BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027303
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48964|IDI1_CAMAC Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata
GN=IPI1 PE=2 SV=1
Length = 235
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/214 (89%), Positives = 203/214 (94%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
D+CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 21 DKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTF 80
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
PLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLLDELGI AEDVPVD+F PLGRILYK
Sbjct: 81 PLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYK 140
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
APSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KYV R+QLKELLRKADAGEEGLKLSP
Sbjct: 141 APSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVTRDQLKELLRKADAGEEGLKLSP 200
Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
WFRLVVDNFLFKWWDH+EKGT++E DMK+IHKL
Sbjct: 201 WFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234
>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic
OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1
Length = 284
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/214 (89%), Positives = 202/214 (94%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
D CILVDE DRVVGH++KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 71 DECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTF 130
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
PLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYK
Sbjct: 131 PLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYK 190
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
APSDGKWGEHELDYLLFIVRDV V PNPDEVAE KYV+RE+LKEL++KADAGEEGLKLSP
Sbjct: 191 APSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSP 250
Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
WFRLVVDNFL KWWDH+EKGTL E IDMKTIHKL
Sbjct: 251 WFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284
>sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri
GN=IPI2 PE=3 SV=2
Length = 286
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/214 (88%), Positives = 203/214 (94%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
D CILVDE DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTF
Sbjct: 73 DECILVDEVDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTF 132
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
PLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYK
Sbjct: 133 PLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYK 192
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
APSDGKWGEHELDYLLFIVRDV+V+PNPDEVAE KYVNREQLKELL+KADAGEEGLKLSP
Sbjct: 193 APSDGKWGEHELDYLLFIVRDVAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLKLSP 252
Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
WFRLVVDNFL KWWDH+EKGTL+E +DMK+IHKL
Sbjct: 253 WFRLVVDNFLPKWWDHVEKGTLSEAVDMKSIHKL 286
>sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata
GN=IPI2 PE=2 SV=1
Length = 309
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/215 (86%), Positives = 202/215 (93%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
D CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 95 DECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTF 154
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
PLVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYK
Sbjct: 155 PLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYK 214
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
APSDGKWGEHELDYLLFI+RDV+V+PNPDEVA+ KYVN++QLK+LLRK DAGEEGLKLSP
Sbjct: 215 APSDGKWGEHELDYLLFIIRDVNVHPNPDEVADVKYVNQDQLKDLLRKVDAGEEGLKLSP 274
Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225
WFRLVV+NFLFKWWDH+EKGTL + DMKTIHKLT
Sbjct: 275 WFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309
>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic
OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3
Length = 291
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/214 (86%), Positives = 199/214 (92%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
D CILVDENDRVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 78 DECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTF 137
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
PLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYK
Sbjct: 138 PLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYK 197
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
APSDGKWGEHE+DYLLFIVRDV + PNPDEVAE KYV+RE+LKEL++KADAG+E +KLSP
Sbjct: 198 APSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSP 257
Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
WFRLVVDNFL KWWDH+EKGT+ E DMKTIHKL
Sbjct: 258 WFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 291
>sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri
GN=IPI1 PE=2 SV=2
Length = 287
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/214 (86%), Positives = 201/214 (93%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
D CILVDEND+VVGHE+KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTF
Sbjct: 74 DECILVDENDKVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTF 133
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
PLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYK
Sbjct: 134 PLVWTNTCCSHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYK 193
