Query 027303
Match_columns 225
No_of_seqs 147 out of 1629
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pny_A Isopentenyl-diphosphate 100.0 2.3E-41 8E-46 292.0 22.5 206 8-224 35-246 (246)
2 2dho_A Isopentenyl-diphosphate 100.0 7.6E-41 2.6E-45 286.9 22.6 207 7-224 23-235 (235)
3 1hzt_A Isopentenyl diphosphate 100.0 3E-30 1E-34 212.1 15.8 171 9-202 2-172 (190)
4 3dup_A MUTT/nudix family prote 100.0 5.5E-28 1.9E-32 213.8 18.5 171 8-202 87-263 (300)
5 2fkb_A Putative nudix hydrolas 100.0 2.4E-27 8.1E-32 192.3 19.2 162 8-203 7-168 (180)
6 1q27_A Putative nudix hydrolas 99.9 3E-26 1E-30 184.4 17.4 145 7-179 3-152 (171)
7 3grn_A MUTT related protein; s 99.9 1.6E-20 5.6E-25 148.1 16.9 131 41-203 5-137 (153)
8 1sjy_A MUTT/nudix family prote 99.8 1.7E-19 6E-24 142.3 18.1 122 39-179 8-134 (159)
9 3i7u_A AP4A hydrolase; nudix p 99.8 1.1E-19 3.8E-24 141.8 14.4 123 44-201 4-127 (134)
10 3oga_A Nucleoside triphosphata 99.8 1.2E-19 4E-24 144.9 12.4 138 39-199 22-162 (165)
11 3r03_A Nudix hydrolase; struct 99.8 1.2E-19 4E-24 141.0 12.1 130 41-201 5-134 (144)
12 3hhj_A Mutator MUTT protein; n 99.8 4.5E-19 1.6E-23 140.5 13.1 130 40-200 25-154 (158)
13 3gwy_A Putative CTP pyrophosph 99.8 5E-19 1.7E-23 137.6 13.1 124 45-201 7-131 (140)
14 3exq_A Nudix family hydrolase; 99.8 4.3E-19 1.5E-23 141.8 12.6 130 40-201 6-136 (161)
15 1ktg_A Diadenosine tetraphosph 99.8 2.5E-18 8.5E-23 132.6 15.6 112 44-176 3-119 (138)
16 1vcd_A NDX1; nudix protein, di 99.8 3.5E-18 1.2E-22 129.8 15.6 118 45-200 3-121 (126)
17 2pbt_A AP4A hydrolase; nudix p 99.8 1.9E-18 6.4E-23 132.4 13.9 123 44-201 4-127 (134)
18 2o1c_A DATP pyrophosphohydrola 99.8 2.8E-18 9.5E-23 133.5 15.1 131 44-200 9-146 (150)
19 3shd_A Phosphatase NUDJ; nudix 99.8 1.8E-18 6.3E-23 135.9 14.1 126 44-201 5-132 (153)
20 1rya_A GDP-mannose mannosyl hy 99.8 3E-18 1E-22 135.3 14.6 118 43-175 17-138 (160)
21 2b0v_A Nudix hydrolase; struct 99.8 1.9E-18 6.5E-23 135.4 13.0 128 45-201 9-138 (153)
22 2rrk_A ORF135, CTP pyrophospho 99.8 2.9E-18 1E-22 132.2 13.3 126 44-202 8-133 (140)
23 2azw_A MUTT/nudix family prote 99.8 5.2E-18 1.8E-22 132.0 13.8 128 41-200 15-144 (148)
24 3eds_A MUTT/nudix family prote 99.8 4.2E-19 1.4E-23 140.5 7.1 117 39-178 16-138 (153)
25 4dyw_A MUTT/nudix family prote 99.8 3.5E-18 1.2E-22 135.9 12.3 127 40-199 25-153 (157)
26 2w4e_A MUTT/nudix family prote 99.8 3.4E-18 1.2E-22 134.2 11.7 114 45-179 6-121 (145)
27 3u53_A BIS(5'-nucleosyl)-tetra 99.8 9.1E-18 3.1E-22 133.0 14.1 113 45-177 4-127 (155)
28 1v8y_A ADP-ribose pyrophosphat 99.8 6.2E-18 2.1E-22 136.0 13.2 112 45-179 35-148 (170)
29 3ees_A Probable pyrophosphohyd 99.8 3.1E-18 1.1E-22 133.8 10.5 124 44-200 21-144 (153)
30 2yvp_A NDX2, MUTT/nudix family 99.7 6.1E-18 2.1E-22 137.2 11.3 114 45-179 42-158 (182)
31 2b06_A MUTT/nudix family prote 99.7 7.1E-18 2.4E-22 132.8 11.2 126 41-201 5-134 (155)
32 3fcm_A Hydrolase, nudix family 99.7 1.3E-17 4.6E-22 137.4 13.0 119 40-176 41-168 (197)
33 3son_A Hypothetical nudix hydr 99.7 1.1E-16 3.8E-21 125.3 17.5 123 46-201 7-139 (149)
34 1f3y_A Diadenosine 5',5'''-P1, 99.7 3.8E-18 1.3E-22 134.9 8.7 119 40-178 10-148 (165)
35 3e57_A Uncharacterized protein 99.7 2.4E-18 8.1E-23 145.1 7.1 144 39-200 62-207 (211)
36 3q93_A 7,8-dihydro-8-oxoguanin 99.7 2.2E-17 7.6E-22 134.1 11.8 126 43-201 23-149 (176)
37 1x51_A A/G-specific adenine DN 99.7 2.6E-17 8.8E-22 130.1 11.6 136 33-201 8-148 (155)
38 3f6a_A Hydrolase, nudix family 99.7 3.4E-17 1.2E-21 129.9 11.9 129 43-201 5-149 (159)
39 1nqz_A COA pyrophosphatase (MU 99.7 1.9E-17 6.5E-22 135.8 10.7 115 40-175 31-151 (194)
40 3gg6_A Nudix motif 18, nucleos 99.7 6.3E-18 2.1E-22 133.4 7.2 110 42-176 18-131 (156)
41 3i9x_A MUTT/nudix family prote 99.7 1.5E-17 5.2E-22 135.9 9.5 136 41-205 24-174 (187)
42 1mut_A MUTT, nucleoside tripho 99.7 1.5E-18 5.2E-23 131.9 3.3 119 48-199 8-126 (129)
43 2jvb_A Protein PSU1, mRNA-deca 99.7 5.1E-17 1.7E-21 126.7 11.9 109 45-179 5-118 (146)
44 1g0s_A Hypothetical 23.7 kDa p 99.7 1.9E-16 6.5E-21 132.4 15.1 116 44-179 57-183 (209)
45 2kdv_A RNA pyrophosphohydrolas 99.7 1E-16 3.4E-21 128.8 12.1 114 42-175 6-135 (164)
46 3id9_A MUTT/nudix family prote 99.7 5.4E-17 1.8E-21 130.1 10.5 124 40-199 19-148 (171)
47 3fk9_A Mutator MUTT protein; s 99.7 6.9E-17 2.4E-21 132.7 10.9 125 45-202 5-130 (188)
48 2yyh_A MUTT domain, 8-OXO-DGTP 99.7 1.4E-16 4.7E-21 123.4 11.5 108 43-173 8-119 (139)
49 2pqv_A MUTT/nudix family prote 99.7 2.3E-17 7.9E-22 129.9 6.8 111 41-175 16-129 (154)
50 3h95_A Nucleoside diphosphate- 99.7 6.4E-16 2.2E-20 127.7 15.5 127 44-202 26-157 (199)
51 3q91_A Uridine diphosphate glu 99.7 1.3E-16 4.4E-21 134.9 11.2 120 43-180 35-193 (218)
52 3q1p_A Phosphohydrolase (MUTT/ 99.7 5.4E-17 1.9E-21 135.1 7.6 111 43-175 67-178 (205)
53 3cng_A Nudix hydrolase; struct 99.7 3.1E-16 1.1E-20 128.6 11.9 125 44-204 40-165 (189)
54 2fvv_A Diphosphoinositol polyp 99.7 3.8E-16 1.3E-20 129.3 11.1 109 44-178 41-153 (194)
55 1vhz_A ADP compounds hydrolase 99.7 2.1E-16 7E-21 131.1 9.5 113 45-179 50-164 (198)
56 1mk1_A ADPR pyrophosphatase; n 99.7 7.7E-16 2.6E-20 128.1 13.0 114 45-179 44-162 (207)
57 2qjt_B Nicotinamide-nucleotide 99.7 1.3E-15 4.3E-20 135.5 14.9 136 42-201 206-346 (352)
58 3gz5_A MUTT/nudix family prote 99.7 5.2E-16 1.8E-20 132.6 11.8 138 43-211 21-164 (240)
59 3o6z_A GDP-mannose pyrophospha 99.7 8.2E-16 2.8E-20 126.6 12.6 115 43-179 44-170 (191)
60 3o8s_A Nudix hydrolase, ADP-ri 99.7 1E-16 3.5E-21 133.5 7.1 123 43-199 69-192 (206)
61 2fb1_A Conserved hypothetical 99.7 2.6E-16 8.8E-21 133.3 9.5 113 42-174 11-127 (226)
62 1k2e_A Nudix homolog; nudix/MU 99.6 3.5E-16 1.2E-20 123.9 9.0 123 45-202 2-135 (156)
63 2qjo_A Bifunctional NMN adenyl 99.6 1.4E-15 4.8E-20 134.3 13.8 136 42-201 201-339 (341)
64 1vk6_A NADH pyrophosphatase; 1 99.6 5.8E-16 2E-20 134.8 10.9 104 45-174 141-245 (269)
65 3f13_A Putative nudix hydrolas 99.6 6.6E-16 2.3E-20 124.4 10.1 115 43-201 15-129 (163)
66 3fsp_A A/G-specific adenine gl 99.6 6.5E-15 2.2E-19 133.2 11.4 130 34-200 230-359 (369)
67 2a6t_A SPAC19A8.12; alpha/beta 99.6 8.5E-15 2.9E-19 127.4 10.7 134 45-204 102-242 (271)
68 2dsc_A ADP-sugar pyrophosphata 99.6 6.9E-15 2.4E-19 122.8 8.6 114 44-178 61-186 (212)
69 2fml_A MUTT/nudix family prote 99.6 1.4E-14 4.7E-19 126.0 10.3 152 43-212 38-206 (273)
70 3fjy_A Probable MUTT1 protein; 99.6 3.6E-14 1.2E-18 127.5 13.2 119 53-202 35-174 (364)
71 1u20_A U8 snoRNA-binding prote 99.5 4.5E-15 1.5E-19 124.3 2.9 102 52-175 52-165 (212)
72 3qsj_A Nudix hydrolase; struct 99.5 4.1E-13 1.4E-17 114.5 14.7 145 45-200 9-208 (232)
73 2xsq_A U8 snoRNA-decapping enz 99.3 6.5E-13 2.2E-17 112.0 3.2 94 57-173 66-171 (217)
74 1q33_A Pyrophosphatase, ADP-ri 99.3 1.1E-11 3.6E-16 108.9 9.8 42 57-113 140-181 (292)
75 3rh7_A Hypothetical oxidoreduc 98.7 5.6E-08 1.9E-12 86.4 10.1 108 45-201 184-292 (321)
76 3kvh_A Protein syndesmos; NUDT 98.6 3.6E-08 1.2E-12 81.7 6.0 53 43-111 20-84 (214)
77 3bho_A Cleavage and polyadenyl 98.5 2.4E-07 8.1E-12 77.2 7.1 57 39-111 54-112 (208)
78 2v2f_A Penicillin binding prot 33.1 20 0.0007 18.9 1.5 13 14-26 8-20 (26)
79 1loi_A Cyclic 3',5'-AMP specif 28.1 14 0.00049 19.6 0.2 12 198-209 14-25 (26)
80 3sl7_A CBS domain-containing p 27.1 33 0.0011 25.5 2.4 28 5-32 124-151 (180)
81 4esy_A CBS domain containing m 21.5 63 0.0022 24.0 3.0 22 11-32 50-71 (170)
82 2ef7_A Hypothetical protein ST 21.0 38 0.0013 23.8 1.5 25 8-32 96-120 (133)
83 2rih_A Conserved protein with 20.6 39 0.0013 24.1 1.5 25 8-32 99-123 (141)
84 3lfr_A Putative metal ION tran 20.3 40 0.0014 24.1 1.5 25 8-32 98-122 (136)
No 1
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=292.01 Aligned_cols=206 Identities=45% Similarity=0.844 Sum_probs=178.9
Q ss_pred CccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCC--
Q 027303 8 DTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYR-- 85 (225)
Q Consensus 8 ~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~g-- 85 (225)
-++|+|++||++|+++|..+|++||.+.++ .++.+|++++++++|++|++||+||+..|..+||.|++|+|||+++|
T Consensus 35 ~~~E~~~lvd~~~~~iG~~~r~~~h~~~~~-~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~ 113 (246)
T 2pny_A 35 RLEEMLIVVDENDKVIGADTKRNCHLNENI-EKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPA 113 (246)
T ss_dssp HTTCEEEEECTTCCEEEEEEHHHHTBHHHH-TTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHH
T ss_pred hccceEEEEcCCCCEEEEEEhHHhcccccc-CCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCc
Confidence 368999999999999999999999976555 36889999999999989999999999999999999999988999999
Q ss_pred ----CChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCcccc
Q 027303 86 ----ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEV 161 (225)
Q Consensus 86 ----Es~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev 161 (225)
|++ .++++||+||++||||+.+..++++++.+++.+.|..+..++|.+++++++|++..+..+.++++|+
T Consensus 114 E~~~Et~------~~~~eAA~REl~EElGi~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~Ev 187 (246)
T 2pny_A 114 ELEEKDA------IGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSET 187 (246)
T ss_dssp HHCCGGG------HHHHHHHHHHHHHHHCCCTTTCCGGGSEEEEEEEEEEESSSSBEEEEEEEEEEEECCCCCCCCTTTE
T ss_pred ccccccc------hhHHHHHHHHHHHHHCCCccccCccccEEEEEEEEEecCCCceeeeEEEEEEEEEECCCCCCChHHe
Confidence 772 0128999999999999998755555678899988887766677778888988887766777888999
Q ss_pred ccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHHHhhhcccccccccCcCceeec
Q 027303 162 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224 (225)
Q Consensus 162 ~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (225)
.+++|++++++.+++...+. .|..|+||++.++++||..||+++.. |+++.|+++||++
T Consensus 188 ~~~~wv~~eel~~~l~~~~~--~~~~ftp~~~~i~~~~l~~ww~~~~~--~~~~~~~~~~~~~ 246 (246)
T 2pny_A 188 KSILYLSQEELWELLEREAR--GEVKVTPWLRTIAERFLYRWWPHLDD--VTPFVELHKIHRV 246 (246)
T ss_dssp EEEEEECHHHHHHHHHHHHH--TSSCBCHHHHHHHHHTHHHHGGGTTC--CGGGCCSSCCEEC
T ss_pred eEEEEEeHHHHHHHHHhccC--CCceECHhHHHHHHHHHHHHHHhhhh--hhhccCccceeeC
Confidence 99999999999999887310 14589999999999999999999998 9999999999986
No 2
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=100.00 E-value=7.6e-41 Score=286.91 Aligned_cols=207 Identities=55% Similarity=0.990 Sum_probs=178.9
Q ss_pred cCccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCC-
Q 027303 7 IDTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYR- 85 (225)
Q Consensus 7 ~~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~g- 85 (225)
..++|+|++||++|+++|..+|++||.+.++ .++.+|+++++++++++|++||+||+..|..+||.|++|+|||+++|
T Consensus 23 ~~~~E~~~lvd~~~~~~G~~~r~~~h~~~~~-~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge 101 (235)
T 2dho_A 23 QLLAEMCILIDENDNKIGAETKKNCHLNENI-EKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNP 101 (235)
T ss_dssp CSSCCEEEEECTTCCEEEEEEHHHHTBHHHH-TTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSH
T ss_pred hhcCcEEEEEcCCCCEEEEEEhHHhcccccc-CCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCC
Confidence 3578999999999999999999999976544 36889999999999989999999999999999999999988999999
Q ss_pred -----CChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccc
Q 027303 86 -----ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDE 160 (225)
Q Consensus 86 -----Es~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~E 160 (225)
|++ .++++||+||++||||+.+..++++++.+++++.|..+..++|.+++++++|++..+..+.++++|
T Consensus 102 ~E~~~E~~------~~~~~Aa~REl~EElGi~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~E 175 (235)
T 2dho_A 102 AELEESDA------LGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNE 175 (235)
T ss_dssp HHHCCGGG------HHHHHHHHHHHHHHHCCCGGGSCGGGSEEEEEEEEEEECSSSBEEEEEEEEEEEECCCCCCCCTTT
T ss_pred cccccccc------hhHHHHHHHHHHHHHCCCccccChhhcEEEEEEEEeccCCCccceeEEEEEEEEEECCCCcCChHH
Confidence 661 113899999999999999765555567889998888776667777888898988776677788899
Q ss_pred cccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHHHhhhcccccccccCcCceeec
Q 027303 161 VAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224 (225)
Q Consensus 161 v~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (225)
+.+++|++++++.+++...+. .|..|+||++.++++||..||+++.. |+.+.|+++||++
T Consensus 176 v~~~~wv~~~el~~~l~~~~~--~~~~ftp~~~~i~~~~L~~ww~~~~~--~~~~~~~~~~~~~ 235 (235)
T 2dho_A 176 IKSYCYVSKEELKELLKKAAS--GEIKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 235 (235)
T ss_dssp EEEEEEECHHHHHHHHHHHHT--TSSCBCHHHHHHHHHTHHHHHTTTTC--CGGGCCSSCEEEC
T ss_pred EEEEEEEcHHHHHHHHhhccC--CCcEECHhHHHHHHHHHHHHHhhcch--hhhccCccceeeC
Confidence 999999999999999987320 14589999999999999999999997 9999999999986
No 3
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.97 E-value=3e-30 Score=212.14 Aligned_cols=171 Identities=27% Similarity=0.413 Sum_probs=113.8
Q ss_pred ccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCCh
Q 027303 9 TFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 88 (225)
Q Consensus 9 ~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~ 88 (225)
++|+|++||++|+++|..+|..+|. ..+.+|+++++++++.+|++||++|+..+..+||.|++|+||++++||+
T Consensus 2 ~~E~~~v~d~~~~~~g~~~r~~~~~-----~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt- 75 (190)
T 1hzt_A 2 QTEHVILLNAQGVPTGTLEKYAAHT-----ADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGES- 75 (190)
T ss_dssp ----------------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCC-
T ss_pred CceEEEEECCCCCEeeeEEHhhhcc-----cCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCC-
Confidence 4699999999999999999999883 3678999999999998899999999877778899999944999999999
Q ss_pred hhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeC
Q 027303 89 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN 168 (225)
Q Consensus 89 ~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~ 168 (225)
+++||+||++||||+.+..+. .+++.+.|.....++...+.+.++|.+..+..+.++++|+.+++|++
T Consensus 76 --------~~~aa~REl~EEtGl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~ 143 (190)
T 1hzt_A 76 --------NEDAVIRRCRYELGVEITPPE----SIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD 143 (190)
T ss_dssp --------HHHHHHHHHHHHHCCCBSCCE----EEETTCEEEEECTTSCEEEEECCEEEEEBCSCCCCCTTTEEEEEEEC
T ss_pred --------HHHHHHHHHHHHHCCCchhhh----eeeeeEEEEeeCCCCCcceEEEEEEEEecCCCCcCCccceeeEEEec
Confidence 899999999999999987320 44555555433222222345566777766556666778999999999
Q ss_pred HHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303 169 REQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 202 (225)
Q Consensus 169 ~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 202 (225)
++++.+++..+ +..++|+++.++++|+..
