Query 027303
Match_columns 225
No_of_seqs 147 out of 1629
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02552 isopentenyl-diphospha 100.0 1E-40 2.2E-45 288.7 21.4 210 10-225 22-247 (247)
2 KOG0142 Isopentenyl pyrophosph 100.0 3.3E-39 7.3E-44 265.9 11.0 210 7-224 16-225 (225)
3 cd02885 IPP_Isomerase Isopente 100.0 1.9E-32 4.2E-37 223.7 16.8 163 10-196 1-164 (165)
4 PRK03759 isopentenyl-diphospha 100.0 5.2E-32 1.1E-36 225.1 18.5 170 7-199 2-171 (184)
5 COG1443 Idi Isopentenyldiphosp 100.0 1.5E-32 3.2E-37 222.6 12.3 171 9-199 2-172 (185)
6 cd03676 Nudix_hydrolase_3 Memb 100.0 2.7E-30 5.8E-35 213.7 18.1 170 9-202 3-178 (180)
7 TIGR02150 IPP_isom_1 isopenten 100.0 2.9E-30 6.2E-35 209.8 17.4 157 13-195 1-157 (158)
8 PRK15393 NUDIX hydrolase YfcD; 100.0 8.7E-28 1.9E-32 199.3 19.2 161 8-202 7-167 (180)
9 PLN02791 Nudix hydrolase homol 100.0 3.6E-28 7.8E-33 236.9 18.4 160 9-191 2-169 (770)
10 cd04692 Nudix_Hydrolase_33 Mem 99.9 1.1E-24 2.4E-29 173.7 14.2 135 43-194 1-141 (144)
11 cd04697 Nudix_Hydrolase_38 Mem 99.9 3.5E-22 7.6E-27 155.8 14.1 116 45-179 1-116 (126)
12 cd04693 Nudix_Hydrolase_34 Mem 99.9 4.2E-22 9.1E-27 155.0 12.8 123 45-193 1-124 (127)
13 PRK15472 nucleoside triphospha 99.8 5E-20 1.1E-24 146.0 13.9 118 44-175 3-125 (141)
14 PRK09438 nudB dihydroneopterin 99.8 6.5E-19 1.4E-23 140.7 14.2 130 43-201 6-144 (148)
15 PF00293 NUDIX: NUDIX domain; 99.8 7.1E-19 1.5E-23 135.9 13.2 120 43-179 1-123 (134)
16 cd04682 Nudix_Hydrolase_23 Mem 99.8 5.5E-19 1.2E-23 136.6 11.7 112 44-176 1-115 (122)
17 cd04681 Nudix_Hydrolase_22 Mem 99.8 1.9E-18 4.1E-23 134.4 13.2 128 45-200 2-130 (130)
18 cd04696 Nudix_Hydrolase_37 Mem 99.8 3.1E-18 6.8E-23 132.8 13.9 111 45-175 3-114 (125)
19 PRK15434 GDP-mannose mannosyl 99.8 3.3E-18 7.2E-23 139.5 13.8 118 43-175 16-137 (159)
20 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 6.8E-18 1.5E-22 132.6 15.1 115 44-179 2-119 (137)
21 cd04679 Nudix_Hydrolase_20 Mem 99.8 4.4E-18 9.6E-23 131.8 13.5 115 44-178 2-118 (125)
22 cd03673 Ap6A_hydrolase Diadeno 99.8 9E-18 1.9E-22 130.0 15.0 123 45-199 2-129 (131)
23 cd04694 Nudix_Hydrolase_35 Mem 99.8 1E-17 2.2E-22 134.3 15.7 125 45-180 2-136 (143)
24 cd03426 CoAse Coenzyme A pyrop 99.8 2.9E-18 6.4E-23 138.9 12.1 112 44-175 2-118 (157)
25 cd04684 Nudix_Hydrolase_25 Con 99.8 9.2E-18 2E-22 129.4 13.4 112 46-175 2-117 (128)
26 cd04700 DR1025_like DR1025 fro 99.8 1.3E-17 2.8E-22 133.0 14.1 119 40-179 9-129 (142)
27 cd03674 Nudix_Hydrolase_1 Memb 99.8 2.3E-17 4.9E-22 130.6 15.4 131 44-200 2-137 (138)
28 cd03430 GDPMH GDP-mannose glyc 99.8 1.1E-17 2.4E-22 133.8 13.7 117 44-175 12-132 (144)
29 cd04664 Nudix_Hydrolase_7 Memb 99.8 1.1E-17 2.3E-22 130.3 13.1 114 45-178 2-121 (129)
30 cd04683 Nudix_Hydrolase_24 Mem 99.8 1E-17 2.3E-22 128.5 12.7 114 46-178 2-117 (120)
31 cd03675 Nudix_Hydrolase_2 Cont 99.8 2.5E-17 5.4E-22 128.9 15.0 126 47-202 3-130 (134)
32 cd03427 MTH1 MutT homolog-1 (M 99.8 1.2E-17 2.6E-22 131.0 13.1 124 45-200 2-125 (137)
33 cd03671 Ap4A_hydrolase_plant_l 99.8 2.4E-17 5.1E-22 131.8 14.8 117 43-178 2-134 (147)
34 cd04691 Nudix_Hydrolase_32 Mem 99.8 2.3E-17 5.1E-22 127.0 12.9 107 48-178 4-111 (117)
35 cd04678 Nudix_Hydrolase_19 Mem 99.7 2.9E-17 6.4E-22 127.7 13.5 112 44-175 2-117 (129)
36 cd04673 Nudix_Hydrolase_15 Mem 99.7 3.1E-17 6.7E-22 125.6 13.2 112 46-176 2-115 (122)
37 cd04680 Nudix_Hydrolase_21 Mem 99.7 2.2E-17 4.7E-22 126.3 12.0 105 46-175 2-108 (120)
38 cd04677 Nudix_Hydrolase_18 Mem 99.7 3E-17 6.5E-22 127.7 12.0 114 42-177 5-124 (132)
39 cd04670 Nudix_Hydrolase_12 Mem 99.7 1.1E-16 2.4E-21 124.2 14.3 109 44-175 2-113 (127)
40 cd03429 NADH_pyrophosphatase N 99.7 4.5E-17 9.7E-22 128.0 12.1 105 46-175 2-107 (131)
41 cd04699 Nudix_Hydrolase_39 Mem 99.7 7.5E-17 1.6E-21 124.5 13.2 115 46-178 3-117 (129)
42 PLN02839 nudix hydrolase 99.7 1.7E-16 3.6E-21 143.3 16.0 171 9-203 173-349 (372)
43 PRK00714 RNA pyrophosphohydrol 99.7 3.4E-16 7.3E-21 126.9 14.7 116 43-178 7-138 (156)
44 cd04676 Nudix_Hydrolase_17 Mem 99.7 1.4E-16 3.1E-21 122.4 11.6 109 45-175 3-117 (129)
45 PLN02325 nudix hydrolase 99.7 2.8E-16 6E-21 125.8 13.5 115 42-175 7-125 (144)
46 cd04688 Nudix_Hydrolase_29 Mem 99.7 3.2E-16 7E-21 121.5 12.4 109 44-175 2-118 (126)
47 cd04689 Nudix_Hydrolase_30 Mem 99.7 5.1E-16 1.1E-20 120.2 13.3 108 44-173 1-112 (125)
48 cd04690 Nudix_Hydrolase_31 Mem 99.7 3.7E-16 8.1E-21 119.4 12.4 109 46-175 2-110 (118)
49 PRK10776 nucleoside triphospha 99.7 5.6E-16 1.2E-20 119.4 13.3 120 46-199 6-126 (129)
50 cd03425 MutT_pyrophosphohydrol 99.7 6.6E-16 1.4E-20 117.5 13.1 108 46-175 3-110 (124)
51 PRK10546 pyrimidine (deoxy)nuc 99.7 1.4E-15 3E-20 119.0 14.3 121 46-201 6-127 (135)
52 cd04687 Nudix_Hydrolase_28 Mem 99.7 9.5E-16 2.1E-20 119.3 13.2 114 45-175 2-121 (128)
53 cd04695 Nudix_Hydrolase_36 Mem 99.7 1.4E-15 3E-20 119.2 13.9 107 52-178 10-117 (131)
54 cd03428 Ap4A_hydrolase_human_l 99.7 1.3E-15 2.7E-20 118.4 13.5 111 45-178 3-118 (130)
55 cd03672 Dcp2p mRNA decapping e 99.7 1.8E-15 3.9E-20 121.4 14.7 108 46-179 3-115 (145)
56 cd04671 Nudix_Hydrolase_13 Mem 99.7 1.3E-15 2.9E-20 118.6 12.4 105 46-175 2-110 (123)
57 cd04666 Nudix_Hydrolase_9 Memb 99.7 3.5E-15 7.5E-20 116.3 14.0 113 46-178 2-118 (122)
58 cd04667 Nudix_Hydrolase_10 Mem 99.7 2.2E-15 4.8E-20 114.7 12.3 93 54-176 9-102 (112)
59 cd04672 Nudix_Hydrolase_14 Mem 99.6 2E-15 4.3E-20 116.8 11.8 111 45-177 3-114 (123)
60 cd02883 Nudix_Hydrolase Nudix 99.6 3.5E-15 7.6E-20 112.3 12.5 109 46-175 2-112 (123)
61 PRK11762 nudE adenosine nucleo 99.6 2.7E-14 5.8E-19 118.8 18.7 114 45-179 48-163 (185)
62 cd04669 Nudix_Hydrolase_11 Mem 99.6 1.9E-15 4.1E-20 117.1 10.9 102 47-175 3-114 (121)
63 cd04685 Nudix_Hydrolase_26 Mem 99.6 7E-15 1.5E-19 116.3 13.6 116 45-175 1-123 (133)
64 PRK00241 nudC NADH pyrophospha 99.6 3.4E-15 7.5E-20 130.4 12.3 106 44-175 132-238 (256)
65 TIGR00586 mutt mutator mutT pr 99.6 1.5E-14 3.1E-19 111.8 14.0 109 45-175 5-113 (128)
66 PRK10707 putative NUDIX hydrol 99.6 9.2E-15 2E-19 122.5 13.5 113 46-176 32-147 (190)
67 cd04511 Nudix_Hydrolase_4 Memb 99.6 2.2E-14 4.9E-19 112.1 12.1 103 45-173 14-117 (130)
68 cd04661 MRP_L46 Mitochondrial 99.6 2.1E-14 4.5E-19 113.1 10.4 109 55-178 12-123 (132)
69 COG1051 ADP-ribose pyrophospha 99.6 4.3E-14 9.4E-19 113.5 12.3 112 43-175 9-122 (145)
70 cd04686 Nudix_Hydrolase_27 Mem 99.6 1.1E-13 2.4E-18 108.6 13.9 113 46-178 2-122 (131)
71 PRK05379 bifunctional nicotina 99.6 1.3E-13 2.8E-18 125.0 16.2 134 44-201 203-339 (340)
72 PRK10729 nudF ADP-ribose pyrop 99.5 5.9E-13 1.3E-17 112.5 17.7 115 45-179 50-175 (202)
73 TIGR00052 nudix-type nucleosid 99.5 2.3E-13 5E-18 113.5 13.7 115 45-179 45-169 (185)
74 PLN02709 nudix hydrolase 99.5 1.5E-13 3.3E-18 117.4 12.6 116 42-175 31-155 (222)
75 PRK08999 hypothetical protein; 99.5 6.6E-13 1.4E-17 118.3 13.9 108 45-175 6-114 (312)
76 PRK15009 GDP-mannose pyrophosp 99.4 5.9E-12 1.3E-16 105.6 15.7 114 45-179 46-170 (191)
77 TIGR02705 nudix_YtkD nucleosid 99.4 8.1E-12 1.8E-16 101.6 15.4 129 15-180 3-132 (156)
78 cd04662 Nudix_Hydrolase_5 Memb 99.4 1.2E-11 2.5E-16 97.2 11.8 59 46-114 2-65 (126)
79 COG2816 NPY1 NTP pyrophosphohy 99.4 2.2E-12 4.7E-17 113.0 8.1 112 41-178 141-253 (279)
80 cd04665 Nudix_Hydrolase_8 Memb 99.3 1.4E-11 3E-16 95.8 11.6 100 46-172 2-102 (118)
81 cd04674 Nudix_Hydrolase_16 Mem 99.3 1.4E-10 3E-15 90.2 12.4 56 46-114 6-61 (118)
82 KOG3084 NADH pyrophosphatase I 99.3 4.1E-12 8.8E-17 112.1 4.2 142 43-206 186-333 (345)
83 cd04663 Nudix_Hydrolase_6 Memb 99.2 3E-10 6.4E-15 89.4 10.4 51 47-113 3-55 (126)
84 KOG4313 Thiamine pyrophosphoki 99.2 1.4E-10 2.9E-15 99.4 8.9 167 9-200 103-276 (306)
85 cd03670 ADPRase_NUDT9 ADP-ribo 99.2 2E-10 4.4E-15 95.9 9.7 103 57-175 50-171 (186)
86 PLN03143 nudix hydrolase; Prov 99.1 9.6E-10 2.1E-14 97.6 12.4 116 45-178 129-268 (291)
87 COG0494 MutT NTP pyrophosphohy 99.1 7.3E-10 1.6E-14 84.7 10.3 116 46-178 13-137 (161)
88 KOG3069 Peroxisomal NUDIX hydr 99.1 3.9E-10 8.5E-15 96.1 9.2 112 45-175 44-163 (246)
89 cd03431 DNA_Glycosylase_C DNA 99.0 8.6E-09 1.9E-13 77.9 13.5 112 48-198 6-117 (118)
90 KOG2839 Diadenosine and diphos 98.8 3.8E-08 8.3E-13 78.3 10.7 127 43-202 8-141 (145)
91 KOG3041 Nucleoside diphosphate 98.5 6.2E-06 1.3E-10 69.0 14.8 109 51-179 81-198 (225)
92 KOG0648 Predicted NUDIX hydrol 98.5 1.1E-07 2.4E-12 84.0 3.9 118 44-179 115-235 (295)
93 PF14815 NUDIX_4: NUDIX domain 98.3 1.8E-06 3.9E-11 65.8 6.7 102 49-175 2-103 (114)
94 COG4112 Predicted phosphoester 98.0 6.8E-05 1.5E-09 61.0 10.5 132 48-197 65-200 (203)
95 COG4119 Predicted NTP pyrophos 97.8 0.00021 4.6E-09 56.0 9.2 91 71-179 35-139 (161)
96 PRK10880 adenine DNA glycosyla 96.5 0.039 8.4E-07 50.6 11.2 33 44-77 230-262 (350)
97 KOG4195 Transient receptor pot 94.9 0.031 6.8E-07 47.9 3.9 116 58-199 141-271 (275)
98 KOG4432 Uncharacterized NUDIX 94.2 0.33 7.2E-06 43.5 8.7 84 91-181 294-382 (405)
99 PF14443 DBC1: DBC1 93.0 0.84 1.8E-05 35.9 8.2 66 58-133 10-76 (126)
100 PF13869 NUDIX_2: Nucleotide h 92.8 0.29 6.2E-06 41.1 5.8 60 39-114 39-100 (188)
101 TIGR01084 mutY A/G-specific ad 91.2 0.66 1.4E-05 41.1 6.6 33 44-77 226-259 (275)
102 KOG4432 Uncharacterized NUDIX 86.1 1.6 3.5E-05 39.2 5.3 85 78-179 84-173 (405)
103 KOG4548 Mitochondrial ribosoma 85.5 4.4 9.5E-05 35.5 7.6 106 58-178 141-250 (263)
104 PRK13910 DNA glycosylase MutY; 82.7 2 4.4E-05 38.4 4.5 29 46-77 188-216 (289)
105 KOG1689 mRNA cleavage factor I 68.8 14 0.00031 30.7 5.5 56 40-111 66-123 (221)
106 KOG2937 Decapping enzyme compl 67.2 2 4.3E-05 39.1 0.3 54 46-114 84-138 (348)
107 COG1194 MutY A/G-specific DNA 64.8 3.6 7.8E-05 37.7 1.5 34 44-78 235-268 (342)
108 PF03487 IL13: Interleukin-13; 45.0 20 0.00044 22.5 2.0 22 79-109 15-36 (43)
109 PF00571 CBS: CBS domain CBS d 38.9 20 0.00043 22.7 1.5 25 7-31 27-51 (57)
110 PF02743 Cache_1: Cache domain 36.6 35 0.00076 23.5 2.5 49 13-63 19-70 (81)
111 PF07494 Reg_prop: Two compone 27.8 84 0.0018 16.9 2.6 17 45-61 5-21 (24)
112 PF07193 DUF1408: Protein of u 25.1 99 0.0021 21.5 3.0 24 45-68 29-56 (75)
No 1
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=100.00 E-value=1e-40 Score=288.69 Aligned_cols=210 Identities=79% Similarity=1.296 Sum_probs=182.2
Q ss_pred cceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCC--
Q 027303 10 FDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRES-- 87 (225)
Q Consensus 10 ~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs-- 87 (225)
+|.|.+||++++++|..+|+++|....+..++++|++++++|+|++|++|||||+..|..|||+|+.++|||+..||+
T Consensus 22 ~e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~ 101 (247)
T PLN02552 22 EDECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPN 101 (247)
T ss_pred cCeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccc
Confidence 589999999999999999999997555666899999999999999999999999999999999999999999999854
Q ss_pred ------hhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCC------CCCcceEEEEEEEEec--Ccc
Q 027303 88 ------ELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD------GKWGEHELDYLLFIVR--DVS 153 (225)
Q Consensus 88 ------~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~------~~~~e~~~~~v~~~~~--~~~ 153 (225)
.++.++..++.+||+||++|||||.+..++++++.+++++.|..+.. ++|.+++++++|+... ...
T Consensus 102 e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~ 181 (247)
T PLN02552 102 EVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVK 181 (247)
T ss_pred cccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCc
Confidence 23344455578999999999999998766666788888888887654 6677788888776532 347
Q ss_pred ccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHHHhhhcccccccccCcCceeecC
Q 027303 154 VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 225 (225)
Q Consensus 154 ~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (225)
+.++++|+.+++|++++++.+++.+. .|..|+||++.++++|+..||++|++. .|++||+.||||.
T Consensus 182 l~lq~eEV~~~~wvs~~el~~~~~~~----~~~~~tpw~~~~~~~~l~~w~~~~~~~--~~~~~~~~i~~~~ 247 (247)
T PLN02552 182 VNPNPDEVADVKYVNREELKEMMRKE----SGLKLSPWFRLIVDNFLMKWWDDLEKG--TEAVDMKTIHKLM 247 (247)
T ss_pred ccCCHHHhheEEEEeHHHHHHHHhhc----CCcccCHHHHHHHHHHHHHHHhhhcch--hhccChhhheecC
Confidence 78899999999999999999998753 368899999999999999999999998 9999999999983
No 2
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-39 Score=265.91 Aligned_cols=210 Identities=65% Similarity=1.107 Sum_probs=193.1
Q ss_pred cCccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCC
Q 027303 7 IDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE 86 (225)
Q Consensus 7 ~~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE 86 (225)
..+.|.|.+||+|++++|..++++||.|.++. ++++||++++|++|+++++||||||..|..||+.|..++++|.-...