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
APSDGKWGEHELDYLLFI+RDV+++PNPDEVAE KY+NR+ LKELLRKADA EEG+KLSP
Sbjct: 194 APSDGKWGEHELDYLLFIIRDVNLDPNPDEVAEVKYMNRDDLKELLRKADAEEEGVKLSP 253
Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
WFRLVVDNFLFKWWDH+EKG+L + DMKTIHKL
Sbjct: 254 WFRLVVDNFLFKWWDHVEKGSLKDAADMKTIHKL 287
>sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana
GN=IPI2 PE=3 SV=1
Length = 290
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/214 (87%), Positives = 200/214 (93%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
D CILVDE D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+ELLLQQRS TKVTF
Sbjct: 77 DECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKFELLLQQRSATKVTF 136
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
PLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTP+ R+LYK
Sbjct: 137 PLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYK 196
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
APSDGKWGEHELDYLLFIVRDV ++PNPDEVA+ KYVNREQLKELLRKADAGEEGLKLSP
Sbjct: 197 APSDGKWGEHELDYLLFIVRDVGIHPNPDEVADIKYVNREQLKELLRKADAGEEGLKLSP 256
Query: 191 WFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
WFRLVVDNFL KWWDH+EKGTL+E +DMKTIH L
Sbjct: 257 WFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290
>sp|Q1LZ95|IDI1_BOVIN Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1
PE=2 SV=2
Length = 227
Score = 248 bits (633), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/212 (57%), Positives = 159/212 (75%), Gaps = 5/212 (2%)
Query: 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
CILVDENDR +G E K NCHL E IE LLHRAFSVFLFN++ +LLLQQRS K+TFP
Sbjct: 21 CILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 79
Query: 73 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
+TNTCCSHPL SEL E +A+GVR AAQR+L ELGI E+VP +E L RI YKA
Sbjct: 80 CFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQ 139
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
SD WGEHE+DY+L + ++V++NP+P+E+ Y YV +E+L+EL+ KA GE +K++PWF
Sbjct: 140 SDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCYVTKEELEELIGKAAHGE--IKITPWF 197
Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+++ D FLFKWWD+L + LN +D + IH++
Sbjct: 198 QIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227
>sp|O35586|IDI1_MESAU Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus
GN=IDI1 PE=2 SV=1
Length = 227
Score = 244 bits (624), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/212 (55%), Positives = 162/212 (76%), Gaps = 5/212 (2%)
Query: 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
CIL+DEND +G + K NCHL E I+ LLHRAFSVFLFN++ +LLLQQRS K+TFP
Sbjct: 21 CILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 79
Query: 73 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
+TN+CCSHPL EL E +A+GV+ AAQR+L ELGI E+V +E L RI YKA
Sbjct: 80 CFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYKAQ 139
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
SDG WGEHE+DY+LF+ ++V++NP+P+E+ Y YV++E+LKEL++KA +GE +KL+PWF
Sbjct: 140 SDGIWGEHEIDYILFLKKNVTLNPDPNEIKSYCYVSKEELKELVKKAASGE--VKLTPWF 197
Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+++VD FLFKWWD+L L++ +D + IH++
Sbjct: 198 KIIVDTFLFKWWDNL--NHLSQFVDHEKIHRM 227
>sp|P58044|IDI1_MOUSE Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1
PE=2 SV=1
Length = 227
Score = 242 bits (617), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 116/212 (54%), Positives = 161/212 (75%), Gaps = 5/212 (2%)
Query: 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
CIL+DEND +G + K NCHL E I+ LLHRAFSVFLFN++ +LLLQQRS K+TFP
Sbjct: 21 CILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 79
Query: 73 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
+TN+CCSHPL EL E NA+GV+ AA+R+L ELGI E+V ++E L RI YKA
Sbjct: 80 CFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQ 139
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
SDG WGEHE+DY+LF+ ++V++NP+P+E+ Y YV++E+++E+L+KA +GE +KL+PWF
Sbjct: 140 SDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCYVSKEEVREILKKAASGE--IKLTPWF 197
Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+++ D FLFKWWD+L L+ +D + IH+L
Sbjct: 198 KIIADTFLFKWWDNL--NHLSPFVDHEKIHRL 227
>sp|O35760|IDI1_RAT Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus
GN=Idi1 PE=2 SV=2
Length = 227
Score = 239 bits (611), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 115/212 (54%), Positives = 159/212 (75%), Gaps = 5/212 (2%)
Query: 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
CIL+DEND +G + K NCHL E I+ L+HRAFSVFLFN++ +LLLQQRS K+TFP
Sbjct: 21 CILIDENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENKLLLQQRSDAKITFPG 79
Query: 73 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
+TN+CCSHPL EL E +A+GV+ AAQR+L ELGI E+V ++E L RI YKA
Sbjct: 80 CFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYKAQ 139
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
SDG WGEHE+DY+LF+ ++V++NP+P+E+ Y YV++E+LKE+L+K GE +KL+PWF
Sbjct: 140 SDGIWGEHEIDYILFLRKNVTLNPDPNEIKSYCYVSKEELKEILKKEARGE--IKLTPWF 197
Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+++ D FLFKWWD+L L+ +D + IH++
Sbjct: 198 KIIADAFLFKWWDNL--NHLSPFVDHEKIHRM 227
>sp|Q4R4W5|IDI1_MACFA Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis
GN=IDI1 PE=2 SV=2
Length = 227
Score = 233 bits (595), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 122/212 (57%), Positives = 161/212 (75%), Gaps = 5/212 (2%)