T Consensus 144 ~~el~~~~~~~-----~~~~~p~~~~~~~~~~~~ 172 (190)
T 1hzt_A 144 LADVLHGIDAT-----PWAFSPWMVMQATNREAR 172 (190)
T ss_dssp HHHHHHHHHHC-----GGGBCHHHHHHHHSHHHH
T ss_pred HHHHHHHHHcC-----hhhcCchHHHHHHHHHHH
Confidence 99999999885 458999999999999643
No 4
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=99.96 E-value=5.5e-28 Score=213.80 Aligned_cols=171 Identities=13% Similarity=0.064 Sum_probs=145.3
Q ss_pred CccceEEEEcCCC-CEeeeeecccccchhhcccCCcceeEEEEEEEeCCC---eEEEeeecCCCCCCCCCeeeccccCCC
Q 027303 8 DTFDRCILVDEND-RVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPL 83 (225)
Q Consensus 8 ~~~E~~~~~d~~~-~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g---~vLL~rRs~~k~~~pg~W~~p~gG~ve 83 (225)
=++|++++||++| ++++..+|..++. .|++|++|++.+++.++ ++||+||+..|..|||+|+..+|||++
T Consensus 87 wr~E~~~V~~~~~~~~~~~~eR~~~~~------~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~ 160 (300)
T 3dup_A 87 PRGELYRVNQSWGEPTLMLLDRAVVPT------FGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQP 160 (300)
T ss_dssp CCSCEEEECSSTTSCCCEEEEGGGTGG------GTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECC
T ss_pred cccccEEeecCCCCeeeEEEEhhhccc------cceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCC
Confidence 4789999999997 8999999998885 79999999999999887 999999999999999999988899999
Q ss_pred CCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCcccc
Q 027303 84 YRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEV 161 (225)
Q Consensus 84 ~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev 161 (225)
+||+ +.+||+||+.||+|+.+..+. .+.+.+.+.|......+ .+++..|+|.+..+ ..+.++++|+
T Consensus 161 ~GEs---------~~eaA~REl~EElGI~~~~~~--~l~~~g~i~y~~~~~~G-~~~E~~~vy~~~l~~~~~p~~~~~EV 228 (300)
T 3dup_A 161 ADLS---------LRQNLIKECAEEADLPEALAR--QAIPVGAITYCMESPAG-IKPDTLFLYDLALPEDFRPHNTDGEM 228 (300)
T ss_dssp TTSC---------HHHHHHHHHHHHHCCCHHHHT--TCEEEEEEEEEEEETTE-EEEEEEEEEEEECCTTCCCCCTTSSE
T ss_pred CCCC---------HHHHHHHHHHHHhCCChhhhh--hccccceEEEEEecCCC-eEEEEEEEEEEEecCCCcCCCCchHh
Confidence 9999 799999999999999875322 35667777776654444 34677788876653 3456788999
Q ss_pred ccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303 162 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 202 (225)
Q Consensus 162 ~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 202 (225)
++++|++++|+.+++.+ |+.|+|++..++-+||..
T Consensus 229 ~~~~~v~~~El~~~l~~------pg~F~p~~~lV~ldfl~R 263 (300)
T 3dup_A 229 ADFMLWPAAKVVEAVRT------TEAFKFNVNLTVIDFAIR 263 (300)
T ss_dssp EEEEEEEHHHHHHHHHH------CCCBCTTHHHHHHHHHHH
T ss_pred heEEEECHHHHHHHHhc------CCCcCccHHHHHHHHHHH
Confidence 99999999999999988 248999999999999754
No 5
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.95 E-value=2.4e-27 Score=192.34 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=130.7
Q ss_pred CccceEEEEcCCCCEeeeeecccccchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCC
Q 027303 8 DTFDRCILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRES 87 (225)
Q Consensus 8 ~~~E~~~~~d~~~~~~g~~~r~~~~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs 87 (225)
.++|+|++||++|+++|..+|..++. .+..|+++++++++.+|++||++|+..+..+||.|++|+||++++||+
T Consensus 7 ~~~E~~~i~d~~~~~~g~~~r~~~~~------~~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~ 80 (180)
T 2fkb_A 7 ASTEWVDIVNEENEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQ 80 (180)
T ss_dssp -CCCEEEEECTTSCEEEEEEHHHHHH------HTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCC
T ss_pred CCCeeEEEECCCCCEeeEEEHHHhhc------cCceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCC
Confidence 47999999999999999999987653 678899999999998899999999877777899999955999999999
Q ss_pred hhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEe
Q 027303 88 ELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYV 167 (225)
Q Consensus 88 ~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv 167 (225)
+.+||+||++||||+.+.. +..++.+.+.... .+...++|.+.....+.++++|+.+++|+
T Consensus 81 ---------~~~aa~REl~EEtGl~~~~-----~~~l~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~E~~~~~W~ 141 (180)
T 2fkb_A 81 ---------LLESARREAEEELGIAGVP-----FAEHGQFYFEDKN-----CRVWGALFSCVSHGPFALQEDEVSEVCWL 141 (180)
T ss_dssp ---------HHHHHHHHHHHHHCCBSCC-----CEEEEEEEEEETT-----EEEEEEEEEEECCCCCCCCTTTEEEEEEE
T ss_pred ---------HHHHHHHHHHHHHCCCccc-----eEEEEEEEecCCC-----ceEEEEEEEEecCCCcCCChhHhheEEEe
Confidence 8999999999999998763 3456666554321 14455677776555566677899999999
Q ss_pred CHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHH
Q 027303 168 NREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKW 203 (225)
Q Consensus 168 ~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 203 (225)
+++++.+++. .+.|....++..|+...
T Consensus 142 ~~~el~~~~~---------~~~~~~~~~l~~~~~~~ 168 (180)
T 2fkb_A 142 TPEEITARCD---------EFTPDSLKALALWMKRN 168 (180)
T ss_dssp CHHHHHTTGG---------GBCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHH---------HhCCcHHHHHHHHHHhh
Confidence 9999998754 27788888888886543
No 6
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.94 E-value=3e-26 Score=184.41 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=117.3
Q ss_pred cCccceEEEEcCCCCEeeeeecccc---cchhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCee-eccccCC
Q 027303 7 IDTFDRCILVDENDRVVGHENKYNC---HLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWT-NTCCSHP 82 (225)
Q Consensus 7 ~~~~E~~~~~d~~~~~~g~~~r~~~---~~~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~-~p~gG~v 82 (225)
++++|+|++||.+|+++|..+|.++ |. . |+++++++++.+|++||+||+..+..+||.|+ +| ||++
T Consensus 3 ~~~~E~~~~~d~~~~~~g~~~r~~~~l~~~------~---~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~P-gG~v 72 (171)
T 1q27_A 3 GVSDERLDLVNERDEVVGQILRTDPALRWE------R---VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSV-GGAV 72 (171)
T ss_dssp CCCSSEEEEESSSSCEEEEEESSCTTSCTT------S---CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSE-EEEC
T ss_pred cccceeeeeecCCCCEeceEEhhhhccccc------c---ceEEEEEEECCCCeEEEEEecCCCCCCCCcccccc-Cccc
Confidence 3579999999999999999999887 63 2 89999999998899999999877777899999 88 9999
Q ss_pred CCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEE-EEcCCCCCCcceEEEEEEEEecCccccCCcccc
Q 027303 83 LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL-YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEV 161 (225)
Q Consensus 83 e~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~-y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev 161 (225)
++||+ +.+||+||++||||+.+... ++.+++.+. |..+ . +...++|.+..+..+.++++|+
T Consensus 73 e~gEs---------~~~aa~REl~EEtGl~~~~~---~l~~~~~~~~~~~~--~----~~~~~~f~~~~~~~~~~~~~E~ 134 (171)
T 1q27_A 73 QSGET---------YEEAFRREAREELNVEIDAL---SWRPLASFSPFQTT--L----SSFMCVYELRSDATPIFNPNDI 134 (171)
T ss_dssp SSSSC---------HHHHHHHHHHHHHSCTTSSS---CEEEEEEECSSSSC--C----SSEEEEEEEECCCCCCSCTTTC
T ss_pred cCCCC---------HHHHHHHHHHHHHCCccccc---ceEEEEEEeccCCC--C----ccEEEEEEEEECCccccCchhh
Confidence 99999 79999999999999998742 345565543 2221 1 1255667666555556677899
Q ss_pred ccEEEeCHHHHHHHHHhc
Q 027303 162 AEYKYVNREQLKELLRKA 179 (225)
Q Consensus 162 ~~~~Wv~~eel~~~~~~~ 179 (225)
.+++|++++++.+++...
T Consensus 135 ~~~~W~~~~el~~~~~~~ 152 (171)
T 1q27_A 135 SGGEWLTPEHLLARIAAG 152 (171)
T ss_dssp SCCEEECHHHHHHHHHHH
T ss_pred heEEEecHHHHHHHHhcC
Confidence 999999999999987775
No 7
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.86 E-value=1.6e-20 Score=148.12 Aligned_cols=131 Identities=20% Similarity=0.211 Sum_probs=100.6
Q ss_pred CcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303 41 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 120 (225)
Q Consensus 41 ~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~ 120 (225)
...+.++++++++.+|++||++|+..+..++|.|.+| ||++++||+ +.+||+||++||||+.+...
T Consensus 5 ~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~REl~EE~Gl~~~~~---- 70 (153)
T 3grn_A 5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLP-GGKVNPDES---------LKEGVAREVWEETGITMVPG---- 70 (153)
T ss_dssp SCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCCC----
T ss_pred CceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECc-eeecCCCCC---------HHHHHHhhhhhhhCcEeecc----
Confidence 4477888999999889999999987666789999999 999999999 89999999999999998743
Q ss_pred eeeeeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcc-cChhHHHHHHH
Q 027303 121 FTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK-LSPWFRLVVDN 198 (225)
Q Consensus 121 l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~-~~p~~~~~~~~ 198 (225)
..++.+.+..+. .+...++|.+.. .+.+.+ .+|..+++|++++++.++ . +.|.++.+++.
T Consensus 71 -~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~-----------~~~~~~~~~~l~~ 132 (153)
T 3grn_A 71 -DIAGQVNFELTE-----KKVIAIVFDGGYVVADVKL-SYEHIEYSWVSLEKILGM-----------ETLPAYFRDFFER 132 (153)
T ss_dssp -SEEEEEEEECSS-----CEEEEEEEEEEECCCCCCC-CTTEEEEEEECHHHHTTC-----------SSSCHHHHHHHHH
T ss_pred -eEEEEEEEecCC-----ceEEEEEEEEEecCCcEec-CCCcceEEEEEHHHhhhc-----------ccchHHHHHHHHH
Confidence 345555544332 133445565553 333433 378899999999999764 4 88999999888
Q ss_pred HHHHH
Q 027303 199 FLFKW 203 (225)
Q Consensus 199 ~l~~~ 203 (225)
|+..-
T Consensus 133 l~~~~ 137 (153)
T 3grn_A 133 FDREN 137 (153)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 85543
No 8
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.84 E-value=1.7e-19 Score=142.25 Aligned_cols=122 Identities=25% Similarity=0.295 Sum_probs=94.0
Q ss_pred cCCcceeEEEEEEEeCCCeEEEeeecCC--CCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCC
Q 027303 39 SLNLLHRAFSVFLFNSKYELLLQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 116 (225)
Q Consensus 39 ~~~~~h~~v~v~i~d~~g~vLL~rRs~~--k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i 116 (225)
+.+..|.++++++++.+|++||++|+.. +..++|.|++| ||+++.||+ +.+||+||++||||+.+..
