BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027303
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ICJ|A Chain A, The Crystal Structure Of Human Isopentenyl Diphophate
Isomerase
pdb|2ICK|A Chain A, Human Isopentenyl Diphophate Isomerase Complexed With
Substrate Analog
Length = 233
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/212 (57%), Positives = 161/212 (75%), Gaps = 5/212 (2%)
Query: 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LLLQQRS K+TFP
Sbjct: 27 CILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 85
Query: 73 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
+TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +E L RI YKA
Sbjct: 86 CFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQ 145
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
SDG WGEHE+DY+L + ++V++NP+P+E+ Y YV++E+LKELL+KA +GE +K++PWF
Sbjct: 146 SDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWF 203
Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+++ FLFKWWD+L LN+ +D + I+++
Sbjct: 204 KIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 233
>pdb|2DHO|A Chain A, Crystal Structure Of Human Ipp Isomerase I In Space Group
P212121
Length = 235
Score = 231 bits (588), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/212 (57%), Positives = 160/212 (75%), Gaps = 5/212 (2%)
Query: 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LLLQQRS K+TFP
Sbjct: 29 CILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 87
Query: 73 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
+TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +E L RI YKA
Sbjct: 88 CFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQ 147
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
SDG WGEHE+DY+L + +V++NP+P+E+ Y YV++E+LKELL+KA +GE +K++PWF
Sbjct: 148 SDGIWGEHEIDYILLVRMNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWF 205
Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+++ FLFKWWD+L LN+ +D + I+++
Sbjct: 206 KIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 235
>pdb|2I6K|A Chain A, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
pdb|2I6K|B Chain B, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
Length = 235
Score = 229 bits (584), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 121/213 (56%), Positives = 160/213 (75%), Gaps = 5/213 (2%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
+ CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LLLQQRS K+TF
Sbjct: 27 EXCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITF 85
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
P +TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +E L RI YK
Sbjct: 86 PGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYK 145
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
A SDG WGEHE+DY+L + +V++NP+P+E+ Y YV++E+LKELL+KA +GE +K++P
Sbjct: 146 AQSDGIWGEHEIDYILLVRXNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITP 203
Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHK 223
WF+++ FLFKWWD+L LN+ +D + I++
Sbjct: 204 WFKIIAATFLFKWWDNLNH--LNQFVDHEKIYR 234
>pdb|2PNY|A Chain A, Structure Of Human Isopentenyl-Diphosphate Delta-Isomerase
2
Length = 246
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 146/211 (69%), Gaps = 5/211 (2%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
I+VDEND+V+G + K NCHL E IE LLHRAFSV LFN+K +L+QQRS TKVTFP
Sbjct: 41 IVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGY 99
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
+T++C SHPLY +EL E++A+GVR AAQR+L ELGI E + ++ + +KA S
Sbjct: 100 FTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKS 159
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
D WGEHE+ YLL + ++V++NP+P E Y+++E+L ELL + GE +K++PW R
Sbjct: 160 DRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGE--VKVTPWLR 217
Query: 194 LVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+ + FL++WW HL+ T +++ IH++
Sbjct: 218 TIAERFLYRWWPHLDDVT--PFVELHKIHRV 246
>pdb|1X84|A Chain A, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
pdb|1X84|B Chain B, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 23/185 (12%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K +P V
Sbjct: 7 ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
WTN+ C HP ES +A R+ ELG+ E P + P R Y+A
Sbjct: 62 WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YRATD 108
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
E+E+ + ++ N DEV +Y++ + L ++L DA SPW
Sbjct: 109 PSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
+ N
Sbjct: 164 MQATN 168