Query: 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LLLQQRS K+TFP
Sbjct: 21 CILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 79
Query: 73 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
+TNTCCSHPL EL E +ALGVR AAQR+L ELGI E+VP +E L RI YKA
Sbjct: 80 CFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQ 139
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
SDG WGEHE+DY+LF+ ++V++NP+P+E+ + YV++E+LKELL+KA GE +K++PWF
Sbjct: 140 SDGIWGEHEIDYILFVRKNVTLNPDPNEIKSFCYVSKEELKELLKKAANGE--IKITPWF 197
Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+++ + FLFKWWD+L LN+ +D + IH++
Sbjct: 198 QIIAETFLFKWWDNLNH--LNQFVDHEKIHRM 227
>sp|Q13907|IDI1_HUMAN Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1
PE=1 SV=2
Length = 227
Score = 232 bits (591), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/212 (57%), Positives = 161/212 (75%), Gaps = 5/212 (2%)
Query: 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LLLQQRS K+TFP
Sbjct: 21 CILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPG 79
Query: 73 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
+TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +E L RI YKA
Sbjct: 80 CFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQ 139
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
SDG WGEHE+DY+L + ++V++NP+P+E+ Y YV++E+LKELL+KA +GE +K++PWF
Sbjct: 140 SDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWF 197
Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+++ FLFKWWD+L LN+ +D + I+++
Sbjct: 198 KIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 227
>sp|Q5R8R6|IDI1_PONAB Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1
PE=2 SV=2
Length = 227
Score = 229 bits (584), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/212 (56%), Positives = 160/212 (75%), Gaps = 5/212 (2%)
Query: 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LLLQQRS K+T P
Sbjct: 21 CILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITLPG 79
Query: 73 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
+TNTCCSHPL EL E +ALGVR AAQR+L ELGI E+VP +E L RI YKA
Sbjct: 80 CFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQ 139
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
SDG WGEHE+DY+L + ++V++NP+P+E+ Y YV++E+LKELL+KA +GE +K++PWF
Sbjct: 140 SDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWF 197
Query: 193 RLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+++ + FLFKWWD+L LN+ +D + I+++
Sbjct: 198 KIIAETFLFKWWDNLNH--LNQFVDHEKIYRI 227
>sp|Q10132|IDI1_SCHPO Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=idi1 PE=2 SV=2
Length = 229
Score = 204 bits (519), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 133/203 (65%), Gaps = 12/203 (5%)
Query: 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
CI+VDEND + + K CHLME I LLHRAFS+F+F+ + LLLQQR+ K+TFP
Sbjct: 24 CIVVDENDVPLRYGTKKECHLMENINK-GLLHRAFSMFIFDEQNRLLLQQRAEEKITFPS 82
Query: 73 VWTNTCCSHPLYRESE---LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 129
+WTNTCCSHPL E + E GV+NAAQRKL ELGI A+ +P D+F L RI Y
Sbjct: 83 LWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHY 142
Query: 130 KAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLS 189
APS G WGEHE+DY+LF V ++ NP+EV YKYV E+LKE+ G +
Sbjct: 143 LAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYG-----FT 197
Query: 190 PWFRLVVDNFLFKWW---DHLEK 209
PWF+L+ ++F+FKWW DH K
Sbjct: 198 PWFKLICEHFMFKWWQDVDHASK 220
>sp|O42641|IDI1_PHARH Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI
PE=3 SV=1
Length = 251
Score = 202 bits (515), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 139/222 (62%), Gaps = 16/222 (7%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESL-NLLHRAFSVFLFN-SKYELLLQQRSGTKV 68
+RCILV+ +D G +K CHLM I + +LLHRAFSVFLF S LLLQ+R+ K+
Sbjct: 32 ERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGALLLQRRADEKI 91
Query: 69 TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 128
TFP +WTNTCCSHPL + E+ EEN +GVR AA RKL ELG+ P D FT L RI
Sbjct: 92 TFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIH 151
Query: 129 YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKL 188
Y APSDG WGEHE+DY+LF NP+EV++ +YV + +L+ + +E
Sbjct: 152 YLAPSDGLWGEHEIDYILFSTTPTEHTGNPNEVSDTRYVTKPELQAMFE-----DESNSF 206
Query: 189 SPWFRLVVDNFLFKWWDHL-----EKGTLNEVIDMKTIHKLT 225
+PWF+L+ +FLF WWD L EKG +D K++ L+
Sbjct: 207 TPWFKLIARDFLFGWWDQLLARRNEKGE----VDAKSLEDLS 244
>sp|Q8BFZ6|IDI2_MOUSE Isopentenyl-diphosphate Delta-isomerase 2 OS=Mus musculus GN=Idi2
PE=2 SV=1
Length = 227
Score = 196 bits (499), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 135/196 (68%), Gaps = 3/196 (1%)
Query: 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPL 72
CI++D+ D+++G + K NCHLME I LLHRAFSV LFN K ELL+QQR+ K TFP
Sbjct: 21 CIVIDKQDQIIGADTKKNCHLMENINK-GLLHRAFSVVLFNMKNELLVQQRADAKYTFPG 79
Query: 73 VWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132
+T++C SHPLY EL E++ALGVR AA R+L ELGI + + + + + R +K
Sbjct: 80 HFTDSCSSHPLYVPEELEEKDALGVRRAALRRLQAELGISQDQISIKDIIFMTRKYHKCQ 139
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
SD WGEHE+ YLL + +D+ +NP+ EV Y++++ ++ELL + GEE K++PWF
Sbjct: 140 SDAIWGEHEIGYLLLVRKDLMLNPDTREVRRCCYMSQKDVQELLDREARGEE--KITPWF 197
Query: 193 RLVVDNFLFKWWDHLE 208
R +V++FLF WW HLE
Sbjct: 198 RSMVEDFLFSWWPHLE 213
>sp|Q9BXS1|IDI2_HUMAN Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2