T Consensus 16 ~~l~e~ci~VDenD~~IG~~tk~~cHl~eni~-kglLHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~ 94 (225)
T KOG0142|consen 16 KLLAENCILVDENDNVIGAGTKKNCHLMENIE-KGLLHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNP 94 (225)
T ss_pred HHHhhheEeeccccccccchhhhhhhcchhHH-hhhhhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCCh
Confidence 44788999999999999999999999999997 56999999999999999999999999999999999999999987443
Q ss_pred ChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEE
Q 027303 87 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 166 (225)
Q Consensus 87 s~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~W 166 (225)
..+.+.++.+...||+|.|+-|+||....++++++.++++++|..++++.|++|+++|+++...+..++++++|+.+++|
T Consensus 95 ~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ry 174 (225)
T KOG0142|consen 95 GELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRY 174 (225)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhhe
Confidence 33456678899999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred eCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHHHhhhcccccccccCcCceeec
Q 027303 167 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224 (225)
Q Consensus 167 v~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (225)
|+.+||..++++.+ ..|+|||+.+.++|++.||+++.+ +++..++..||++
T Consensus 175 vs~eelkel~~~~~-----~~~TPWfkli~~~~l~~WW~~l~~--~~~~~~~~~i~r~ 225 (225)
T KOG0142|consen 175 VSREELKELVAKAS-----AGFTPWFKLISENFLFKWWDDLDK--LTEFEEDTNIHRL 225 (225)
T ss_pred ecHHHHHHHHhccc-----cCCChHHHHHHHHHHHHHHhhhcc--cccCccccccccC
Confidence 99999999999864 469999999999999999999986 6788899999985
No 3
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=100.00 E-value=1.9e-32 Score=223.65 Aligned_cols=163 Identities=53% Similarity=0.877 Sum_probs=136.0
Q ss_pred cceEEEEcCCCCEeeeeecccccchhhcccCCcc-eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCCh
Q 027303 10 FDRCILVDENDRVVGHENKYNCHLMEKIESLNLL-HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 88 (225)
Q Consensus 10 ~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~-h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~ 88 (225)
+|+|++||++++++|+.+|+.+|. ++.+ |++++++++|++|++||+||+..+..+||.|++|+||++++||+
T Consensus 1 ~e~~~~~d~~~~~~g~~~r~~~~~------~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt- 73 (165)
T cd02885 1 EELVILVDEDDNPIGTAEKLEAHL------KGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEG- 73 (165)
T ss_pred CcEEEEECCCCCCccccCHHHHhh------cCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCC-
Confidence 599999999999999999998875 6777 99999999999999999999988889999999988999999999
Q ss_pred hhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeC
Q 027303 89 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN 168 (225)
Q Consensus 89 ~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~ 168 (225)
+++||+||++||||+.+..... . ++.+.|..+....+..+.+.++|.+.......++++|+.+++|++
T Consensus 74 --------~~eaa~REl~EEtGl~~~~~~~---~-~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~Ev~~~~w~~ 141 (165)
T cd02885 74 --------VKDAAQRRLREELGITGDLLEL---V-LPRFRYRAPDDGGLVEHEIDHVFFARADVTLIPNPDEVSEYRWVS 141 (165)
T ss_pred --------HHHHHHHHHHHHhCCCccchhh---c-cceEEEEEEcCCCceeeEEEEEEEEEeCCCCCCCccceeEEEEEC
Confidence 8999999999999999874322 1 355556544333334455667777765555556778999999999
Q ss_pred HHHHHHHHHhccCCCCCcccChhHHHHH
Q 027303 169 REQLKELLRKADAGEEGLKLSPWFRLVV 196 (225)
Q Consensus 169 ~eel~~~~~~~~~~~~~~~~~p~~~~~~ 196 (225)
++++.+++.++ +..++||+..++
T Consensus 142 ~~el~~~~~~~-----~~~~~~~~~~~~ 164 (165)
T cd02885 142 LEDLKELVAAA-----PEAFTPWFRLIL 164 (165)
T ss_pred HHHHHHHHHhC-----chhcCHHHHHHh
Confidence 99999999886 579999999876
No 4
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=100.00 E-value=5.2e-32 Score=225.11 Aligned_cols=170 Identities=32% Similarity=0.526 Sum_probs=139.5
Q ss_pred cCccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCC
Q 027303 7 IDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE 86 (225)
Q Consensus 7 ~~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE 86 (225)
|+++|+|++||+||+++|..+|+++|. .++.+|++++++++|++|++||+||+..+..+||.|++|+||++++||
T Consensus 2 ~~~~E~~~~vd~~~~~~g~~~r~~~~~-----~~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE 76 (184)
T PRK03759 2 MMETELVVLLDEQGVPTGTAEKAAAHT-----ADTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGE 76 (184)
T ss_pred CCCceeEEEECCCCCCcccccHHHHHh-----cCCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCC
Confidence 678999999999999999999998884 478899999999999999999999998888899999999999999999
Q ss_pred ChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEE
Q 027303 87 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 166 (225)
Q Consensus 87 s~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~W 166 (225)
+ +++||+||+.||||+++..+. ..++.+.|......+...++++++|.+.....+.++++|+.+++|
T Consensus 77 t---------~~~aa~REl~EEtGl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W 143 (184)
T PRK03759 77 S---------LEDAVIRRCREELGVEITDLE----LVLPDFRYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQW 143 (184)
T ss_pred C---------HHHHHHHHHHHHhCCCccccc----cccceEEEEEecCCCceeeEEEEEEEEEECCCCCCChhHeeeEEE
Confidence 9 899999999999999986332 123344443322222233556677777655556677889999999
Q ss_pred eCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303 167 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 199 (225)
Q Consensus 167 v~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (225)
++++++.+++..+ +..++||++..+-++
T Consensus 144 ~~~~el~~~i~~~-----~~~~~~~l~~~~~~~ 171 (184)
T PRK03759 144 VDPADLLRAVDAT-----PWAFSPWMVLQAANL 171 (184)
T ss_pred ECHHHHHHHHHhC-----CcccChHHHHHHHHh
Confidence 9999999999986 468999999877654
No 5
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=100.00 E-value=1.5e-32 Score=222.60 Aligned_cols=171 Identities=40% Similarity=0.639 Sum_probs=158.4
Q ss_pred ccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCCh
Q 027303 9 TFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 88 (225)
Q Consensus 9 ~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~ 88 (225)
+.|.|.++|.+|+++|..+|..||.+.+++ +|++++++|+|.+|++||+||+..|..|||.|+.+++||.-+||+
T Consensus 2 ~~e~vill~~~d~~~G~~~k~~~Ht~d~~~----LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es- 76 (185)
T COG1443 2 MTEDVILLNDDDVPTGTAEKLAAHTGDTPR----LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGES- 76 (185)
T ss_pred CceeEEEECCCCCccccchhhhhhccccHH----HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCc-
Confidence 579999999999999999999999965543 899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeC
Q 027303 89 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN 168 (225)
Q Consensus 89 ~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~ 168 (225)
.++||+|.+.+|+||.+.. .+.+.++.+|+|..++.++|.|+++|+++.+..+..+.++++||++++|++
T Consensus 77 --------~~~A~~rRl~~ELGie~~~--~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~ 146 (185)
T COG1443 77 --------NEDAARRRLAYELGIEPDQ--YDKLEILPRFRYRAADPDGIVENEICPVLAARLDSALDPNPDEVMDYRWVS 146 (185)
T ss_pred --------hHHHHHHHHHHHhCCCCcc--cCccccccceEEeccCCCCcceeeeeeEEEEeecCCCCCChHHhhheeccC
Confidence 7999999999999999885 345778899999999999999999999999988778889999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303 169 REQLKELLRKADAGEEGLKLSPWFRLVVDNF 199 (225)
Q Consensus 169 ~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (225)
++++.++.... +..|+||+....+++
T Consensus 147 ~e~l~~~~~~~-----~~~fsPW~~~~~~~~ 172 (185)
T COG1443 147 PEDLKEMVDAT-----PWAFSPWFVIQAEND 172 (185)
T ss_pred HHHHHHhhcCC-----ceeeChHHHHHhcch
Confidence 99999998875 567999999999988
No 6
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.97 E-value=2.7e-30 Score=213.67 Aligned_cols=170 Identities=16% Similarity=0.231 Sum_probs=139.0
Q ss_pred ccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEE--EEeCC--CeEEEeeecCCCCCCCCCeeeccccCCCC
Q 027303 9 TFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF--LFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLY 84 (225)
Q Consensus 9 ~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~--i~d~~--g~vLL~rRs~~k~~~pg~W~~p~gG~ve~ 84 (225)
.+|++++||++|+++|..+|.++|+ +|++|++|+++ +.|++ +++|++||+..|..+||+|+..+|||+++
T Consensus 3 ~~E~~~v~d~~~~~~~~~~r~~~~~------~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~ 76 (180)
T cd03676 3 RNELYAVYGPFGEPLFEIERAASRL------FGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGH 76 (180)
T ss_pred cCcceeeECCCCCEeEEEEeccccc------CCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCC
Confidence 5899999999999999999998874 89999999965 55765 89999999999999999998777999999
Q ss_pred CCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCccccc
Q 027303 85 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVA 162 (225)
Q Consensus 85 gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev~ 162 (225)
||+ +.+||+||++||||+.+..+. .+.+++.+.|.....+....++++|+|.+..+ ..+.++++|+.
T Consensus 77 gE~---------~~~aA~REl~EE~Gl~~~~~~--~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~ 145 (180)
T cd03676 77 GEG---------PEETLVKECDEEAGLPEDLVR--QLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVE 145 (180)
T ss_pred CCC---------HHHHHHHHHHHHhCCCHHHHh--hceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEe
Confidence 999 799999999999999976432 24556655555431122233677787876543 23566788999
Q ss_pred cEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303 163 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 202 (225)
Q Consensus 163 ~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 202 (225)
++.|++++|+.+++.++ .|+|+...+.-+||..
T Consensus 146 ~~~~~~~~el~~~l~~g-------~~~~~~~lv~~~~~~~ 178 (180)
T cd03676 146 SFRLLTIDEVLRALKEG-------EFKPNCALVTLDFLIR 178 (180)
T ss_pred EEEEECHHHHHHHHHcC-------CCCcccHhHHHHHHhh
Confidence 99999999999999885 6999999999999764
No 7
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.97 E-value=2.9e-30 Score=209.78 Aligned_cols=157 Identities=54% Similarity=0.848 Sum_probs=129.2
Q ss_pred EEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhh
Q 027303 13 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEE 92 (225)
Q Consensus 13 ~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~ 92 (225)
+++||++|+++|..+|+++|. +.+++|++++++|+|++|++||+||+.++..+||+|++|+||+++.||+
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~-----~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~----- 70 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHL-----QETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL----- 70 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhh-----cCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCcccH-----
Confidence 479999999999999998874 4799999999999999999999999999999999999999999999996
Q ss_pred hhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHH
Q 027303 93 NALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQL 172 (225)
Q Consensus 93 ~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel 172 (225)
+||+||++|||||.+.... +..++.+.|......+ .+.++++|.+..+..+.++++|+.+++|++++++
T Consensus 71 ------eaa~REl~EE~Gl~~~~~~---l~~~~~~~~~~~~~~g--~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el 139 (158)
T TIGR02150 71 ------EAAIRRLREELGIPADDVP---LTVLPRFSYRARDAWG--EHELCPVFFARAPVPLNPNPEEVAEYRWVSLEEL 139 (158)
T ss_pred ------HHHHHHHHHHHCCCccccc---eEEcceEEEEEecCCC--cEEEEEEEEEecCCcccCChhHeeeEEEeCHHHH
Confidence 8999999999999987432 3344444444332211 2566677777665556677789999999999999
Q ss_pred HHHHHhccCCCCCcccChhHHHH
Q 027303 173 KELLRKADAGEEGLKLSPWFRLV 195 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~p~~~~~ 195 (225)
.+++..+ +..++||+..+
T Consensus 140 ~~~~~~~-----~~~~~p~~~~~ 157 (158)
T TIGR02150 140 KEILKAP-----WAGFSPWFRIQ 157 (158)
T ss_pred HHHHhcC-----ccccCHhhHHh
Confidence 9999875 57899998754
No 8
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.96 E-value=8.7e-28 Score=199.30 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=128.4
Q ss_pred CccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCC
Q 027303 8 DTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRES 87 (225)
Q Consensus 8 ~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs 87 (225)
.+.|++++||+||+++|..+|..+|. .++.|+++.++++|++|++||++|+..+..+||+|+.++||++++||+
T Consensus 7 ~~~e~~~~~d~~~~~~g~~~~~~~~~------~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs 80 (180)
T PRK15393 7 ASTEWVDIVNENNEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ 80 (180)
T ss_pred CCceEEEEECCCCCEeeEEEHHHHhh------CCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCC
Confidence 56899999999999999999998874 788999999999999999999999887878899998666999999999
Q ss_pred hhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEe
Q 027303 88 ELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYV 167 (225)
Q Consensus 88 ~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv 167 (225)
+++||+||++||||+.+.. +.+++.+.|.... . ....++|.+..+....++++|+.+++|+
T Consensus 81 ---------~~eAA~REL~EEtGl~~~~-----~~~~~~~~~~~~~----~-~~~~~~f~~~~~~~~~~~~~E~~~~~W~ 141 (180)
T PRK15393 81 ---------LLESARREAEEELGIAGVP-----FAEHGQFYFEDEN----C-RVWGALFSCVSHGPFALQEEEVSEVCWM 141 (180)
T ss_pred ---------HHHHHHHHHHHHHCCCCcc-----ceeceeEEecCCC----c-eEEEEEEEEEeCCCCCCChHHeeEEEEC
Confidence 7999999999999998653 3345555444221 1 2233455554455566778899999999
Q ss_pred CHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303 168 NREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 202 (225)
Q Consensus 168 ~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 202 (225)
+++++.+++. .|+|.....+..|+..
T Consensus 142 ~~~el~~~~~---------~~~~~~~~~l~~~l~~ 167 (180)
T PRK15393 142 TPEEITARCD---------EFTPDSLKALALWLTR 167 (180)
T ss_pred CHHHHhhhhh---------hcCccHHHHHHHHHHh
Confidence 9999999853 3777777777777443
No 9
>PLN02791 Nudix hydrolase homolog
Probab=99.96 E-value=3.6e-28 Score=236.87 Aligned_cols=160 Identities=26% Similarity=0.347 Sum_probs=134.0
Q ss_pred ccceEEEEcCCCCEeee-eecccccchhhcccCCcceeEEEEEEEeC-CCeEEEeeecCCCCCCCCCeeeccccCCCCCC
Q 027303 9 TFDRCILVDENDRVVGH-ENKYNCHLMEKIESLNLLHRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE 86 (225)
Q Consensus 9 ~~E~~~~~d~~~~~~g~-~~r~~~~~~~~~~~~~~~h~~v~v~i~d~-~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE 86 (225)
++|+|++||++|+++|. .+|.+||. .|++|++++++|+|. +|++|||||+..|..|||.|++++|||++.||
T Consensus 2 ~eE~~DI~De~g~~~G~~~~R~evH~------~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGE 75 (770)
T PLN02791 2 MEEHLDVLTAAGEKTGVSKPRGEVHR------DGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGD 75 (770)
T ss_pred CceEEEEECCCCCCCCccccHHhhcc------CCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCC
Confidence 57999999999999999 58888885 799999999999996 68999999999999999999999999999999
Q ss_pred ChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcC-CCCCCcceEEEEEEEEecC-----ccccCCccc
Q 027303 87 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP-SDGKWGEHELDYLLFIVRD-----VSVNPNPDE 160 (225)
Q Consensus 87 s~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~-~~~~~~e~~~~~v~~~~~~-----~~~~~~~~E 160 (225)
+ +.+||+||++||+||.+. .+.+.+++.+.+... ..+.+.+++++++|++... ..+.++++|
T Consensus 76 s---------~~eAA~REL~EELGI~l~---~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eE 143 (770)
T PLN02791 76 T---------SLLSAQRELEEELGIILP---KDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESE 143 (770)
T ss_pred C---------HHHHHHHHHHHHhCCCCC---hhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhh
Confidence 9 799999999999999864 334666776554432 3345667889988886532 145678999
Q ss_pred cccEEEeCHHHHHHHHHhccCCCCCcccChh
Q 027303 161 VAEYKYVNREQLKELLRKADAGEEGLKLSPW 191 (225)
Q Consensus 161 v~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~ 191 (225)
|++++|++++|+.+++... +..|+||
T Consensus 144 V~~v~wvsl~El~~~l~~~-----~~~fvP~ 169 (770)
T PLN02791 144 VSAVKYMSIEEYKSALAKE-----DPAYVPY 169 (770)
T ss_pred hheeEEEcHHHHHHHHhcC-----CCceeec
Confidence 9999999999999999874 3566665
No 10
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.92 E-value=1.1e-24 Score=173.66 Aligned_cols=135 Identities=25% Similarity=0.364 Sum_probs=106.1
Q ss_pred ceeEEEEEEEeCC---CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303 43 LHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 119 (225)
Q Consensus 43 ~h~~v~v~i~d~~---g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~ 119 (225)
+|++|+++|+|++ +++|+++|+..+..+||.|++|+||++++||+ +++||+||++||||+.+. ..
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt---------~~~aa~REl~EEtGl~~~---~~ 68 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGET---------PLEDGIRELEEELGLDVS---AD 68 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCC---------HHHHHHHHHHHHhCCCCC---hH
Confidence 6999999999987 89999999988888999999977999999999 899999999999999875 23
Q ss_pred ceeeeeEEEEEcCCCCCCcceEEEEEEEEecC---ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHH
Q 027303 120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 194 (225)
Q Consensus 120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~---~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~ 194 (225)
++.+++.+.+.....+....+.+.++|++... ..+.++++|+.+++|++++++.+++... |..|+||+..
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~-----~~~~~~~~~~ 141 (144)
T cd04692 69 DLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEEE-----DHKYQYYDGE 141 (144)
T ss_pred HeEEeeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHcC-----CCCCCccccc
Confidence 45667766554431112222445566666542 3445677899999999999999999886 5689988754
No 11
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=3.5e-22 Score=155.79 Aligned_cols=116 Identities=28% Similarity=0.352 Sum_probs=93.4
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
+++.++++|++|++||++|+..+..+||+|++|+||++++||+ +.+||+||++||||+.+. .+..+
T Consensus 1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~---------~~~aa~REl~EEtGl~~~-----~l~~~ 66 (126)
T cd04697 1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES---------YLQNAQRELEEELGIDGV-----QLTPL 66 (126)
T ss_pred CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC---------HHHHHHHHHHHHHCCCcc-----ccEEe
Confidence 4788999999999999999988878899999977999999999 799999999999999976 34556
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhc
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+.+.+.... .....++|.+.....+.++++|+.+++|++++++.+++..+
T Consensus 67 ~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 116 (126)
T cd04697 67 GLFYYDTDG-----NRVWGKVFSCVYDGPLKLQEEEVEEITWLSINEILQFKEGE 116 (126)
T ss_pred eEEEecCCC-----ceEEEEEEEEEECCCCCCCHhHhhheEEcCHHHHHHHhhcC
Confidence 666554221 12334556555555556777899999999999999998886
No 12
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=4.2e-22 Score=154.99 Aligned_cols=123 Identities=31% Similarity=0.485 Sum_probs=94.0
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
++|.+++++++|++||+||+..+..+||.|++|+||++++||+ + +||+||++||||+.+.. .++.++
T Consensus 1 ~~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~---------~-~aa~REl~EEtGl~~~~---~~~~~~ 67 (127)
T cd04693 1 LVVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGET---------S-TAAEREVKEELGLELDF---SELRPL 67 (127)
T ss_pred CeEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCC---------H-HHHHHHHHHHhCCCcCh---hhcEEE
Confidence 3678888998899999999988878999999998999999999 9 99999999999999762 234555
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~ 193 (225)
+++.+..+ + +...++|.+.. .....++++|+.+++|++++++.+++.++ .++|++.
T Consensus 68 ~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~-------~~~~~~~ 124 (127)
T cd04693 68 FRYFFEAE---G---FDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHG-------EFTPYFE 124 (127)
T ss_pred EEEEeecC---C---eEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcC-------Ccccccc
Confidence 55544322 1 22233343332 34555677899999999999999999886 4666554
No 13
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.84 E-value=5e-20 Score=145.99 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=78.7
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
++++++++++++|++||+||+..+..+||.|++| ||++++||| +.+||+||++||||+++.......+.+
T Consensus 3 ~r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~~~~~ 72 (141)
T PRK15472 3 QRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLLLTEITPWTF 72 (141)
T ss_pred ceeEEEEEEecCCEEEEEEecccCCCCCCceeCC-cccCCCCCC---------HHHHHHHHHHHHHCCceeeeeeccccc
Confidence 4677777777789999999988777899999999 899999999 899999999999999864211111111
Q ss_pred eeEEEE-EcCCCCCCcceEEEEE---EEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303 124 LGRILY-KAPSDGKWGEHELDYL---LFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 124 l~~~~y-~~~~~~~~~e~~~~~v---~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
...+.+ ..+. +.. ..+.++ |.+.. ...+.+ .+|+.+++|++++++.++
T Consensus 73 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 73 RDDIRTKTYAD--GRK-EEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred cccceeEEecC--CCc-eeEEEEEEEEEeecCCCcccC-ChhhheEEEccHHHhccc
Confidence 111111 1111 111 122222 22322 223333 478999999999999886
No 14
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.81 E-value=6.5e-19 Score=140.67 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=89.4
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
.+.+|.+++++.+|++||+||.. .||.|++| ||+++.||| +.+||+||++||||+++... .+.
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~---~~~ 68 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSV-TGSLEEGET---------PAQTAIREVKEETGIDVLAE---QLT 68 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecC----CCCcEeCC-cccCCCCCC---------HHHHHHHHHHHHhCcCcccc---cee
Confidence 45678888999889999998863 36899998 999999999 89999999999999998311 111
Q ss_pred eee---EEEEEc------CCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHH
Q 027303 123 PLG---RILYKA------PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193 (225)
Q Consensus 123 ~l~---~~~y~~------~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~ 193 (225)
.++ ...|.. ....+.. +..+++|.+.......+..+|+.+++|++++++.++ .+.|..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~-----------~~~~~~~ 136 (148)
T PRK09438 69 LIDCQRSIEYEIFPHWRHRYAPGVT-RNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAAL-----------TKSWSNA 136 (148)
T ss_pred ecccccccccccchhhhhccccccC-CceeEEEEEecCCCCccccCcccceeeCCHHHHHHH-----------hcChhHH
Confidence 111 011110 0011111 455667776643333344569999999999999997 3556777
Q ss_pred HHHHHHHH
Q 027303 194 LVVDNFLF 201 (225)
Q Consensus 194 ~~~~~~l~ 201 (225)
.+++.++.
T Consensus 137 ~~l~~~~~ 144 (148)
T PRK09438 137 EAIEQLVI 144 (148)
T ss_pred HHHHHHHH
Confidence 77777643
No 15
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.80 E-value=7.1e-19 Score=135.90 Aligned_cols=120 Identities=30% Similarity=0.444 Sum_probs=90.9
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
+|++|++++++.+|++||.||+......++.|.+| ||+++.||+ +.+||+||+.||||+.+. ...