T Consensus 8 ~~~~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~- 76 (159)
T 1sjy_A 8 HVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIP-SGAVEDGEN---------PQDAAVREACEETGLRVRP- 76 (159)
T ss_dssp CCCCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECS-EEECCTTSC---------HHHHHHHHHHHHHSCCEEE-
T ss_pred CCCeEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECC-ccccCCCCC---------HHHHHHHHHHHHHCcccee-
Confidence 3567789999999988899999999752 44578999999 999999999 8999999999999999763
Q ss_pred CCCceeeeeEEEEEcCCCCCCcceEEEEEEEEec-Ccc-ccC-CccccccEEEeCHHHHHHHHHhc
Q 027303 117 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVS-VNP-NPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 117 ~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~-~~~-~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+..++.+.+..+. + .+...++|.+.. ... +.+ +++|+.+++|++++++.+++..+
T Consensus 77 ----~~~l~~~~~~~~~--~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 134 (159)
T 1sjy_A 77 ----VKFLGAYLGRFPD--G--VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAG 134 (159)
T ss_dssp ----EEEEEEEEEECTT--S--CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred ----eEEEEEEecccCC--C--ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhhcc
Confidence 3456655544322 1 245566776654 333 555 67889999999999999998875
No 9
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.83 E-value=1.1e-19 Score=141.84 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=86.9
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
+.++++++++ +|++||+||. .|.|.+| ||++++||| +.+||+||++||||+.+.. +.+
T Consensus 4 ~~aag~vv~~-~~~vLL~~r~------~g~W~~P-gG~ve~gEt---------~~~aa~RE~~EEtGl~~~~-----~~~ 61 (134)
T 3i7u_A 4 EFSAGGVLFK-DGEVLLIKTP------SNVWSFP-KGNIEPGEK---------PEETAVREVWEETGVKGEI-----LDY 61 (134)
T ss_dssp EEEEEEEEEE-TTEEEEEECT------TSCEECC-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE-----EEE
T ss_pred EEEEEEEEEE-CCEEEEEEeC------CCcEECC-eeEecCCCC---------HHHHHHHHHHHhcCceEEE-----eee
Confidence 4577777776 4899999875 2789999 999999999 8999999999999999763 344
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 201 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 201 (225)
++.+.|..+..+... +..+++|.+.. ++.+.++ +|+.+++|++++++.+++ ..|..+.++++++.
T Consensus 62 l~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~l-----------~~~~~r~il~~a~~ 127 (134)
T 3i7u_A 62 IGEIHYWYTLKGERI-FKTVKYYLMKYKEGEPRPS-WEVKDAKFFPIKEAKKLL-----------KYKGDKEIFEKALK 127 (134)
T ss_dssp EEEEEEEEEETTEEE-EEEEEEEEEEEEEECCCCC-TTSSEEEEEEHHHHHHHB-----------CSHHHHHHHHHHHH
T ss_pred eeeeeEEecCCCceE-EEEEEEEEEEEcCCcCcCC-hhheEEEEEEHHHHhhhc-----------CChHHHHHHHHHHH
Confidence 555544443322211 33345565554 3444444 689999999999998873 23555667776653
No 10
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.82 E-value=1.2e-19 Score=144.87 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=86.5
Q ss_pred cCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303 39 SLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 118 (225)
Q Consensus 39 ~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~ 118 (225)
..+..|+++.+++++.+|++||+||+..+..+||.|++| ||++++||+ +++||+||++||||+.+....+
T Consensus 22 ~~~~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~ 91 (165)
T 3oga_A 22 SNAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLILSDI 91 (165)
T ss_dssp --CCEEEEEEEEEEEETTEEEEEEECC------CCEECC-CEECCTTCC---------HHHHHHHHHHHHHCSSCCEEEE
T ss_pred CCCcceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECC-ccccCCCCC---------HHHHHHHHHHHHhCCCccccce
Confidence 345678888888888889999999987777789999999 999999999 7999999999999999863221
Q ss_pred CceeeeeEE-EEEcCCCCCCcce-EEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHH
Q 027303 119 DEFTPLGRI-LYKAPSDGKWGEH-ELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV 195 (225)
Q Consensus 119 ~~l~~l~~~-~y~~~~~~~~~e~-~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~ 195 (225)
..+.+...+ .+..+. ..+... .+.++|.+... ..+.. ++|+.+++|++++++.++ .+.|..+.+
T Consensus 92 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~-----------~~~~~~~~~ 158 (165)
T 3oga_A 92 TPWTFRDDIRIKTYAD-GRQEEIYMIYLIFDCVSANRDICI-NDEFQDYAWVKPEELALY-----------DLNVATRHT 158 (165)
T ss_dssp EEEEEEEEEEEEEC---CCEEEEEEEEEEEEEEESCCCCCC-CTTEEEEEEECGGGGGGS-----------CBCHHHHHH
T ss_pred eeeeeecceeeEecCC-CCceeEEEEEEEEEeeccCCCccC-CchheeeEEccHHHHhhC-----------CCCHHHHHH
Confidence 111111111 122221 111111 12233444432 33333 478899999999999875 466766666
Q ss_pred HHHH
Q 027303 196 VDNF 199 (225)
Q Consensus 196 ~~~~ 199 (225)
++..
T Consensus 159 l~~~ 162 (165)
T 3oga_A 159 LALK 162 (165)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6543
No 11
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.82 E-value=1.2e-19 Score=141.00 Aligned_cols=130 Identities=19% Similarity=0.136 Sum_probs=95.2
Q ss_pred CcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303 41 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 120 (225)
Q Consensus 41 ~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~ 120 (225)
...+.++++++++.+|++||+||+..+ .++|.|++| ||+++.||+ +.+||+||++||||+.+... .
T Consensus 5 ~~~~~~~~~vi~~~~~~vLl~~r~~~~-~~~g~w~lP-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~---~ 70 (144)
T 3r03_A 5 LPILLVTAAALIDPDGRVLLAQRPPGK-SLAGLWEFP-GGKLEPGET---------PEAALVRELAEELGVDTRAS---C 70 (144)
T ss_dssp -CEEEEEEEEEBCTTSCEEEEECCTTS-SSTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCBCCGG---G
T ss_pred CceeEEEEEEEEcCCCEEEEEEeCCCC-CCCCcEECC-CcEecCCCC---------HHHHHHHHHHHHhCceeecc---c
Confidence 346778888888888999999998654 489999998 999999999 79999999999999998743 2
Q ss_pred eeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303 121 FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 200 (225)
Q Consensus 121 l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l 200 (225)
+..++.+.+.... .+...++|.+..... .++..|..+++|++++++.++ .+.+..+.+++.+.
T Consensus 71 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~ 133 (144)
T 3r03_A 71 LAPLAFASHSYDT-----FHLLMPLYACRSWRG-RATAREGQTLAWVRAERLREY-----------PMPPADLPLIPILQ 133 (144)
T ss_dssp CEEEEEEEEECSS-----SEEEEEEEEECCCBS-CCCCCSSCEEEEECGGGGGGS-----------CCCTTTTTHHHHHH
T ss_pred eEEEEeeeccCCC-----eEEEEEEEEEEecCC-ccCCCCcceEEEEeHHHhccC-----------CCCcchHHHHHHHh
Confidence 3344444444321 144456666654322 344678899999999999775 46676777777764
Q ss_pred H
Q 027303 201 F 201 (225)
Q Consensus 201 ~ 201 (225)
.
T Consensus 134 ~ 134 (144)
T 3r03_A 134 D 134 (144)
T ss_dssp H
T ss_pred C
Confidence 3
No 12
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.80 E-value=4.5e-19 Score=140.49 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=94.7
Q ss_pred CCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303 40 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 119 (225)
Q Consensus 40 ~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~ 119 (225)
....+.++++++++.+|++||+||...+ .++|.|++| ||++++||+ +.+||+||+.||||+.+...
T Consensus 25 ~~~~~~~~~~~i~~~~~~vLL~~r~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~--- 90 (158)
T 3hhj_A 25 KSSLLIVVACALLDQDNRVLLTQRPEGK-SLAGLWEFP-GGKVEQGET---------PEASLIRELEEELGVHVQAD--- 90 (158)
T ss_dssp --CEEEEEEEEEBCTTSEEEEEECCCTT-SCCCCCBCC-EEECCTTCC---------HHHHHHHHHHHHHCCBCCGG---
T ss_pred CCceEEEEEEEEEeCCCEEEEEEeCCCC-CCCCEEECC-ceeecCCCC---------HHHHHHHHHHHHhCcEeecc---
Confidence 3456778888888888999999998554 589999998 999999999 89999999999999998743
Q ss_pred ceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303 120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 199 (225)
Q Consensus 120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (225)
.+..++.+.+.... .+...++|.+..... .++..|..+++|++++++.++ .+.+..+.+++.+
T Consensus 91 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~il~~~ 153 (158)
T 3hhj_A 91 NLFPLTFASHGYET-----FHLLMPLYFCSHYKG-VAQGREGQNLKWIFINDLDKY-----------PMPEADKPLVQVL 153 (158)
T ss_dssp GCEEEEEEEEECSS-----CEEEEEEEEESCCBS-CCCCTTSCEEEEEEGGGGGGS-----------CCCTTTHHHHHHH
T ss_pred eEEEEEEEeeccCC-----cEEEEEEEEEEECCC-ccCCccccceEEEcHHHHhhC-----------CCCcchHHHHHHH
Confidence 23344444444321 134455666654322 345678899999999999765 4667777777766
Q ss_pred H
Q 027303 200 L 200 (225)
Q Consensus 200 l 200 (225)
+
T Consensus 154 ~ 154 (158)
T 3hhj_A 154 K 154 (158)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.80 E-value=5e-19 Score=137.57 Aligned_cols=124 Identities=14% Similarity=0.039 Sum_probs=86.9
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCC-CCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVT-FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~-~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
.++++++.+ +|++||+||+..+.. ++|.|.+| ||++++||+ +.+||+||++||||+.+.. ...
T Consensus 7 ~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EE~Gl~~~~-----~~~ 70 (140)
T 3gwy_A 7 EVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFP-GGKVEEGES---------LQEALQREIMEEMDYVIEV-----GEK 70 (140)
T ss_dssp EEEEEEEEE-TTEEEEEEC---------CCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCEEE-----EEE
T ss_pred EEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECC-CccCCCCCC---------HHHHHHHHHHHhhCcEEEe-----ceE
Confidence 456666666 799999999865432 78999999 999999999 7999999999999999763 344
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 201 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 201 (225)
++.+.+..+. .+...++|.+..... .++.+|..+++|++++++.++ .+.|..+.+++.+..
T Consensus 71 ~~~~~~~~~~-----~~~~~~~f~~~~~~~-~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~il~~~~~ 131 (140)
T 3gwy_A 71 LLTVHHTYPD-----FEITMHAFLCHPVGQ-RYVLKEHIAAQWLSTREMAIL-----------DWAEADKPIVRKISE 131 (140)
T ss_dssp EEEEECCCSS-----CCEEEEEEEEEECCS-CCCCCSSCEEEEECHHHHTTS-----------CBCGGGHHHHHHHHC
T ss_pred EEEEEEEeCC-----ceEEEEEEEEEecCC-cccccccceeEeccHHHHhhC-----------CCCcccHHHHHHHHh
Confidence 5555443321 134556676664322 334578899999999999775 577888888887744
No 14
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.80 E-value=4.3e-19 Score=141.76 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=97.2
Q ss_pred CCcceeEEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303 40 LNLLHRAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 118 (225)
Q Consensus 40 ~~~~h~~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~ 118 (225)
....+.++.+++++.+ +++||+||+. ..|+|.|++| ||++++||+ +.+||+||++||||+.+..
T Consensus 6 ~~~~~~~v~~vi~~~~~~~vLL~~r~~--~~~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~--- 70 (161)
T 3exq_A 6 TQPVELVTMVMVTDPETQRVLVEDKVN--VPWKAGHSFP-GGHVEVGEP---------CATAAIREVFEETGLRLSG--- 70 (161)
T ss_dssp CCCEEEEEEEEEBCTTTCCEEEECCCC--CTTTCSBBCC-CCBCCTTSC---------HHHHHHHHHHHHHCCEESC---
T ss_pred cCCceEEEEEEEEeCCCCEEEEEEccC--CCCCCCEEcc-ceecCCCCC---------HHHHHHHHHHHhhCcEecC---
Confidence 3457788888888876 6999999883 3578899999 999999999 8999999999999999763
Q ss_pred CceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303 119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 198 (225)
Q Consensus 119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~ 198 (225)
...++.+.+..+... .+...++|.+.... ..++..|..+++|++++++.++ .+.+..+.+++.
T Consensus 71 --~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~ 133 (161)
T 3exq_A 71 --VTFCGTCEWFDDDRQ---HRKLGLLYRASNFT-GTLKASAEGQLSWLPITALTRE-----------NSAASLPEFLQV 133 (161)
T ss_dssp --CEEEEEEEEECSSCS---SEEEEEEEEECCEE-SCCCGGGTTTEEEECGGGCCTT-----------TBCTTHHHHHHH
T ss_pred --CcEEEEEecccCCCC---eEEEEEEEEEeccC-CccCCCccceEEEeeHHHhhhC-----------ccChHHHHHHHH
Confidence 345666655543221 13444556554321 1245678899999999999664 577888888888
Q ss_pred HHH
Q 027303 199 FLF 201 (225)
Q Consensus 199 ~l~ 201 (225)
++.
T Consensus 134 ~~~ 136 (161)
T 3exq_A 134 FTG 136 (161)
T ss_dssp HTT
T ss_pred Hhh
Confidence 876
No 15
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.79 E-value=2.5e-18 Score=132.55 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=81.2
Q ss_pred eeEEEEEEEeC---CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303 44 HRAFSVFLFNS---KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 120 (225)
Q Consensus 44 h~~v~v~i~d~---~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~ 120 (225)
++++++++++. ++++||+||+. .+|.|++| ||++++||+ +.+||+||++||||+.+..+.+
T Consensus 3 ~~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~~~-- 66 (138)
T 1ktg_A 3 VKAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPP-KGHVDPGED---------EWQAAIRETKEEANITKEQLTI-- 66 (138)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEESS----TTCCEESS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGEEE--
T ss_pred eEEEEEEEEEecCCCcEEEEEEccC----CCCcEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCCccceEE--
Confidence 46778888765 46899999862 36899998 999999999 8999999999999997653321
Q ss_pred e-eeeeEEEEEcCCCCCCcceEEEEEEEEecCc-cccCCccccccEEEeCHHHHHHHH
Q 027303 121 F-TPLGRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKELL 176 (225)
Q Consensus 121 l-~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~~~~~Ev~~~~Wv~~eel~~~~ 176 (225)
+ .+++.+.|..+ ..+...++|.+.... ....+++|+.+++|++++++.++.
T Consensus 67 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~ 119 (138)
T 1ktg_A 67 HEDCHETLFYEAK-----GKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIA 119 (138)
T ss_dssp EEEEEEEEEEEET-----TEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHH
T ss_pred eccccceEEEEeC-----CCceEEEEEEEEecCCcccCCCchhcEeEeccHHHHHHhh
Confidence 1 23344444433 114455666666533 334567889999999999999974
No 16
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.79 E-value=3.5e-18 Score=129.75 Aligned_cols=118 Identities=25% Similarity=0.277 Sum_probs=86.3
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.++++++++.+|++||+||+. |.|++| ||++++||+ +.+||+||++||||+.+.. ...+
T Consensus 3 ~~~~~vi~~~~~~vLl~~r~~------g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~-----~~~~ 61 (126)
T 1vcd_A 3 LGAGGVVFNAKREVLLLRDRM------GFWVFP-KGHPEPGES---------LEEAAVREVWEETGVRAEV-----LLPL 61 (126)
T ss_dssp EEEEEEEECTTSCEEEEECTT------SCEECC-EECCCTTCC---------HHHHHHHHHHHHHCCEEEE-----EEEE
T ss_pred eEEEEEEEcCCCEEEEEEECC------CCccCC-cCcCCCCCC---------HHHHHHHHHHHhhCcEeee-----ccEE
Confidence 467888898888999999863 789999 999999999 7999999999999999763 3456
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 200 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l 200 (225)
+.+.|..+ .. +...++|.+.. ++. ..+++|+.+++|++++++.++ .+.+..+.++++++
T Consensus 62 ~~~~~~~~---~~--~~~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~-----------~~~~~~~~~l~~~~ 121 (126)
T 1vcd_A 62 YPTRYVNP---KG--VEREVHWFLMRGEGA-PRLEEGMTGAGWFSPEEARAL-----------LAFPEDLGLLEVAL 121 (126)
T ss_dssp EEEEEECT---TS--CEEEEEEEEEEEESC-CCCCTTCCEEEEECHHHHHHH-----------BCSHHHHHHHHHHH
T ss_pred eEEEEecC---Cc--eEEEEEEEEEEcCCC-CCCCcceeeeEEcCHHHHHHh-----------hcChhHHHHHHHHH
Confidence 66655542 11 23334454432 223 334578899999999999886 34555666666654
No 17
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.79 E-value=1.9e-18 Score=132.41 Aligned_cols=123 Identities=20% Similarity=0.182 Sum_probs=87.3
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
..++++++++ +|++||+||+. |.|.+| ||++++||+ +.+||+||++||||+.+.. ...