PE=1 SV=1
Length = 227
Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 146/211 (69%), Gaps = 5/211 (2%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
I+VDEND+V+G + K NCHL E IE LLHRAFSV LFN+K +L+QQRS TKVTFP
Sbjct: 22 IVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGY 80
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
+T++C SHPLY +EL E++A+GVR AAQR+L ELGI E + ++ + +KA S
Sbjct: 81 FTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKS 140
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
D WGEHE+ YLL + ++V++NP+P E Y+++E+L ELL + GE +K++PW R
Sbjct: 141 DRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGE--VKVTPWLR 198
Query: 194 LVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+ + FL++WW HL+ T +++ IH++
Sbjct: 199 TIAERFLYRWWPHLDDVT--PFVELHKIHRV 227
>sp|Q9NH02|IDI_DICDI Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum
GN=ipi PE=2 SV=1
Length = 239
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 144/201 (71%), Gaps = 7/201 (3%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
+ CI+VD +D+ + +K HLM I + LLHRAFS+FLFN + +LLLQQR+ K+TF
Sbjct: 26 EECIVVDNDDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKLLLQQRALEKITF 84
Query: 71 PLVWTNTCCSHPLY-RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 129
P WTNT CSHPL+ SEL+EENA GV+ AA+RKL ELG+ + V +D+FT + +I Y
Sbjct: 85 PGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVNIDDFTFMTKIHY 144
Query: 130 KAPS--DGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGL 186
K+ S D +WGEHE+D++L + +D +++N P+EV +YKYV++E+L +L + D G+ +
Sbjct: 145 KSESKEDPQWGEHEIDHILIMQKDGITINAEPNEVMDYKYVSQEELDQLFKDEDEGK--V 202
Query: 187 KLSPWFRLVVDNFLFKWWDHL 207
K++PWFRL+ N L WW++L
Sbjct: 203 KVTPWFRLIALNHLKPWWNNL 223
>sp|P15496|IDI1_YEAST Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=IDI1 PE=1 SV=2
Length = 288
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 142/224 (63%), Gaps = 18/224 (8%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
+ CI++D +D +G K CHLME IE LLHRAFSVF+FN + ELLLQQR+ K+TF
Sbjct: 72 ENCIVLDWDDNAIGAGTKKVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITF 130
Query: 71 PLVWTNTCCSHPLYRESEL-----IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPL 124
P +WTNTCCSHPL + EL +++ G AA RKL ELGI ++ +F L
Sbjct: 131 PDLWTNTCCSHPLCIDDELGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFL 190
Query: 125 GRILYKAPSDGKWGEHELDYLLF----IVRDVSVNPNPDEVAEYKYVNREQLKELLRKAD 180
RI Y APS+ WGEHE+DY+LF +++VNPN +EV ++K+V+ LK +
Sbjct: 191 NRIHYMAPSNEPWGEHEIDYILFYKINAKENLTVNPNVNEVRDFKWVSPNDLKTMF---- 246
Query: 181 AGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
+ K +PWF+++ +N+LF WW+ L+ L+EV + + IH++
Sbjct: 247 -ADPSYKFTPWFKIICENYLFNWWEQLDD--LSEVENDRQIHRM 287
>sp|Q5YYB6|IDI_NOCFA Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica
(strain IFM 10152) GN=idi PE=3 SV=1
Length = 175
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 92/185 (49%), Gaps = 28/185 (15%)
Query: 15 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 74
LVDE R VG C + E LHRAFSV LF++ +LLQQR+ K FPL+W
Sbjct: 5 LVDEAGRAVG-----ACPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLW 59
Query: 75 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 134
NTCC HP ES V AA +L +ELG+ A T +G Y+A +D
Sbjct: 60 ANTCCGHPAPGES---------VEAAAATRLAEELGVAA------GLTEVGVFRYRA-AD 103
Query: 135 GKWG--EHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
G EHE D++L D + +P+P EVA ++V +++ L E +PW
Sbjct: 104 TATGRVEHEWDHVLIGTLDTTPHPDPAEVANLRWVRPAEVRAKL-----AAEPAAYTPWL 158
Query: 193 RLVVD 197
V++
Sbjct: 159 AEVLE 163
>sp|A8GDW2|IDI_SERP5 Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans
(strain 568) GN=idi PE=3 SV=1
Length = 179
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 21/161 (13%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
ILVD +D +G ++K H LLHRAFS+F+F+S+ LLLQQR+ +K +
Sbjct: 6 ILVDADDNAIGSQSKTRVHQQ------GLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGL 59
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
WTN+CC HP + ES L AAQR+L +E+G AE V FT Y+A
Sbjct: 60 WTNSCCGHPRWGESTLA---------AAQRRLQEEMGFSAELQQVSSFT------YQAAV 104
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE 174
G EHE D++ + D P+E + + + +QL +
Sbjct: 105 PGDLIEHEFDHIYVGLFDGKPQGAPEEAHSWSWTDIQQLTD 145
>sp|Q6D3F5|IDI_ERWCT Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=idi PE=3 SV=1
Length = 179
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 28/191 (14%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
+LVDEND+ G K H+ + LHRA +V++FNS+ +LLLQQR+ K +
Sbjct: 7 VLVDENDKPTGVMEKQEAHVKGE------LHRAITVYIFNSRQQLLLQQRAEEKYHSGGL 60
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYKAP 132
W+NTCCSHP E L AA R+L +E+G+ CA TP+ + Y+
Sbjct: 61 WSNTCCSHPAPGEETL---------QAAHRRLYEEMGLRCA-------LTPMFTLTYRLQ 104
Query: 133 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
D EHEL ++ F V D NPDEV+ Y+Y + + E+ ++ E + + WF
Sbjct: 105 LDNGLIEHELGHVYFGVTDDVPQINPDEVSSYEY---QSIDEITQRMMMTPE--QFTAWF 159
Query: 193 RLVVDNFLFKW 203
+L W
Sbjct: 160 QLTFARIPDYW 170
>sp|B1VTW2|IDI_STRGG Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces griseus
subsp. griseus (strain JCM 4626 / NBRC 13350) GN=idi
PE=3 SV=1
Length = 197
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 85/185 (45%), Gaps = 29/185 (15%)
Query: 15 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 74