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~---------~~~aa~REl~EE~g~~~~-----~~~ 65 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELP-GGGIEPGES---------PEEAARRELKEETGLDVS-----PLE 65 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESS-EEEECTTSH---------HHHHHHHHHHHHHSEEEE-----EEE
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCc---------hhhhHHhhhhhcccceec-----ccc
Confidence 58999999999989999999997766689999998 999999999 899999999999999974 233
Q ss_pred eeeEEEEEcCCCCCCcceEEEEEEEEe--cC-ccccCCccccccEEEeCHHHHHHHHHhc
Q 027303 123 PLGRILYKAPSDGKWGEHELDYLLFIV--RD-VSVNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~--~~-~~~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
..+.+.+........ ....++|.+. .. .....+..|+.+++|++++++.++...+
T Consensus 66 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 123 (134)
T PF00293_consen 66 LLGLFSYPSPSGDPE--GEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNG 123 (134)
T ss_dssp EEEEEEEEETTTESS--EEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred cceeeeecccCCCcc--cEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCc
Confidence 455555555443221 2333334333 22 2344555599999999999999997764
No 16
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=5.5e-19 Score=136.64 Aligned_cols=112 Identities=18% Similarity=0.206 Sum_probs=81.9
Q ss_pred eeEEEEEEEeCCCeEEEeeecCC-CCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGT-KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~-k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
|.++++++.++ |++||++|+.. +..+||.|++| ||+++.||+ +++||+||++||||+++... .+.
T Consensus 1 ~~v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~---~~~ 66 (122)
T cd04682 1 SGVALALLIGD-GRLLLQLRDDKPGIPYPGHWDLP-GGHREGGET---------PLECVLRELLEEIGLTLPES---RIP 66 (122)
T ss_pred CceEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCC-CccccCCCC---------HHHHHHHHHHHHhCCccccc---ccc
Confidence 45677777776 99999999876 67899999999 999999999 89999999999999997622 122
Q ss_pred eeeEEEEEcCCCCCCcceEEEEEEEEecC-c-cccCCccccccEEEeCHHHHHHHH
Q 027303 123 PLGRILYKAPSDGKWGEHELDYLLFIVRD-V-SVNPNPDEVAEYKYVNREQLKELL 176 (225)
Q Consensus 123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~-~~~~~~~Ev~~~~Wv~~eel~~~~ 176 (225)
+... |.... .....++|.+... . ....+.+|+.+++|++++++.+..
T Consensus 67 ~~~~--~~~~~-----~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 67 WFRV--YPSAS-----PPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred eeEe--cccCC-----CCceEEEEEEEEecCCCccccCchhheeecccHHHHhhcc
Confidence 2222 22211 1334455655542 2 245677899999999999997763
No 17
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.9e-18 Score=134.44 Aligned_cols=128 Identities=23% Similarity=0.222 Sum_probs=88.7
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.+|.+++++++|++||++|.... ++|.|++| ||+++.||+ +.+||.||++||||+.+.. +.++
T Consensus 2 ~av~~~i~~~~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~-----~~~~ 64 (130)
T cd04681 2 AAVGVLILNEDGELLVVRRAREP--GKGTLDLP-GGFVDPGES---------AEEALIREIREETGLKVTE-----LSYL 64 (130)
T ss_pred ceEEEEEEcCCCcEEEEEecCCC--CCCcEeCC-ceeecCCCC---------HHHHHHHHHHHHhCCcccc-----eeEE
Confidence 36788889988999999997543 58999998 999999999 8999999999999999763 3344
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEecCc-cccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 200 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l 200 (225)
+.+....+.. +...+.+.++|.+.... ....+.+|+.+++|++++++... ....|..+..+++||
T Consensus 65 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~----------~~~~~~~~~~~~~~~ 130 (130)
T cd04681 65 FSLPNTYPYG-GMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIELE----------NFAFPSIRQAVERWL 130 (130)
T ss_pred EeecceeeeC-CceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCCcc----------cCCcHHHHHHHHhhC
Confidence 4432222211 11223333455555432 34456689999999999998521 123355667777764
No 18
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=3.1e-18 Score=132.77 Aligned_cols=111 Identities=16% Similarity=0.246 Sum_probs=77.2
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.++++++++.+|++||+||.. ++|.|.+| ||++++||| +.+||+||++||||+++..+. ++
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~-----~~ 63 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK----WRGLWGVP-GGKVEWGET---------LEEALKREFREETGLKLRDIK-----FA 63 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC----CCCcEeCC-ceeccCCCC---------HHHHHHHHHHHHhCCcccccc-----eE
Confidence 467888899889999998752 57999998 999999999 799999999999999986432 22
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEecCc-cccCCccccccEEEeCHHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
+...+.......-..+.+.+.|.+.... .+.. .+|+.+++|+|++++.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 64 MVQEAIFSEEFHKPAHFVLFDFFARTDGTEVTP-NEEIVEWEWVTPEEALDY 114 (125)
T ss_pred EEEEEeccCCCCCccEEEEEEEEEEecCCcccC-CcccceeEEECHHHHhcC
Confidence 2222221111000124344445555432 3333 468999999999999876
No 19
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.78 E-value=3.3e-18 Score=139.49 Aligned_cols=118 Identities=16% Similarity=0.162 Sum_probs=83.4
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
.+.+|.++|.+.+|++||+||+.. ..+|.|++| ||++++||| +++||+||++||||+.+... . ..
T Consensus 16 ~~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lP-GG~VE~GEt---------~~~Aa~REl~EEtGl~v~~~-~--~~ 80 (159)
T PRK15434 16 PLISLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLPIT-A--GQ 80 (159)
T ss_pred ceEEEEEEEECCCCEEEEEEccCC--CCCCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccccc-c--ce
Confidence 456888899988899999999742 368999999 999999999 89999999999999986421 1 12
Q ss_pred eeeEEE--EEcC-CCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303 123 PLGRIL--YKAP-SDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 123 ~l~~~~--y~~~-~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
+++.+. |... ....+..+.++.+|.+.. .+.+.++++|+.+++|++++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 81 FYGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred EEEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhc
Confidence 232221 2211 111222244555665554 3455566779999999999999875
No 20
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.78 E-value=6.8e-18 Score=132.57 Aligned_cols=115 Identities=19% Similarity=0.127 Sum_probs=87.0
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
|++|.++++++++++||.+|.... ..++.|++| ||+++.||+ +.+||+||++||||+.+.. +..
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~-~~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~-----~~~ 65 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPP-VGGWLLELP-AGLIDPGED---------PEEAARRELEEETGYEAGD-----LEK 65 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecC-CCCEEEEeC-CccCCCCCC---------HHHHHHHHHHHHHCCCccc-----eEE
Confidence 578999999999999998765433 357899998 999999999 8999999999999999862 345
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecCcc---ccCCccccccEEEeCHHHHHHHHHhc
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRDVS---VNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~---~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
++.+.+. . +.. +...++|.+..... ...+++|+.+++|++++++.+++..+
T Consensus 66 ~~~~~~~--~--~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 66 LGSFYPS--P--GFS-DERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred EeeEecC--C--ccc-CccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 5554332 1 111 33445565554322 45667889999999999999999886
No 21
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=4.4e-18 Score=131.79 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=83.2
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
+.+++++|++.+|++||++|+.. ..+|.|++| ||++++||+ +.+||+||++||||+.+... .+
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~eaa~RE~~EEtGl~~~~~-----~~ 64 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIP-GGKVDWMEA---------VEDAVVREIEEETGLSIHST-----RL 64 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCC-eeeccCCCC---------HHHHHHHHHHHHHCCCcccc-----eE
Confidence 46788999998899999999743 247999999 999999999 89999999999999998642 33
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEec-Cccc-cCCccccccEEEeCHHHHHHHHHh
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~-~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
++.+.+..... ..+.+.++|.+.. +... ..+++|+.+++|++++++.+.+..
T Consensus 65 ~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~~ 118 (125)
T cd04679 65 LCVVDHIIEEP---PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLTR 118 (125)
T ss_pred EEEEeecccCC---CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhHH
Confidence 44433222211 1244555666554 2222 245578999999999999875543
No 22
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.78 E-value=9e-18 Score=129.97 Aligned_cols=123 Identities=26% Similarity=0.276 Sum_probs=87.2
Q ss_pred eEEEEEEEeCC---CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303 45 RAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 121 (225)
Q Consensus 45 ~~v~v~i~d~~---g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l 121 (225)
.++++++++.+ +++||++|... +.|.+| ||++++||+ +.+||.||++||||+.+..+
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs---------~~~aa~REl~EEtGl~~~~~----- 61 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGET---------PPEAAVREVEEETGIRAEVG----- 61 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCC---------HHHHHHHHHhhhhCCceEec-----
Confidence 35677777765 79999998643 799999 999999999 89999999999999997632
Q ss_pred eeeeEEEEEcCCCCCCcceEEEEEEEEec-CccccC-CccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303 122 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNP-NPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 199 (225)
Q Consensus 122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~-~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (225)
..++.+.|..+..+... +..+++|.+.. ...... +++|+.+++|+|++++.+++ ..|..+.+++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~-----------~~~~~~~~l~~~ 129 (131)
T cd03673 62 DPLGTIRYWFSSSGKRV-HKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRL-----------SYPNDRELLRAA 129 (131)
T ss_pred ceEEEEEEeccCCCCCc-ceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHc-----------CCHhHHHHHHHh
Confidence 34666666554322222 44455565543 233333 56789999999999998863 245556666655
No 23
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1e-17 Score=134.30 Aligned_cols=125 Identities=24% Similarity=0.401 Sum_probs=88.7
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.+++++++|.++++||+||+..+..+||.|++| |||+++||+ +++||+||++||+|+.+..... .+..+
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~---------~~~aa~RE~~EE~gi~~~~~~~-~~~~l 70 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPP-GGHVELGEN---------LLEAGLRELNEETGLTLDPIDK-SWQVL 70 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECc-ccccCCCCC---------HHHHHHHHHHHHHCCCcccccc-ceeEE
Confidence 367888899999999999997776799999999 999999999 7999999999999998763211 12344
Q ss_pred eEEEEEcCC--CCCC--cceEEEEEEEEecCc------cccCCccccccEEEeCHHHHHHHHHhcc
Q 027303 125 GRILYKAPS--DGKW--GEHELDYLLFIVRDV------SVNPNPDEVAEYKYVNREQLKELLRKAD 180 (225)
Q Consensus 125 ~~~~y~~~~--~~~~--~e~~~~~v~~~~~~~------~~~~~~~Ev~~~~Wv~~eel~~~~~~~~ 180 (225)
+.+.+..+. ..+. ..+...|++...... .+.++++|+.+++|++++++.+++...+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~~ 136 (143)
T cd04694 71 GLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAED 136 (143)
T ss_pred eeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhhc
Confidence 443222221 1111 223333444333211 2446678999999999999999987653
No 24
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.77 E-value=2.9e-18 Score=138.91 Aligned_cols=112 Identities=21% Similarity=0.149 Sum_probs=82.7
Q ss_pred eeEEEEEEEeCC--CeEEEeeecCCCCCCCCCeeeccccCCCCC-CChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303 44 HRAFSVFLFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 120 (225)
Q Consensus 44 h~~v~v~i~d~~--g~vLL~rRs~~k~~~pg~W~~p~gG~ve~g-Es~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~ 120 (225)
|.+|.+++++.+ +++||+||+..+..+||.|++| ||++++| |+ +.+||+||++||||+.+..
T Consensus 2 ~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs---------~~eaa~REl~EEtGl~~~~----- 66 (157)
T cd03426 2 RAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDED---------PVATALREAEEEIGLPPDS----- 66 (157)
T ss_pred ceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCC---------HHHHHHHHHHHHhCCCccc-----
Confidence 467888888765 6899999998777789999999 9999999 99 8999999999999999763
Q ss_pred eeeeeEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCccccccEEEeCHHHHHHH
Q 027303 121 FTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 121 l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
+..++.+....... ....++|++... ..+.++++|+.+++|++++++.+.
T Consensus 67 ~~~l~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 67 VEVLGRLPPYYTRS-----GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred eEEEEECCCccccC-----CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 33344332111111 112334444432 256677889999999999999886
No 25
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.77 E-value=9.2e-18 Score=129.41 Aligned_cols=112 Identities=18% Similarity=0.115 Sum_probs=80.0
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
++.++++++ +++||.+|+... ++|.|.+| ||+++.||+ +.+||+||++||||+.+.. +.+++
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~-----~~~~~ 63 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLP-GGGIEPGES---------PEEALHREVLEETGLTVEI-----GRRLG 63 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHhCcEeec-----ceeee
Confidence 456677776 999999988553 78999999 999999999 8999999999999999763 23344
Q ss_pred EEEEEcCCCCC-CcceEEEEEEEEecCccc---cCCccccccEEEeCHHHHHHH
Q 027303 126 RILYKAPSDGK-WGEHELDYLLFIVRDVSV---NPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 126 ~~~y~~~~~~~-~~e~~~~~v~~~~~~~~~---~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
.+.+....... ...+.+.++|.+...... ..+.+|..+++|++++++.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 64 SASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred EEEEEEECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhcc
Confidence 43332221111 112556677766653322 345678899999999999865
No 26
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.77 E-value=1.3e-17 Score=132.97 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=87.0
Q ss_pred CCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303 40 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 119 (225)
Q Consensus 40 ~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~ 119 (225)
....-+++++++++.++++||++|... ..+|.|++| ||++++||+ +++||+||++||||+++..
T Consensus 9 ~~~~~~av~~vv~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~---- 72 (142)
T cd04700 9 VEVEARAAGAVILNERNDVLLVQEKGG--PKKGLWHIP-SGAVEDGEF---------PQDAAVREACEETGLRVRP---- 72 (142)
T ss_pred cceeeeeEEEEEEeCCCcEEEEEEcCC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHhhCceeec----
Confidence 445668899999998889999887543 257999999 999999999 8999999999999999763
Q ss_pred ceeeeeEEEEEcCCCCCCcceEEEEEEEEecC-cccc-CCccccccEEEeCHHHHHHHHHhc
Q 027303 120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN-PNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~-~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+.+++.+.+..+. + .....++|.+... .... ...+|+.+++|++++++.+++..+
T Consensus 73 -~~~~~~~~~~~~~--~--~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 73 -VKFLGTYLGRFDD--G--VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred -cEEEEEEEEEcCC--C--cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhccccc
Confidence 2345554433322 1 1234456666542 2222 224789999999999999998774
No 27
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.76 E-value=2.3e-17 Score=130.62 Aligned_cols=131 Identities=24% Similarity=0.221 Sum_probs=86.3
Q ss_pred eeEEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 44 HRAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 44 h~~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
|.+++++++|.+ +++||+||+. .|.|.+| ||++++||+ +++||+||++||||+.+..+....+.
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~~~~~ 66 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRK-----LGSWLQP-GGHIDPDES---------LLEAALRELREETGIELLGLRPLSVL 66 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcC-----CCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCCcccceecccc
Confidence 789999999987 8999998864 3789998 999999999 89999999999999987643211000
Q ss_pred eeeEEEEEcCCCCC--CcceEEEEEEEEec-Ccccc-CCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303 123 PLGRILYKAPSDGK--WGEHELDYLLFIVR-DVSVN-PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 198 (225)
Q Consensus 123 ~l~~~~y~~~~~~~--~~e~~~~~v~~~~~-~~~~~-~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~ 198 (225)
.-..+......... ...+.+..+|.+.. .+... ++++|+.+++|++++++..+ .+.+..+.++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~~i~~ 135 (138)
T cd03674 67 VDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASL-----------ELPEDVRRLVEK 135 (138)
T ss_pred ccceeEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhc-----------cCCHHHHHHHHH
Confidence 00011111111100 01122334555543 23333 36689999999999999764 356677777776
Q ss_pred HH
Q 027303 199 FL 200 (225)
Q Consensus 199 ~l 200 (225)
.|
T Consensus 136 ~~ 137 (138)
T cd03674 136 AL 137 (138)
T ss_pred Hh
Confidence 54
No 28
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.76 E-value=1.1e-17 Score=133.82 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=83.0
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
..+++++|+|.+|++||+||... .++|.|.+| ||+++.||| +++||+||++||||+.+... .+.+
T Consensus 12 ~v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lP-GG~ve~gEs---------~~~aa~RE~~EE~Gl~v~~~---~~~~ 76 (144)
T cd03430 12 LVSIDLIVENEDGQYLLGKRTNR--PAQGYWFVP-GGRIRKNET---------LTEAFERIAKDELGLEFLIS---DAEL 76 (144)
T ss_pred eEEEEEEEEeCCCeEEEEEccCC--CCCCcEECC-CceecCCCC---------HHHHHHHHHHHHHCCCcccc---cceE
Confidence 35788899998899999999753 368999999 999999999 89999999999999987632 1233
Q ss_pred eeEEEEEcCC---CCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303 124 LGRILYKAPS---DGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 124 l~~~~y~~~~---~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
++.+.+.... ......+.+..+|.+.. .+.+..+++|+.+++|++++++.++
T Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 77 LGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred EEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence 4443322111 11112234444555543 2334556789999999999999864
No 29
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.76 E-value=1.1e-17 Score=130.32 Aligned_cols=114 Identities=22% Similarity=0.202 Sum_probs=81.8
Q ss_pred eEEEEEEEeC--CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 45 RAFSVFLFNS--KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 45 ~~v~v~i~d~--~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
+++++++++. ++++||+||+.. ++|.|++| ||+++.||+ +.+||+||++||||+.+..+ .
T Consensus 2 ~~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~P-gG~ve~~Es---------~~~aa~RE~~EE~Gl~~~~~-----~ 63 (129)
T cd04664 2 RSVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSV-TGGIEDGES---------PAEAARREVAEETGLDPERL-----T 63 (129)
T ss_pred cEEEEEEEEeCCCCEEEEEEeCCC---CCCccccc-CcccCCCCC---------HHHHHHHHHHHHHCCChhhe-----E
Confidence 5788899987 899999999854 78999998 999999999 79999999999999997532 2
Q ss_pred eeeEEE---EEcCCCCCCcceEEEEEEEEecCcc-ccCCccccccEEEeCHHHHHHHHHh
Q 027303 123 PLGRIL---YKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 123 ~l~~~~---y~~~~~~~~~e~~~~~v~~~~~~~~-~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
.+.... +......+ .+...++|.+..... ....++|+.+++|++++++.+++..
T Consensus 64 ~~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 121 (129)
T cd04664 64 LLDRGASIAFVEFTDNG--RVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLW 121 (129)
T ss_pred EEeecccccccccCCCc--eEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcC
Confidence 222221 11111111 134456666664322 2345578999999999999988543
No 30
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1e-17 Score=128.54 Aligned_cols=114 Identities=22% Similarity=0.284 Sum_probs=80.7
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
+|.+++.+ +|++||+||...+ .++|.|++| ||++++||+ +.+||+||++||||+.+. ...+.+++
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~-~~~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~v~---~~~~~~~~ 66 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTG-YMDGQWALP-AGHLEKGED---------AVTAAVREAREEIGVTLD---PEDLRLAH 66 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCC-CCCCeEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCccC---hhheEEEE
Confidence 46667766 4899999987544 458999999 999999999 799999999999999875 22345566
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEec-Cccc-cCCccccccEEEeCHHHHHHHHHh
Q 027303 126 RILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 126 ~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~-~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
.+.+.... ..+.+.++|.+.. .+.+ ..+++|+.+++|++++++.+.+..
T Consensus 67 ~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~ 117 (120)
T cd04683 67 TMHRRTED----IESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTVD 117 (120)
T ss_pred EEEecCCC----CceEEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchhcc
Confidence 55443221 1244444555543 2322 234578899999999999876543
No 31
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.76 E-value=2.5e-17 Score=128.92 Aligned_cols=126 Identities=20% Similarity=0.222 Sum_probs=88.1
Q ss_pred EEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeE
Q 027303 47 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 126 (225)
Q Consensus 47 v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~ 126 (225)
+++++. .++++||.+|... .++.|.+| ||++++||+ +.+||.||++||||+++... ..++.
T Consensus 3 v~~ii~-~~~~vLlv~r~~~---~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~~~~ 63 (134)
T cd03675 3 VAAVVE-RDGRFLLVEEETD---GGLVFNQP-AGHLEPGES---------LIEAAVRETLEETGWHVEPT-----ALLGI 63 (134)
T ss_pred EEEEEE-ECCEEEEEEEccC---CCceEECC-CccCCCCCC---------HHHHHHHHHHHHHCcccccc-----eEEEE
Confidence 444444 4589999988643 46899999 999999999 89999999999999998632 23444
Q ss_pred EEEEcCCCCCCcceEEEEEEEEecCc-cc-cCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303 127 ILYKAPSDGKWGEHELDYLLFIVRDV-SV-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 202 (225)
Q Consensus 127 ~~y~~~~~~~~~e~~~~~v~~~~~~~-~~-~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 202 (225)
+.+..+..+. ....++|.+.... .. ....+|+.++.|++++++.++... ..+|....++++||.+
T Consensus 64 ~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~--------~~~~~~~~~i~~~l~~ 130 (134)
T cd03675 64 YQWTAPDSDT---TYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAAR--------LRSPLVLRCIEDYLAG 130 (134)
T ss_pred EEeecCCCCe---eEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhh--------hcCchHHHHHHHHHhc
Confidence 4444332111 2233445554322 22 234468899999999999998653 4688888999988754
No 32
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.76 E-value=1.2e-17 Score=130.99 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=87.3
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
+++.+++.++ |++||++|+... ++|.|.+| ||+++.||+ +.+||+||++||||+.+... ..+
T Consensus 2 ~~~~~~i~~~-~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~~ 63 (137)
T cd03427 2 LTTLCFIKDP-DKVLLLNRKKGP--GWGGWNGP-GGKVEPGET---------PEECAIRELKEETGLTIDNL-----KLV 63 (137)
T ss_pred eEEEEEEEEC-CEEEEEEecCCC--CCCeEeCC-ceeCCCCCC---------HHHHHHHHHHHhhCeEeecc-----eEE
Confidence 4566777775 899999998654 78999999 999999999 89999999999999997632 345
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 200 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l 200 (225)
+.+.+..+.. ..+...++|.+........+++|..+++|++++++.++ .+.+..+.+++.|+
T Consensus 64 ~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~ 125 (137)
T cd03427 64 GIIKFPFPGE---EERYGVFVFLATEFEGEPLKESEEGILDWFDIDDLPLL-----------PMWPGDREWLPLML 125 (137)
T ss_pred EEEEEEcCCC---CcEEEEEEEEECCcccccCCCCccccceEEcHhhcccc-----------cCCCCcHHHHHHHh
Confidence 6665554321 12455566766543222223456678999999999765 23444555566664
No 33
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.76 E-value=2.4e-17 Score=131.85 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=81.0
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
+|.++++++++.++++||+||+..+ |.|++| ||++++||+ +.+||.||++||||+++... .