T Consensus 4 ~~~~~~vi~~-~~~vLl~~r~~------~~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~-----~~~ 61 (134)
T 2pbt_A 4 EFSAGGVLFK-DGEVLLIKTPS------NVWSFP-KGNIEPGEK---------PEETAVREVWEETGVKGEI-----LDY 61 (134)
T ss_dssp EEEEEEEEEE-TTEEEEEECTT------SCEECC-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE-----EEE
T ss_pred ceEEEEEEEE-CCEEEEEEeCC------CcEECC-ccccCCCCC---------HHHHHHHHHHHHHCCccEE-----eee
Confidence 3567777787 58999999864 899999 999999999 8999999999999999763 344
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 201 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 201 (225)
++.+.+..+..+. ..+...++|.+.. .....+++ |+.+++|++++++.++ .+.|..+.++++++.
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~~ 127 (134)
T 2pbt_A 62 IGEIHYWYTLKGE-RIFKTVKYYLMKYKEGEPRPSW-EVKDAKFFPIKEAKKL-----------LKYKGDKEIFEKALK 127 (134)
T ss_dssp EEEEEEEEEETTE-EEEEEEEEEEEEEEEECCCCCT-TSSEEEEEEHHHHHHH-----------CCSHHHHHHHHHHHH
T ss_pred eeEEEEEeeCCCc-EEEEEEEEEEEEecCCCcCCCc-ceeEEEEEcHHHHHhh-----------hcchhHHHHHHHHHH
Confidence 5554444332221 1134456666654 23344443 8999999999999986 355556666666643
No 18
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.79 E-value=2.8e-18 Score=133.46 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=89.3
Q ss_pred eeEEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 44 HRAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 44 h~~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
+.++++++++.+ |++||+||+.. ||.|++| ||++++||+ +.+||+||++||||+.+....+.-+.
T Consensus 9 ~~~v~~~i~~~~~~~vLl~~r~~~----~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~~~~~~~ 74 (150)
T 2o1c_A 9 PVSILVVIYAQDTKRVLMLQRRDD----PDFWQSV-TGSVEEGET---------APQAAMREVKEEVTIDVVAEQLTLID 74 (150)
T ss_dssp SEEEEEEEEETTTCEEEEEECSSS----TTCEESE-EEECCTTCC---------HHHHHHHHHHHHHCCCHHHHTCCEEE
T ss_pred ceEEEEEEEeCCCCEEEEEEecCC----CCceECC-ccccCCCCC---------HHHHHHHHHHHHhCCCccccceeEEe
Confidence 357888888875 89999998753 7999998 999999999 79999999999999998632111111
Q ss_pred eeeEEEEEc------CCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHH
Q 027303 123 PLGRILYKA------PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV 196 (225)
Q Consensus 123 ~l~~~~y~~------~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~ 196 (225)
......|.. ...++. .+...++|.+..........+|+.+++|++++++.++ .+.|..+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~~l 142 (150)
T 2o1c_A 75 CQRTVEFEIFSHLRHRYAPGV-TRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAAL-----------TKSWSNRQAI 142 (150)
T ss_dssp EEEEEEEECCGGGGGGBCTTC-CEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHH-----------CSCHHHHHHH
T ss_pred eeceeeeeeecccccccCCCC-cceEEEEEEEEcCCCCCcChhHhhccEeecHHHHHhh-----------hcCHHHHHHH
Confidence 111222211 011111 1445566766654322233478999999999999987 4667777777
Q ss_pred HHHH
Q 027303 197 DNFL 200 (225)
Q Consensus 197 ~~~l 200 (225)
+.++
T Consensus 143 ~~~~ 146 (150)
T 2o1c_A 143 EQFV 146 (150)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7764
No 19
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.79 E-value=1.8e-18 Score=135.90 Aligned_cols=126 Identities=18% Similarity=0.271 Sum_probs=92.4
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
|.++.+++. .+|++||+||+. ..+|.|.+| ||++++||+ +.+||+||++||||+.+.. ...
T Consensus 5 ~~~v~~ii~-~~~~vLl~~r~~---~~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~~ 65 (153)
T 3shd_A 5 HVTVACVVH-AEGKFLVVEETI---NGKALWNQP-AGHLEADET---------LVEAAARELWEETGISAQP-----QHF 65 (153)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEE---TTEEEEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCC-----CEE
T ss_pred ceEEEEEEE-eCCEEEEEEecC---CCCCCEECC-eEEeCCCCC---------HHHHHHHHHHHHHCccccc-----CcE
Confidence 445555554 469999999872 357899999 999999999 8999999999999999873 244
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecCc--cccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRDV--SVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 201 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~--~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 201 (225)
++.+.|..+.. .+...++|.+.... ...++++|+.+++|++++++. . .+....|.....+.+|+.
T Consensus 66 ~~~~~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~----~-----~~~~~~~~~~~~l~~~~~ 132 (153)
T 3shd_A 66 IRMHQWIAPDK----TPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEIL----Q-----ASNLRSPLVAESIRCYQS 132 (153)
T ss_dssp EEEEEECCTTS----CCEEEEEEEEECSSCCCCCCCSTTCCEEEEECHHHHH----T-----CSCBSSTHHHHHHHHHHH
T ss_pred EEEEEEecCCC----ceEEEEEEEEEccccCcCCCCcccceeeEEecHHHhh----c-----cccccCchHHHHHHHHHh
Confidence 55555554421 14455667666432 255667899999999999991 2 145678888888888865
No 20
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.78 E-value=3e-18 Score=135.28 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=86.3
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
...++++++++.++++||+||+.. .++|.|++| ||++++||+ +.+||+||++||||+.+. ...+.
T Consensus 17 ~~~~v~~vi~~~~~~vLl~~r~~~--~~~g~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~---~~~~~ 81 (160)
T 1rya_A 17 PLVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLP---ITAGQ 81 (160)
T ss_dssp CEEEEEEEEECTTSCEEEEEECSS--SSTTSEECC-EEECCTTCC---------HHHHHHHHHHHHHSSCCC---GGGSE
T ss_pred cEEEEEEEEEcCCCEEEEEeccCC--CCCCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCCCC---cccce
Confidence 346788888888899999999853 368999999 999999999 799999999999999964 11234
Q ss_pred eeeEEEEEcCCC---CCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHH
Q 027303 123 PLGRILYKAPSD---GKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 123 ~l~~~~y~~~~~---~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
+++.+.+..+.. .....+...++|.+... ..+..+++|+.+++|++++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 138 (160)
T 1rya_A 82 FYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLAS 138 (160)
T ss_dssp EEEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHC
T ss_pred EEEEEeEEEcccccCCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhc
Confidence 566554433321 11112455566766643 344556778999999999999874
No 21
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.78 E-value=1.9e-18 Score=135.43 Aligned_cols=128 Identities=12% Similarity=0.130 Sum_probs=91.4
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.++.+++ +.+|++||+||+.... +|.|++| ||++++||+ +.+||+||++||||+.+.. ...+
T Consensus 9 ~~v~~ii-~~~~~vLl~~r~~~~~--~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~-----~~~~ 70 (153)
T 2b0v_A 9 VTVAAVI-EQDDKYLLVEEIPRGT--AIKLNQP-AGHLEPGES---------IIQACSREVLEETGHSFLP-----EVLT 70 (153)
T ss_dssp EEEEEEC-EETTEEEEEEECSSSS--CCEEECS-EEECCTTSC---------HHHHHHHHHHHHHSEEEEE-----EEEE
T ss_pred EEEEEEE-eeCCEEEEEEEcCCCC--CCeEECC-CcCcCCCCC---------HHHHHHHHHHHhhCcEecc-----ceEE
Confidence 3444444 4568999999976543 8999999 999999999 8999999999999999763 3445
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEecC--ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 201 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 201 (225)
+.+.|..+.. ..+.+.++|.+... .....+++|+.+++|++++++.++.. ..+.|.++.++.+|+.
T Consensus 71 ~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~--------~~~~~~~~~~l~~~~~ 138 (153)
T 2b0v_A 71 GIYHWTCASN---GTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQA--------MHRTPLVMQCIEDYHA 138 (153)
T ss_dssp EEEEEEETTT---TEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGG--------GBSSTHHHHHHHHHHT
T ss_pred EEEEEeCCCC---CcEEEEEEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhhhhc--------ccCcHHHHHHHHHHHh
Confidence 5555554431 11334455655532 12234567899999999999999721 2578888888888854
No 22
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.78 E-value=2.9e-18 Score=132.25 Aligned_cols=126 Identities=17% Similarity=0.094 Sum_probs=89.9
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
|+.+++++++.+|++||++|+..+ .++|.|++| ||+++.||+ +++||+||++||||+.+.. ...
T Consensus 8 ~~~~~~~ii~~~~~vLl~~r~~~~-~~~g~w~lP-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~-----~~~ 71 (140)
T 2rrk_A 8 MIEVVAAIIERDGKILLAQRPAQS-DQAGLWEFA-GGKVEPDES---------QRQALVRELREELGIEATV-----GEY 71 (140)
T ss_dssp EEEEEEEEEEETTEEEEEECCSSC-SCCCCEECC-EEECCTTSC---------HHHHHHHHHHHHSCEEEEC-----CEE
T ss_pred cceEEEEEEEcCCEEEEEEcCCCC-CCCCEEECC-ceecCCCCC---------HHHHHHHHHHHHHCCeeec-----ccE
Confidence 444455555677999999997554 579999999 999999999 7999999999999999763 234
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 202 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 202 (225)
++.+.+..+. .+...++|.+..... .++..|+.+++|++++++.++ .+.+..+.+++.++..
T Consensus 72 ~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~~~ 133 (140)
T 2rrk_A 72 VASHQREVSG-----RIIHLHAWHVPDFHG-TLQAHEHQALVWCSPEEALQY-----------PLAPADIPLLEAFMAL 133 (140)
T ss_dssp EEEEEEEETT-----EEEEEEEEEESEEEE-CCCCSSCSCEEEECHHHHTTS-----------CCCTTHHHHHHHHHHH
T ss_pred EEEEEEecCC-----cEEEEEEEEEEeeCC-CcCCCccceeEEeCHHHHhhC-----------CCChhHHHHHHHHHHH
Confidence 5555444321 133345565543211 234567889999999999764 4677777788777653
No 23
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.77 E-value=5.2e-18 Score=132.01 Aligned_cols=128 Identities=17% Similarity=0.122 Sum_probs=86.8
Q ss_pred CcceeEEEEEEEeC-CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303 41 NLLHRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 119 (225)
Q Consensus 41 ~~~h~~v~v~i~d~-~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~ 119 (225)
...|.++.+++++. +|++||+||+ +|.|++| ||++++||+ +.+||+||+.||||+.+..
T Consensus 15 ~~~~~~~~~vi~~~~~~~vLl~~r~------~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~---- 74 (148)
T 2azw_A 15 YQTRYAAYIIVSKPENNTMVLVQAP------NGAYFLP-GGEIEGTET---------KEEAIHREVLEELGISVEI---- 74 (148)
T ss_dssp CEECCEEEEECEEGGGTEEEEEECT------TSCEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE----
T ss_pred eeeeeEEEEEEECCCCCeEEEEEcC------CCCEeCC-CcccCCCCC---------HHHHHHHHHHHHhCCeeEe----
Confidence 34566777888875 6899999874 3899999 999999999 7999999999999999763
Q ss_pred ceeeeeEEE-EEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303 120 EFTPLGRIL-YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 198 (225)
Q Consensus 120 ~l~~l~~~~-y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~ 198 (225)
...++.+. +..+.......+...++|.+........+.+|+.+++|++++++.++ .+.+..+.++++
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~ 142 (148)
T 2azw_A 75 -GCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRL-----------LKRGSHRWAVEK 142 (148)
T ss_dssp -EEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHH-----------BSCHHHHHHHHH
T ss_pred -eeEEEEEEEEEcCCCCCcceEEEEEEEEEEcCcCCcCCCCceeeEEEeeHHHHHhh-----------hcchhHHHHHHH
Confidence 23344332 11111111111344566666543222234477889999999999987 355666677776
Q ss_pred HH
Q 027303 199 FL 200 (225)
Q Consensus 199 ~l 200 (225)
++
T Consensus 143 ~~ 144 (148)
T 2azw_A 143 WL 144 (148)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 24
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.77 E-value=4.2e-19 Score=140.49 Aligned_cols=117 Identities=13% Similarity=0.090 Sum_probs=79.9
Q ss_pred cCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303 39 SLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 118 (225)
Q Consensus 39 ~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~ 118 (225)
.....|.++++++++.+|++||++|+ +|.|.+| ||++++||+ +.+||+||++||||+.+..
T Consensus 16 ~~~~~~~~v~~ii~~~~~~vLL~~r~------~~~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~--- 76 (153)
T 3eds_A 16 HELIFXPSVAAVIKNEQGEILFQYPG------GEYWSLP-AGAIELGET---------PEEAVVREVWEETGLKVQV--- 76 (153)
T ss_dssp TSCEEEEEEEEEEBCTTCCEEEECC---------CBBCS-EEECCTTSC---------HHHHHHHHHHHHHCEEEEE---
T ss_pred CCcEEeeeEEEEEEcCCCeEEEEEcC------CCcEECC-ccccCCCCC---------HHHHHHHHHHHHHCcccee---
Confidence 46678999999999988999999887 6899999 999999999 8999999999999999763
Q ss_pred CceeeeeEE-----EEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHh
Q 027303 119 DEFTPLGRI-----LYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 119 ~~l~~l~~~-----~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
...++.+ .+..+. +...+...++|.+.. .+.+.++++|+.+++|++++++.++...
T Consensus 77 --~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~ 138 (153)
T 3eds_A 77 --KKQKGVFGGKEYRYTYSN--GDEVEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPPLALP 138 (153)
T ss_dssp --EEEEEEECSGGGEEECTT--SCEEEEEEEEEEEEEEEECCC-------CEEEECGGGCCCBSSC
T ss_pred --eeEEEEecccceeeecCC--CCeEEEEEEEEEEEecCCccccCCCcEEEEEEECHHHCchhccc
Confidence 2334433 233222 112233455666654 3445566789999999999999887544
No 25
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.77 E-value=3.5e-18 Score=135.91 Aligned_cols=127 Identities=18% Similarity=0.196 Sum_probs=92.2
Q ss_pred CCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303 40 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 119 (225)
Q Consensus 40 ~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~ 119 (225)
+...+.++.+++++ +|++||+||+... ++|.|++| ||+++.||+ +.+||+||++||||+.+...
