u5pa2 a.7.1.1 (A:1772-1872) 24.4 76 0.0056 19.6 5.9 58 73-130 29-93 (101)
8 d2f23a1 a.2.1.1 (A:3-77) GreA 21.9 1.1E+02 0.0078 20.4 6.1 14 80-93 56-69 (75)
9 d1ykhb1 a.252.1.1 (B:2-130) RN 21.0 1.3E+02 0.0092 21.6 6.4 27 32-58 90-116 (129)
10 d2efla1 a.238.1.4 (A:1-288) Fo 19.9 1.4E+02 0.011 21.2 11.3 104 12-129 97-207 (288)
No 1
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=73.13 E-value=4.6 Score=26.78 Aligned_cols=56 Identities=7% Similarity=0.095 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHH-HhhhhhhhHHHHHHHHhhHHHHHHHHHhh
Q 027302 76 AFQALESRISLIHNEISTVGAEVEALK-KEQESLRDGFIVQMFELNDKIRTFHKSIA 131 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaLK-~~~~~~r~~Fis~m~~LN~kIR~FQq~i~ 131 (225)
....+......|+..++.+-+.++.|. .|....++.|...|.+.|...+++.+.+.
T Consensus 13 ~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~ 69 (99)
T d1wa8a1 13 EAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELD 69 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888889999999987 46667788899888888888777776553
No 2
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=46.05 E-value=29 Score=22.72 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHH-hhhhhhhHHHHHHHHhhHHHHHHHHH
Q 027302 75 TAFQALESRISLIHNEISTVGAEVEALKK-EQESLRDGFIVQMFELNDKIRTFHKS 129 (225)
Q Consensus 75 ~siq~LEAris~iQ~EiS~vGs~ldaLK~-~~~~~r~~Fis~m~~LN~kIR~FQq~ 129 (225)
.+...+.+....|+.+++.+-+.++.|.. +...-++.|...+.+.|..-+++++.
T Consensus 12 ~~a~~i~~~~~~i~~~l~~L~~~~~~l~~~W~G~A~~af~~~~~~W~~~~~~l~~~ 67 (94)
T d1wa8b1 12 AAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNA 67 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888863 44556677877777766665555544
No 3
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=36.70 E-value=20 Score=26.17 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=34.6
Q ss_pred HHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhh
Q 027302 52 AKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGA 96 (225)
Q Consensus 52 aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs 96 (225)
-.|+||.+-|--+| .+++.-.++|...|..|.+||-.+.+
T Consensus 33 L~r~reLavqaan~-----t~~~~dr~ai~~E~~~l~~ei~~ia~ 72 (395)
T d1io1a_ 33 LQRVRELAVQSANS-----TNSQSDLDSIQAEITQRLNEIDRVSG 72 (395)
T ss_dssp HHHHHHHHHHHTCT-----TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999 88999999999888888888877653
No 4
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=30.10 E-value=87 Score=22.21 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHhhh
Q 027302 107 SLRDGFIVQMFELNDKIRTFHKSIAF 132 (225)
Q Consensus 107 ~~r~~Fis~m~~LN~kIR~FQq~i~~ 132 (225)
..|..|-..+...|..|+.|=-.+--
T Consensus 109 ~aR~~YN~~V~~yN~~i~~FP~~lvA 134 (149)
T d2etda1 109 VARRDYNEAVKKYNTAIKKFPGVIFA 134 (149)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 46788999999999999999766543
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.70 E-value=89 Score=21.22 Aligned_cols=78 Identities=15% Similarity=0.279 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHH--Hhccceeeeecch-----------------------------h
Q 027302 27 RVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQ--ELKGYEVELALNN-----------------------------T 75 (225)
Q Consensus 27 rv~~Lkkri~~l~~e~daanaElE~aKr~kE~~Eq--eL~G~evqlaln~-----------------------------~ 75 (225)
.+..|+.+|+.+++.++.-+.-+.+...++++.+. +-.|.++-+-|.. .
T Consensus 9 ~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE~~~~e 88 (133)
T d1fxkc_ 9 QLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFED 88 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeeeeecHHH
Confidence 34556777777777766666555555555555542 1123344333222 3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q 027302 76 AFQALESRISLIHNEISTVGAEVEALKKE 104 (225)
Q Consensus 76 siq~LEAris~iQ~EiS~vGs~ldaLK~~ 104 (225)
++.-|+.||..++..+.....++..++..