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~P-gG~~e~gE~---------~~~aA~REv~EEtGl~~~~~-----~ 62 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFP-QGGIDEGED---------PEQAALRELEEETGLDPDSV-----E 62 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC----CCEECC-cCCCCCCcC---------HHHHHHHHHHHHHCCCcCce-----E
Confidence 4578899999988999999998543 899999 999999999 89999999999999997632 2
Q ss_pred eeeE----EEEEcCCC---CCC---cceEEEEEEEEecC---ccccCC---ccccccEEEeCHHHHHHHHHh
Q 027303 123 PLGR----ILYKAPSD---GKW---GEHELDYLLFIVRD---VSVNPN---PDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 123 ~l~~----~~y~~~~~---~~~---~e~~~~~v~~~~~~---~~~~~~---~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
.++. +.|..+.. ..+ ......++|.+... ..+.++ ++|+.+++|++++++.+++..
T Consensus 63 ~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~ 134 (147)
T cd03671 63 IIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVP 134 (147)
T ss_pred EEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchh
Confidence 2322 33443321 011 01223344443321 233332 579999999999999997543
No 34
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=2.3e-17 Score=127.05 Aligned_cols=107 Identities=22% Similarity=0.202 Sum_probs=76.8
Q ss_pred EEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEE
Q 027303 48 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 127 (225)
Q Consensus 48 ~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~ 127 (225)
.+++++. +++||+||+..+..+||.|++| ||++++||+ +++||+||++||||+++.. +.++..+
T Consensus 4 ~~vi~~~-~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----~~~l~~~ 67 (117)
T cd04691 4 VGVLFSD-DKVLLERRSLTKNADPGKLNIP-GGHIEAGES---------QEEALLREVQEELGVDPLS-----YTYLCSL 67 (117)
T ss_pred EEEEEEC-CEEEEEEeCCCCCCCCCeEECc-ceeecCCCC---------HHHHHHHHHHHHHCCCccc-----ceEEEEE
Confidence 3344554 8999999987665689999998 999999999 8999999999999999642 3445444
Q ss_pred EEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHh
Q 027303 128 LYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 128 ~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
.+. . . .....++|.+.. ++.+ +.+|+.+++|++++++..+...
T Consensus 68 ~~~--~--~--~~~~~~~~~~~~~~~~~--~~~E~~~~~W~~~~~l~~~~~~ 111 (117)
T cd04691 68 YHP--T--S--ELQLLHYYVVTFWQGEI--PAQEAAEVHWMTANDIVLASEA 111 (117)
T ss_pred ecc--C--C--CeEEEEEEEEEEecCCC--CcccccccEEcCHHHcchhhhh
Confidence 322 1 1 133445555543 3333 3478999999999999876443
No 35
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=2.9e-17 Score=127.69 Aligned_cols=112 Identities=22% Similarity=0.339 Sum_probs=80.6
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
+.++.++|+|.+|++||++|... .++|.|.+| ||++++||+ +.+||.||++||||+++.. +..
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~P-GG~ve~gEt---------~~~Aa~REl~EE~Gl~~~~-----~~~ 64 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALP-GGHLEFGES---------FEECAAREVLEETGLHIEN-----VQF 64 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCcccc-----eEE
Confidence 35788999998899999999854 467999998 999999999 8999999999999999763 233
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecC-cccc---CCccccccEEEeCHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN---PNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~---~~~~Ev~~~~Wv~~eel~~~ 175 (225)
++.+...... . ..+....+|.+... .... .+++|+.+++|++++++.++
T Consensus 65 ~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 65 LTVTNDVFEE-E--GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEEEeEEeCC-C--CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 4433222111 1 11344445555532 2222 25678899999999999886
No 36
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=3.1e-17 Score=125.61 Aligned_cols=112 Identities=20% Similarity=0.160 Sum_probs=79.6
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
++.++++++ +++||+||+.. .++|.|.+| ||++++||+ +++||.||++||||+++... .+++
T Consensus 2 ~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~P-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~-----~~~~ 63 (122)
T cd04673 2 AVGAVVFRG-GRVLLVRRANP--PDAGLWSFP-GGKVELGET---------LEQAALRELLEETGLEAEVG-----RLLT 63 (122)
T ss_pred cEEEEEEEC-CEEEEEEEcCC--CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHhhCcEeeec-----eeEE
Confidence 456777775 89999998743 368999998 999999999 89999999999999997632 3344
Q ss_pred EEEEEcCCCCC-CcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHH
Q 027303 126 RILYKAPSDGK-WGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELL 176 (225)
Q Consensus 126 ~~~y~~~~~~~-~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~ 176 (225)
.+.+......+ ...+.++++|.+... ... .+++|+.+++|++++++.++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~ 115 (122)
T cd04673 64 VVDVIERDAAGRVEFHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAALS 115 (122)
T ss_pred EEEEeeccCCCccceEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhCc
Confidence 44443322111 122445555665543 233 345788999999999998863
No 37
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.2e-17 Score=126.29 Aligned_cols=105 Identities=21% Similarity=0.210 Sum_probs=78.0
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCC-CCCCCceeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE-DVPVDEFTPL 124 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~-~i~~~~l~~l 124 (225)
+++++++|.+|++||+||+.. +.|.+| ||++++||+ +++||+||++||||+.+. .. ..+
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~~-----~~~ 61 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLP-GGGLERGET---------FAEAARRELLEELGIRLAVVA-----ELL 61 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHHCCcccccc-----ceE
Confidence 577888998899999988632 389999 999999999 899999999999999986 32 345
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEecCc-cccCCccccccEEEeCHHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
+.+.+.... .....++|.+.... ....+++|+.+++|++++++.+.
T Consensus 62 ~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 62 GVYYHSASG-----SWDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEP 108 (120)
T ss_pred EEEecCCCC-----CceEEEEEEecccCCCccCCcccEEEEEEECHHHCccc
Confidence 554443211 13344566665432 22456688999999999999764
No 38
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3e-17 Score=127.66 Aligned_cols=114 Identities=30% Similarity=0.407 Sum_probs=80.1
Q ss_pred cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303 42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 121 (225)
Q Consensus 42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l 121 (225)
..+.++++++++.++++||++|+.. |.|++| ||++++||+ +.+||+||++||||+.+...
T Consensus 5 ~~~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~P-gG~v~~gEt---------~~~aa~REl~EE~Gi~~~~~----- 64 (132)
T cd04677 5 LILVGAGVILLNEQGEVLLQKRSDT-----GDWGLP-GGAMELGES---------LEETARRELKEETGLEVEEL----- 64 (132)
T ss_pred ccccceEEEEEeCCCCEEEEEecCC-----CcEECC-eeecCCCCC---------HHHHHHHHHHHHhCCeeeee-----
Confidence 4667888889998899999998743 789998 999999999 89999999999999998643
Q ss_pred eeeeEE----EEEcCCCCCCcceEEEEE-EEEec-CccccCCccccccEEEeCHHHHHHHHH
Q 027303 122 TPLGRI----LYKAPSDGKWGEHELDYL-LFIVR-DVSVNPNPDEVAEYKYVNREQLKELLR 177 (225)
Q Consensus 122 ~~l~~~----~y~~~~~~~~~e~~~~~v-~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~ 177 (225)
..++.+ .|..+..+. .+..+.+ +++.. ...+..+.+|+.+++|++++++.+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~ 124 (132)
T cd04677 65 ELLGVYSGKEFYVKPNGDD--EQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELIN 124 (132)
T ss_pred EEEEEecCCceeecCCCCc--EEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchh
Confidence 223222 122122211 1233333 33332 233345678899999999999987653
No 39
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=1.1e-16 Score=124.20 Aligned_cols=109 Identities=23% Similarity=0.283 Sum_probs=75.2
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
+.+++++++|.++++||.||... ++|.|.+| ||+++.||+ +.+||+||++||||+.+... ..
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt---------~~~aa~RE~~EE~Gl~~~~~-----~~ 63 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNK---TPNGWKLP-GGLVDPGED---------IFDGAVREVLEETGIDTEFV-----SV 63 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCC---CCCcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCCccee-----EE
Confidence 35678888998899999887543 68999999 999999999 89999999999999987521 22
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEec---CccccCCccccccEEEeCHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~---~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
++.. +..+.. +. ....+|.+.. ...+.++++|+.+++|++++++.+.
T Consensus 64 ~~~~-~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 113 (127)
T cd04670 64 VGFR-HAHPGA--FG--KSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQ 113 (127)
T ss_pred EEEE-ecCCCC--cC--ceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcc
Confidence 2222 111111 11 1112222222 2334556788999999999999654
No 40
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.73 E-value=4.5e-17 Score=128.04 Aligned_cols=105 Identities=18% Similarity=0.282 Sum_probs=79.1
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
+|.+++++.++++||+||+.. .+|.|++| ||+++.||+ +++||+||++||||+.+.. +.+++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~---~~~~w~lP-gG~ie~gEt---------~~~aA~REl~EEtGl~~~~-----~~~l~ 63 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRF---PPGMYSLL-AGFVEPGES---------LEEAVRREVKEEVGIRVKN-----IRYVG 63 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCC---CCCcCcCC-cccccCCCC---------HHHHHhhhhhhccCceeee-----eEEEe
Confidence 567778887789999988642 37899998 999999999 8999999999999999763 33444
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHH
Q 027303 126 RILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 126 ~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
.+.+..+ +.+.++|.+... .....+++|+.+++|++++++.++
T Consensus 64 ~~~~~~~-------~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 64 SQPWPFP-------SSLMLGFTAEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred ecCCCCC-------ceEEEEEEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 4322211 233445555543 445567789999999999999998
No 41
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=7.5e-17 Score=124.45 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=79.3
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
++.+++++++|++||+||+..+..++|.|++| ||+++.||+ +.+||+||++||||+.+... ..++
T Consensus 3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~~-----~~~~ 67 (129)
T cd04699 3 AVAALIVKDVGRILILKRSKDERTAPGKWELP-GGKVEEGET---------FEEALKREVYEETGLTVTPF-----LRYP 67 (129)
T ss_pred eEEEEEECCCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCC---------HHHHHHHHHHHhhCcEEEee-----eeee
Confidence 56777778779999999987765679999998 999999999 79999999999999987632 1122
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHh
Q 027303 126 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 126 ~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
...+.... . ..+...++|.+........+++|..+++|++++++..+...
T Consensus 68 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 68 STVTHEDS--G-VYNVIYLVFVCEALSGAVKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred EEEEEcCC--C-EEEEEEEEEEeeecCCcccCChhheEEEEecHHHhhhhhcc
Confidence 22222111 1 11223344444332222334568899999999999766544
No 42
>PLN02839 nudix hydrolase
Probab=99.72 E-value=1.7e-16 Score=143.35 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=133.7
Q ss_pred ccceEEEEcCC-CCEeeeeecccccchhhcccCCcceeEEEEEEE---eCCCeEEEeeecCCCCCCCCCeeeccccCCCC
Q 027303 9 TFDRCILVDEN-DRVVGHENKYNCHLMEKIESLNLLHRAFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY 84 (225)
Q Consensus 9 ~~E~~~~~d~~-~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~---d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~ 84 (225)
++|+.++++.. +.+.....|..+-. .|....+|++--+ +.+++++++||+.+|..+||+||..+||++..
T Consensus 173 RnE~y~V~~~~~~~~l~~iERaA~~l------fGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~a 246 (372)
T PLN02839 173 RNELYPVKPSFNAPVFFSLERAAAPY------FGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPH 246 (372)
T ss_pred ccCccccccCCCCcceEEEeeccccc------cCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccC
Confidence 78999999864 57889999986543 5666677766544 23357999999999999999999999999999
Q ss_pred CCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccc
Q 027303 85 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVA 162 (225)
Q Consensus 85 gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~ 162 (225)
||+ +.++++||..||.||..... ..+...|++.|......+.. .+..|+|-... +..+.++++|++
T Consensus 247 Ges---------p~etliREa~EEAgLp~~l~--~~~~~~G~VsY~~~~~~g~~-~evly~YDLeLP~df~P~~qDGEVe 314 (372)
T PLN02839 247 GIS---------CGENLVKECEEEAGISKAIA--DRAIAVGAVSYMDIDQYCFK-RDVLFCYDLELPQDFVPKNQDGEVE 314 (372)
T ss_pred CCC---------HHHHHHHHHHHHcCCCHHHH--hcceEeEEEEEEEEcCCccc-cCEEEEeeeecCCccccCCCcccee
Confidence 999 89999999999999986532 25677888888754333322 34445554443 344577899999
Q ss_pred cEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHH
Q 027303 163 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKW 203 (225)
Q Consensus 163 ~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 203 (225)
++.+++++|+.+.+..+ ..|+|....++-+||.+.
T Consensus 315 ~F~Lm~v~EV~~~l~~~------~~fKpn~aLViiDFLiRh 349 (372)
T PLN02839 315 SFKLIPVAQVANVIRKT------SFFKANCSLVIIDFLFRH 349 (372)
T ss_pred EEEEecHHHHHHHHHcC------CCCCcccHHHHHHHHHHc
Confidence 99999999999999874 359999999999998654
No 43
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.71 E-value=3.4e-16 Score=126.91 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=81.3
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
+|.++++++++.+|++||+||+. .|+.|++| ||++++||+ +.+||.||++||||+.+..+ .
T Consensus 7 ~~~~v~~~i~~~~g~vLL~~r~~----~~~~w~~P-~G~~~~gE~---------~~~aa~REl~EEtG~~~~~~-----~ 67 (156)
T PRK00714 7 YRPNVGIILLNRQGQVFWGRRIG----QGHSWQFP-QGGIDPGET---------PEQAMYRELYEEVGLRPEDV-----E 67 (156)
T ss_pred CCCeEEEEEEecCCEEEEEEEcC----CCCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCccce-----E
Confidence 67799999999999999999973 26899999 999999999 89999999999999997532 2
Q ss_pred eeeE----EEEEcCC------CCCCcceEEEEEEEEec---CccccC---CccccccEEEeCHHHHHHHHHh
Q 027303 123 PLGR----ILYKAPS------DGKWGEHELDYLLFIVR---DVSVNP---NPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 123 ~l~~----~~y~~~~------~~~~~e~~~~~v~~~~~---~~~~~~---~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
.++. +.|..+. ...+. ....++|.+.. ...+.+ +++|+.+++|++++++.+++..
T Consensus 68 ~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~ 138 (156)
T PRK00714 68 ILAETRDWLRYDLPKRLVRRSKGVYR-GQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVP 138 (156)
T ss_pred EEEEcCCeEEecCcHHHhhccCCccc-CcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchh
Confidence 2332 3333321 11111 11234454443 122332 3468999999999999987543
No 44
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.4e-16 Score=122.37 Aligned_cols=109 Identities=19% Similarity=0.217 Sum_probs=75.2
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.++++++++.+|++||+||+.. |.|++| ||+++.||+ +.+||+||++||||+++... ..+
T Consensus 3 ~~v~~ii~~~~~~vLl~~r~~~-----~~w~lP-gG~v~~~E~---------~~~aa~REl~EE~Gl~~~~~-----~~~ 62 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSDN-----GLWALP-GGAVEPGES---------PADTAVREVREETGLDVEVT-----GLV 62 (129)
T ss_pred ceEEEEEECCCCeEEEEEecCC-----CcEECC-eeccCCCCC---------HHHHHHHHHHHHhCceeEee-----EEE
Confidence 4677788888899999999743 899998 999999999 79999999999999987522 121
Q ss_pred eEE-----EEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303 125 GRI-----LYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 125 ~~~-----~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
+.+ .+..+. +. ..+.+.++|.+.. ......+.+|..+++|++++++.++
T Consensus 63 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 63 GIYTGPVHVVTYPN-GD-VRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred EEeecccceeecCC-CC-cEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccc
Confidence 111 111111 11 1134444555443 2333345678899999999999876
No 45
>PLN02325 nudix hydrolase
Probab=99.70 E-value=2.8e-16 Score=125.82 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=78.1
Q ss_pred cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303 42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 121 (225)
Q Consensus 42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l 121 (225)
..+.++.+++++. |++||+||+... ..|.|.+| ||+++.||+ +.+||+||++||||+++...
T Consensus 7 ~p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs---------~~~aa~REv~EEtGl~v~~~----- 68 (144)
T PLN02325 7 IPRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALP-GGHLEFGES---------FEECAAREVKEETGLEIEKI----- 68 (144)
T ss_pred CCeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCCCCcce-----
Confidence 3456777777774 799999997532 34899999 999999999 89999999999999998632
Q ss_pred eeeeEEEEEcCCCCCCcceEEEEEEEEec-Cc---cccCCccccccEEEeCHHHHHHH
Q 027303 122 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DV---SVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~---~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
..++.+.+........ .|.+..+|.+.. +. ....+++|+.+++|+++++|.+.
T Consensus 69 ~~l~~~~~~~~~~~~~-~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 69 ELLTVTNNVFLEEPKP-SHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred EEEEEecceeecCCCC-cEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence 2343332221111111 244445555543 22 22345567789999999999864
No 46
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=3.2e-16 Score=121.46 Aligned_cols=109 Identities=23% Similarity=0.328 Sum_probs=76.1
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
|++.++++.+ +++||+||+. .+.|.+| ||+++.||+ +.+||.||++||||+++... .+
T Consensus 2 ~~v~~vi~~~--~~vLl~~~~~-----~~~w~lP-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~ 59 (126)
T cd04688 2 VRAAAIIIHN--GKLLVQKNPD-----ETFYRPP-GGGIEFGES---------SEEALIREFKEELGLKIEIT-----RL 59 (126)
T ss_pred eEEEEEEEEC--CEEEEEEeCC-----CCeEECC-CccccCCCC---------HHHHHHHHHHHHhCCceecc-----ee
Confidence 5666666644 5999998864 4789999 999999999 89999999999999987632 23
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecCc-ccc-------CCccccccEEEeCHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRDV-SVN-------PNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~-------~~~~Ev~~~~Wv~~eel~~~ 175 (225)
++.+.+.....+. ..+..+++|.+.... ... .+++|+.+++|++++++..+
T Consensus 60 ~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 60 LGVVENIFTYNGK-PGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred eEEEEEeeccCCc-ccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence 4433222222221 225566777666532 222 14578999999999999854
No 47
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.69 E-value=5.1e-16 Score=120.18 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=76.0
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
|..|++++++ +|++||++|.. .+.|.+| ||++++||+ +.+||+||++||||+++.. ..+
T Consensus 1 ~~~~~~vi~~-~~~vLlv~~~~-----~~~~~lP-GG~ve~gEt---------~~~aa~REl~EEtGl~~~~-----~~~ 59 (125)
T cd04689 1 HLRARAIVRA-GNKVLLARVIG-----QPHYFLP-GGHVEPGET---------AENALRRELQEELGVAVSD-----GRF 59 (125)
T ss_pred CeEEEEEEEe-CCEEEEEEecC-----CCCEECC-CCcCCCCCC---------HHHHHHHHHHHHhCceeec-----cEE
Confidence 4566777775 58999998853 2689999 999999999 7999999999999999763 344
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecCc----cccCCccccccEEEeCHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRDV----SVNPNPDEVAEYKYVNREQLK 173 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~----~~~~~~~Ev~~~~Wv~~eel~ 173 (225)
++.+.+.....+.+ .+.+.++|.+.... .....++|+.+++|++++++.
T Consensus 60 l~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 60 LGAIENQWHEKGVR-THEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred EEEEeeeeccCCce-EEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc
Confidence 55544333322222 25566667665421 122345678999999999964
No 48
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=3.7e-16 Score=119.38 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=78.1
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
.+++++++.+|++||.||.. .+.|.+| ||++++||+ +++||+||++||||+.+.. ..+.+++
T Consensus 2 ~~~~~v~~~~~~vLl~~r~~-----~~~w~~P-gG~ve~~Es---------~~~aa~REl~EEtGl~~~~---~~~~~~~ 63 (118)
T cd04690 2 IAAALILVRDGRVLLVRKRG-----TDVFYLP-GGKIEAGET---------PLQALIRELSEELGLDLDP---DSLEYLG 63 (118)
T ss_pred eEEEEEEecCCeEEEEEECC-----CCcEECC-CCccCCCCC---------HHHHHHHHHHHHHCCccCh---hheEEEE
Confidence 35666777789999988763 3789999 999999999 8999999999999998762 1255666
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303 126 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 126 ~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
.+.+....... .+...++|.+.....+. ..+|+.+++|++++++.+.