T Consensus 25 ~~~~~~~v~~vi~~-~~~vLL~~r~~~~--~~~~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~--- 88 (157)
T 4dyw_A 25 TEQPRVGCGAAIVR-DGRILLIKRKRAP--EAGCWGLP-GGKVDWLEP---------VERAVCREIEEELGIALERA--- 88 (157)
T ss_dssp -CCCEEEEEEEEEE-TTEEEEEEECSSS--STTCEECC-EEECCTTCC---------HHHHHHHHHHHHHSCEEESC---
T ss_pred CCCceeEEEEEEEE-CCEEEEEEecCCC--CCCEEECC-cccCCCCCC---------HHHHHHHHHHHHHCcccccC---
Confidence 44567888888888 6999999998543 78999999 999999999 89999999999999998632
Q ss_pred ceeeeeEEEEEcCCCCCCcceEEEEEEEEec-Cccc-cCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 027303 120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD 197 (225)
Q Consensus 120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~-~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~ 197 (225)
..++.+.+..... ..+...++|.+.. .... ..+++|+.+++|++++++.+ .+.+..+.+++
T Consensus 89 --~~~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~------------~l~~~~~~~l~ 151 (157)
T 4dyw_A 89 --TLLCVVDHIDAAN---GEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQ------------PLTHATRIALE 151 (157)
T ss_dssp --EEEEEEEEEETTT---TEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCS------------SBCHHHHHHHH
T ss_pred --cEEEEEEeeccCC---CcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHccc------------ccCHHHHHHHH
Confidence 3455554443211 1234445666553 2222 33557899999999999854 46777777777
Q ss_pred HH
Q 027303 198 NF 199 (225)
Q Consensus 198 ~~ 199 (225)
.|
T Consensus 152 ~l 153 (157)
T 4dyw_A 152 QV 153 (157)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 26
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.76 E-value=3.4e-18 Score=134.21 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=76.4
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.++++++++.+|++||.+|.... ..++.|++| ||++++||+ +++||+||++||||+.+.. +.++
T Consensus 6 ~~v~vi~~~~~~~vLLv~~~r~~-~~~~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~-----~~~l 69 (145)
T 2w4e_A 6 RAVFILPVTAQGEAVLIRQFRYP-LRATITEIV-AGGVEKGED---------LGAAAARELLEEVGGAASE-----WVPL 69 (145)
T ss_dssp EEEEEEEEETTSEEEEEEEEETT-TTEEEEECE-EEECCTTCC---------HHHHHHHHHHHHHCEECSE-----EEEC
T ss_pred CEEEEEEEcCCCEEEEEEEEecC-CCCCEEEeC-CccCCCCCC---------HHHHHHHHHHHhhCCccCe-----EEEE
Confidence 57888888888999876543222 245799999 999999999 8999999999999999762 3444
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+.+ |..+ +.. ....++|.+.. .....++++|+.+++|++++++.+++..+
T Consensus 70 ~~~-~~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 121 (145)
T 2w4e_A 70 PGF-YPQP---SIS-GVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAG 121 (145)
T ss_dssp CCB-BSCT---TTC-CCEEEEEEEEEEEEC--------CEEEEEEEHHHHHHHHHHT
T ss_pred ecC-cCCC---Ccc-CceEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHHcC
Confidence 443 2211 111 23445555542 23344567899999999999999998875
No 27
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.76 E-value=9.1e-18 Score=133.03 Aligned_cols=113 Identities=23% Similarity=0.212 Sum_probs=73.6
Q ss_pred eEEEEEEE---------eCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCC
Q 027303 45 RAFSVFLF---------NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 115 (225)
Q Consensus 45 ~~v~v~i~---------d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~ 115 (225)
++++++++ |+++++||.||+.. +|.|.+| ||++++||| +.+||+||++||||+.+..
T Consensus 4 ra~G~iifr~~~~~~~~n~~~e~LL~~r~~~----~~~W~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~ 69 (155)
T 3u53_A 4 RACGLIIFRRCLIPKVDNNAIEFLLLQASDG----IHHWTPP-KGHVEPGED---------DLETALRETQEEAGIEAGQ 69 (155)
T ss_dssp CEEEEEEEEECCCSSSSSCSEEEEEEEESSS----SCCEECS-EEECCSSCC---------HHHHHHHHHHHHHCCCGGG
T ss_pred eEeEEEEEccccccceeCCCcEEEEEEecCC----CCCEECC-eeeccCCCC---------HHHHHHHHHHHHHCCcccc
Confidence 35566665 44568999999743 5889999 999999999 8999999999999999763
Q ss_pred CCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEec-Cccc-cCCccccccEEEeCHHHHHHHHH
Q 027303 116 VPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLR 177 (225)
Q Consensus 116 i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~-~~~~~Ev~~~~Wv~~eel~~~~~ 177 (225)
. ..++.+.+......... ....++|++.. +... ...++|+.+++|++++|+.+++.
T Consensus 70 ~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~ 127 (155)
T 3u53_A 70 L-----TIIEGFKRELNYVARNK-PKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQ 127 (155)
T ss_dssp E-----EEEEEEEEEEEEEETTE-EEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHHC
T ss_pred c-----eeeeeEeeeeecCCCcc-eeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHHHcC
Confidence 2 22332222211111111 22233333332 2222 22346899999999999988753
No 28
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.76 E-value=6.2e-18 Score=135.96 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=78.2
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.++++++++ +|++||.+|.... .++|.|++| ||++++||+ +++||+||++||||+ +.. +.++
T Consensus 35 ~~v~vii~~-~~~vLL~~~~r~~-~~~~~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl-~~~-----~~~l 96 (170)
T 1v8y_A 35 PAVAVIALR-EGRMLFVRQMRPA-VGLAPLEIP-AGLIEPGED---------PLEAARRELAEQTGL-SGD-----LTYL 96 (170)
T ss_dssp CEEEEEEEE-TTEEEEEECCBTT-TTBCCBBCS-EEECCTTCC---------HHHHHHHHHHHHHSE-EEE-----EEEE
T ss_pred CeEEEEEEE-CCEEEEEEEEeCC-CCCCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCC-CcC-----ceee
Confidence 478888888 8999998875433 578999999 999999999 899999999999999 652 4456
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+.+ +..+ +.. +...++|.+.. .....++++|+.+++|++++++.+++..+
T Consensus 97 ~~~-~~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 148 (170)
T 1v8y_A 97 FSY-FVSP---GFT-DEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRG 148 (170)
T ss_dssp EEE-ESCT---TTB-CCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTT
T ss_pred EEE-ecCC---Ccc-ccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHHHHHCC
Confidence 554 2222 111 33455565543 23344567889999999999999999886
No 29
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.76 E-value=3.1e-18 Score=133.77 Aligned_cols=124 Identities=17% Similarity=0.100 Sum_probs=88.9
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
+..+++++++.+|++||++|+.. ..++|.|++| ||++++||+ +.+||.||+.||||+.+... ..
T Consensus 21 ~~~~~~~i~~~~~~vLl~~r~~~-~~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~-----~~ 84 (153)
T 3ees_A 21 WIPVVAGFLRKDGKILVGQRPEN-NSLAGQWEFP-GGKIENGET---------PEEALARELNEELGIEAEVG-----EL 84 (153)
T ss_dssp EEEEEEEEEEETTEEEEEECCTT-STTTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHSCEEECC-----CE
T ss_pred eEEEEEEEEEECCEEEEEEeCCC-CCCCCeEECC-ceeeCCCCC---------HHHHHHHHHHHHHCCccccC-----ce
Confidence 55666666677799999999865 3589999998 999999999 89999999999999998743 23
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 200 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l 200 (225)
++.+.+..+. .+...++|.+.... ..++.+|..+++|++++++.++ .+.+..+.+++.++
T Consensus 85 ~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~ 144 (153)
T 3ees_A 85 KLACTHSYGD-----VGILILFYEILYWK-GEPRAKHHMMLEWIHPEELKHR-----------NIPEANRKILHKIY 144 (153)
T ss_dssp EEEEEEEETT-----EEEEEEEEEECEEE-SCCCCSSSSEEEEECGGGGGGS-----------CCCHHHHTTHHHHH
T ss_pred EEEEEEecCC-----CeEEEEEEEEEECC-CCcCCCccceEEEecHHHhhhC-----------CCCcchHHHHHHHH
Confidence 4444444321 12234555554321 1245678899999999999764 46676666666664
No 30
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.75 E-value=6.1e-18 Score=137.25 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=86.4
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.++++++++.+|++||++|... ..++|.|++| ||++++||+ +++||+||++||||+.+.. +..+
T Consensus 42 ~~v~v~i~~~~~~vLL~~r~~~-~~~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~~l 105 (182)
T 2yvp_A 42 AASFVLPVTERGTALLVRQYRH-PTGKFLLEVP-AGKVDEGET---------PEAAARRELREEVGAEAET-----LIPL 105 (182)
T ss_dssp EEEEEEEBCTTSEEEEEEEEEG-GGTEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCEECSC-----EEEC
T ss_pred CEEEEEEEcCCCEEEEEEeccC-CCCCcEEEec-cccCCCCcC---------HHHHHHHHHHHHhCCCccc-----EEEE
Confidence 5788888888899999988744 3468999999 999999999 8999999999999999763 3445
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEec---CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~---~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+.+. .. .+.. +..+++|.+.. ......+++|+.+++|++++++.+++..+
T Consensus 106 ~~~~-~~---~~~~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 158 (182)
T 2yvp_A 106 PSFH-PQ---PSFT-AVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKG 158 (182)
T ss_dssp CCBC-SC---TTTB-CCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTT
T ss_pred EEEe-CC---CCcc-ccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence 4431 11 1111 34556676653 23344577899999999999999999875
No 31
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.75 E-value=7.1e-18 Score=132.80 Aligned_cols=126 Identities=10% Similarity=0.082 Sum_probs=86.2
Q ss_pred CcceeEEEEEEEeCCCe----EEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCC
Q 027303 41 NLLHRAFSVFLFNSKYE----LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 116 (225)
Q Consensus 41 ~~~h~~v~v~i~d~~g~----vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i 116 (225)
...|.++.+++++ +++ +|+++|+... ++| |.+| ||++++||+ +.+||+||++||||+.+..
T Consensus 5 ~~~~~~~~~ii~~-~~~~~~~vLl~~r~~~~--~~g-w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~- 69 (155)
T 2b06_A 5 QLTILTNICLIED-LETQRVVMQYRAPENNR--WSG-YAFP-GGHVENDEA---------FAESVIREIYEETGLTIQN- 69 (155)
T ss_dssp GCEEEEEEEEEEE-TTTTEEEEEEEC-------CCE-EECC-CCBCCTTSC---------HHHHHHHHHHHHHSEEEES-
T ss_pred cCcEEEEEEEEEE-CCCCeEEEEEEECCCCC--CCC-Eecc-ceecCCCCC---------HHHHHHHHHHHHhCccccC-
Confidence 3467788888877 466 9999887654 788 9998 999999999 8999999999999999863
Q ss_pred CCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHH
Q 027303 117 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV 196 (225)
Q Consensus 117 ~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~ 196 (225)
...++.+.+.... + .+...++|.+.... ..++..|..+++|++++++.++ .+.+..+.++
T Consensus 70 ----~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l 129 (155)
T 2b06_A 70 ----PQLVGIKNWPLDT--G--GRYIVICYKATEFS-GTLQSSEEGEVSWVQKDQIPNL-----------NLAYDMLPLM 129 (155)
T ss_dssp ----CEEEEEEEEECTT--S--CEEEEEEEEECEEE-ECCCCBTTBEEEEEEGGGGGGS-----------CBCTTHHHHH
T ss_pred ----CcEEEEEeeccCC--C--ceEEEEEEEEEecC-CCCCCCcceeeEEeeHHHhhhC-----------CCChhHHHHH
Confidence 2345555444321 1 13445566554321 1234467899999999999775 3556677777
Q ss_pred HHHHH
Q 027303 197 DNFLF 201 (225)
Q Consensus 197 ~~~l~ 201 (225)
+.++.
T Consensus 130 ~~~~~ 134 (155)
T 2b06_A 130 EMMEA 134 (155)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 76643
No 32
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.75 E-value=1.3e-17 Score=137.44 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=76.7
Q ss_pred CCcceeEEEEEEEeCCC-eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCC-CCCCC
Q 027303 40 LNLLHRAFSVFLFNSKY-ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIC-AEDVP 117 (225)
Q Consensus 40 ~~~~h~~v~v~i~d~~g-~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~-~~~i~ 117 (225)
....|.++++++++.++ ++||++|. .+|.|.+| ||++++||+ +.+||+||++||||+. +..+.
T Consensus 41 ~~~~h~~~~~vv~~~~~~~vLL~~r~-----~~g~w~lP-gG~ve~gEs---------~~eaa~REl~EEtGl~~~~~~~ 105 (197)
T 3fcm_A 41 NTIAHLTSSAFAVNKERNKFLMIHHN-----IYNSWAWT-GGHSDNEKD---------QLKVAIKELKEETGVKNPTPLL 105 (197)
T ss_dssp CSSEEEEEEEEEECTTSCEEEEEEET-----TTTEEECE-EEECTTCCB---------HHHHHHHHHHHHHCCSSCEESC
T ss_pred CCCccEEEEEEEEECCCCEEEEEEec-----CCCCEECC-ccccCCCCC---------HHHHHHHHHHHHHCCCcccccC
Confidence 45689999999999876 99999886 35899999 999999999 8999999999999998 33211
Q ss_pred CCceeeeeEEEEEcCCC--CCC---cceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHH
Q 027303 118 VDEFTPLGRILYKAPSD--GKW---GEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELL 176 (225)
Q Consensus 118 ~~~l~~l~~~~y~~~~~--~~~---~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~ 176 (225)
. .+..+..+ ..+.. .+. ....+..+|++.. ...+.++++|+.+++|++++++.+++
T Consensus 106 ~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 168 (197)
T 3fcm_A 106 D-KAFALDVL--TVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYC 168 (197)
T ss_dssp S-SCSEEEEE--EECCEEETTEEECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHHC
T ss_pred C-CceEEEEe--eecCccccCcccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhhc
Confidence 0 11111111 11110 000 0011223344443 23456677899999999999999884
No 33
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.74 E-value=1.1e-16 Score=125.29 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=83.9
Q ss_pred EEEEEEE---eCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 46 AFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 46 ~v~v~i~---d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
++.++++ +.++++||++|+. +|.|.+| ||++++||+ +.+||+||++||||+.+... ..
T Consensus 7 ~v~vvi~~~~~~~~~vLl~~r~~-----~g~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~----~~ 67 (149)
T 3son_A 7 QVLVIPFIKTEANYQFGVLHRTD-----ADVWQFV-AGGGEDEEA---------ISETAKRESIEELNLDVDVK----MY 67 (149)
T ss_dssp EEEEEEEEECSSSEEEEEEEESS-----SSCEECE-EEECCTTCC---------HHHHHHHHHHHHHTCCSCCC----EE
T ss_pred EEEEEEEEecCCCeEEEEEEEcC-----CCCEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCCcccc----eE
Confidence 4445554 5567999999974 3899999 999999999 89999999999999998731 11
Q ss_pred eeeEE-EEEc---CCCCCCcceEEEEEEEEecC---ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHH
Q 027303 123 PLGRI-LYKA---PSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV 195 (225)
Q Consensus 123 ~l~~~-~y~~---~~~~~~~e~~~~~v~~~~~~---~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~ 195 (225)
.+..+ .+.. ...+. .+...++|.+... +.+.+ ++|+.+++|++++++.++ .+.|..+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~-----------~~~~~~~~~ 133 (149)
T 3son_A 68 SLDSHASIPNFHFSFNKP--YVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQL-----------LEWDSNKTA 133 (149)
T ss_dssp EEEEEEEEEGGGTCSSSC--SEEEEEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHH-----------CCCHHHHHH
T ss_pred EEEeeecccceeeccCCc--eEeEEEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHH-----------hcCHHHHHH
Confidence 12111 1111 11111 1344466766653 34454 488999999999999987 455777777
Q ss_pred HHHHHH
Q 027303 196 VDNFLF 201 (225)
Q Consensus 196 ~~~~l~ 201 (225)
+..+..