LVDEN +G K H ++ LHRAFSVFLF+ + LLLQ+R+ K P VW
Sbjct: 24 LVDENGTTIGTAEKLAAH-----QAPGQLHRAFSVFLFDEQGRLLLQRRALGKYHSPGVW 78
Query: 75 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 134
+NTCC HP E+ AA R+ +ELG+ G + Y P D
Sbjct: 79 SNTCCGHPYPGEAPFA---------AAARRTHEELGLSP-----SLLAEAGTVRYNHP-D 123
Query: 135 GKWG--EHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
G E E ++L + + P+P+EV E +V +L E KA S WF
Sbjct: 124 PASGLVEQEFNHLFVGLAQTAPKPDPEEVGETAFVTAAELAERHAKA-------PFSAWF 176
Query: 193 RLVVD 197
V+D
Sbjct: 177 MTVLD 181
>sp|A9AST0|IDI_BURM1 Isopentenyl-diphosphate Delta-isomerase OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=idi PE=3 SV=1
Length = 176
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 26/188 (13%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
+R ILVD +DR +G K H LLHRAFS+F+F+S LLLQQR+ K
Sbjct: 3 ERLILVDTDDRPIGICEKMRAH------HEGLLHRAFSIFVFDSAGRLLLQQRALNKYHS 56
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
+W+NTCC HP RE+ + +A +R+L +E+G E PVD ++Y+
Sbjct: 57 GGLWSNTCCGHPRPREA---------LPDAVRRRLGEEMGFACELRPVDA------LVYR 101
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
A + EHE ++ D +V P+ EVA +++++ L E + +E +
Sbjct: 102 ARFENDLIEHEFVHIHVGRFDGTVAPDFAEVAAWRWIDVPTLLEWM-----ADEPSAFTV 156
Query: 191 WFRLVVDN 198
WF +++
Sbjct: 157 WFHCMIER 164
>sp|Q7N1V4|IDI1_PHOLL Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi1 PE=3
SV=1
Length = 176
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 23/180 (12%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
+LVDEND VG NK + HL + + LHRAFS F+ NSK E+ +QQR+ +K+ +P
Sbjct: 5 VLVDENDNRVGCINKIDAHL-----NGDHLHRAFSCFIINSKNEVYIQQRAQSKLLWPGY 59
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
W+N+ CSHP E + +A R+ +ELGI + P L + YK
Sbjct: 60 WSNSYCSHPRPDEE---------ISHAVMRRAEEELGIVINEEP----KFLYKFQYKEKY 106
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
EHEL ++ + D NP EV+ ++N + ++E + + +PWF+
Sbjct: 107 KDVGYEHELCHVFVVFTDTPPTENPKEVSAGFFINIKDVQEYIHNNEEF-----CTPWFK 161
>sp|Q9X7Q6|IDI_STRCO Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=idi PE=3 SV=1
Length = 197
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 86/185 (46%), Gaps = 29/185 (15%)
Query: 15 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 74
LVDEN +G K + H + LHRAFSVFLF+ + LL+QQR+ K P VW
Sbjct: 24 LVDENGVTIGTAEKLSAH-----QPPGRLHRAFSVFLFDERGRLLIQQRALGKYHSPGVW 78
Query: 75 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 134
+NTCC HP E+ AA R+ +ELG+ G + Y P D
Sbjct: 79 SNTCCGHPYPGEAPFA---------AAARRTFEELGVSP-----SLLAEAGTVRYNHP-D 123
Query: 135 GKWG--EHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 192
G E E ++L + + P+P+EVA +V+ +L E R A S WF
Sbjct: 124 PASGLVEQEYNHLFVGLVQAELRPDPEEVAGTAFVSPAELTE--RHAQD-----TFSAWF 176
Query: 193 RLVVD 197
V+D
Sbjct: 177 MTVLD 181
>sp|Q7N0A6|IDI2_PHOLL Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi2 PE=3
SV=1
Length = 177
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 26/189 (13%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
+LVD++D +G K + H +LHRAFS+F+F++K LLLQ+R+ TK +
Sbjct: 6 VLVDKHDNPIGSAGKADIH------QKGMLHRAFSIFVFDNKGNLLLQKRAATKYHSAGL 59
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
WTN+CC HP R E +E AA R+L +E+G D P+ + + +Y A
Sbjct: 60 WTNSCCGHP--RVGEALEA-------AAHRRLGEEMGF---DCPLKKVSSF---IYHAIL 104
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
E+E D++ D N DEV++YK+VN +L+ L+ A + WF+
Sbjct: 105 PNNLIEYEYDHVFIGRFDKEPIINLDEVSDYKWVNLLKLRALINNAPD-----VYTVWFK 159
Query: 194 LVVDNFLFK 202
+++ ++
Sbjct: 160 KIINGLSYQ 168
>sp|A1WXH5|IDI_HALHL Isopentenyl-diphosphate Delta-isomerase OS=Halorhodospira halophila
(strain DSM 244 / SL1) GN=idi PE=3 SV=1
Length = 175
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 92/191 (48%), Gaps = 29/191 (15%)
Query: 10 FDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 69
+ ++VD + VG E K H LH AF VF+FN + ELLLQ+R+ +K
Sbjct: 1 MEHVVIVDPEGQRVGTEEKIRAHA-----DGGTLHLAFCVFVFNPRGELLLQRRADSKYH 55
Query: 70 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 129
F +W+NTCC HP R E GV AA+R+L +E G PV +FT Y
Sbjct: 56 FSGLWSNTCCGHP--RPGE-------GVTEAAERRLGEEFGFVTRLHPVAQFT------Y 100
Query: 130 KAPSDGKWGEHELDYL-LFIVRDVSVNPNPD--EVAEYKYVNREQLKELLRKADAGEEGL 186
A D G E +Y + I R + P PD E+ +++ L +AD + L
Sbjct: 101 HA-EDHHTGLAEYEYAHVLIGRAPTDQPAPDPLEIGAWEWA-----APLRIQADTQQYPL 154
Query: 187 KLSPWFRLVVD 197
+ +PWFR ++
Sbjct: 155 RYTPWFRRLIQ 165
>sp|Q5NWG5|IDI2_AROAE Isopentenyl-diphosphate Delta-isomerase 2 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi2 PE=3 SV=1
Length = 189
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 21/168 (12%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
D+ ILVDE+D VG K H LHRA S+F+F+S L+LQ+R+ K
Sbjct: 3 DQVILVDEHDNKVGFAGKMAAH------QRGALHRAISIFVFDSHSRLMLQRRAAGKYHS 56
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
+W+NTCCSHP EE+A +AA+R+L +E+G+ E F +Y+
Sbjct: 57 GGLWSNTCCSHPRPN-----EESA----DAARRRLREEMGVDCELKKAFSF------VYR 101
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRK 178
EHE D++ F D NPDE ++K+V+ +L +RK
Sbjct: 102 TKFGSGLIEHEFDHVFFGNHDGRPVLNPDEADDWKWVDLTELTVDVRK 149
>sp|Q82MJ7|IDI_STRAW Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=idi PE=3 SV=1
Length = 197
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 81/184 (44%), Gaps = 27/184 (14%)
Query: 15 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 74