T Consensus 64 ~~~~~~~~~~~--~~~~~~~f~~~~~~~~~-~~~e~~~~~W~~~~e~~~~ 110 (118)
T cd04690 64 TFRAPAANEPG--VDVRATVYVAELTGEPV-PAAEIEEIRWVDYDDPADD 110 (118)
T ss_pred EEecccccCCC--cEEEEEEEEEcccCCcC-CCchhhccEEecHHHcccc
Confidence 66443222111 24455667666544333 3478999999999998543
No 49
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.69 E-value=5.6e-16 Score=119.37 Aligned_cols=120 Identities=17% Similarity=0.250 Sum_probs=81.5
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
.+.+++.+++|++||+||+.. ..++|.|++| ||++++||+ +.+||.||++||||+.+.. ...++
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~-~~~~g~w~~P-gG~~~~gE~---------~~~a~~Re~~EE~gl~~~~-----~~~~~ 69 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAAD-AHMAGKWEFP-GGKIEAGET---------PEQALIRELQEEVGITVQH-----ATLFE 69 (129)
T ss_pred EEEEEEECCCCEEEEEEecCC-CCCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCceec-----ceEEE
Confidence 445556777789999999865 3589999999 999999999 7999999999999998652 22344
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303 126 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 199 (225)
Q Consensus 126 ~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (225)
.+.+..+. .+...++|.+.. +.. +.+.|..+++|++++++.+. .|++..+.+++.+
T Consensus 70 ~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~~l~~~-----------~~p~~~~~~~~~~ 126 (129)
T PRK10776 70 KLEYEFPD-----RHITLWFWLVESWEGE--PWGKEGQPGRWVSQVALNAD-----------EFPPANEPIIAKL 126 (129)
T ss_pred EEEeeCCC-----cEEEEEEEEEEEECCc--cCCccCCccEEecHHHCccC-----------CCCcccHHHHHHH
Confidence 44443321 011223344432 222 23457788999999999764 3666666666654
No 50
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.69 E-value=6.6e-16 Score=117.48 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=77.9
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
++.++++++++++||++|+..+ .++|+|++| ||+++.+|+ +.+||.||++||||+.+.. ...++
T Consensus 3 ~~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p-~G~~~~~e~---------~~~~a~Re~~EE~g~~~~~-----~~~~~ 66 (124)
T cd03425 3 VVAAIIIDDDGRILIAQRPAGK-HLGGLWEFP-GGKVEPGET---------PEQALVRELREELGIEVEV-----GELLA 66 (124)
T ss_pred EEEEEEECCCCEEEEEEeCCCC-CCCCeEeCC-CcccCCCCC---------HHHHHHHHHHHhhCcEEec-----cceEE
Confidence 4556667777999999998665 689999998 999999999 7999999999999998753 23455
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303 126 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 126 ~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
.+.+..+. .+...++|.+..... ...+.|..++.|++++++.++
T Consensus 67 ~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~ 110 (124)
T cd03425 67 TVEHDYPD-----KRVTLHVFLVELWSG-EPQLLEHQELRWVPPEELDDL 110 (124)
T ss_pred EEEeeCCC-----CeEEEEEEEEeeeCC-CcccccCceEEEeeHHHcccC
Confidence 55544331 133345555543211 122457789999999999764
No 51
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.68 E-value=1.4e-15 Score=119.01 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=80.8
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
++++++ +.+|++||+||+... .++|.|++| ||+++.||+ +.+||+||++||||+.+... .+++
T Consensus 6 ~~~~ii-~~~~~vLL~~R~~~~-~~~g~w~~P-gG~ve~gE~---------~~~a~~RE~~EE~Gl~~~~~-----~~~~ 68 (135)
T PRK10546 6 VVAAII-ERDGKILLAQRPAHS-DQAGLWEFA-GGKVEPGES---------QPQALIRELREELGIEATVG-----EYVA 68 (135)
T ss_pred EEEEEE-ecCCEEEEEEccCCC-CCCCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCccccc-----eeEE
Confidence 334444 456899999997544 579999999 999999999 78999999999999997632 2344
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303 126 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 201 (225)
Q Consensus 126 ~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 201 (225)
.+.+.... .....++|.+.. .+. +...|..+++|++++++.++ .+++..+.+++.|+.
T Consensus 69 ~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~~ 127 (135)
T PRK10546 69 SHQREVSG-----RRIHLHAWHVPDFHGE--LQAHEHQALVWCTPEEALRY-----------PLAPADIPLLEAFMA 127 (135)
T ss_pred EEEEecCC-----cEEEEEEEEEEEecCc--ccccccceeEEcCHHHcccC-----------CCCcCcHHHHHHHHH
Confidence 44333211 011233443332 222 22346788999999999875 456666667776643
No 52
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=9.5e-16 Score=119.26 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=74.6
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.++++++++ ++++|++||... .++.|.+| ||+++.||+ +++||+||+.||||+.+... ++..+
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~~---~~~~~~lP-GG~ve~gEt---------~~~aa~RE~~EEtGl~v~~~---~~~~~ 64 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHDD---GGVWYILP-GGGQEPGET---------LEDAAHRECKEEIGIDVEIG---PLLFV 64 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEcC---CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCccccC---cEEEE
Confidence 356666666 589999988643 24789998 999999999 89999999999999998732 23333
Q ss_pred eEEEEEcCC-CCCCcceEEEEEEEEecCc-c---cc-CCccccccEEEeCHHHHHHH
Q 027303 125 GRILYKAPS-DGKWGEHELDYLLFIVRDV-S---VN-PNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 125 ~~~~y~~~~-~~~~~e~~~~~v~~~~~~~-~---~~-~~~~Ev~~~~Wv~~eel~~~ 175 (225)
..+.+.... ......|.++++|.+.... . .. ..+.+..+++|++++++.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 65 REYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred EEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 222211100 0111225566777666432 1 11 12234568999999999776
No 53
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=1.4e-15 Score=119.19 Aligned_cols=107 Identities=20% Similarity=0.194 Sum_probs=72.3
Q ss_pred EeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEc
Q 027303 52 FNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA 131 (225)
Q Consensus 52 ~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~ 131 (225)
.++++++||.+|+.. ++|.|.+| ||+++.||| +.+||+||++||||+++..+.. ..++..+ |..
T Consensus 10 ~~~~~~vLl~~r~~~---~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~~~--~~~~~~~-~~~ 73 (131)
T cd04695 10 LDKETKVLLLKRVKT---LGGFWCHV-AGGVEAGET---------AWQAALRELKEETGISLPELYN--ADYLEQF-YEA 73 (131)
T ss_pred cCCCCEEEEEEecCC---CCCcEECC-cccccCCCC---------HHHHHHHHHHHHhCCCcccccc--ccceeeE-eec
Confidence 356679999999854 68999998 999999999 7999999999999999864321 1112222 322
Q ss_pred CCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHh
Q 027303 132 PSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 132 ~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
+ .. .....++|.+.. .......++|+.+++|++++++.++...
T Consensus 74 ~--~~--~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 117 (131)
T cd04695 74 N--DN--RILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPF 117 (131)
T ss_pred C--Cc--eEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCC
Confidence 1 11 122334454443 2222223478999999999999988543
No 54
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.67 E-value=1.3e-15 Score=118.36 Aligned_cols=111 Identities=23% Similarity=0.201 Sum_probs=75.1
Q ss_pred eEEEEEEEeCCC---eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303 45 RAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 121 (225)
Q Consensus 45 ~~v~v~i~d~~g---~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l 121 (225)
+++++++++.++ ++||.||+. +.|++| ||++++||| +.+||+||++||||+.+....
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~---- 62 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGED---------DLEAALRETEEETGITAEQLF---- 62 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCC---------HHHHHHHHHHHHHCCChhhhh----
Confidence 456667666443 689988874 889999 999999999 899999999999999987432
Q ss_pred eeeeEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCccccccEEEeCHHHHHHHHHh
Q 027303 122 TPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
.++.+.+....... ..+..+++|.+... ..+.++ +|+.++.|++++++.+++..
T Consensus 63 -~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~~~ 118 (130)
T cd03428 63 -IVLGFKETLNYQVR-GKLKTVTYFLAELRPDVEVKLS-EEHQDYRWLPYEEALKLLTY 118 (130)
T ss_pred -hhccceeEEEcccc-CcceEEEEEEEEeCCCCccccc-cceeeEEeecHHHHHHHcCc
Confidence 22112111111100 11344455655542 334444 78999999999999987543
No 55
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.67 E-value=1.8e-15 Score=121.36 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=73.4
Q ss_pred EEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 46 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 46 ~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
++++++++.+ +++||+||.. ++.|++| ||+++.||| +.+||+||++||||+.+... ...
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lP-GG~ve~gEs---------~~~AA~REl~EETGl~v~~~-----~~~ 62 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFP-KGKINKDED---------DHDCAIREVYEETGFDISKY-----IDK 62 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECC-CccCCCCcC---------HHHHHHHHHHHhhCccceec-----ccc
Confidence 5677788765 6999988752 3589999 999999999 79999999999999997632 111
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEec-Cc--cccC-CccccccEEEeCHHHHHHHHHhc
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVR-DV--SVNP-NPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~--~~~~-~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
. .|..... ... .+++|++.. .. ...+ +++|+.+++|++++++.++....
T Consensus 63 ~--~~~~~~~---~~~-~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 115 (145)
T cd03672 63 D--DYIELII---RGQ-NVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK 115 (145)
T ss_pred c--eeeeccc---CCc-EEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc
Confidence 1 1221111 112 223344332 22 2222 35789999999999999998763
No 56
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.3e-15 Score=118.63 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=75.1
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
++++++++.+|++||++|... .+++.|.+| ||+++.||+ +.+||+||++||||+++... ..++
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~-----~~~~ 64 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKR--SCRGKWYLP-AGRMEPGET---------IEEAVKREVKEETGLDCEPT-----TLLS 64 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCC--CCCCeEECc-eeecCCCCC---------HHHHHHHHHHHHHCCeeecc-----eEEE
Confidence 567888888899999998743 358999999 999999999 89999999999999998632 2232
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEec-Ccccc---CCccccccEEEeCHHHHHHH
Q 027303 126 RILYKAPSDGKWGEHELDYLLFIVR-DVSVN---PNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 126 ~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~---~~~~Ev~~~~Wv~~eel~~~ 175 (225)
.. .. . .+.+.++|.+.. .+.+. .++.|+.+++|++++++...
T Consensus 65 ~~--~~--~----~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~ 110 (123)
T cd04671 65 VE--EQ--G----GSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLP 110 (123)
T ss_pred EE--cc--C----CeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCc
Confidence 21 11 1 134455565553 22222 23457789999999999443
No 57
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.66 E-value=3.5e-15 Score=116.29 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=76.6
Q ss_pred EEEEEEEeCC---CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 46 AFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 46 ~v~v~i~d~~---g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
++++++++.+ +++||.+|... +.|.+| ||+++.||+ +.+||+||++||||++.... +.
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~P-gG~ve~~E~---------~~~aa~RE~~EEtG~~~~~~----~~ 62 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRT-----GRWIVP-KGGPEKDES---------PAEAAAREAWEEAGVRGKIG----KR 62 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCC-----CeEECC-CCCcCCCCC---------HHHHHHHHHHHHhCCccccc----ce
Confidence 3455555533 57998887632 889999 999999999 89999999999999986522 24
Q ss_pred eeeEEEEEcCCCCCCcceEEEEEEEEecCcc-ccCCccccccEEEeCHHHHHHHHHh
Q 027303 123 PLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~-~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
+++.+.+..+..+. ..+..+++|.+..... ...+..+..+++|++++++.+++..
T Consensus 63 ~l~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 63 PLGRFEYRKRSKNR-PPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred EEEEEEeeecCCCC-CceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCC
Confidence 67777665543211 1133344554443222 2223456789999999999988654
No 58
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=2.2e-15 Score=114.70 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=68.4
Q ss_pred CCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCC
Q 027303 54 SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133 (225)
Q Consensus 54 ~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~ 133 (225)
.++++||++|.. |.|.+| ||++++||+ +.+||.||++||||+.+.. +.+++.+ ..
T Consensus 9 ~~~~vLlv~r~~------~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----~~~~~~~--~~-- 63 (112)
T cd04667 9 RGGRVLLVRKSG------SRWALP-GGKIEPGET---------PLQAARRELQEETGLQGLD-----LLYLFHV--DG-- 63 (112)
T ss_pred cCCEEEEEEcCC------CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHhCCcccc-----eEEEEEE--eC--
Confidence 458999999862 889999 999999999 8999999999999998652 3444433 21
Q ss_pred CCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHH
Q 027303 134 DGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELL 176 (225)
Q Consensus 134 ~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~ 176 (225)
. +...++|.+... .....+++|+.+++|++++++.++.
T Consensus 64 ~-----~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~ 102 (112)
T cd04667 64 G-----STRHHVFVASVPPSAQPKPSNEIADCRWLSLDALGDLN 102 (112)
T ss_pred C-----CEEEEEEEEEcCCcCCCCCchheeEEEEecHHHhhhcc
Confidence 1 234455655543 2223346789999999999998864
No 59
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=2e-15 Score=116.82 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=74.8
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
..|.++|+++ +++||.+|.. .|.|.+| ||++++||+ +.+||+||++||||+.+.. .+ .+
T Consensus 3 ~~v~~~i~~~-~~vLL~~~~~-----~~~w~~P-GG~ve~gEs---------~~~aa~REl~EEtG~~~~~---~~--~~ 61 (123)
T cd04672 3 VDVRAAIFKD-GKILLVREKS-----DGLWSLP-GGWADVGLS---------PAENVVKEVKEETGLDVKV---RK--LA 61 (123)
T ss_pred ceEEEEEEEC-CEEEEEEEcC-----CCcEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCeeeE---eE--EE
Confidence 3567777876 8999988863 4899999 999999999 8999999999999998742 11 22
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLR 177 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~ 177 (225)
+.+.+..........+.+..+|.+.. ...+... +|..+++|++++++.++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~E~~~~~W~~~~el~~l~~ 114 (123)
T cd04672 62 AVDDRNKHHPPPQPYQVYKLFFLCEILGGEFKPN-IETSEVGFFALDDLPPLSE 114 (123)
T ss_pred EEeccccccCCCCceEEEEEEEEEEecCCcccCC-CceeeeEEECHHHCccccc
Confidence 22211111111111233444555554 3334444 7889999999999987653
No 60
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.64 E-value=3.5e-15 Score=112.35 Aligned_cols=109 Identities=22% Similarity=0.339 Sum_probs=79.8
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
++++++++.++++||++|+.. ++|.|.+| ||+++.+|+ +.+||+||++||+|+.+.. ....+
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p-~G~~~~~e~---------~~~~a~RE~~EE~Gl~~~~-----~~~~~ 63 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELP-GGGVEPGET---------LEEAAIREVREETGLDVDV-----LRLLG 63 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCC-cccccCCCC---------HHHHHHHHHHHhhCcccee-----eeEEE
Confidence 567788887789999999865 78999998 999999999 7999999999999998751 23344
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEecCcc-c-cCCccccccEEEeCHHHHHHH
Q 027303 126 RILYKAPSDGKWGEHELDYLLFIVRDVS-V-NPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 126 ~~~y~~~~~~~~~e~~~~~v~~~~~~~~-~-~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
.+.+..+.. ......++|.+..... . ..++.|+.+.+|++++++.++
T Consensus 64 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 64 VYEVESPDE---GEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred EEEeeccCC---CceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccc
Confidence 444444321 1244455665554322 1 245678889999999999874
No 61
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.64 E-value=2.7e-14 Score=118.79 Aligned_cols=114 Identities=20% Similarity=0.103 Sum_probs=83.5
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.+|.++.++.++++||+|+... ...++.|++| ||++++||+ +++||+||++||||+.+. .+.++
T Consensus 48 ~~v~v~~~~~~~~vlLvrq~r~-~~~~~~~elP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~-----~l~~l 111 (185)
T PRK11762 48 GAVMIVPILDDDTLLLIREYAA-GTERYELGFP-KGLIDPGET---------PLEAANRELKEEVGFGAR-----QLTFL 111 (185)
T ss_pred CEEEEEEEeCCCEEEEEEeecC-CCCCcEEEcc-ceeCCCCCC---------HHHHHHHHHHHHHCCCCc-----ceEEE
Confidence 4567776777788999877533 2457889999 999999999 899999999999999976 35667
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCccccccEEEeCHHHHHHHHHhc
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+.+.. .+ +.. ...+++|++... .....++.|..++.|+|++++.+++.++
T Consensus 112 ~~~~~-~~---~~~-~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g 163 (185)
T PRK11762 112 KELSL-AP---SYF-SSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARP 163 (185)
T ss_pred EEEec-CC---Ccc-CcEEEEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcC
Confidence 66532 22 222 334566666542 2233456777899999999999999986
No 62
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=1.9e-15 Score=117.06 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=69.3
Q ss_pred EEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeE
Q 027303 47 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 126 (225)
Q Consensus 47 v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~ 126 (225)
+++++++.+|++||+||... ..+.|.+| ||+++.||+ +.+||+||++||||+++... ..++.
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lP-GG~ve~gEs---------~~~a~~REl~EEtGl~~~~~-----~~~~~ 64 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKP---GKTYYVFP-GGGIEEGET---------PEEAAKREALEELGLDVRVE-----EIFLI 64 (121)
T ss_pred eEEEEEeCCCEEEEEEEecC---CCCcEECC-ceeccCCCC---------HHHHHHHHHHHhhCeeEeee-----eEEEE
Confidence 35566676689999998643 25889999 999999999 89999999999999998521 12333
Q ss_pred EEEEcCCCCCCcceEEEEEEEEec-CccccC---------CccccccEEEeCHHHHHHH
Q 027303 127 ILYKAPSDGKWGEHELDYLLFIVR-DVSVNP---------NPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 127 ~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~---------~~~Ev~~~~Wv~~eel~~~ 175 (225)
+.+ + +...++|.+.. .+.+.. ++++..+++|++++++.++
T Consensus 65 ~~~--~-------~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 65 VNQ--N-------GRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred Eee--C-------CcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 322 1 11234455443 222111 1334567999999999876
No 63
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=7e-15 Score=116.33 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=77.1
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
+++.++++|.+|++|+++|...+..+++.|.+| ||+++.||+ +.+||.||++||||+.+..+ ..+...
T Consensus 1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~a~~Re~~EE~G~~~~~~--~~~~~~ 68 (133)
T cd04685 1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTP-GGGVEPGES---------PEQAARRELREETGITVADL--GPPVWR 68 (133)
T ss_pred CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECC-cCCCCCCCC---------HHHHHHHHHHHHHCCccccc--cceEEE
Confidence 478899999999999998876543467899998 999999999 89999999999999998322 122222
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEecCc-c---cc---CCccccccEEEeCHHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVRDV-S---VN---PNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~---~~---~~~~Ev~~~~Wv~~eel~~~ 175 (225)
....|..... .+ +...++|.+.... . .. .+..++..++|+++++|.+.
T Consensus 69 ~~~~f~~~~~-~~--~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 69 RDAAFTFLGV-DG--RQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEEEecCc-cc--eeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 1211222211 11 2334555554321 1 11 11234568999999999875
No 64
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.63 E-value=3.4e-15 Score=130.39 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=77.7
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
..+|.+++.+ ++++||.||... .+|.|.+| ||++++||| +++||+||++||||+++.. +.+
T Consensus 132 ~paViv~V~~-~~~iLL~rr~~~---~~g~wslP-gG~vE~GEs---------~eeAa~REv~EEtGl~v~~-----~~~ 192 (256)
T PRK00241 132 APCIIVAVRR-GDEILLARHPRH---RNGVYTVL-AGFVEVGET---------LEQCVAREVMEESGIKVKN-----LRY 192 (256)
T ss_pred CCEEEEEEEe-CCEEEEEEccCC---CCCcEeCc-ccCCCCCCC---------HHHHhhhhhhhccCceeee-----eEE
Confidence 3455555554 589999988643 27899998 999999999 8999999999999999763 445
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
++...+..+ +...+.|.+.. .+.+.++++|+.+++|++++++..+
T Consensus 193 ~~s~~~~~p-------~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~del~~l 238 (256)
T PRK00241 193 VGSQPWPFP-------HSLMLGFHADYDSGEIVFDPKEIADAQWFRYDELPLL 238 (256)
T ss_pred EEeEeecCC-------CeEEEEEEEEecCCcccCCcccEEEEEEECHHHCccc
Confidence 655544332 23445565554 3456677789999999999998654
No 65
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=1.5e-14 Score=111.77 Aligned_cols=109 Identities=17% Similarity=0.071 Sum_probs=73.6
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.++.+++++++|++||+||... ..++|.|++| ||+++.||+ +.+|++||+.||||+.+... ..+
T Consensus 5 ~~~~~ii~~~~~~vLl~~R~~~-~~~~g~w~~P-gg~ve~ge~---------~~~~~~RE~~EE~g~~~~~~-----~~~ 68 (128)
T TIGR00586 5 QIAVGIIRNENGEIIITRRADG-HMFAKLLEFP-GGKEEGGET---------PEQAVVRELEEEIGIPQHFS-----EFE 68 (128)
T ss_pred EEEEEEEECCCCEEEEEEEeCC-CCCCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCcceee-----eEE
Confidence 3445555677789999999754 4688999999 999999999 79999999999999986521 223
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
+.+.+.... .+...++|.+...+.. +...+..+++|++++++.++
T Consensus 69 ~~~~h~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 69 KLEYEFYPR-----HITLWFWLLERWEGGP-PGKEGQPEEWWVLVGLLADD 113 (128)
T ss_pred EEEEEECCC-----cEEEEEEEEEEEcCCC-cCcccccccEEeCHHHCCcc
Confidence 333332211 1223345544432221 12335678899999999875
No 66
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.62 E-value=9.2e-15 Score=122.47 Aligned_cols=113 Identities=19% Similarity=0.064 Sum_probs=78.2
Q ss_pred EEEEEEE--eCCCeEEEeeecCCCCCCCCCeeeccccCCCCC-CChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 46 AFSVFLF--NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 46 ~v~v~i~--d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~g-Es~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
++.++.+ +.++.+|++||+..-..++|.|++| ||++|++ |+ +++||+||++||||+.+. .+.