T Consensus 134 l~~~~~ 139 (149)
T 3son_A 134 LYELNE 139 (149)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777643
No 34
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.74 E-value=3.8e-18 Score=134.89 Aligned_cols=119 Identities=23% Similarity=0.333 Sum_probs=81.5
Q ss_pred CCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303 40 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 119 (225)
Q Consensus 40 ~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~ 119 (225)
++.+|.++++++++.+|++||+||+. +||.|++| ||++++||+ +++||+||++||||+.+..+
T Consensus 10 ~~~~~~~v~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~--- 72 (165)
T 1f3y_A 10 PEGYRRNVGICLMNNDKKIFAASRLD----IPDAWQMP-QGGIDEGED---------PRNAAIRELREETGVTSAEV--- 72 (165)
T ss_dssp CSSCCCEEEEEEECTTSCEEEEEETT----EEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCSEEE---
T ss_pred ccceeeeEEEEEECCCCcEEEEecCC----CCCcEECC-eeccCCCCC---------HHHHHHHHHHHhhCCChhhh---
Confidence 56789999999999889999999972 46999999 899999999 89999999999999986421
Q ss_pred ceeeeeE--EEEEcCC----------CCCCcceEEEEEEEEecC---ccccC-----CccccccEEEeCHHHHHHHHHh
Q 027303 120 EFTPLGR--ILYKAPS----------DGKWGEHELDYLLFIVRD---VSVNP-----NPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 120 ~l~~l~~--~~y~~~~----------~~~~~e~~~~~v~~~~~~---~~~~~-----~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
..... +.|..+. ...+. ....++|.+... ..+.+ +++|+.+++|++++++.+++..
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 148 (165)
T 1f3y_A 73 --IAEVPYWLTYDFPPKVREKLNIQWGSDWK-GQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVE 148 (165)
T ss_dssp --EEECSSCCBCCCCHHHHHHHGGGSCSSCC-SCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCG
T ss_pred --hcccccceeeecCcccccccccccccccc-CceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhh
Confidence 11100 1111110 00111 112344444432 22333 3578999999999999998533
No 35
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.74 E-value=2.4e-18 Score=145.12 Aligned_cols=144 Identities=12% Similarity=0.110 Sum_probs=88.7
Q ss_pred cCCcceeEEEEEEEeCCCeEEEeeecCCCC--CCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCC
Q 027303 39 SLNLLHRAFSVFLFNSKYELLLQQRSGTKV--TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 116 (225)
Q Consensus 39 ~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~--~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i 116 (225)
..+.++..+..+++..+|++|+++|+..+. .++|.|++.+|||+++||+. ++.+++++||+||++||||+.+.
T Consensus 62 ~d~~~~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~---~p~EtleeAa~REl~EEtGl~v~-- 136 (211)
T 3e57_A 62 YDETTKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGA---TPREAFLKGLEREVNEEVDVSLR-- 136 (211)
T ss_dssp TCTTEEEEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCS---SHHHHHHHHHHHHHHHHEEEEEE--
T ss_pred cCCcccceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCC---CchhhHHHHHHHHHHHHhCCeee--
Confidence 456677777666666689999999986542 36799999349999999981 01123699999999999999865
Q ss_pred CCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHH
Q 027303 117 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV 196 (225)
Q Consensus 117 ~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~ 196 (225)
.+.+++.+.+.... .....+.++|.+... ...+.++|..+++|+++++|.++...- ...+|.+..++
T Consensus 137 ---~~~~ig~~~~~~~~---~~~~~l~~~f~~~~~-~g~~~~~E~~~~~W~~~~eL~~~~~~l------e~wS~lvl~~l 203 (211)
T 3e57_A 137 ---ELEFLGLINSSTTE---VSRVHLGALFLGRGK-FFSVKEKDLFEWELIKLEELEKFSGVM------EGWSKISAAVL 203 (211)
T ss_dssp ---EEEEEEEEECCSSH---HHHTEEEEEEEEEEE-EEEESCTTTCEEEEEEHHHHHHHGGGC------CHHHHHHHHHH
T ss_pred ---ccEEEEEEeccCCC---CCeEEEEEEEEEEeC-CceeCCCCeEEEEEEEHHHHHHhHhhc------cchhHHHHHHH
Confidence 34566665442110 011223345655532 334456778899999999999975441 13455555556
Q ss_pred HHHH
Q 027303 197 DNFL 200 (225)
Q Consensus 197 ~~~l 200 (225)
++|+
T Consensus 204 ~~~~ 207 (211)
T 3e57_A 204 LNLF 207 (211)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 5553
No 36
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.73 E-value=2.2e-17 Score=134.11 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=90.7
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
.++++++++++.+|++||++|... .++|.|.+| ||++++||+ +++||+||++||||+.+.. +.
T Consensus 23 ~~~~~~~~vi~~~~~vLL~~r~~~--~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~ 85 (176)
T 3q93_A 23 ASRLYTLVLVLQPQRVLLGMKKRG--FGAGRWNGF-GGKVQEGET---------IEDGARRELQEESGLTVDA-----LH 85 (176)
T ss_dssp CEEEEEEEEEECSSEEEEEEECSS--TTTTSEECE-EEECCTTSC---------HHHHHHHHHHHHHSCEESC-----CE
T ss_pred CCcEEEEEEEEeCCEEEEEEEcCC--CCCCeEECc-eecCCCCCC---------HHHHHHHHHHHHHCCccee-----eE
Confidence 456777777777899999998643 378999999 999999999 8999999999999999863 35
Q ss_pred eeeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303 123 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 201 (225)
Q Consensus 123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 201 (225)
+++.+.+..+... .+...++|.+.. .+. +.+.|..+++|++++++.++ .+.|..+.+++.++.
T Consensus 86 ~l~~~~~~~~~~~---~~~~~~~f~~~~~~~~--~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~~ 149 (176)
T 3q93_A 86 KVGQIVFEFVGEP---ELMDVHVFCTDSIQGT--PVESDEMRPCWFQLDQIPFK-----------DMWPDDSYWFPLLLQ 149 (176)
T ss_dssp EEEEEEEEETTCS---CEEEEEEEEESCEESC--CCCCSSEEEEEEETTCCCGG-----------GBCTTHHHHHHHHHT
T ss_pred EEEEEEEEcCCCC---cEEEEEEEEEECCCCC--cCCCcceeeEEeeHHHcccc-----------ccCcchHHHHHHHHc
Confidence 5676665544221 134456666653 222 33456778899999999765 355555666666643
No 37
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.73 E-value=2.6e-17 Score=130.09 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=88.6
Q ss_pred chhhcccCCcceeEEEEEEEeC---CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHH-HHHHHHHHhH
Q 027303 33 LMEKIESLNLLHRAFSVFLFNS---KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVR-NAAQRKLLDE 108 (225)
Q Consensus 33 ~~~~~~~~~~~h~~v~v~i~d~---~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~-eaa~REl~EE 108 (225)
|+++.++......++.++|.+. +|++||+||+.. ..++|+|++| ||+++.||+ +. +||+||++||
T Consensus 8 Pvk~~k~~~~~~~~~~~vi~~~~~~~~~vLl~~R~~~-~~~~g~w~~P-gG~~e~gE~---------~~~~a~~REl~EE 76 (155)
T 1x51_A 8 PRKASRKPPREESSATCVLEQPGALGAQILLVQRPNS-GLLAGLWEFP-SVTWEPSEQ---------LQRKALLQELQRW 76 (155)
T ss_dssp TTSSSCSCTTEEEEEEEEEEEECSSSEEEEEEECCCC-STTCSCEECC-EEECCSSHH---------HHHHHHHHHHHHH
T ss_pred CCcCCCCCCCeEEEEEEEEEecCCCCCEEEEEECCCC-CCCCceecCC-ccccCCCCC---------HHHHHHHHHHHHH
Confidence 4444433322333444455554 479999999754 4689999999 999999999 75 9999999999
Q ss_pred hC-CCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcc
Q 027303 109 LG-ICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLK 187 (225)
Q Consensus 109 tG-l~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~ 187 (225)
|| +.+.. +..++.+.+.... .+...++|.+..... .+...|..+++|++++++.++ .
T Consensus 77 ~g~l~~~~-----~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~ 134 (155)
T 1x51_A 77 AGPLPATH-----LRHLGEVVHTFSH-----IKLTYQVYGLALEGQ-TPVTTVPPGARWLTQEEFHTA-----------A 134 (155)
T ss_dssp SCCCCSTT-----CEECCCBCCBCSS-----CEEEEEEEEEECSSC-CCCCCCCTTEEEEEHHHHHHS-----------C
T ss_pred hCCcceee-----eeecceEEEecCC-----ccEEEEEEEEEEcCC-CCCCCCCCccEEccHHHhhhc-----------C
Confidence 99 77652 2233333222111 122335566654321 123456789999999999874 5
Q ss_pred cChhHHHHHHHHHH
Q 027303 188 LSPWFRLVVDNFLF 201 (225)
Q Consensus 188 ~~p~~~~~~~~~l~ 201 (225)
+++..+.+++.++.
T Consensus 135 ~~~~~~~~l~~~~~ 148 (155)
T 1x51_A 135 VSTAMKKVFRVYQG 148 (155)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 77878888877754
No 38
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.72 E-value=3.4e-17 Score=129.91 Aligned_cols=129 Identities=18% Similarity=0.193 Sum_probs=89.1
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
.|.++++++++ +|++||+||+. +|.|.+| ||++++||+ +.+||+||++||||+.+.........
T Consensus 5 ~~~~v~~vi~~-~~~vLL~~r~~-----~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~~~~ 68 (159)
T 3f6a_A 5 RHFTVSVFIVC-KDKVLLHLHKK-----AKKMLPL-GGHIEVNEL---------PEEACIREAKEEAGLNVTLYNPIDIN 68 (159)
T ss_dssp SCEEEEEEEEE-TTEEEEEECSS-----SCCEECE-EEECCTTCC---------HHHHHHHHHHHHHCCCCEECCCCCHH
T ss_pred ceEEEEEEEEE-CCEEEEEEcCC-----CCeEECC-ccCccCCCC---------HHHHHHHHHHHHhCCCceeccccccc
Confidence 57888999988 68999999863 5899999 999999999 89999999999999998743321000
Q ss_pred -----------e----eeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCc
Q 027303 123 -----------P----LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGL 186 (225)
Q Consensus 123 -----------~----l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~ 186 (225)
. .....+..+ . ....+.++|.+.. .+.+.++++|+.+++|++++++.++ .
T Consensus 69 ~~~~~~~~~~~~~~~p~~~~~~~~~--~--~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~----------~ 134 (159)
T 3f6a_A 69 LKKSCDLSGEKLLINPIHTILGDVS--P--NHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNA----------H 134 (159)
T ss_dssp HHHHHHHTTCEEECCCSEEEEECSS--S--SSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTC----------S
T ss_pred ccccccccccccccCccccccccCC--C--CceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhC----------c
Confidence 0 000111111 0 1123445666664 4455566789999999999999765 1
Q ss_pred ccChhHHHHHHHHHH
Q 027303 187 KLSPWFRLVVDNFLF 201 (225)
Q Consensus 187 ~~~p~~~~~~~~~l~ 201 (225)
.+.+..+.+.+.++.
T Consensus 135 ~~~~~~~~l~~~~~~ 149 (159)
T 3f6a_A 135 NIQENILVMATEALD 149 (159)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHH
Confidence 356666666666643
No 39
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.72 E-value=1.9e-17 Score=135.79 Aligned_cols=115 Identities=16% Similarity=-0.032 Sum_probs=77.5
Q ss_pred CCcceeEEEEEEEeCCC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCC
Q 027303 40 LNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP 117 (225)
Q Consensus 40 ~~~~h~~v~v~i~d~~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~ 117 (225)
++..+.++ +++++.+| ++||++|+..+..++|.|++| ||++++||+ +++||+||++||||+.+..
T Consensus 31 ~~~~~~~~-~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-- 97 (194)
T 1nqz_A 31 PHYRRAAV-LVALTREADPRVLLTVRSSELPTHKGQIAFP-GGSLDAGET---------PTQAALREAQEEVALDPAA-- 97 (194)
T ss_dssp --CEEEEE-EEEEESSSSCBBCEEEEC------CCCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGG--
T ss_pred CCCceEEE-EEEEecCCCeEEEEEEecCCCCCCCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCCccc--
Confidence 33444444 44447777 899999987656789999998 999999999 8999999999999999763
Q ss_pred CCceeeeeEEEEEcCCCCCCcceEEEEEEEEecC--cc-ccCCccccccEEEeCHHHH-HHH
Q 027303 118 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VS-VNPNPDEVAEYKYVNREQL-KEL 175 (225)
Q Consensus 118 ~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~--~~-~~~~~~Ev~~~~Wv~~eel-~~~ 175 (225)
+..++.+.+.... . ....++|.+... .. ...+++|+.+++|++++++ .+.
T Consensus 98 ---~~~l~~~~~~~~~----~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 151 (194)
T 1nqz_A 98 ---VTLLGELDDVFTP----V-GFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVP 151 (194)
T ss_dssp ---CEEEEECCCEEET----T-TEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSC
T ss_pred ---eEEEEEccCccCC----C-CeEEEEEEEEecCCccccCCCccceeEEEEEEHHHhccCC
Confidence 3345544322211 1 234456665543 23 4567789999999999999 654
No 40
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.72 E-value=6.3e-18 Score=133.43 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=80.3
Q ss_pred cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303 42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 121 (225)
Q Consensus 42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l 121 (225)
..+.++++++++.+|++||+||+.. .++|.|++| ||+++.||+ +.+||+||++||||+.+.. .
T Consensus 18 ~~~~~v~~~i~~~~~~vLl~~r~~~--~~~~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----~ 80 (156)
T 3gg6_A 18 NVCYVVLAVFLSEQDEVLLIQEAKR--ECRGSWYLP-AGRMEPGET---------IVEALQREVKEEAGLHCEP-----E 80 (156)
T ss_dssp TCEEEEEEECBCTTSEEEEEECCCT--TSTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCEEEEE-----E
T ss_pred ceEEEEEEEEEeCCCEEEEEEecCC--CCCCEEECC-eeeccCCCC---------HHHHHHHHHHHhhCceeEe-----e
Confidence 4567778888888899999998743 378999999 999999999 8999999999999999763 2
Q ss_pred eeeeEEEEEcCCCCCCcceEEEEEEEEec-Cccc---cCCccccccEEEeCHHHHHHHH
Q 027303 122 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSV---NPNPDEVAEYKYVNREQLKELL 176 (225)
Q Consensus 122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~---~~~~~Ev~~~~Wv~~eel~~~~ 176 (225)
..++.+ ... . +.+.++|.+.. .... ..+++|+.+++|++++++.+++
T Consensus 81 ~~~~~~--~~~--~----~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 131 (156)
T 3gg6_A 81 TLLSVE--ERG--P----SWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPL 131 (156)
T ss_dssp EEEEEE--ESS--T----TEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSB
T ss_pred eEEEEE--cCC--C----CEEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccc
Confidence 334433 211 1 23445555543 2222 2345789999999999997653
No 41
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.72 E-value=1.5e-17 Score=135.91 Aligned_cols=136 Identities=17% Similarity=0.127 Sum_probs=88.6
Q ss_pred CcceeEEEEEEEe--C-----CCeEEEeeecC-----CCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhH
Q 027303 41 NLLHRAFSVFLFN--S-----KYELLLQQRSG-----TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDE 108 (225)
Q Consensus 41 ~~~h~~v~v~i~d--~-----~g~vLL~rRs~-----~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EE 108 (225)
...|.+|.++++. . +++|||++|+. .+..++|.|.+| ||++++||+ +++||+||++||
T Consensus 24 ~p~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lP-GG~ve~gEs---------~~~aa~REl~EE 93 (187)
T 3i9x_A 24 TPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVP-GGFVDENES---------AEQAAERELEEE 93 (187)
T ss_dssp CCSEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECS-EEECCTTSC---------HHHHHHHHHHHH
T ss_pred CcccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECC-ceeCCCCCC---------HHHHHHHHHHHH
Confidence 3345666666543 2 36899999964 344678999999 999999999 899999999999
Q ss_pred hCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCc---cccCCccccccEEEeCHHHHHHHHHhccCCCCC
Q 027303 109 LGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV---SVNPNPDEVAEYKYVNREQLKELLRKADAGEEG 185 (225)
Q Consensus 109 tGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~---~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~ 185 (225)
||+.+.. +..++.+ ..+...... +.+..+|++.... ....+.+|+.+++|++++++.++
T Consensus 94 tGl~~~~-----~~~l~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~---------- 155 (187)
T 3i9x_A 94 TSLTDIP-----LIPFGVF--DKPGRDPRG-WIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALEL---------- 155 (187)
T ss_dssp HCCCSCC-----CEEEEEE--CCTTSSTTS-SEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTS----------
T ss_pred HCCCCcc-----eEEEEEE--cCCccCCCC-CEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccC----------
Confidence 9998763 3445554 322211111 2233344333221 12234578899999999999754
Q ss_pred cccChhHHHHHHHHHHHHHh
Q 027303 186 LKLSPWFRLVVDNFLFKWWD 205 (225)
Q Consensus 186 ~~~~p~~~~~~~~~l~~~~~ 205 (225)
.+.+..+.+++.++.....