>pdb|1NFS|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFS|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFZ|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1NFZ|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1PPV|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPV|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PVF|A Chain A, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|1PVF|B Chain B, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|2VNP|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNP|B Chain B, Monoclinic Form Of Idi-1
pdb|2VNQ|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNQ|B Chain B, Monoclinic Form Of Idi-1
Length = 183
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 23/185 (12%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K +P V
Sbjct: 7 ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
WTN+ C HP ES +A R+ ELG+ E P + P R Y+A
Sbjct: 62 WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YRATD 108
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
E+E+ + ++ N DEV +Y++ + L ++L DA SPW
Sbjct: 109 PSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
+ N
Sbjct: 164 MQATN 168
>pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 23/185 (12%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K +P V
Sbjct: 7 ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
WTN+ C HP ES +A R+ ELG+ E P + P R Y+A
Sbjct: 62 WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YRATD 108
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
E+E+ + ++ N DEV +Y++ + L ++L DA SPW
Sbjct: 109 PSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
+ N
Sbjct: 164 MQATN 168
>pdb|1X83|A Chain A, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
pdb|1X83|B Chain B, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K +P V
Sbjct: 7 ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
WTN+ C HP ES +A R+ ELG+ E P + P R PS
Sbjct: 62 WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRFRATDPS 110
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
E+E+ + ++ N DEV +Y++ + L ++L DA SPW
Sbjct: 111 GIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
+ N
Sbjct: 164 MQATN 168
>pdb|2G73|A Chain A, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G73|B Chain B, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G74|A Chain A, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2G74|B Chain B, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2B2K|A Chain A, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
pdb|2B2K|B Chain B, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
Length = 183
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K +P V
Sbjct: 7 ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
WTN+ C HP ES +A R+ ELG+ E P + P R PS
Sbjct: 62 WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRFRATDPS 110
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
E+E+ + ++ N DEV +Y++ + L ++L DA SPW
Sbjct: 111 GIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
+ N
Sbjct: 164 MQATN 168
>pdb|1R67|A Chain A, Y104a Mutant Of E.coli Ipp Isomerase
Length = 190
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K +P V
Sbjct: 7 ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
WTN+ C HP ES +A R+ ELG+ E P + P R PS
Sbjct: 62 WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRARATDPS 110
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
E+E+ + ++ N DEV +Y++ + L ++L DA SPW
Sbjct: 111 GIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSPWMV 163
Query: 194 LVVDN 198
+ N
Sbjct: 164 MQATN 168
>pdb|1I9A|A Chain A, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
pdb|1I9A|B Chain B, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
Length = 182
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 23/178 (12%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K +P V
Sbjct: 7 ILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV 61
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
WTN+ C HP ES +A R+ ELG+ E P + P R Y+A
Sbjct: 62 WTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YRATD 108
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW 191
E+E+ + ++ N DEV +Y++ + L ++L DA SPW
Sbjct: 109 PSGIVENEVCPVFAARTTSALQINDDEVXDYQWCD---LADVLHGIDATP--WAFSPW 161
>pdb|3HYQ|A Chain A, Crystal Structure Of Isopentenyl-Diphosphate
Delta-Isomerase From Salmonella Entericase
Length = 184
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 29/186 (15%)
Query: 9 TFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKV 68
T + +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 5 TEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSKK 59
Query: 69 TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL-GRI 127
+P VWTN+ C HP ++ E EE A R+ ELG V + + TP+
Sbjct: 60 AWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELG-----VEITDLTPVYPHF 105
Query: 128 LYKAPSDGKWGEHELDYLLFIVRDVSV-NPNPDEVAEYKYVNREQL-KELLRKADAGEEG 185
Y+A E+E+ +F R SV N +EV +Y++ + + K LL A
Sbjct: 106 SYRATDPNGIVENEV-CPVFAARATSVLQVNSEEVXDYQWSEFKSVWKSLLATPWA---- 160