T Consensus 32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~---------~~~tA~REl~EEtGl~~~-----~~~ 96 (190)
T PRK10707 32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDAS---------LIATALREAQEEVAIPPS-----AVE 96 (190)
T ss_pred eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcC-CcccCCCccc---------HHHHHHHHHHHHHCCCcc-----ceE
Confidence 4444434 3345899999987666789999999 9999986 56 799999999999999976 345
Q ss_pred eeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHH
Q 027303 123 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELL 176 (225)
Q Consensus 123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~ 176 (225)
.++.+...... .++ ....+++.........++++|+.++.|+|++++.++.
T Consensus 97 ~lg~l~~~~~~-~~~--~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 97 VIGVLPPVDSS-TGY--QVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred EEEEeeeeecc-CCc--EEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCcc
Confidence 67766422221 121 1111222222233455678899999999999998874
No 67
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.59 E-value=2.2e-14 Score=112.13 Aligned_cols=103 Identities=16% Similarity=0.075 Sum_probs=72.6
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.++++++++. +++||.+|... ..+|.|++| ||+++.||+ +++||+||++||||+++... ..+
T Consensus 14 ~~v~~ii~~~-~~vLL~kr~~~--~~~g~w~lP-gG~ve~gE~---------~~~a~~REl~EEtGl~~~~~-----~~~ 75 (130)
T cd04511 14 IIVGCVPEWE-GKVLLCRRAIE--PRHGFWTLP-AGFMENGET---------TEQGALRETWEEAGARVEID-----GLY 75 (130)
T ss_pred EEEEEEEecC-CEEEEEEecCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCEEEee-----eEE
Confidence 4556666664 89999998753 257899999 999999999 89999999999999997521 122
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLK 173 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~ 173 (225)
+. |..+. .+.+.++|.+... ..+. ...|..+++|+++++|.
T Consensus 76 ~~--~~~~~-----~~~~~~~f~~~~~~~~~~-~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 76 AV--YSVPH-----ISQVYMFYRARLLDLDFA-PGPESLEVRLFTEEEIP 117 (130)
T ss_pred EE--EecCC-----ceEEEEEEEEEEcCCccc-CCcchhceEEECHHHCC
Confidence 22 22221 1334555666543 2333 34678899999999996
No 68
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.57 E-value=2.1e-14 Score=113.08 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=71.9
Q ss_pred CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCC
Q 027303 55 KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 134 (225)
Q Consensus 55 ~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~ 134 (225)
++++||.||+.. ..|.|.|| ||++++||| +.+||+||++||||+.+... .-....++.+.|..+..
T Consensus 12 ~~~~Llvk~~~~---~~g~W~fP-gG~ve~gEt---------~~eaa~REl~EEtGl~v~~~-~i~~~~~~~~~~~~~~~ 77 (132)
T cd04661 12 DTLVLLVQQKVG---SQNHWILP-QGKREEGET---------LRQTAERTLKELCGNNLKAK-FYGNAPVGFYKYKYPKA 77 (132)
T ss_pred CcEEEEEEeecC---CCCeeECC-cccccCCCC---------HHHHHHHHHHHhhCCCceEE-EEEecCcEEEEEecCcc
Confidence 468899888643 25899999 999999999 89999999999999986521 00001233344443321
Q ss_pred CCC--cceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHh
Q 027303 135 GKW--GEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 135 ~~~--~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
... ..+...++|.+.. .+.+.+ .+|+.+++|++++++.+++..
T Consensus 78 ~~~~~~~~~~~~~f~~~~~~g~~~~-~~e~~~~~W~~~~el~~~l~~ 123 (132)
T cd04661 78 VRNEGIVGAKVFFFKARYMSGQFEL-SQNQVDFKWLAKEELQKYLNP 123 (132)
T ss_pred cccccCcccEEEEEEEEEecCcccc-CCCcceeEecCHHHHHhhcCH
Confidence 100 1123455666654 333433 378899999999999987543
No 69
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.57 E-value=4.3e-14 Score=113.52 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=78.5
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
...++.+++... |++||.||... .++|.|.+| ||+++.||+ +++||.||++|||||++..+ .
T Consensus 9 p~~~v~~~i~~~-~~iLLvrR~~~--p~~g~WalP-GG~ve~GEt---------~eeaa~REl~EETgL~~~~~-----~ 70 (145)
T COG1051 9 PLVAVGALIVRN-GRILLVRRANE--PGAGYWALP-GGFVEIGET---------LEEAARRELKEETGLRVRVL-----E 70 (145)
T ss_pred cceeeeEEEEeC-CEEEEEEecCC--CCCCcEeCC-CccCCCCCC---------HHHHHHHHHHHHhCCcccce-----e
Confidence 345667776654 69999999854 367999999 999999999 89999999999999996532 2
Q ss_pred eeeEEEEEcCCCCCCcceEEEEEEEEec-Ccccc-CCccccccEEEeCHHHHHHH
Q 027303 123 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVN-PNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~-~~~~Ev~~~~Wv~~eel~~~ 175 (225)
.+..+ ..+..+.+. |.++++|++.. .+.+. .+.++.....|++.+++..+
T Consensus 71 ~~~v~--~~~~rd~r~-~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 71 LLAVF--DDPGRDPRG-HHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPEL 122 (145)
T ss_pred EEEEe--cCCCCCCce-eEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccc
Confidence 34333 333322222 44555555443 34333 33347889999999999875
No 70
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=1.1e-13 Score=108.61 Aligned_cols=113 Identities=16% Similarity=0.074 Sum_probs=72.4
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
++.++|+++ |++||.+|.. .+.|.+| ||++++||+ +.+||+||++||||+.+... ...++
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~~----~~~l~ 61 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKR-----YGDYKFP-GGGVEKGED---------HIEGLIRELQEETGATNIRV----IEKFG 61 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcC-----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCccccc----ceEEE
Confidence 466777774 8999988753 2579998 999999999 89999999999999986321 12334
Q ss_pred EEEEEcCC--CCCCcceEEEEEEEEecC---ccccCCcccc---ccEEEeCHHHHHHHHHh
Q 027303 126 RILYKAPS--DGKWGEHELDYLLFIVRD---VSVNPNPDEV---AEYKYVNREQLKELLRK 178 (225)
Q Consensus 126 ~~~y~~~~--~~~~~e~~~~~v~~~~~~---~~~~~~~~Ev---~~~~Wv~~eel~~~~~~ 178 (225)
.+....+. ......+...++|.+... .....++.|. ..++|+|++++.+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~~~ 122 (131)
T cd04686 62 TYTERRPWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHNEK 122 (131)
T ss_pred EEEeeccccCCCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhhHH
Confidence 33211111 111111344566666542 2233333333 36899999999886543
No 71
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.56 E-value=1.3e-13 Score=124.99 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=84.5
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
+.++.+++++ +|++||++|+.. ..+|.|.+| ||++++||+ +++||+||++||||+++....+.. ..
T Consensus 203 ~vtv~avv~~-~g~VLLvrR~~~--p~~g~W~lP-GG~ve~gEt---------~~~Aa~REl~EETGl~v~~~~l~~-~~ 268 (340)
T PRK05379 203 FVTVDAVVVQ-SGHVLLVRRRAE--PGKGLWALP-GGFLEQDET---------LLDACLRELREETGLKLPEPVLRG-SI 268 (340)
T ss_pred ceEEEEEEEE-CCEEEEEEecCC--CCCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCcccccccce-ee
Confidence 3566666665 589999999753 247999999 999999999 899999999999999875322110 00
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecC-cc-c-cCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRD-VS-V-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 200 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~-~-~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l 200 (225)
.....|..+.... ..+.+.++|.+... +. . ....+|+.+++|++++++.++-. .+......+++.|+
T Consensus 269 ~~~~~f~~p~r~~-~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~---------~~~~dh~~ii~~~~ 338 (340)
T PRK05379 269 RDQQVFDHPGRSL-RGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRD---------RMFEDHFQIITHFL 338 (340)
T ss_pred eeeEEEcCCCCCC-CCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhh---------hhhhHHHHHHHHHh
Confidence 1111223332111 12445555555432 21 1 12346889999999999987511 23345556666665
Q ss_pred H
Q 027303 201 F 201 (225)
Q Consensus 201 ~ 201 (225)
+
T Consensus 339 ~ 339 (340)
T PRK05379 339 G 339 (340)
T ss_pred c
Confidence 3
No 72
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.54 E-value=5.9e-13 Score=112.54 Aligned_cols=115 Identities=18% Similarity=0.191 Sum_probs=81.3
Q ss_pred eEEEEEEEeCC-CeEEEeeecCCCC----CCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303 45 RAFSVFLFNSK-YELLLQQRSGTKV----TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 119 (225)
Q Consensus 45 ~~v~v~i~d~~-g~vLL~rRs~~k~----~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~ 119 (225)
.+|.++.++++ ++++|.+.-.... ..+-.|++| +|.+++||+ +++||+|||.||||+.+.
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~P-AG~vd~gE~---------p~~aA~REL~EETGy~a~----- 114 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVG----- 114 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEcc-ceEcCCCCC---------HHHHHHHHHHHHhCceee-----
Confidence 46777778764 6888875432211 124579999 899999999 799999999999999976
Q ss_pred ceeeeeEEEEEcCCCCCCcceEEEEEEEEecCc----c--ccCCccccccEEEeCHHHHHHHHHhc
Q 027303 120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV----S--VNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~----~--~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
.+.+++.+ |..+ +++ .+.+|+|++..+. . ...+++|..++.|+|++++.+++.++
T Consensus 115 ~~~~l~~~-~~sp---g~~-~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G 175 (202)
T PRK10729 115 RTKPVLSY-LASP---GGT-SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG 175 (202)
T ss_pred EEEEEEEE-EcCC---CcC-ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence 34556554 3332 333 4556777766311 1 23456777889999999999999886
No 73
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.52 E-value=2.3e-13 Score=113.50 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=81.7
Q ss_pred eEEEEEEEeCC-CeEEEeeecCCCC----CCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303 45 RAFSVFLFNSK-YELLLQQRSGTKV----TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 119 (225)
Q Consensus 45 ~~v~v~i~d~~-g~vLL~rRs~~k~----~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~ 119 (225)
.+|++++++.+ +++||.++.+... ..++.|++| ||+++.||+ +++||+||++||||+.+..
T Consensus 45 ~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~~---- 110 (185)
T TIGR00052 45 NAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGES---------PEDVARREAIEEAGYQVKN---- 110 (185)
T ss_pred CeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCC---------HHHHHHHHccccccceecc----
Confidence 36677777654 7888876543211 147899999 999999999 8999999999999999863
Q ss_pred ceeeeeEEEEEcCCCCCCcceEEEEEEEEecCc-----cccCCccccccEEEeCHHHHHHHHHhc
Q 027303 120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV-----SVNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~-----~~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+..++.+ |..+ +.. .+.+++|++..+. .....++|..++.|++++++.+++.++
T Consensus 111 -~~~~~~~-~~~~---g~~-~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 111 -LRKLLSF-YSSP---GGV-TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred -eEEEEEE-EcCC---CCC-cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 4556554 3322 222 5566777776421 112244666789999999999999986
No 74
>PLN02709 nudix hydrolase
Probab=99.52 E-value=1.5e-13 Score=117.37 Aligned_cols=116 Identities=20% Similarity=0.154 Sum_probs=79.3
Q ss_pred cceeEEEEEEEeC------CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCC
Q 027303 42 LLHRAFSVFLFNS------KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 115 (225)
Q Consensus 42 ~~h~~v~v~i~d~------~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~ 115 (225)
..+.+|.+.++.. +..+||.+|+.....+||+|.|| ||+++++|.+ +.+||+||++||+||....
T Consensus 31 ~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~--------~~~tAlRE~~EEiGl~~~~ 101 (222)
T PLN02709 31 AKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKD--------DIATALREAREEIGLDPSL 101 (222)
T ss_pred CCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCC--------HHHHHHHHHHHHHCCCchh
Confidence 3456666666642 23799999998766789999999 9999998653 7999999999999998764
Q ss_pred CCCCceeeeeEEEEEcCCCCCCcceEEE-EEEEEec--CccccCCccccccEEEeCHHHHHHH
Q 027303 116 VPVDEFTPLGRILYKAPSDGKWGEHELD-YLLFIVR--DVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 116 i~~~~l~~l~~~~y~~~~~~~~~e~~~~-~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
+ ..++.+....... ...++ ++.+... .....++++||+++.|+|++.+.+.
T Consensus 102 v-----~vlg~L~~~~t~s----g~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 102 V-----TIISVLEPFVNKK----GMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred e-----EEeeecCCeECCC----CCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 3 2344432211111 12232 2222322 2344578899999999999999764
No 75
>PRK08999 hypothetical protein; Provisional
Probab=99.48 E-value=6.6e-13 Score=118.29 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=74.6
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
..+.+++.+.+|++||+||.... .++|+|++| ||+++.||+ +.+||.||++||||+.+... ..+
T Consensus 6 ~~~~~vi~~~~~~vLL~kR~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~-----~~l 69 (312)
T PRK08999 6 HVAAGVIRDADGRILLARRPEGK-HQGGLWEFP-GGKVEPGET---------VEQALARELQEELGIEVTAA-----RPL 69 (312)
T ss_pred EEEEEEEECCCCeEEEEEecCCC-CCCCeEECC-ccCCCCCCC---------HHHHHHHHHHHHhCCceecc-----eeE
Confidence 34555667777899999997544 689999999 999999999 79999999999999987532 223
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
+...+..+. . ....++|.+.. ... ++..|..+++|++++++.++
T Consensus 70 ~~~~h~~~~-~----~~~i~~y~~~~~~~~--~~~~e~~~~~Wv~~~el~~~ 114 (312)
T PRK08999 70 ITVRHDYPD-K----RVRLDVRRVTAWQGE--PHGREGQPLAWVAPDELAVY 114 (312)
T ss_pred EEEEEEcCC-C----eEEEEEEEEEEecCc--ccCccCCccEEecHHHcccC
Confidence 443333221 1 22234454432 222 33456788999999998764
No 76
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.43 E-value=5.9e-12 Score=105.58 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=80.2
Q ss_pred eEEEEEEEeC-CCeEEEeeecCCCC-----CCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303 45 RAFSVFLFNS-KYELLLQQRSGTKV-----TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 118 (225)
Q Consensus 45 ~~v~v~i~d~-~g~vLL~rRs~~k~-----~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~ 118 (225)
.+|++++++. +++++|.++-+... ..+-.|++| +|.++.+ + +++||+|||+||||+.+.
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElP-AG~vd~~-~---------p~~aA~REL~EETGy~a~---- 110 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETC-AGLLDND-E---------PEVCIRKEAIEETGYEVG---- 110 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEe-ccccCCC-C---------HHHHHHHHHHHhhCCccc----
Confidence 4677777775 56888876543221 023569999 8999865 6 699999999999999976
Q ss_pred CceeeeeEEEEEcCCCCCCcceEEEEEEEEecC-----ccccCCccccccEEEeCHHHHHHHHHhc
Q 027303 119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-----VSVNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-----~~~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
++.+++.+ |..| +.+ .+.+|+|.+... .....+++|..++.|+|++++.+++.++
T Consensus 111 -~~~~l~~~-~~sp---G~s-~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 111 -EVRKLFEL-YMSP---GGV-TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred -eEEEeeEE-EcCC---ccc-CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 35566654 4433 333 456677777642 1122356788899999999999999986
No 77
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.43 E-value=8.1e-12 Score=101.60 Aligned_cols=129 Identities=15% Similarity=0.139 Sum_probs=84.8
Q ss_pred EEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhh
Q 027303 15 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 94 (225)
Q Consensus 15 ~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~ 94 (225)
.-|.+|+.+--.-... + ......+|.++... ++++||.++.. ..|++| ||++++||+
T Consensus 3 f~d~~~~~v~l~~~~~--~------~~~~~~~V~ii~~~-~~~~LL~~~~~------~~~elP-gG~vE~gEt------- 59 (156)
T TIGR02705 3 FIDYYGNKVTLAFEKE--P------FSPNPNHVLVIPRY-KDQWLLTEHKR------RGLEFP-GGKVEPGET------- 59 (156)
T ss_pred eEcCCCCEEEEEEeCC--c------ccCCCCEEEEEEEE-CCEEEEEEEcC------CcEECC-ceecCCCCC-------
Confidence 3477888776653331 0 01112344444454 45888876642 359998 999999999
Q ss_pred hcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEE-EeCHHHHH
Q 027303 95 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYK-YVNREQLK 173 (225)
Q Consensus 95 ~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~-Wv~~eel~ 173 (225)
+++||+||++||||+.+. .+.+++.+.... +. . ....++|++... ..... +|..+.. +++++++.
T Consensus 60 --~~eaA~REl~EETG~~~~-----~~~~lg~~~~~~--~~--~-~~~~~vf~A~~~-~~~~~-~e~~E~~~~~~~~~~~ 125 (156)
T TIGR02705 60 --SKEAAIREVMEETGAIVK-----ELHYIGQYEVEG--ES--T-DFVKDVYFAEVS-ALESK-DDYLETKGPVLLQEIP 125 (156)
T ss_pred --HHHHHHHHHHHHhCcEee-----eeEEEEEEEecC--CC--c-EEEEEEEEEEEe-ccccC-CCceeeEeEEEHHHHH
Confidence 799999999999999876 456777653321 11 1 445567776654 22222 5556666 79999999
Q ss_pred HHHHhcc
Q 027303 174 ELLRKAD 180 (225)
Q Consensus 174 ~~~~~~~ 180 (225)
+++..++
T Consensus 126 ~~~~~g~ 132 (156)
T TIGR02705 126 DIIKADP 132 (156)
T ss_pred HHHhcCC
Confidence 9998863
No 78
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.36 E-value=1.2e-11 Score=97.24 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=45.5
Q ss_pred EEEEEEEe--C-CCeEEEeeecCC--CCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCC
Q 027303 46 AFSVFLFN--S-KYELLLQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 114 (225)
Q Consensus 46 ~v~v~i~d--~-~g~vLL~rRs~~--k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~ 114 (225)
++++++++ . ..++||++|... +...++.|++| ||+++.||+ +.+||+||++||||+++.
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~---------~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGED---------PLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcC---------HHHHHHHHHHHHhCCcce
Confidence 45566654 2 236888876432 22456899999 999999999 799999999999999975
No 79
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.35 E-value=2.2e-12 Score=112.96 Aligned_cols=112 Identities=17% Similarity=0.296 Sum_probs=81.9
Q ss_pred CcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303 41 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 120 (225)
Q Consensus 41 ~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~ 120 (225)
+..-+++.+.+.+. +++||.++... +||++..- +|.|++||| +++|+.||++||+|+++.+
T Consensus 141 PR~dP~vIv~v~~~-~~ilLa~~~~h---~~g~yS~L-AGFVE~GET---------lE~AV~REv~EE~Gi~V~~----- 201 (279)
T COG2816 141 PRIDPCVIVAVIRG-DEILLARHPRH---FPGMYSLL-AGFVEPGET---------LEQAVAREVFEEVGIKVKN----- 201 (279)
T ss_pred CCCCCeEEEEEecC-CceeecCCCCC---CCcceeee-eecccCCcc---------HHHHHHHHHHHhhCeEEee-----
Confidence 33456776666665 45787776643 48999986 899999999 9999999999999999874
Q ss_pred eeeeeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHh
Q 027303 121 FTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 121 l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
+.+.++..+..|.+ +.--|.+.. .++++++..|+.+.+|++.+|+..++..
T Consensus 202 vrY~~SQPWPfP~S-------LMigf~aey~sgeI~~d~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 202 VRYVGSQPWPFPHS-------LMLGFMAEYDSGEITPDEGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred eeEEeccCCCCchh-------hhhhheeeeccccccCCcchhhhccccCHhHHhhhcCC
Confidence 34555554544432 222234443 4568889899999999999997776654
No 80
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.35 E-value=1.4e-11 Score=95.79 Aligned_cols=100 Identities=18% Similarity=0.117 Sum_probs=68.9
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeee
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 125 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~ 125 (225)
+|.++++++ +++||.++. .+.|++| ||++++||+ +++||+||+.||+|+.+. .+.+++
T Consensus 2 ~v~vi~~~~-~~vLl~~~~------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EE~G~~~~-----~~~~l~ 59 (118)
T cd04665 2 SVLVICFYD-DGLLLVRHK------DRGWEFP-GGHVEPGET---------IEEAARREVWEETGAELG-----SLTLVG 59 (118)
T ss_pred EEEEEEEEC-CEEEEEEeC------CCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCccC-----ceEEEE
Confidence 355566664 788888765 2579999 999999999 799999999999999985 345676
Q ss_pred EEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHH
Q 027303 126 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQL 172 (225)
Q Consensus 126 ~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel 172 (225)
.+.+... .. ....++|.+.. .........|+....|++.+..