T Consensus 156 -~l~~~~~~il~~a~~~l~~ 174 (187)
T 3i9x_A 156 -PLAFDHLDMLKKAFSAITE 174 (187)
T ss_dssp -CBSTTHHHHHHHHHHHHHH
T ss_pred -CCCccHHHHHHHHHHHHHh
Confidence 3555666777776444433
No 42
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.72 E-value=1.5e-18 Score=131.86 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=82.1
Q ss_pred EEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEE
Q 027303 48 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 127 (225)
Q Consensus 48 ~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~ 127 (225)
.+++++.+|++||+||+..+ .++|.|++| ||++++||+ +.+||+||++||||+.+... ..++.+
T Consensus 8 ~~ii~~~~~~vLl~~r~~~~-~~~g~w~~P-gG~~e~gE~---------~~~aa~RE~~EE~G~~~~~~-----~~~~~~ 71 (129)
T 1mut_A 8 VGIIRNENNEIFITRRAADA-HMANKLEFP-GGKIEMGET---------PEQAVVRELQEEVGITPQHF-----SLFEKL 71 (129)
T ss_dssp CEECEETTTEEEEEECSSCC-SSSCCEECC-CCCSSSCSS---------TTHHHHHHHHTTTCCSSCEE-----CCCCCC
T ss_pred EEEEEecCCEEEEEEeCCCC-CCCCeEECC-ccCcCCCCC---------HHHHHHHHHHHHhCCccccc-----eEEEEE
Confidence 33455777999999998654 689999998 999999999 79999999999999997632 223333
Q ss_pred EEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303 128 LYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 199 (225)
Q Consensus 128 ~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (225)
.+..+. .+...++|.+..... .++.+|+.+++|++++++.++ .+.|..+.+++.+
T Consensus 72 ~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~l 126 (129)
T 1mut_A 72 EYEFPD-----RHITLWFWLVERWEG-EPWGKEGQPGEWMSLVGLNAD-----------DFPPANEPVIAKL 126 (129)
T ss_dssp BCCCSS-----CEEECCCEEEEECSS-CCCCCSSCCCEEEESSSCCTT-----------TSCTTCHHHHHHH
T ss_pred EEecCC-----ceEEEEEEEEEccCC-ccCCcccceeEEeCHHHcccc-----------cCCchhHHHHHHH
Confidence 222111 122334555543221 234568889999999998764 4666666666654
No 43
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.1e-17 Score=126.65 Aligned_cols=109 Identities=14% Similarity=0.219 Sum_probs=75.7
Q ss_pred eEEEEEEEeCC-CeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 45 RAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 45 ~~v~v~i~d~~-g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
+++++++++.+ +++||+||.. +|.|++| ||++++||+ +.+||+||++||||+.+..+ ..
T Consensus 5 ~~~~~~i~~~~~~~vLl~~r~~-----~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~ 64 (146)
T 2jvb_A 5 PVRGAAIFNENLSKILLVQGTE-----SDSWSFP-RGKISKDEN---------DIDCCIREVKEEIGFDLTDY-----ID 64 (146)
T ss_dssp CCEEEEEBCTTSSEEEEECCSS-----SSCCBCC-EECCCSSSC---------HHHHHHHHHHHHTSCCCSSS-----SC
T ss_pred EEEEEEEEeCCCCEEEEEEEcC-----CCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCCchHh-----cc
Confidence 45677777765 8999998763 5899998 999999999 89999999999999998642 12
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEec-C--ccccC-CccccccEEEeCHHHHHHHHHhc
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVR-D--VSVNP-NPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~--~~~~~-~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+..+...... ....++|++.. . ....+ +++|+.+++|++++++.+++...
T Consensus 65 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 118 (146)
T 2jvb_A 65 DNQFIERNIQ------GKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKS 118 (146)
T ss_dssp SSCEEEEEET------TEEEEEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCS
T ss_pred cccccccccC------CceEEEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhccc
Confidence 2233222111 11233444332 1 12222 36789999999999999987654
No 44
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.71 E-value=1.9e-16 Score=132.36 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=81.1
Q ss_pred eeEEEEEEEe-CCCeEEEeeecCCCC----CCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303 44 HRAFSVFLFN-SKYELLLQQRSGTKV----TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 118 (225)
Q Consensus 44 h~~v~v~i~d-~~g~vLL~rRs~~k~----~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~ 118 (225)
+.+|++++++ .++++||.++..... ..++.|++| ||++++||+ +++||+||++||||+.+.
T Consensus 57 ~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welP-gG~ve~gE~---------~~~aA~REl~EEtGl~~~---- 122 (209)
T 1g0s_A 57 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVK---- 122 (209)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECE-EEECCTTCC---------HHHHHHHHHHHHHCCCCC----
T ss_pred CCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeC-cccCCCCcC---------HHHHHHHHHHHHcCcccC----
Confidence 3678888888 468999865432211 126789998 999999999 799999999999999976
Q ss_pred CceeeeeEEEEEcCCCCCCcceEEEEEEEEecCc----c--ccCCccccccEEEeCHHHHHHHHHhc
Q 027303 119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV----S--VNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~----~--~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
.+.+++.+ |..+ +.. .+.+++|++..+. . ...+++|..++.|+|++++.+++..+
T Consensus 123 -~~~~l~~~-~~~~---g~~-~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g 183 (209)
T 1g0s_A 123 -RTKPVLSF-LASP---GGT-SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG 183 (209)
T ss_dssp -CEEEEEEE-ESCT---TTB-CCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTT
T ss_pred -cEEEeEEE-ecCC---Ccc-CcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcC
Confidence 34566665 3332 222 3455667666421 1 23466788899999999999999886
No 45
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.70 E-value=1e-16 Score=128.82 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=81.4
Q ss_pred cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303 42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 121 (225)
Q Consensus 42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l 121 (225)
.+|.++++++++.+|++||++|+. +|.|++| ||++++||+ +.+||+||++||||+.+.. +
T Consensus 6 ~~~~~v~~~i~~~~~~vLl~~r~~-----~~~w~~p-~G~~e~gE~---------~~~aa~RE~~EE~G~~~~~-----~ 65 (164)
T 2kdv_A 6 GYRPNVGIVICNRQGQVMWARRFG-----QHSWQFP-QGGINPGES---------AEQAMYRELFEEVGLSRKD-----V 65 (164)
T ss_dssp SEEEEEEEEEECTTSEEEEEEETT-----CCCEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCGGG-----E
T ss_pred CCCcEEEEEEEccCCEEEEEEEcC-----CCeEECC-eeecCCCCC---------HHHHHHHHHHHHHCCCccc-----e
Confidence 578899999999889999999873 6899999 999999999 8999999999999999763 2
Q ss_pred eeeeEE----EEEcCCCC------CCcceEEEEEEEEecC---ccccCC---ccccccEEEeCHHHHHHH
Q 027303 122 TPLGRI----LYKAPSDG------KWGEHELDYLLFIVRD---VSVNPN---PDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 122 ~~l~~~----~y~~~~~~------~~~e~~~~~v~~~~~~---~~~~~~---~~Ev~~~~Wv~~eel~~~ 175 (225)
..++.+ .|..+... ....+...++|.+... ..+.++ ..|+.+++|++++++.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~ 135 (164)
T 2kdv_A 66 RILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQ 135 (164)
T ss_dssp EEEEECSSCEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGG
T ss_pred EEEEEecceeEEecCcceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhh
Confidence 334432 34444311 0111234455665532 223332 358999999999987654
No 46
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.70 E-value=5.4e-17 Score=130.06 Aligned_cols=124 Identities=14% Similarity=0.129 Sum_probs=81.5
Q ss_pred CCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303 40 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 119 (225)
Q Consensus 40 ~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~ 119 (225)
....+..+++++++ +|++||+||... +|.|++| ||++++||+ +.+||+||++||||+.+..
T Consensus 19 ~~~~~~~v~~ii~~-~~~vLL~~r~~~----~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~---- 79 (171)
T 3id9_A 19 ENIMQVRVTGILIE-DEKVLLVKQKVA----NRDWSLP-GGRVENGET---------LEEAMIREMREETGLEVKI---- 79 (171)
T ss_dssp ---CEEEEEEEEEE-TTEEEEEECSST----TCCEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCEEE----
T ss_pred CCceEEEEEEEEEE-CCEEEEEEEECC----CCeEECC-CccCCCCCC---------HHHHHHHHHHHHHCCcccc----
Confidence 34566777777777 589999998752 7999999 999999999 8999999999999999752
Q ss_pred ceeeeeEEEEEcCCCCCCcceEEEEEEEEec-Cccc-----cCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHH
Q 027303 120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-----NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193 (225)
Q Consensus 120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~-----~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~ 193 (225)
...++.+.+. ... .+...++|.+.. .+.. .++++|+.+++|++++++.++ .+.|.++
T Consensus 80 -~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~-----------~~~~~~~ 142 (171)
T 3id9_A 80 -KKLLYVCDKP--DAS---PSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYY-----------GFSETFI 142 (171)
T ss_dssp -EEEEEEEEET--TSS---SCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGG-----------TCCTTCS
T ss_pred -ceEEEEEccc--CCC---CcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhC-----------CCCHHHH
Confidence 2233333332 211 122333344432 2222 235688999999999999876 3556666
Q ss_pred HHHHHH
Q 027303 194 LVVDNF 199 (225)
Q Consensus 194 ~~~~~~ 199 (225)
.++++.
T Consensus 143 ~~l~~~ 148 (171)
T 3id9_A 143 NLISGG 148 (171)
T ss_dssp HHHHHG
T ss_pred HHHHHh
Confidence 666665
No 47
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.70 E-value=6.9e-17 Score=132.73 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=86.2
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
+++.+++.+ +|++||++|. .+|.|.+| ||++++||+ +++||+||++||||+.+.. ...+
T Consensus 5 ~v~~~vi~~-~~~vLL~~r~-----~~g~W~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~~~ 63 (188)
T 3fk9_A 5 RVTNCIVVD-HDQVLLLQKP-----RRGWWVAP-GGKMEAGES---------ILETVKREYWEETGITVKN-----PELK 63 (188)
T ss_dssp EEEEEEEEE-TTEEEEEECT-----TTCCEECC-EEECCTTCC---------HHHHHHHHHHHHHSCEESS-----CEEE
T ss_pred EEEEEEEEE-CCEEEEEEeC-----CCCeEECC-eecccCCCC---------HHHHHHHHHHHHHCCCCCC-----ceEE
Confidence 566666666 5899999885 37999999 999999999 8999999999999999873 2345
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 202 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 202 (225)
+.+.+.....+....+...++|.+.. .+.+. ...|..+++|++++++.++ .+.+..+.+++.++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~f~a~~~~~~~~-~~~e~~~~~W~~~~el~~~-----------~l~~~~~~~l~~~l~~ 130 (188)
T 3fk9_A 64 GIFSMVIFDEGKIVSEWMLFTFKATEHEGEML-KQSPEGKLEWKKKDEVLEL-----------PMAAGDKWIFKHVLHS 130 (188)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEESCEESCCC-SEETTEEEEEEEGGGGGGS-----------CCCHHHHHHHHHHTTC
T ss_pred EEEEEEecCCCcceEEEEEEEEEEECCCCCCc-CCCCCEeEEEEEHHHhhhC-----------CCCHHHHHHHHHHHcC
Confidence 55544433222211122446666653 23332 2345579999999998664 4667777777776543
No 48
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.69 E-value=1.4e-16 Score=123.37 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=75.9
Q ss_pred ceeEEEEEEEe--CCCe--EEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303 43 LHRAFSVFLFN--SKYE--LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 118 (225)
Q Consensus 43 ~h~~v~v~i~d--~~g~--vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~ 118 (225)
.+.++++++++ .+|+ +||+||+.. |+.|++| ||++++||+ +.+||+||++||||+.+..
T Consensus 8 p~~~v~~vi~~~~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~--- 70 (139)
T 2yyh_A 8 PLLATDVIIRLWDGENFKGIVLIERKYP----PVGLALP-GGFVEVGER---------VEEAAAREMREETGLEVRL--- 70 (139)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEECSS----SCSEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCCEE---
T ss_pred CeEEEEEEEEEEcCCCcEEEEEEEecCC----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCCccc---
Confidence 34566666665 6788 999998742 4569998 999999999 8999999999999999762
Q ss_pred CceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHH
Q 027303 119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLK 173 (225)
Q Consensus 119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~ 173 (225)
...++.+ ..+..+. ..+...++|.+...+.+. +++|+.+++|++++++.
T Consensus 71 --~~~~~~~--~~~~~~~-~~~~~~~~f~~~~~~~~~-~~~e~~~~~W~~~~el~ 119 (139)
T 2yyh_A 71 --HKLMGVY--SDPERDP-RAHVVSVVWIGDAQGEPK-AGSDAKKVKVYRLEEIP 119 (139)
T ss_dssp --EEEEEEE--CCTTSCT-TSCEEEEEEEEEEESCCC-CCTTEEEEEEECTTSCC
T ss_pred --ceEEEEE--CCCCcCC-CceEEEEEEEEecCCccC-CCCCcceEEEEEHHHCC
Confidence 2334433 3222211 124455666665533333 45788999999999987
No 49
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.69 E-value=2.3e-17 Score=129.88 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=77.3
Q ss_pred CcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc
Q 027303 41 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 120 (225)
Q Consensus 41 ~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~ 120 (225)
..+|.++++++++ +|++||++| +|.|.+| ||++++||+ +.+||+||++||||+.+..