Query: 186 LKLSPW 191
SPW
Sbjct: 161 --FSPW 164
>pdb|1HX3|A Chain A, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
pdb|1HX3|B Chain B, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
+ IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K +
Sbjct: 4 EHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAW 58
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
P VWTN+ HP ES +A R+ ELG+ E P + P R Y+
Sbjct: 59 PGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YR 105
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
A E+E+ + ++ N DEV +Y++ + L ++L DA SP
Sbjct: 106 ATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSP 160
Query: 191 WFRLVVDN 198
W + N
Sbjct: 161 WMVMQATN 168
>pdb|1Q54|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1Q54|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1OW2|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
pdb|1OW2|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
Length = 183
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
+ IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K +
Sbjct: 4 EHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAW 58
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
P VWTN+ HP ES +A R+ ELG+ E P + P R Y+
Sbjct: 59 PGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFR--YR 105
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
A E+E+ + ++ N DEV +Y++ + L ++L DA SP
Sbjct: 106 ATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDATP--WAFSP 160
Query: 191 WFRLVVDN 198
W + N
Sbjct: 161 WMVMQATN 168
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 106 LDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV-NPNPDEVAEY 164
LD L I A+ VP + I + P+ LD +L ++ SV E+
Sbjct: 44 LDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSG 103
Query: 165 KYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTL 212
K L + + E+G+ L+P+ L D L + W +L+ L
Sbjct: 104 KVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAIL 151
>pdb|1Q27|A Chain A, Nmr Solution Structure Of Dr0079: An Hypothetical Nudix
Protein From D. Radiodurans
pdb|2O5F|A Chain A, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
At 1.9 Angstrom Resolution
pdb|2O5F|B Chain B, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
At 1.9 Angstrom Resolution
Length = 171
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 11 DRCILVDENDRVVGHENKYNCHLM-EKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 69
+R LV+E D VVG + + L E++ R + FL NS+ +L + +RS +K
Sbjct: 7 ERLDLVNERDEVVGQILRTDPALRWERV-------RVVNAFLRNSQGQLWIPRRSPSKSL 59
Query: 70 FP 71
FP
Sbjct: 60 FP 61
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 180 DAGEEGLKL-SPWFRLVVDNFLFKWWDHLEKGTLNEVID 217
DA EE K+ +P FR +DN + W+DHL +++V+D
Sbjct: 627 DAMEEIKKIFTPEFRNRLDNII--WFDHLSTDVIHQVVD 663
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 28/152 (18%)
Query: 39 SLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVR 98
+ NL H A+ + E R GT V F + + + R ELIEE +
Sbjct: 407 AANLYHLAYEHV---ERPEGKFSGRKGTWVGFTV---DEVIQEAVKRARELIEEKNPALS 460
Query: 99 NAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNP 158
+ + ++ +++GI A + +++P +I++ +W D L F
Sbjct: 461 DEEKAEVAEKVGIGAIRYNLIKYSPDKKIIF------RWE----DVLNF----------E 500
Query: 159 DEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
E A Y + +LRKA+ EEG+K+ P
Sbjct: 501 GESAPYIQYAHARCSSILRKAE--EEGIKVDP 530
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 94 ALGVRNAAQRKL-----LDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLL 146
A+GVR+ + K+ L E GI ++ V++ ++Y DG E E DY++
Sbjct: 49 AIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVI 106
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 55 KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQR 103
++ + L++R GT W + SH Y E++ NAL + R
Sbjct: 163 QFRVWLKERYGTLEALNKAWNTSFWSHTFYDWDEIVAPNALSEEWSGNR 211
>pdb|1ZSX|A Chain A, Crystal Structure Of Human Potassium Channel Kv
Beta-Subunit (Kcnab2)
Length = 347
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 24/138 (17%)
Query: 62 QRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 121
+RS +T + W + +IE G++ + +R L+ + + + P D
Sbjct: 96 RRSSLVITTKIFWGGKAETERGLSRKHIIE----GLKASLERLQLEYVDVVFANRP-DPN 150
Query: 122 TPL-------------GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN 168
TP+ G +Y S +W E+ + R ++ P E AEY
Sbjct: 151 TPMEETVRAMTHVINQGMAMYWGTS--RWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQ 208
Query: 169 RE----QLKELLRKADAG 182
RE QL EL K G
Sbjct: 209 REKVEVQLPELFHKIGVG 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,982,235
Number of Sequences: 62578
Number of extensions: 295147
Number of successful extensions: 732
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 705
Number of HSP's gapped (non-prelim): 34
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)