LVDEN +G K H + LHRAFSVFLF+ + LLLQQR+ K P VW
Sbjct: 24 LVDENGTTIGTAEKLAAH-----QPPGQLHRAFSVFLFDEQGRLLLQQRALGKYHSPGVW 78
Query: 75 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP-S 133
+NTCC HP E+ AA R+ +ELG+ G + Y P
Sbjct: 79 SNTCCGHPYPGEAPFA---------AAARRTHEELGVSP-----SLLAEAGTVRYNHPDP 124
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
D E E ++L + + P+ +E+ + +V +L E K S WF
Sbjct: 125 DSGLVEQEFNHLFVGLVQSPLRPDAEEIGDTAFVTAAELAERHAKD-------PFSSWFM 177
Query: 194 LVVD 197
V+D
Sbjct: 178 TVLD 181
>sp|Q6LUX5|IDI_PHOPR Isopentenyl-diphosphate Delta-isomerase OS=Photobacterium profundum
GN=idi PE=3 SV=1
Length = 180
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 28/191 (14%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLF---NSKYELLLQQRSGTK 67
++ +LVD+ R +G + K H LH AFSV L+ E L+QQR+ K
Sbjct: 5 EQVVLVDQQGRALGLQEKMQAH------RDGALHLAFSVLLYRETTQGIEFLMQQRALGK 58
Query: 68 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 127
+WTNTCCSHP R+ E +E+ L R+L +E+GI V ++ +
Sbjct: 59 YHSGGLWTNTCCSHP--RQGETLEQAGL-------RRLTEEMGI----VGLESLDDIASF 105
Query: 128 LYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGL 186
+Y+A D + EHE D++L ++++ PN +EV Y++ ++ L+ L AD E
Sbjct: 106 VYRAELDNQLIEHEWDHVLIANGTELAIIPNSEEVKSYRWWSKADLE--LGLADTPE--- 160
Query: 187 KLSPWFRLVVD 197
+ WF V+
Sbjct: 161 LFTAWFPQVLQ 171
>sp|A1T5G2|IDI_MYCVP Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1) GN=idi PE=3 SV=1
Length = 181
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 26/185 (14%)
Query: 8 DTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 67
DT + +L+D++ R +G K H + LH AFS +LF+ +LL +R+ K
Sbjct: 5 DTAELVVLLDDDGRTIGSAPKAQVH-----HASTPLHLAFSCYLFDDAGRVLLTRRAVHK 59
Query: 68 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 127
TFP +WTNTCC HP E+ +++A R++ +ELG+ D+ L
Sbjct: 60 RTFPGIWTNTCCGHPAPGEA---------LQDAVTRRVREELGVGITDL----RCVLPDF 106
Query: 128 LYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRKADAGEEGL 186
Y+A + E+E+ +F R V V+P+ DEVA++ +V + ++ A E G
Sbjct: 107 RYRAVAADGVVENEV-CPVFCGRAVGQVHPDRDEVADHVWVPWQHMRA------AAEFGW 159
Query: 187 KLSPW 191
+SPW
Sbjct: 160 AISPW 164
>sp|B5F9P6|IDI_VIBFM Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain
MJ11) GN=idi PE=3 SV=1
Length = 181
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 92/194 (47%), Gaps = 32/194 (16%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIES--LNLLHRAFSVFLFNSK---YELLLQQRSGTKV 68
+LV+E +G MEK+E+ LLH AFSV L+ E LLQ+R+ K
Sbjct: 6 VLVNEQGDAIG--------TMEKLEAHEKGLLHLAFSVLLYRETDLGKEFLLQKRAECKY 57
Query: 69 TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 128
W+NTCCSHP E+ V A R+L +E+GI V ++F LG +
Sbjct: 58 HSKNKWSNTCCSHPRVNEN---------VEAAGTRRLNEEIGITG--VLPEQFVNLGWFI 106
Query: 129 YKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNREQL-KELLRKADAGEEGL 186
Y+A + EHE DY+L DVS NP+EV++ ++ + + KEL D
Sbjct: 107 YQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQWWSEADIEKELKANPDT----- 161
Query: 187 KLSPWFRLVVDNFL 200
S WF V L
Sbjct: 162 -FSVWFPTVYKKVL 174
>sp|Q5P011|IDI1_AROAE Isopentenyl-diphosphate Delta-isomerase 1 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi1 PE=3 SV=1
Length = 177
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 28/191 (14%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
D+ ILVDEND +G E K H LHRA S+F+F+S LLLQ+R+ +K
Sbjct: 3 DQVILVDENDTEIGVEGKMIAH------RSGSLHRAISIFIFDSADRLLLQKRAASKYHS 56
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE-DVPVDEFTPLGRILY 129
+W+NTCCSHP AA+R+L +E+GI E DV +Y
Sbjct: 57 AGLWSNTCCSHP---------RPREECARAARRRLREEMGIACELDVKFG-------FVY 100
Query: 130 KAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLS 189
+A E+E D++ F D PNPDE ++K+V+ L +AD E S
Sbjct: 101 RAVLTNHLIENEFDHVFFGRHDGDPVPNPDEAEDWKWVDLAWL-----RADLNERPHAYS 155
Query: 190 PWFRLVVDNFL 200
W +D +
Sbjct: 156 FWLEACIDRVI 166
>sp|Q5E7U8|IDI_VIBF1 Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=idi PE=3 SV=1
Length = 181
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 92/194 (47%), Gaps = 32/194 (16%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIES--LNLLHRAFSVFLFNSK---YELLLQQRSGTKV 68
+LV+E +G MEK+E+ LLH AFSV L+ E LLQ+R+ K
Sbjct: 6 VLVNEQGDAIG--------TMEKLEAHEKGLLHLAFSVLLYRETDLGKEFLLQKRAECKY 57
Query: 69 TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 128
W+NTCCSHP E+ V A R+L +E+GI V ++F LG +
Sbjct: 58 HSKNKWSNTCCSHPRVNEN---------VEVAGTRRLNEEIGITG--VLPEQFVNLGWFI 106
Query: 129 YKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNREQL-KELLRKADAGEEGL 186
Y+A + EHE DY+L DVS NP+EV++ ++ + + KE+ D
Sbjct: 107 YQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQWWSEADIEKEMKANPDT----- 161
Query: 187 KLSPWFRLVVDNFL 200
S WF V L
Sbjct: 162 -FSVWFPTVYKKVL 174
>sp|C1AP18|IDI_MYCBT Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=idi
PE=3 SV=1
Length = 176
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 10 FDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 69
+R +L+++ G +K H + LH AFS ++F+ +LL+ +R+ TK T
Sbjct: 11 IERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRT 65
Query: 70 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 129
+P VWTN+CC HPL ES + A +R+L ELG+ + VD P R Y
Sbjct: 66 WPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDR--VDLILPGFR--Y 112
Query: 130 KAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLS 189
+A E+E+ + + D PN DEV ++++ EQ +R AG +S