T Consensus 60 ~~~~~~~--~~---~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 60 YYQVDLF--ES---GFETLVYPAVSAQLEEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEecCC--CC---cEEEEEEEEEEEecccccccccccCcEEeccCCc
Confidence 6544321 11 23345555543 2222224588999999986654
No 81
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=1.4e-10 Score=90.24 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=43.0
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCC
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 114 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~ 114 (225)
++.+++..+++ +||.+|+.. ..+|.|.+| ||+++.||+ +.+||+||+.||||+.+.
T Consensus 6 ~av~vl~~~~~-~lL~~r~~~--~~~~~w~lP-gG~ve~~E~---------~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 6 VVVALLPVDDG-LLVIRRGIE--PGRGKLALP-GGFIELGET---------WQDAVARELLEETGVAVD 61 (118)
T ss_pred EEEEEEEECCC-EEEEEeecC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccc
Confidence 34444444444 555566532 357999999 999999999 899999999999999976
No 82
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.25 E-value=4.1e-12 Score=112.13 Aligned_cols=142 Identities=19% Similarity=0.264 Sum_probs=92.4
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
.-.+|...|++.+|+.+|..|. +..-||+|..+ +|.+|+||| .++||+||++||+|+++..+.
T Consensus 186 ~dPvVIm~li~~d~~~~LL~R~--~r~~~gl~t~l-AGFlEpGES---------~eeav~REtwEEtGi~V~~I~----- 248 (345)
T KOG3084|consen 186 TDPVVIMLLIDHDGKHALLGRQ--KRYPPGLWTCL-AGFLEPGES---------IEEAVRRETWEETGIEVEVIS----- 248 (345)
T ss_pred CCCeEEEEEEcCCCCEeeeecc--cCCCCchhhhh-hccCCcccc---------HHHHHHHHHHHHhCceeeeEe-----
Confidence 3467788888988865555563 44568999998 899999999 899999999999999987432
Q ss_pred eeeEEEEE-cCCCCCCcceEEEEEEEEecCccccCCcc-ccccEEEeCHHHHHHHHHhccCCC----CCcccChhHHHHH
Q 027303 123 PLGRILYK-APSDGKWGEHELDYLLFIVRDVSVNPNPD-EVAEYKYVNREQLKELLRKADAGE----EGLKLSPWFRLVV 196 (225)
Q Consensus 123 ~l~~~~y~-~~~~~~~~e~~~~~v~~~~~~~~~~~~~~-Ev~~~~Wv~~eel~~~~~~~~~~~----~~~~~~p~~~~~~ 196 (225)
+.....+. .|.. ..+-++-++..+..++.+.+ |..+.+|++.+|+.+.+...+..- .-..+.|.-..+.
T Consensus 249 ~~asQPWP~~p~S-----LMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~aL~~kg~~Rv~~~~a~i~~P~~~aIA 323 (345)
T KOG3084|consen 249 YVASQPWPLMPQS-----LMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKSALTTKGLVRVQIEKALILIPPPFAIA 323 (345)
T ss_pred eeecCCCCCCchH-----HHHHHHHHHhhCCccccCcchhhhhcccccHHHHHHHHHhcCCccccccCcceecCChhHHH
Confidence 11111111 1100 00001112223456677777 999999999999999988532100 0135666666666
Q ss_pred HHHHHHHHhh
Q 027303 197 DNFLFKWWDH 206 (225)
Q Consensus 197 ~~~l~~~~~~ 206 (225)
.+.+..|-+.
T Consensus 324 ~qLI~~~~~~ 333 (345)
T KOG3084|consen 324 HQLILHWVGF 333 (345)
T ss_pred HHHHHHHHcc
Confidence 6666666543
No 83
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.17 E-value=3e-10 Score=89.37 Aligned_cols=51 Identities=22% Similarity=0.143 Sum_probs=38.7
Q ss_pred EEEEEEeCCC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCC
Q 027303 47 FSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 113 (225)
Q Consensus 47 v~v~i~d~~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~ 113 (225)
+.+++.+.++ ++++.|.. . +.|++| ||++++||+ +.+||+||++||||+..
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~-~-----~~~~lP-gG~ve~~E~---------~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHP-L-----AGFQIV-KGTVEPGET---------PEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcC-C-----CcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCee
Confidence 3445554444 55555443 2 459998 999999999 89999999999999996
No 84
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=99.16 E-value=1.4e-10 Score=99.45 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=124.4
Q ss_pred ccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEE--EEEeCC-C--eEEEeeecCCCCCCCCCeeeccccCCC
Q 027303 9 TFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSV--FLFNSK-Y--ELLLQQRSGTKVTFPLVWTNTCCSHPL 83 (225)
Q Consensus 9 ~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v--~i~d~~-g--~vLL~rRs~~k~~~pg~W~~p~gG~ve 83 (225)
.+|...+| .+.+++=..+|..... .|....++++ .+.+++ + +++++|||.+|.+|||+|+..+||++.
T Consensus 103 rne~Y~v~-~~kkp~l~vERa~~~l------fGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~ 175 (306)
T KOG4313|consen 103 RNELYTVY-KSKKPVLAVERAATPL------FGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLS 175 (306)
T ss_pred cceeeEEE-ecCcceeEeeecccce------eeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccc
Confidence 56777888 8888888888875443 3444444444 344554 3 689999999999999999999999999
Q ss_pred CCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEec--CccccCCcccc
Q 027303 84 YRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEV 161 (225)
Q Consensus 84 ~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev 161 (225)
.|-. +.++|+.|..||.+|.... .+.+...|++.|....+..+-..+..|+|-... +.-++++++|+
T Consensus 176 ~g~g---------I~eT~iKE~~EEAnl~~~~--~~Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~nDGEV 244 (306)
T KOG4313|consen 176 VGFG---------IKETAIKEAAEEANLPSDL--VKNLVSAGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNNDGEV 244 (306)
T ss_pred cCch---------HHHHHHHHHHHhcCCchhh--HhcceecceeEEEeeehhhccCccceEEEeccCchhhcCCCCCCce
Confidence 9999 8999999999999999732 345777888777632222222245557775443 45567889999
Q ss_pred ccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303 162 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 200 (225)
Q Consensus 162 ~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l 200 (225)
+.+..+++.+..+.+... .|.|..+.++=+||
T Consensus 245 ~~F~Lltl~~~v~~l~~k-------~FKpncAlV~iDfl 276 (306)
T KOG4313|consen 245 QAFELLTLKDCVERLFTK-------DFKPNCALVVIDFL 276 (306)
T ss_pred eeEeeecHHHHHHHHHhh-------ccCCCcceEEEEEe
Confidence 999999999998888774 58888877776664
No 85
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.16 E-value=2e-10 Score=95.91 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=63.0
Q ss_pred eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc---------eeeeeEE
Q 027303 57 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE---------FTPLGRI 127 (225)
Q Consensus 57 ~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~---------l~~l~~~ 127 (225)
++|+.+|.. +|.|.+| ||+++++|+ +.+||.||+.||||+.+..+..+. +..-...
T Consensus 50 ~vLl~~r~~-----~g~walP-GG~v~~~E~---------~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~ 114 (186)
T cd03670 50 QFVAIKRPD-----SGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVE 114 (186)
T ss_pred EEEEEEeCC-----CCcCcCC-eeeccCCCC---------HHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccE
Confidence 677788853 4899999 999999999 899999999999987654332211 0000112
Q ss_pred EEEcCCC------CCCcceEEEEEEEEecC---ccccC-CccccccEEEeCHHHHHHH
Q 027303 128 LYKAPSD------GKWGEHELDYLLFIVRD---VSVNP-NPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 128 ~y~~~~~------~~~~e~~~~~v~~~~~~---~~~~~-~~~Ev~~~~Wv~~eel~~~ 175 (225)
.|..+.. ..|. +.+.+.|..... ....+ ..++..+++|++++++..+
T Consensus 115 vy~~~~~dpr~td~~w~-~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L 171 (186)
T cd03670 115 VYKGYVDDPRNTDNAWM-ETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPL 171 (186)
T ss_pred EEeccccCCCCCCcceE-EEEEEEEEecCcccccccccCCCCchheeEEEEccccccc
Confidence 2332221 1233 233344433211 11222 2467899999999998754
No 86
>PLN03143 nudix hydrolase; Provisional
Probab=99.11 E-value=9.6e-10 Score=97.65 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=72.9
Q ss_pred eEEEEEEE-eCCCe--EEEeeecCCCCCCCCCeeeccccCCCCC-CChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303 45 RAFSVFLF-NSKYE--LLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 120 (225)
Q Consensus 45 ~~v~v~i~-d~~g~--vLL~rRs~~k~~~pg~W~~p~gG~ve~g-Es~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~ 120 (225)
.+|++++. +.+++ ++|+++.+.. ...-.|++| ||.+|++ |+ +++||+||++||||+.+.. .+
T Consensus 129 ~aVaVL~~l~~~ge~~VlLVrQ~R~p-vg~~~lE~P-AG~lD~~~ed---------p~~aA~REL~EETG~~~~a---~~ 194 (291)
T PLN03143 129 PAVAVLILLESEGETYAVLTEQVRVP-VGKFVLELP-AGMLDDDKGD---------FVGTAVREVEEETGIKLKL---ED 194 (291)
T ss_pred CeEEEEEEEeCCCCEEEEEEEeEecC-CCcEEEEec-ccccCCCCCC---------HHHHHHHHHHHHHCCcccc---ce
Confidence 35565554 54555 7777665322 223489999 8999975 78 7999999999999998642 12
Q ss_pred eeeeeE--------EEEEcCCCCCCcceEEEEEEEEecCcc------------ccCCccccccEEEeCHHHHHHHHHh
Q 027303 121 FTPLGR--------ILYKAPSDGKWGEHELDYLLFIVRDVS------------VNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 121 l~~l~~--------~~y~~~~~~~~~e~~~~~v~~~~~~~~------------~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
+..+.. -.|..+ +.+ .+.+++|.+..... ...+++|...+.|++++++.+++..
T Consensus 195 lv~L~~~~~~~~g~~v~psp---G~~-dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD 268 (291)
T PLN03143 195 MVDLTAFLDPSTGCRMFPSP---GGC-DEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTAD 268 (291)
T ss_pred EEEeeeccccCcCceEEecC---Ccc-CCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHh
Confidence 333321 123322 223 33445665443210 1235578889999999999998754
No 87
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.11 E-value=7.3e-10 Score=84.73 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=67.2
Q ss_pred EEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHH-HHHHHHHhHhCCCCCCCCCCceee
Q 027303 46 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRN-AAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 46 ~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~e-aa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
++.+.+.... +++|+++|.... +.|.+| ||+++.||+ +.+ ||+||++||||+.+... .+..
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~----~~~~~P-gG~ve~~e~---------~~~~aa~RE~~EEtGl~~~~~---~~~~ 75 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDG----GLWELP-GGKVEPGEE---------LPEEAAARELEEETGLRVKDE---RLEL 75 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccC----CceecC-CcccCCCCc---------hHHHHHHHHHHHHhCCeeeee---ccee
Confidence 3344444333 789998887543 799999 999999999 466 99999999999998731 1223
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEec----CccccCC---ccccccEEEeCHHHHHHHHHh
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVR----DVSVNPN---PDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~----~~~~~~~---~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
++.+..................+.... ....... ..|...+.|++++++......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 137 (161)
T COG0494 76 LGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLA 137 (161)
T ss_pred eeeccCcccCcccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHccccccc
Confidence 333322211111000011111111211 1111111 357899999999998876443
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.10 E-value=3.9e-10 Score=96.09 Aligned_cols=112 Identities=21% Similarity=0.121 Sum_probs=77.1
Q ss_pred eEEEEEEEeC-CC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303 45 RAFSVFLFNS-KY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 121 (225)
Q Consensus 45 ~~v~v~i~d~-~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l 121 (225)
.+|.+.+++. +| ++||+||+.+-..++|.-.|| ||..++.+.+ ...+|.||.+||+|+....+.
T Consensus 44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s--------~~~tAlREt~EEIGl~~~~~~---- 110 (246)
T KOG3069|consen 44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKS--------DIQTALRETEEEIGLDPELVD---- 110 (246)
T ss_pred ccEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccc--------hHHHHHHHHHHHhCCCHHHhh----
Confidence 4556666664 33 799999999999999999999 9999998775 689999999999999986432
Q ss_pred eeeeEEEE-EcCCCCCCcceEEEE-EEEEecC---ccccCCccccccEEEeCHHHHHHH
Q 027303 122 TPLGRILY-KAPSDGKWGEHELDY-LLFIVRD---VSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 122 ~~l~~~~y-~~~~~~~~~e~~~~~-v~~~~~~---~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
.++.+.- ... .+|. +.- +.+.... ....++++|+.++.|||++++..-
T Consensus 111 -~~g~l~~~~~r--~~~~---v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 111 -VLGALPPFVLR--SGWS---VFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred -hhhhccceeec--cCcc---cceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence 2332210 000 1121 111 1111112 345688999999999999998654
No 89
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.04 E-value=8.6e-09 Score=77.86 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=69.5
Q ss_pred EEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEE
Q 027303 48 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 127 (225)
Q Consensus 48 ~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~ 127 (225)
.++++.++|++||+||.. +..|+|+|+|| ||.++.+++ .+++..|++.++.++... .++.+
T Consensus 6 ~~~ii~~~~~~ll~kR~~-~gl~~glwefP-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--------~~~~~ 66 (118)
T cd03431 6 AVVVIRNDGRVLLEKRPE-KGLLAGLWEFP-SVEWEEEAD---------GEEALLSALKKALRLSLE--------PLGTV 66 (118)
T ss_pred EEEEEecCCeEEEEECCC-CCCCCcceeCC-CccccCCcC---------HHHHHHHHHHHHhCcccc--------cceeE
Confidence 333344468999999975 45799999999 888888888 688888999888775111 12333
Q ss_pred EEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303 128 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 198 (225)
Q Consensus 128 ~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~ 198 (225)
.+.... .+...++|.+...... .+..++.|++++++.++ .+++..+.+++.
T Consensus 67 ~H~fth-----~~~~~~~~~~~~~~~~----~~~~~~~W~~~eel~~~-----------~~p~~~~kil~~ 117 (118)
T cd03431 67 KHTFTH-----FRLTLHVYLARLEGDL----LAPDEGRWVPLEELDEY-----------ALPTVMRKILEL 117 (118)
T ss_pred EEecCC-----eEEEEEEEEEEEeCCC----cCccccEEccHHHHhhC-----------CCCHHHHHHHHh
Confidence 222210 0112244444432111 24567899999998875 356655555543
No 90
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.84 E-value=3.8e-08 Score=78.27 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=76.4
Q ss_pred ceeEEEEEEEeCCC---eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303 43 LHRAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 119 (225)
Q Consensus 43 ~h~~v~v~i~d~~g---~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~ 119 (225)
+..+++|+.+..++ ++||..-++ .|-.|-+| +|+++++|+ ..+||.||..||.|+.-....
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs~----~~~~wi~P-KGGwE~dE~---------~~eAA~REt~EEAGv~G~l~~-- 71 (145)
T KOG2839|consen 8 FRLVAGCICYRSDKEKIEVLLVSSSK----KPHRWIVP-KGGWEPDES---------VEEAALRETWEEAGVKGKLGR-- 71 (145)
T ss_pred cEEEEEeeeeeecCcceEEEEEecCC----CCCCccCC-CCCCCCCCC---------HHHHHHHHHHHHhCceeeeec--
Confidence 44556666665443 688876553 24678888 899999999 799999999999999976321
Q ss_pred ceeeeeEE-EEEcCCCCCCcceEEEEEEEEecCccc--cC-CccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHH
Q 027303 120 EFTPLGRI-LYKAPSDGKWGEHELDYLLFIVRDVSV--NP-NPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV 195 (225)
Q Consensus 120 ~l~~l~~~-~y~~~~~~~~~e~~~~~v~~~~~~~~~--~~-~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~ 195 (225)
.++.+ .+..... +.. .-.+.|.......+ -+ ...|..+.+|++++|....+.. .|.+..
T Consensus 72 ---~~~g~~~~~~~~~--~~~-~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~-----------~~m~~a 134 (145)
T KOG2839|consen 72 ---LLGGFEDFLSKKH--RTK-PKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQH-----------KWMKAA 134 (145)
T ss_pred ---cccchhhccChhh--ccc-ccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhh-----------HHHHHH
Confidence 12222 1222211 111 11123322221111 11 1245889999999999888652 455566
Q ss_pred HHHHHHH
Q 027303 196 VDNFLFK 202 (225)
Q Consensus 196 ~~~~l~~ 202 (225)
++.++..
T Consensus 135 l~e~~~~ 141 (145)
T KOG2839|consen 135 LEEFLQF 141 (145)
T ss_pred HHHHHHH
Confidence 6666544
No 91
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.51 E-value=6.2e-06 Score=68.98 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=69.9
Q ss_pred EEeCCC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEE
Q 027303 51 LFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 128 (225)
Q Consensus 51 i~d~~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~ 128 (225)
++..+| .++|++.-+ .+...-+.++| +|-++.||+ ++.||+|||+||||++-... ......
T Consensus 81 il~~dG~~~ivL~kQfR-pP~Gk~ciElP-AGLiD~ge~---------~~~aAiREl~EEtGy~gkv~------~~s~~~ 143 (225)
T KOG3041|consen 81 ILESDGKPYIVLVKQFR-PPTGKICIELP-AGLIDDGED---------FEGAAIRELEEETGYKGKVD------MVSPTV 143 (225)
T ss_pred EEecCCcEEEEEEEeec-CCCCcEEEEcc-cccccCCCc---------hHHHHHHHHHHHhCccceee------eccccE
Confidence 444556 466665432 22334578998 899999999 89999999999999994421 112233
Q ss_pred EEcCCCCCCcceEEEEEE-EEecC--cc----ccCCccccccEEEeCHHHHHHHHHhc
Q 027303 129 YKAPSDGKWGEHELDYLL-FIVRD--VS----VNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 129 y~~~~~~~~~e~~~~~v~-~~~~~--~~----~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
|..| +..+...+.+. .+..+ .+ ..+++.|..+++-+++.+|.+.+...
T Consensus 144 f~DP---Gltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l 198 (225)
T KOG3041|consen 144 FLDP---GLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADL 198 (225)
T ss_pred EcCC---CCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhh
Confidence 4544 33333333222 22222 11 23567899999999999998887764
No 92
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=1.1e-07 Score=83.98 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=78.7
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
..+++++++|.+++||+++-.......+|.|-+| +|.++++|+ +-++|+||++||||++-.-. .
T Consensus 115 ~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~p-tG~v~~~e~---------i~~gavrEvkeetgid~ef~------e 178 (295)
T KOG0648|consen 115 RVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLP-TGRVEEGED---------IWHGAVREVKEETGIDTEFV------E 178 (295)
T ss_pred heeeeeeEecCCceeEEEEecccceeeccccccc-ceEeccccc---------chhhhhhhhHHHhCcchhhh------h
Confidence 3568888999888999976544555678999999 789999999 89999999999999965421 1
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEec---CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~---~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+-.+ .......+....-..+++|.- ...++.+..|+.+++|+++++.......+
T Consensus 179 Vla~--r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~ 235 (295)
T KOG0648|consen 179 VLAF--RRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVH 235 (295)
T ss_pred HHHH--HhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccc
Confidence 1111 111111111001112233322 23456677888899999999888876654
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.32 E-value=1.8e-06 Score=65.82 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=51.9
Q ss_pred EEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEE
Q 027303 49 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 128 (225)
Q Consensus 49 v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~ 128 (225)
+++++.+|++||+||.. +..|.|+|+|| .--.+...+ .+++.+.+.+..|+.+... ..++.+.