T Consensus 89 A~~~l~~ri~~l~~~~~~l~~~~~~~~~~ 117 (133)
T d1fxkc_ 89 AMESIKSQKNELESTLQKMGENLRAITDI 117 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777776666666655544
No 6
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.76 E-value=94 Score=21.14 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhhh
Q 027302 28 VVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEISTVGAEVEALKKEQES 107 (225)
Q Consensus 28 v~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~~ 107 (225)
|...+++.+..+.++|++...++..++-+... + -+ ..+..+-++++..+..-..
T Consensus 103 ~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~~~------------------~-~~-------~kl~~ae~~~~~a~~~fe~ 156 (200)
T d1i4da_ 103 TLMTVKQYEAARLEYDAYRTDLEELSLGPRDA------------------G-TR-------GRLESAQATFQAHRDKYEK 156 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhccccc------------------c-hh-------hhHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777666554332110 0 01 1233344455555555555
Q ss_pred hhhHHHHHHHHhhH-HHHHHHH
Q 027302 108 LRDGFIVQMFELND-KIRTFHK 128 (225)
Q Consensus 108 ~r~~Fis~m~~LN~-kIR~FQq 128 (225)
.+..+...|..++. +++.|..
T Consensus 157 ~~~~~~~~l~~l~~~r~~~~~~ 178 (200)
T d1i4da_ 157 LRGDVAIKLKFLEENKIKVMHK 178 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHH
Confidence 55666666666654 4444443
No 7
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.37 E-value=76 Score=19.62 Aligned_cols=58 Identities=9% Similarity=0.166 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhHHHHHHhhh-------hhhhHHHHHHHHhhHHHHHHHHHh
Q 027302 73 NNTAFQALESRISLIHNEISTVGAEVEALKKEQE-------SLRDGFIVQMFELNDKIRTFHKSI 130 (225)
Q Consensus 73 n~~siq~LEAris~iQ~EiS~vGs~ldaLK~~~~-------~~r~~Fis~m~~LN~kIR~FQq~i 130 (225)
+..+++.+-.+-..++.+|......++.|...+. ...+.--..+.+||.+-..+...+
T Consensus 29 d~~~~~~ll~~h~~~~~~i~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~~~~l~~~w~~L~~~~ 93 (101)
T d1u5pa2 29 DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLA 93 (101)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555554443 334555666777777666665544
No 8
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=21.85 E-value=1.1e+02 Score=20.38 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=10.8
Q ss_pred HHHHHHHhhhhhhh
Q 027302 80 LESRISLIHNEIST 93 (225)
Q Consensus 80 LEAris~iQ~EiS~ 93 (225)
+|+||..|++-++.
T Consensus 56 ~e~rI~eLe~~L~~ 69 (75)
T d2f23a1 56 IEARIDSLEDILSR 69 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 78888888877664
No 9
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.95 E-value=1.3e+02 Score=21.61 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhHHH
Q 027302 32 KKRIEKLRLELEAENFEREEAKQLKET 58 (225)
Q Consensus 32 kkri~~l~~e~daanaElE~aKr~kE~ 58 (225)
-+||.+|..+...+..|++.+-+-++.
T Consensus 90 ~~~i~~Le~E~~~~~~el~~~v~e~e~ 116 (129)
T d1ykhb1 90 LRKIDMLQKKLVEVEDEKIEAIKKKEK 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999877665443
No 10
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.93 E-value=1.4e+02 Score=21.16 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhh
Q 027302 12 TLIRDFASEKSQGERRVVGLKKRIEKLRLELEAENFEREEAKQLKETIEQELKGYEVELALNNTAFQALESRISLIHNEI 91 (225)
Q Consensus 12 slIRDFa~EkS~GErrv~~Lkkri~~l~~e~daanaElE~aKr~kE~~EqeL~G~evqlaln~~siq~LEAris~iQ~Ei 91 (225)
.++..+..-...-++....++.-...+..++.....+++.+|+--..+..++.- +.......+...
T Consensus 97 ~i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~--------------~~~~~~~~~~~~ 162 (288)
T d2efla1 97 QIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADR--------------AQQYFEKMDADI 162 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhhcccc
Q ss_pred hhhhhhHHHHHHhhh-------hhhhHHHHHHHHhhHHHHHHHHH
Q 027302 92 STVGAEVEALKKEQE-------SLRDGFIVQMFELNDKIRTFHKS 129 (225)
Q Consensus 92 S~vGs~ldaLK~~~~-------~~r~~Fis~m~~LN~kIR~FQq~ 129 (225)
+..+.+++-++.... ..+..+...+..+|.-+..|..+
T Consensus 163 ~~~~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~ 207 (288)
T d2efla1 163 NVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHT 207 (288)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!