Sbjct: 113 RAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ---FVRDVTAGVIA-PVS 168
Query: 190 PWFR 193
PW R
Sbjct: 169 PWCR 172
>sp|A1KJG2|IDI_MYCBP Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Pasteur 1173P2) GN=idi PE=3 SV=1
Length = 176
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 10 FDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 69
+R +L+++ G +K H + LH AFS ++F+ +LL+ +R+ TK T
Sbjct: 11 IERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRT 65
Query: 70 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 129
+P VWTN+CC HPL ES + A +R+L ELG+ + VD P R Y
Sbjct: 66 WPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDR--VDLILPGFR--Y 112
Query: 130 KAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLS 189
+A E+E+ + + D PN DEV ++++ EQ +R AG +S
Sbjct: 113 RAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ---FVRDVTAGVIA-PVS 168
Query: 190 PWFR 193
PW R
Sbjct: 169 PWCR 172
>sp|A4FK76|IDI_SACEN Isopentenyl-diphosphate Delta-isomerase OS=Saccharopolyspora
erythraea (strain NRRL 23338) GN=idi PE=3 SV=1
Length = 194
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 10 FDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 69
++ +L++++ + +G +K H ++ LH AFS ++FN + +LLL QR+ K T
Sbjct: 1 MEQVVLLNDSGQAIGVTDKATVHHLD-----TPLHLAFSCYVFNGRGQLLLTQRAHEKRT 55
Query: 70 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 129
+P VWTNTCC HP +E+ + A R+L +ELG+ D+ + L R Y
Sbjct: 56 WPGVWTNTCCGHPAPQEA---------MPEAITRRLGEELGLTVRDLTLV----LPRFRY 102
Query: 130 KAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLS 189
+A E+E+ + D PN +EVA + + A+ +S
Sbjct: 103 RAVMGNGVVENEICPVFAAFTDDEPAPNREEVAGTAWADWSGF-----SAEVLAGTTDIS 157
Query: 190 PWFRLVVDNFL 200
PW R V +
Sbjct: 158 PWCRQQVAELV 168
>sp|P72002|IDI_MYCTU Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
tuberculosis GN=idi PE=3 SV=1
Length = 203
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 10 FDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 69
+R +L+++ G +K H + LH AFS ++F+ +LL+ +R+ TK T
Sbjct: 11 IERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRT 65
Query: 70 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 129
+P VWTN+CC HPL ES + A +R+L ELG+ + VD P R Y
Sbjct: 66 WPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDR--VDLILPGFR--Y 112
Query: 130 KAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLS 189
+A E+E+ + + D PN DEV ++++ EQ +R AG +S
Sbjct: 113 RAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ---FVRDVTAGVIA-PVS 168
Query: 190 PWFR 193
PW R
Sbjct: 169 PWCR 172
>sp|A5U3A5|IDI_MYCTA Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=idi PE=3
SV=1
Length = 203
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 10 FDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 69
+R +L+++ G +K H + LH AFS ++F+ +LL+ +R+ TK T
Sbjct: 11 IERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRT 65
Query: 70 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 129
+P VWTN+CC HPL ES + A +R+L ELG+ + VD P R Y
Sbjct: 66 WPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDR--VDLILPGFR--Y 112
Query: 130 KAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLS 189
+A E+E+ + + D PN DEV ++++ EQ +R AG +S
Sbjct: 113 RAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ---FVRDVTAGVIA-PVS 168
Query: 190 PWFR 193
PW R
Sbjct: 169 PWCR 172
>sp|B5XUF5|IDI_KLEP3 Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae
(strain 342) GN=idi PE=3 SV=1
Length = 184
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 25/189 (13%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
+ IL+DE D+ G KY H ++ LH AFS +LFN + + L+ +RS K +
Sbjct: 4 EHVILLDEQDQPAGMLEKYAAHTLD-----TPLHLAFSCWLFNQQGQFLVTRRSLGKKAW 58
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
P VWTN+ C HP ++ E E+ A R+ ELG+ D + P R Y+
Sbjct: 59 PGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGVEIAD--IAPIHPAFR--YR 105
Query: 131 APSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLS 189
A + E+E+ ++ R VS V PN DEV +Y++V+ E + L S
Sbjct: 106 AVAPNGIVENEV-CPVYAARVVSQVQPNDDEVMDYQWVDLETMLSALAATP-----WAFS 159
Query: 190 PWFRLVVDN 198
PW L +N
Sbjct: 160 PWMVLEAEN 168
>sp|A6TDP3|IDI_KLEP7 Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
GN=idi PE=3 SV=1
Length = 184
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 27/187 (14%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
IL+DE D+ G KY H + LH AFS +LFN + +LL+ +RS K +P V
Sbjct: 7 ILLDEQDQPAGMLEKYAAHTFD-----TPLHLAFSCWLFNQQGQLLVTRRSLGKKAWPGV 61
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PVDEFTPLGRILYKAP 132
WTN+ C HP ++ E E+ A R+ ELG+ D+ PV P R Y+A
Sbjct: 62 WTNSVCGHP--QQGETFEQ-------AVTRRCRFELGVEISDIAPVH---PAFR--YRAV 107
Query: 133 SDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW 191
+ E+E+ ++ R VS V PN DEV +Y++V+ + L SPW
Sbjct: 108 APNGIVENEV-CPVYAARVVSEVQPNDDEVMDYQWVDLATMLSALAATP-----WAFSPW 161
Query: 192 FRLVVDN 198
L +N
Sbjct: 162 MVLEAEN 168
>sp|A5CV36|IDI_CLAM3 Isopentenyl-diphosphate Delta-isomerase OS=Clavibacter
michiganensis subsp. michiganensis (strain NCPPB 382)
GN=idi PE=3 SV=1
Length = 194
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 23/181 (12%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
+L+D++ +G K H + LH AFS +F+++ +L+ +R+ K+T+P V
Sbjct: 9 VLLDDDGETIGTAPKATVHTRD-----TALHLAFSCHVFDAQGRILVTRRAIGKLTWPGV 63
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