T Consensus 2 ~~i~~~~~~~Ll~kRp~-~gll~GLwefP-~~e~~~~~~----------~~~l~~~~~~~~~~~~~~~-----~~~~~v~ 64 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPE-KGLLAGLWEFP-LIESDEEDD----------EEELEEWLEEQLGLSIRSV-----EPLGTVK 64 (114)
T ss_dssp EEEEETTSEEEEEE--S-SSTTTT-EE---EEE-SSS-C----------HHHHHHHTCCSSS-EEEE------S-SEEEE
T ss_pred EEEEEeCCEEEEEECCC-CChhhcCcccC-EeCccCCCC----------HHHHHHHHHHHcCCChhhh-----eecCcEE
Confidence 46678889999999984 56799999999 433332223 4555555667777765421 2344443
Q ss_pred EEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHH
Q 027303 129 YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 129 y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
+.... -+...++|.+........ ...+.+|++++++.++
T Consensus 65 H~fSH-----~~~~~~~~~~~~~~~~~~---~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 65 HVFSH-----RRWTIHVYEVEVSADPPA---EPEEGQWVSLEELDQY 103 (114)
T ss_dssp EE-SS-----EEEEEEEEEEEEE-SS-------TTEEEEEGGGGGGS
T ss_pred EEccc-----eEEEEEEEEEEecCCCCC---CCCCcEEEEHHHHhhC
Confidence 33210 011224444443322111 4578999999999764
No 94
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=98.03 E-value=6.8e-05 Score=61.03 Aligned_cols=132 Identities=16% Similarity=0.276 Sum_probs=79.8
Q ss_pred EEEEEeCCCeEEEeeecC--CCCCCCCCeeeccccCCCCCCChhhhhhhhc-HHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 48 SVFLFNSKYELLLQQRSG--TKVTFPLVWTNTCCSHPLYRESELIEENALG-VRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 48 ~v~i~d~~g~vLL~rRs~--~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~-~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.|+|.| .+++|+..|.. ......+.+++.+|||+..++-+. +... +.-.+.||+.||+++.-.+. ..+.++
T Consensus 65 Yvvi~~-edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~---s~~evLk~n~~REleEEv~vseqd~--q~~e~l 138 (203)
T COG4112 65 YVVIMD-EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGAT---SREEVLKGNLERELEEEVDVSEQDL--QELEFL 138 (203)
T ss_pred EEEEec-CCEEEEEEeccCcchhhhccccccccccccccCCCcc---cHHHHHccchHHHHHHHhCcCHHHh--hhheee
Confidence 444555 46999998853 223346888999999999876631 1111 23347899999999996642 345666
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD 197 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~ 197 (225)
|-+ +...+..+.-++-.+|..+.. ......+.+.-+++|+.+++|.+. +..+..|.+.+++
T Consensus 139 GlI---Ndd~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~---------y~~~EtWS~~~~~ 200 (203)
T COG4112 139 GLI---NDDTNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKF---------YGVMETWSKISAA 200 (203)
T ss_pred eee---cCCCcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHHH---------hhhhHHHHHHHHH
Confidence 654 222222222222234444432 223344566789999999999984 2356666665554
No 95
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=97.79 E-value=0.00021 Score=56.01 Aligned_cols=91 Identities=22% Similarity=0.239 Sum_probs=56.2
Q ss_pred CCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCc-----ceEEE--
Q 027303 71 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG-----EHELD-- 143 (225)
Q Consensus 71 pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~-----e~~~~-- 143 (225)
-|.|.+| -|....||+ +.-||+||.-||+||.+.. .+..++.+.. + +++.. +-++.
T Consensus 35 ~GAWSIP-KGey~~gEd---------p~~AArREf~EE~Gi~vdG----P~~~lG~~kQ--~-GGKvVta~~veae~Dva 97 (161)
T COG4119 35 DGAWSIP-KGEYTGGED---------PWLAARREFSEEIGICVDG----PRIDLGSLKQ--S-GGKVVTAFGVEAELDVA 97 (161)
T ss_pred CCccccc-ccccCCCcC---------HHHHHHHHhhhhhceeecC----chhhhhhhcc--C-CCcEEEEEeeeeeeehh
Confidence 3789999 789999999 7999999999999999862 2334444321 1 11100 00000
Q ss_pred ----EEEEEec---CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303 144 ----YLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 144 ----~v~~~~~---~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
..|...- .+..+ .-.|++...|+++.+...-+..+
T Consensus 98 ~~rSntFe~eWPprSG~M~-~FPEVDRagWF~l~eAr~Kil~g 139 (161)
T COG4119 98 DARSNTFELEWPPRSGKMR-KFPEVDRAGWFPLAEARTKILKG 139 (161)
T ss_pred hhhcceeeeecCCCCCccc-cCcccccccceecHHHHhHHhhc
Confidence 0111110 11111 12478999999999999888774
No 96
>PRK10880 adenine DNA glycosylase; Provisional
Probab=96.46 E-value=0.039 Score=50.60 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=23.9
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeec
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 77 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p 77 (225)
.+...++++..++++||.||... ..|.|+|+||
T Consensus 230 ~~~~~~~~~~~~~~~~l~~r~~~-gl~~gl~~fP 262 (350)
T PRK10880 230 ERTGYFLLLQHGDEVWLEQRPPS-GLWGGLFCFP 262 (350)
T ss_pred eEEEEEEEEEECCEEEEEECCcc-ChhhccccCC
Confidence 34444444545689999999854 5789999999
No 97
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=94.91 E-value=0.031 Score=47.88 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=64.6
Q ss_pred EEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCC---CCc-eeeeeEEEEEcCC
Q 027303 58 LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP---VDE-FTPLGRILYKAPS 133 (225)
Q Consensus 58 vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~---~~~-l~~l~~~~y~~~~ 133 (225)
++.+||+.. |.|.+| ||.+++||- +-.+.+||..||.==...... +.+ |.-.+.-.|..-.
T Consensus 141 ~vavkr~d~-----~~WAiP-GGmvdpGE~---------vs~tLkRef~eEa~ns~~k~~e~~l~~~~~~~g~evYkGYv 205 (275)
T KOG4195|consen 141 FVAVKRPDN-----GEWAIP-GGMVDPGEK---------VSATLKREFGEEAMNSLQKSNEEMLHKLLSQCGMEVYKGYV 205 (275)
T ss_pred EEEEecCCC-----CcccCC-CCcCCchhh---------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCeEEeeeec
Confidence 445577643 789999 999999999 899999999999644333221 110 1123333344322
Q ss_pred ------CCCCcceEEEEEEEEecCc----cccCC-ccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303 134 ------DGKWGEHELDYLLFIVRDV----SVNPN-PDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 199 (225)
Q Consensus 134 ------~~~~~e~~~~~v~~~~~~~----~~~~~-~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (225)
++.|++.... -+-..++ .+.+. .+....++|+..+.=..+-++ .+.+++++.+++
T Consensus 206 DDpRNTDNaWmET~av--n~hde~g~~~~nl~L~AgDda~~vrW~dVn~~l~LyAs---------hs~fi~lvae~r 271 (275)
T KOG4195|consen 206 DDPRNTDNAWMETVAV--NFHDEDGNNMDNLNLEAGDDAKKVRWVDVNSNLPLYAS---------HSQFIQLVAEKR 271 (275)
T ss_pred CCCCcccccceeEEEE--eeeccccchhccccccccCcccceeEEEecCCccchhh---------HHHHHHHHHHHh
Confidence 2345432211 1112222 12222 355778999998866555443 445555555544
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=94.20 E-value=0.33 Score=43.52 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=49.3
Q ss_pred hhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEE-EEecC----ccccCCccccccEE
Q 027303 91 EENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLL-FIVRD----VSVNPNPDEVAEYK 165 (225)
Q Consensus 91 ~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~-~~~~~----~~~~~~~~Ev~~~~ 165 (225)
.+|.|. .+-|.||..||.|.++. .+++.....+ ....+. .+..+-.|+. +...+ +....+++|..++-
T Consensus 294 d~p~s~-~e~a~~e~veecGYdlp---~~~~k~va~y--~sGVG~-SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv 366 (405)
T KOG4432|consen 294 DDPFSD-PEKAARESVEECGYDLP---EDSFKLVAKY--ISGVGQ-SGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVV 366 (405)
T ss_pred CCCccc-HHHHHHHHHHHhCCCCC---HHHHhhhhee--ecccCC-cCCeeEEEEEEeehhhccCCCCCcccccceeeEE
Confidence 334333 45677899999999976 4445444433 322111 1112222212 22221 22334567888999
Q ss_pred EeCHHHHHHHHHhccC
Q 027303 166 YVNREQLKELLRKADA 181 (225)
Q Consensus 166 Wv~~eel~~~~~~~~~ 181 (225)
-+|+++++++..+++.
T Consensus 367 ~lsle~a~~~~~q~~I 382 (405)
T KOG4432|consen 367 RLSLEDAPSLYRQHNI 382 (405)
T ss_pred EechhhhhHHHhccCC
Confidence 9999999999999865
No 99
>PF14443 DBC1: DBC1
Probab=92.98 E-value=0.84 Score=35.87 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=38.2
Q ss_pred EEEeeecCCCCCCCCCeeecc-ccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCC
Q 027303 58 LLLQQRSGTKVTFPLVWTNTC-CSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 133 (225)
Q Consensus 58 vLL~rRs~~k~~~pg~W~~p~-gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~ 133 (225)
+|+.+|.+.-..-.|.|+... ||....+-+. +..+|+|=.++-|||+.+.-. +...+..++|..+.
T Consensus 10 Flv~~k~ke~~aiGG~WspsLDG~DP~~dp~~--------LI~TAiR~~K~~tgiDLS~Ct--~W~rf~Ei~Y~R~~ 76 (126)
T PF14443_consen 10 FLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSV--------LIRTAIRTCKALTGIDLSNCT--QWYRFAEIHYYRPG 76 (126)
T ss_pred eEEeecCceEEecCCcCCcccCCCCCCCCcHH--------HHHHHHHHHHHHhccchhhcC--ccceeeEEEEecCC
Confidence 444444432223357788653 3333333333 789999999999999987422 22223345666554
No 100
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=92.83 E-value=0.29 Score=41.07 Aligned_cols=60 Identities=18% Similarity=0.113 Sum_probs=40.7
Q ss_pred cCCcceeEEEEEEEeCCC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCC
Q 027303 39 SLNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 114 (225)
Q Consensus 39 ~~~~~h~~v~v~i~d~~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~ 114 (225)
+.|+.+-+-+++++...+ .|||.|...+ .|-+| ||.+.+||+ ..++..|.|.+-+|..-.
T Consensus 39 ~~GmRrsVe~Vllvh~h~~PHvLLLq~~~~------~fkLP-Gg~l~~gE~---------e~~gLkrkL~~~l~~~~~ 100 (188)
T PF13869_consen 39 KEGMRRSVEGVLLVHEHGHPHVLLLQIGNT------FFKLP-GGRLRPGED---------EIEGLKRKLTEKLSPEDG 100 (188)
T ss_dssp HHSSEEEEEEEEEEEETTEEEEEEEEETTT------EEE-S-EEE--TT-----------HHHHHHHHHHHHHB-SSS
T ss_pred HhCCceEEEEEEEEecCCCcEEEEEeccCc------cccCC-ccEeCCCCC---------hhHHHHHHHHHHcCCCcC
Confidence 467666666777777665 5777775432 47788 999999999 699999999999998753
No 101
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=91.23 E-value=0.66 Score=41.14 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=23.8
Q ss_pred eeEEEEE-EEeCCCeEEEeeecCCCCCCCCCeeec
Q 027303 44 HRAFSVF-LFNSKYELLLQQRSGTKVTFPLVWTNT 77 (225)
Q Consensus 44 h~~v~v~-i~d~~g~vLL~rRs~~k~~~pg~W~~p 77 (225)
+....++ +.+.+|++|++||... ..+.|+|+||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~r~~~-~~~~gl~~~p 259 (275)
T TIGR01084 226 ERTTYFLVLQNYDGEVLLEQRPEK-GLWGGLYCFP 259 (275)
T ss_pred eEEEEEEEEEeCCCeEEEEeCCCC-chhhccccCC
Confidence 3443444 4556789999999754 5789999999
No 102
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=86.09 E-value=1.6 Score=39.21 Aligned_cols=85 Identities=16% Similarity=0.127 Sum_probs=50.8
Q ss_pred cccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCC
Q 027303 78 CCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPN 157 (225)
Q Consensus 78 ~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~ 157 (225)
+||.++..-| +.+-|..|+.||.|.++. +++|.++.+| ...... + ..-.++|.+..+......
T Consensus 84 c~g~idke~s---------~~eia~eev~eecgy~v~---~d~l~hv~~~--~~g~~~--s-~sa~~l~y~ei~es~kis 146 (405)
T KOG4432|consen 84 CAGLIDKELS---------PREIASEEVAEECGYRVD---PDDLIHVITF--VVGAHQ--S-GSAQHLYYAEIDESMKIS 146 (405)
T ss_pred eccccccccC---------HHHHhHHHHHHHhCCcCC---hhHceEEEEE--Eecccc--C-ccchheeeeecchhhccc
Confidence 3788888877 899999999999999987 6677776554 332211 1 112245555544333322
Q ss_pred c-----cccccEEEeCHHHHHHHHHhc
Q 027303 158 P-----DEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 158 ~-----~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+ .++--.-=+++++.+.++..+
T Consensus 147 ~gggv~~~~~~~~~~a~e~ar~~i~t~ 173 (405)
T KOG4432|consen 147 EGGGVITKVYYPVNVAREIARPAIGTH 173 (405)
T ss_pred cCCceeeEEEEeehhhHHHHHHhhccC
Confidence 1 223333345666777776654
No 103
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=85.51 E-value=4.4 Score=35.52 Aligned_cols=106 Identities=23% Similarity=0.260 Sum_probs=57.6
Q ss_pred EEEeeecCCCCCCCCCeeeccccCC-CCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCC
Q 027303 58 LLLQQRSGTKVTFPLVWTNTCCSHP-LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK 136 (225)
Q Consensus 58 vLL~rRs~~k~~~pg~W~~p~gG~v-e~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~ 136 (225)
+||++|.-++ -+.|-|| -+.. +.+++ ...+|.|.|+.-.|=.....-. +-.++++..++.|....
T Consensus 141 yLLV~~k~g~---~s~w~fP-~~~~s~~~~~---------lr~~ae~~Lk~~~ge~~~t~fv-gnaP~g~~~~q~pr~~~ 206 (263)
T KOG4548|consen 141 YLLVKRKFGK---SSVWIFP-NRQFSSSEKT---------LRGHAERDLKVLSGENKSTWFV-GNAPFGHTPLQSPREMT 206 (263)
T ss_pred EEEEeeccCc---cceeeCC-CcccCCccch---------HHHHHHHHHHHHhcchhhhhee-ccCccccccccCccccc
Confidence 5666654333 3689999 5666 77888 7999999999888866543211 11234444444432111
Q ss_pred CcceEEEEEEEEec---CccccCCccccccEEEeCHHHHHHHHHh
Q 027303 137 WGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 137 ~~e~~~~~v~~~~~---~~~~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
.-...-.++|+... .+. .....-..++.|++.++|.+.+..
T Consensus 207 ~e~~~~sk~ff~k~~lv~~~-~~kn~n~edfvWvTkdel~e~l~~ 250 (263)
T KOG4548|consen 207 TEEPVSSKVFFFKASLVANS-NQKNQNKEDFVWVTKDELGEKLPK 250 (263)
T ss_pred ccccccceeEEeeeeecccc-chhcccccceEEechHHHhhhcch
Confidence 10000012232221 111 112233456999999999887544
No 104
>PRK13910 DNA glycosylase MutY; Provisional
Probab=82.66 E-value=2 Score=38.40 Aligned_cols=29 Identities=3% Similarity=0.058 Sum_probs=21.3
Q ss_pred EEEEEEEeCCCeEEEeeecCCCCCCCCCeeec
Q 027303 46 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 77 (225)
Q Consensus 46 ~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p 77 (225)
...+++.+ +|++||+||. +..|.|+|+||
T Consensus 188 ~~~~~~~~-~~~~ll~kr~--~~l~~gl~~fP 216 (289)
T PRK13910 188 RYLGVVIQ-NNQIALEKIE--QKLYLGMHHFP 216 (289)
T ss_pred EEEEEEEE-CCEEEEEECC--CchhcccccCC
Confidence 33334444 5799999985 45899999999
No 105
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=68.79 E-value=14 Score=30.68 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=37.0
Q ss_pred CCcceeEEEEEEEeCC--CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCC
Q 027303 40 LNLLHRAFSVFLFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 111 (225)
Q Consensus 40 ~~~~h~~v~v~i~d~~--g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl 111 (225)
.|+.+.+-+++|+... -.+||.|-..+ .+-+| ||.+++||+ -.+...|-+-|-+|-
T Consensus 66 ~gmRrsvegvlivheH~lPHvLLLQig~t------f~KLP-GG~L~pGE~---------e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 66 EGMRRSVEGVLIVHEHNLPHVLLLQIGNT------FFKLP-GGRLRPGED---------EADGLKRLLTESLGR 123 (221)
T ss_pred hhhhheeeeeEEEeecCCCeEEEEeeCCE------EEecC-CCccCCCcc---------hhHHHHHHHHHHhcc
Confidence 3444444555556544 36666553321 23456 999999999 588899999999993
No 106
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=67.23 E-value=2 Score=39.06 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=39.3
Q ss_pred EEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCC
Q 027303 46 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 114 (225)
Q Consensus 46 ~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~ 114 (225)
+.++.++|.. .++|+.+-.. ...|.+| -|+....|+ =..||+||+.||||.+..
T Consensus 84 v~ga~ild~~~sr~llv~g~q-----a~sw~fp-rgK~~kdes---------d~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 84 VRGAIILDEKRSRCLLVKGWQ-----ASSWSFP-RGKISKDES---------DSDCAIREVTEETGFDYS 138 (348)
T ss_pred CchHhhhhhhhhhhheeecee-----ccccccc-Cccccccch---------hhhcchhcccchhhcCHH
Confidence 3455566654 4677654321 2358998 688888888 589999999999999986
No 107
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=64.83 E-value=3.6 Score=37.65 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=26.8
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeecc
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTC 78 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~ 78 (225)
.+.+..++.+.+|.+++.||.. +..+.|+|++|.
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~-~gl~~gl~~fP~ 268 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRPE-KGLLGGLWCFPQ 268 (342)
T ss_pred hheeeEEEEccCcchhhhhCcc-cCceeccccccc
Confidence 5566667778888999998874 457889999994
No 108
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=44.96 E-value=20 Score=22.51 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=11.3
Q ss_pred ccCCCCCCChhhhhhhhcHHHHHHHHHHhHh
Q 027303 79 CSHPLYRESELIEENALGVRNAAQRKLLDEL 109 (225)
Q Consensus 79 gG~ve~gEs~~~~~~~~~~~eaa~REl~EEt 109 (225)
||-..+|-- +...+.||+-||+
T Consensus 15 ggLasPgPv---------p~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPV---------PSSTALKELIEEL 36 (43)
T ss_dssp --------S----------HHHHHHHHHHHH
T ss_pred cccCCCCCC---------CchHHHHHHHHHH
Confidence 566666766 6788999999996
No 109
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=38.89 E-value=20 Score=22.67 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=20.1
Q ss_pred cCccceEEEEcCCCCEeeeeecccc
Q 027303 7 IDTFDRCILVDENDRVVGHENKYNC 31 (225)
Q Consensus 7 ~~~~E~~~~~d~~~~~~g~~~r~~~ 31 (225)
...-..++++|++|+++|..+++.+
T Consensus 27 ~~~~~~~~V~d~~~~~~G~is~~dl 51 (57)
T PF00571_consen 27 KNGISRLPVVDEDGKLVGIISRSDL 51 (57)
T ss_dssp HHTSSEEEEESTTSBEEEEEEHHHH
T ss_pred HcCCcEEEEEecCCEEEEEEEHHHH
Confidence 3445668999999999999998754
No 110
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=36.59 E-value=35 Score=23.51 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=28.3
Q ss_pred EEEEcCCCCEeeeeecccccchhhc---ccCCcceeEEEEEEEeCCCeEEEeee
Q 027303 13 CILVDENDRVVGHENKYNCHLMEKI---ESLNLLHRAFSVFLFNSKYELLLQQR 63 (225)
Q Consensus 13 ~~~~d~~~~~~g~~~r~~~~~~~~~---~~~~~~h~~v~v~i~d~~g~vLL~rR 63 (225)
.+++|.+|+++|...-. ...+.+ -..-.....-.++++|++|.++....
T Consensus 19 ~pi~~~~g~~~Gvv~~d--i~l~~l~~~i~~~~~~~~g~~~ivd~~G~ii~hp~ 70 (81)
T PF02743_consen 19 VPIYDDDGKIIGVVGID--ISLDQLSEIISNIKFGNNGYAFIVDKNGTIIAHPD 70 (81)
T ss_dssp EEEEETTTEEEEEEEEE--EEHHHHHHHHTTSBBTTTBEEEEEETTSBBCE-SS
T ss_pred EEEECCCCCEEEEEEEE--eccceeeeEEEeeEECCCEEEEEEECCCCEEEeCC
Confidence 57889999999986332 011111 11111223346788899999888644
No 111
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=27.84 E-value=84 Score=16.89 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=12.1
Q ss_pred eEEEEEEEeCCCeEEEe
Q 027303 45 RAFSVFLFNSKYELLLQ 61 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~ 61 (225)
-.+..+..|++|++++.
T Consensus 5 n~I~~i~~D~~G~lWig 21 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIG 21 (24)
T ss_dssp SCEEEEEE-TTSCEEEE
T ss_pred CeEEEEEEcCCcCEEEE
Confidence 45667788888999885
No 112
>PF07193 DUF1408: Protein of unknown function (DUF1408); InterPro: IPR009848 This entry is represented by Bacteriophage bIL285, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Lactococcus lactis and related phage proteins of around 75 residues in length. The function of this family is unknown.
Probab=25.13 E-value=99 Score=21.50 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=16.0
Q ss_pred eEEEEEEEe----CCCeEEEeeecCCCC
Q 027303 45 RAFSVFLFN----SKYELLLQQRSGTKV 68 (225)
Q Consensus 45 ~~v~v~i~d----~~g~vLL~rRs~~k~ 68 (225)
..++++++. ++|.+++.+|++++.
T Consensus 29 e~~g~vv~~t~~r~dgs~y~~~r~~~~~ 56 (75)
T PF07193_consen 29 ENRGVVVFETWERPDGSMYMTSRKKNKQ 56 (75)
T ss_pred hcccEEEEEEEEcCCCeEEEEEcccchh
Confidence 344555543 578999999987654
Done!