WTN+ C HP E +R A R+ ELG+ E V E L Y+A
Sbjct: 64 WTNSFCGHPAPDED---------MREAVHRRAEQELGLELESV---ELV-LPDFRYRATD 110
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
E+E+ + V V+P P+EV EY++V+ EQL + SPW
Sbjct: 111 AAGVVENEICPVFRAVAASPVDPRPEEVGEYQWVDPEQLIPAV-----AHTPWAFSPWLT 165
Query: 194 L 194
L
Sbjct: 166 L 166
>sp|B0RIB7|IDI_CLAMS Isopentenyl-diphosphate Delta-isomerase OS=Clavibacter
michiganensis subsp. sepedonicus (strain ATCC 33113 /
JCM 9667) GN=idi PE=3 SV=1
Length = 190
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 14 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 73
+L+D++ +G K H + LH AFS +F+++ +L+ +R+ K+T+P V
Sbjct: 9 VLLDDDGETIGTAPKATVHTRD-----TALHLAFSCHVFDAEGRILVTRRAIGKLTWPGV 63
Query: 74 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133
WTN+ C HP E L A R+ ELG+ E V E L Y+A
Sbjct: 64 WTNSFCGHPAPDEDML---------EAVHRRAEQELGLTLESV---ELV-LPDFRYRATD 110
Query: 134 DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193
E+E+ + V V+P P+EV EY++V+ EQL + SPW
Sbjct: 111 AAGVVENEICPVFRAVAATPVDPRPEEVGEYQWVDPEQLIPAV-----AHTPWAFSPWLT 165
Query: 194 L 194
L
Sbjct: 166 L 166
>sp|Q7VEU0|IDI_MYCBO Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=idi PE=3 SV=1
Length = 176
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 22/184 (11%)
Query: 10 FDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 69
+R +L+++ G +K H + LH AFS ++ + +LL+ +R+ TK T
Sbjct: 11 IERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVSDLHDQLLITRRAATKRT 65
Query: 70 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 129
+P VWTN+CC HPL ES + A +R+L ELG+ + VD P R Y
Sbjct: 66 WPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDR--VDLILPGFR--Y 112
Query: 130 KAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLS 189
+A E+E+ + + D PN DEV ++++ EQ +R AG +S
Sbjct: 113 RAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ---FVRDVTAGVIA-PVS 168
Query: 190 PWFR 193
PW R
Sbjct: 169 PWCR 172
>sp|A4WE41|IDI_ENT38 Isopentenyl-diphosphate Delta-isomerase OS=Enterobacter sp. (strain
638) GN=idi PE=3 SV=1
Length = 183
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 29/185 (15%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
+ ILV++ VVG + KY H S LH AFS +LFN + + L+ +R+ +K+ +
Sbjct: 5 EHVILVNDQGEVVGTQEKYAAHT-----SHTSLHLAFSSWLFNDRGQCLVTRRALSKIAW 59
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG---RI 127
P VWTN+ C HP E+ A R+ E+G V + + TP+ R
Sbjct: 60 PGVWTNSVCGHPQIGET---------TEQAIARRCRFEVG-----VEIAQLTPIAADFRY 105
Query: 128 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 187
PS E + IV + V NPDEV +Y++V +L LLR +A
Sbjct: 106 CEIDPSGIVENEICPVFAAQIVSPLKV--NPDEVMDYQWV---ELTSLLRALEATP--WA 158
Query: 188 LSPWF 192
SPW
Sbjct: 159 FSPWM 163
>sp|B7UHT8|IDI_ECO27 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=idi PE=3 SV=1
Length = 182
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 23/188 (12%)
Query: 11 DRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 70
+ IL++ G KY H + LLH AFS +LFN+K +LL+ +R+ +K +
Sbjct: 4 EHVILLNAQGVPTGTLEKYAAHTAD-----TLLHLAFSSWLFNAKGQLLVTRRALSKKAW 58
Query: 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130
P VWTN+ C HP +L E NA A R+ ELG+ E P + P R Y+
Sbjct: 59 PGVWTNSVCGHP-----QLGESNA----EAVIRRCRYELGV--EITPPESIYPGFR--YR 105
Query: 131 APSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 190
A E+E+ + + ++ N DEV +Y++ + L +LR DA SP
Sbjct: 106 ATDPNGIVENEVCPVFAALTTSALQINDDEVMDYQWCD---LAAVLRGIDATP--WAFSP 160
Query: 191 WFRLVVDN 198
W + N
Sbjct: 161 WMVMQATN 168
>sp|Q0RBQ7|IDI_FRAAA Isopentenyl-diphosphate Delta-isomerase OS=Frankia alni (strain
ACN14a) GN=idi PE=3 SV=1
Length = 194
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 25/187 (13%)
Query: 6 VIDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSG 65
+D D +L+D + R G + H ++ LH AFS +LF++ LL+ +R+
Sbjct: 9 AVDVDDEVVLLDPDRRPCGTAPRLAVHGLD-----TPLHLAFSSYLFDAAGRLLVTRRAL 63
Query: 66 TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125
K T+P VWTN+CC HP R E I AL V +R++ EL + D+ L
Sbjct: 64 GKRTWPGVWTNSCCGHP--RPGEDI---ALAV----ERRVDQELRLALTDL----HCALP 110
Query: 126 RILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRKADAGEE 184
Y+A + E+E+ +++ R V +P+P EV E+++V+ E ++ A
Sbjct: 111 DFAYRATAADGLVENEV-CPVYVARAVGDPDPDPAEVVEWRWVDWESYRQAALAAP---- 165
Query: 185 GLKLSPW 191
LSPW
Sbjct: 166 -WALSPW 171
>sp|A8LQ20|IDI_DINSH Isopentenyl-diphosphate Delta-isomerase OS=Dinoroseobacter shibae
(strain DFL 12) GN=idi PE=3 SV=1
Length = 176
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 28/159 (17%)
Query: 41 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNA 100
L H+A SVF+ E L+Q+R+ K P +W NTCC+HPL+ ES +
Sbjct: 25 GLRHKAVSVFVMRGP-ETLIQRRALDKYHTPGLWANTCCTHPLWDESPA---------DC 74
Query: 101 AQRKLLDELGICAEDVPVDEFTPL--GRILYKAPSDGKWGEHELDYLLFIVR---DVSVN 155
A R+L +ELGI P RI Y+A EHE+ LFI ++ V
Sbjct: 75 AVRRLREELGITG-------LYPAHRDRIEYRADVGNGLIEHEV-VDLFIAEAPANLKVA 126
Query: 156 PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 194
PNP+EVAE K+V+ +L +++ + +PW R+
Sbjct: 127 PNPEEVAEVKWVDLYELNAQVKRRPE-----RYTPWLRI 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,319,240
Number of Sequences: 539616
Number of extensions: 3756644
Number of successful extensions: 8619
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8397
Number of HSP's gapped (non-prelim): 128
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)