T Consensus 16 ~~~~~~~~~ii~~-~~~vLl~~r-------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~----- 72 (154)
T 2pqv_A 16 TVFGVRATALIVQ-NHKLLVTKD-------KGKYYTI-GGAIQVNES---------TEDAVVREVKEELGVKAQA----- 72 (154)
T ss_dssp EEEEEEEEECCEE-TTEEEEEEE-------TTEEECE-EEECBTTCC---------HHHHHHHHHHHHHCCCEEE-----
T ss_pred ceEeEEEEEEEEE-CCEEEEEec-------CCeEECc-ccCcCCCCC---------HHHHHHHHHHHHhCCeeee-----
Confidence 4466777777776 589999998 5899998 999999999 7999999999999999763
Q ss_pred eeeeeEEEEEcCCCCCCcceEEEEEEEEecCc-ccc--CCccccccEEEeCHHHHHHH
Q 027303 121 FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV-SVN--PNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 121 l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~-~~~--~~~~Ev~~~~Wv~~eel~~~ 175 (225)
...++.+.+..+.. +...+.+.++|.+.... ... .+++|+.+++|++++++.++
T Consensus 73 ~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 129 (154)
T 2pqv_A 73 GQLAFVVENRFEVD-GVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNI 129 (154)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGS
T ss_pred ceEEEEEeeeecCC-CCcceEEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhc
Confidence 22333333222211 11223445566665422 211 23467889999999999875
No 50
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.69 E-value=6.4e-16 Score=127.66 Aligned_cols=127 Identities=17% Similarity=0.269 Sum_probs=81.3
Q ss_pred eeEEEEEEEeC-CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 44 HRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 44 h~~v~v~i~d~-~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
+.+|.+++++. ++++||+||.. .++|.|.+| ||++++||+ +++||+||++||||+.+... .
T Consensus 26 ~v~v~~~v~~~~~~~vLL~~r~~---~~~g~w~lP-GG~ve~gEs---------~~~aA~REl~EEtGl~~~~~-----~ 87 (199)
T 3h95_A 26 QVGVAGAVFDESTRKILVVQDRN---KLKNMWKFP-GGLSEPEED---------IGDTAVREVFEETGIKSEFR-----S 87 (199)
T ss_dssp CCEEEEEEEETTTTEEEEEEESS---SSTTSBBCC-EEECCTTCC---------HHHHHHHHHHHHHCCCEEEE-----E
T ss_pred cceEEEEEEeCCCCEEEEEEEcC---CCCCCEECC-ccccCCCCC---------HHHHHHHHHHHHhCCccccc-----e
Confidence 35566666664 48999998864 258999999 999999999 89999999999999997621 1
Q ss_pred eeeEE-EEEcCCCCCCcceEEEEEEEEe--c-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303 123 PLGRI-LYKAPSDGKWGEHELDYLLFIV--R-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 198 (225)
Q Consensus 123 ~l~~~-~y~~~~~~~~~e~~~~~v~~~~--~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~ 198 (225)
.++.. .+..+ +... ....+|++. . ...+.++++|+.+++|++++++.++. ...|....++..
T Consensus 88 l~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~----------~~~~~~~~~~~~ 153 (199)
T 3h95_A 88 VLSIRQQHTNP--GAFG--KSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTE----------NTTPITSRVARL 153 (199)
T ss_dssp EEEEEECC-------------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCS----------SBCHHHHHHHHH
T ss_pred EEEEEeeecCC--CCce--eEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhh----------hcChHHHHHHHH
Confidence 22211 11211 1111 111222222 2 33456678899999999999999863 234445555555
Q ss_pred HHHH
Q 027303 199 FLFK 202 (225)
Q Consensus 199 ~l~~ 202 (225)
++.+
T Consensus 154 ~~~~ 157 (199)
T 3h95_A 154 LLYG 157 (199)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5443
No 51
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=134.95 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=81.1
Q ss_pred ceeEEEEEEEeC-CCeEEEeeecCCC------------------------------CCCCCCeeeccccCCCC-CCChhh
Q 027303 43 LHRAFSVFLFNS-KYELLLQQRSGTK------------------------------VTFPLVWTNTCCSHPLY-RESELI 90 (225)
Q Consensus 43 ~h~~v~v~i~d~-~g~vLL~rRs~~k------------------------------~~~pg~W~~p~gG~ve~-gEs~~~ 90 (225)
.|.+|++++++. ++++||+|+.... ...++.|++| ||++++ ||+
T Consensus 35 ~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welP-gG~ve~~gEs--- 110 (218)
T 3q91_A 35 THDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELC-AGLVDQPGLS--- 110 (218)
T ss_dssp CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECE-EEECCSSSCC---
T ss_pred cCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECC-cceeCCCCCC---
Confidence 367899999984 5788887643211 0116899999 999999 999
Q ss_pred hhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecC-------ccccCCcccccc
Q 027303 91 EENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-------VSVNPNPDEVAE 163 (225)
Q Consensus 91 ~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-------~~~~~~~~Ev~~ 163 (225)
+++||+||++||||+.+. ...+..++.+.. .+ +.. ...+++|.+... ....++++|+.+
T Consensus 111 ------~~eaA~REl~EEtGl~~~---~~~l~~l~~~~~-~~---g~~-~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~e 176 (218)
T 3q91_A 111 ------LEEVACKEAWEECGYHLA---PSDLRRVATYWS-GV---GLT-GSRQTMFYTEVTDAQRSGPGGGLVEEGELIE 176 (218)
T ss_dssp ------HHHHHHHHHHHHHCBCCC---GGGCEEEEEEEE-C------C-CEEEEEEEEEECGGGBCC---------CCEE
T ss_pred ------HHHHHHHHHHHHhCCccc---cCceEEEEEEec-CC---Ccc-ceEEEEEEEEECCcccccCCCCCCCCCcEEE
Confidence 899999999999999983 224566766532 22 112 344566666532 124466789999
Q ss_pred EEEeCHHHHHHHHHhcc
Q 027303 164 YKYVNREQLKELLRKAD 180 (225)
Q Consensus 164 ~~Wv~~eel~~~~~~~~ 180 (225)
+.|+|++++.+++..+.
T Consensus 177 v~wv~l~el~~~i~~g~ 193 (218)
T 3q91_A 177 VVHLPLEGAQAFADDPD 193 (218)
T ss_dssp EEEEEGGGHHHHHHCTT
T ss_pred EEEEEHHHHHHHHHcCC
Confidence 99999999999999863
No 52
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.68 E-value=5.4e-17 Score=135.09 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=76.8
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
.+.++.+++++ +|++||+||+. +|.|.+| ||++++||+ +.+||+||++||||+.+.. ..
T Consensus 67 ~~~~v~~vv~~-~~~vLLv~r~~-----~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~v~~-----~~ 125 (205)
T 3q1p_A 67 PKVDIRAVVFQ-NEKLLFVKEKS-----DGKWALP-GGWADVGYT---------PTEVAAKEVFEETGYEVDH-----FK 125 (205)
T ss_dssp CEEEEEEEEEE-TTEEEEEEC--------CCEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE-----EE
T ss_pred CcceEEEEEEE-CCEEEEEEEcC-----CCcEECC-cCccCCCCC---------HHHHHHHHHHHHHCCcccc-----ce
Confidence 45677778887 68999999862 6899998 999999999 8999999999999999762 23
Q ss_pred eeeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHH
Q 027303 123 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
.++.+.+..........+.+.++|.+.. .+.+..+ .|+.+++|++++++.++
T Consensus 126 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l 178 (205)
T 3q1p_A 126 LLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTS-IETEEVEFFGENELPNL 178 (205)
T ss_dssp EEEEEEHHHHSCCCCSSCEEEEEEEEEEEEECCCCC-TTSCCEEEECTTSCCCB
T ss_pred EEEEEeccccCCCCCCceEEEEEEEEEecCCccCCC-CcceEEEEEeHHHhhhc
Confidence 3444332211111112244445555554 3344444 78999999999999765
No 53
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.67 E-value=3.1e-16 Score=128.56 Aligned_cols=125 Identities=12% Similarity=0.011 Sum_probs=87.5
Q ss_pred eeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 44 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 44 h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
..++.+++++ +|++||++|.... .+|.|++| ||++++||+ +++||+||++||||+.+... ..
T Consensus 40 ~~~v~~ii~~-~~~vLL~~r~~~~--~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~ 101 (189)
T 3cng_A 40 KVIVGCIPEW-ENKVLLCKRAIAP--YRGKWTLP-AGFMENNET---------LVQGAARETLEEANARVEIR-----EL 101 (189)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSS--STTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCEEEE-----EE
T ss_pred ceEEEEEEEe-CCEEEEEEccCCC--CCCeEECc-eeeccCCCC---------HHHHHHHHHHHHHCCccccc-----ee
Confidence 4567777777 6899999997543 38999999 999999999 89999999999999997621 22
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 202 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 202 (225)
++.+.+ +. .+...++|.+... ..+. ..+|+.+++|++++++... ....|.....+.+|+..
T Consensus 102 ~~~~~~--~~-----~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~~----------~l~~~~~~~~l~~~l~~ 163 (189)
T 3cng_A 102 YAVYSL--PH-----ISQVYMLFRAKLLDLDFF-PGIESLEVRLFGEQEIPWN----------DIAFRVIHDPLKRYMEE 163 (189)
T ss_dssp EEEEEE--GG-----GTEEEEEEEEEECCSCCC-CCTTEEEEEEECTTTCCGG----------GBSCHHHHHHHHHHHHH
T ss_pred EEEEec--CC-----CcEEEEEEEEEeCCCccC-CCccceeEEEECHHHcCcc----------cccChHHHHHHHHHHHh
Confidence 333222 21 1345566666543 3333 3578899999999998621 12356677777777665
Q ss_pred HH
Q 027303 203 WW 204 (225)
Q Consensus 203 ~~ 204 (225)
..
T Consensus 164 ~~ 165 (189)
T 3cng_A 164 RH 165 (189)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 54
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.66 E-value=3.8e-16 Score=129.32 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=73.6
Q ss_pred eeEEEEEE-EeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 44 HRAFSVFL-FNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 44 h~~v~v~i-~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
++++++++ .+.++++||+||.. .||.|++| ||++++||+ +++||+||++||||+.+.. ..
T Consensus 41 ~~~~~vi~~~~~~~~vLLv~r~~----~~g~W~lP-gG~ve~gEt---------~~eaa~REl~EEtGl~~~~-----~~ 101 (194)
T 2fvv_A 41 KRAACLCFRSESEEEVLLVSSSR----HPDRWIVP-GGGMEPEEE---------PSVAAVREVCEEAGVKGTL-----GR 101 (194)
T ss_dssp EEEEEEEESSTTCCEEEEEECSS----CTTSEECS-EEECCTTCC---------HHHHHHHHHHHHHCEEEEE-----EE
T ss_pred ccEEEEEEEECCCCEEEEEEEeC----CCCcEECC-CCcCCCCcC---------HHHHHHHHHHHHhCCcccc-----ce
Confidence 44444444 24568999999863 36999999 999999999 8999999999999999762 34
Q ss_pred eeeEEEEEcCCCCCCcceEEEEEEEEecCcccc---CCccccccEEEeCHHHHHHHHHh
Q 027303 123 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN---PNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~---~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
.++.+.+. .. ....++|.+....... .+..+..+++|++++++.+++..
T Consensus 102 ~l~~~~~~--~~-----~~~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~~ 153 (194)
T 2fvv_A 102 LVGIFENQ--ER-----KHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQY 153 (194)
T ss_dssp EEEEEEET--TT-----TEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTT
T ss_pred EEEEEEcC--CC-----ceEEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHhc
Confidence 55555431 11 1234455444322111 11224578999999999998755
No 55
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.66 E-value=2.1e-16 Score=131.11 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=82.5
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.+|++++++.+ ++||++|... ...+|.|++| ||++++||+ +++||+||++||||+.+. .+..+
T Consensus 50 ~av~vl~~~~~-~vLLvrq~r~-~~~~~~welP-gG~ve~gEs---------~~~aA~REl~EEtGl~~~-----~~~~l 112 (198)
T 1vhz_A 50 EAVMIVPIVDD-HLILIREYAV-GTESYELGFS-KGLIDPGES---------VYEAANRELKEEVGFGAN-----DLTFL 112 (198)
T ss_dssp CEEEEEEEETT-EEEEEEEEET-TTTEEEEECE-EEECCTTCC---------HHHHHHHHHHHHHSEEEE-----EEEEE
T ss_pred CEEEEEEEECC-EEEEEEcccC-CCCCcEEEeC-cccCCCCcC---------HHHHHHHHHHHHHCCCcC-----ceEEE
Confidence 46777778765 9999877533 2457899998 999999999 899999999999999976 24556
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEec--CccccCCccccccEEEeCHHHHHHHHHhc
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~--~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
+.+.+ .+ +.. ...+++|.+.. ......+++|..++.|++++++.+++..+
T Consensus 113 ~~~~~-~~---~~~-~~~~~~f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 164 (198)
T 1vhz_A 113 KKLSM-AP---SYF-SSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDP 164 (198)
T ss_dssp EEEEC-CT---TTC-CCEEEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred EEEeC-CC---Ccc-CcEEEEEEEEeCCcccCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence 65532 22 112 23445565553 22344567889999999999999998775
No 56
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.66 E-value=7.7e-16 Score=128.15 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=78.5
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCC-CCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPL-YRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve-~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
.+|++++++.+|++||++|.... .++|.|++| ||+++ .||+ +++||+||++||||+.+.. +.+
T Consensus 44 ~av~v~i~~~~~~vLLvrr~r~~-~~~~~w~lP-gG~ve~~gEs---------~~~aa~REl~EEtGl~~~~-----~~~ 107 (207)
T 1mk1_A 44 GAVAIVAMDDNGNIPMVYQYRHT-YGRRLWELP-AGLLDVAGEP---------PHLTAARELREEVGLQAST-----WQV 107 (207)
T ss_dssp CEEEEEECCTTSEEEEEEEEETT-TTEEEEECC-EEECCSTTCC---------HHHHHHHHHHHHHCEEEEE-----EEE
T ss_pred CEEEEEEEcCCCEEEEEEeecCC-CCCcEEEeC-CccccCCCCC---------HHHHHHHHHHHHHCCcccc-----cEE
Confidence 57788888888999998876443 467899999 99999 9999 8999999999999999763 344
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEec-Cccc---cCCccccccEEEeCHHHHHHHHHhc
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSV---NPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~---~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
++.+ |..+ +.. .+.+++|.+.. .... ..+++|+.+++|++++++.+++..+
T Consensus 108 l~~~-~~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 162 (207)
T 1mk1_A 108 LVDL-DTAP---GFS-DESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRG 162 (207)
T ss_dssp EEEE-CSCT---TTB-CCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHHTT
T ss_pred EEEE-EcCC---Ccc-ccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence 5544 3222 222 22345565543 2111 1456889999999999999999875
No 57
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.66 E-value=1.3e-15 Score=135.48 Aligned_cols=136 Identities=12% Similarity=0.135 Sum_probs=92.6
Q ss_pred cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303 42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 121 (225)
Q Consensus 42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l 121 (225)
..+.++.+++++ +|++||+||.... .+|.|++| ||++++||+ +++||+||++||||+++....+..
T Consensus 206 ~~~~~v~~vv~~-~~~vLL~~r~~~~--~~g~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~v~~~~~~~- 271 (352)
T 2qjt_B 206 PNFVTVDALVIV-NDHILMVQRKAHP--GKDLWALP-GGFLECDET---------IAQAIIRELFEETNINLTHEQLAI- 271 (352)
T ss_dssp CEEEEEEEEEEE-TTEEEEEEESSSS--STTCEECS-EEECCTTSC---------HHHHHHHHHHHHHCCSCCHHHHHH-
T ss_pred CCceEEEEEEEE-CCEEEEEEEcCCC--CCCeEECC-CCcCCCCCC---------HHHHHHHHHHHhhCCCcccchhcc-
Confidence 456777888774 6899999997543 47999998 999999999 899999999999999976321100
Q ss_pred eeeeEEEEEcCCCCCCcceEEEEEEEEec-Ccc--cc-CCccccccEEEeCH-HHHHHHHHhccCCCCCcccChhHHHHH
Q 027303 122 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVS--VN-PNPDEVAEYKYVNR-EQLKELLRKADAGEEGLKLSPWFRLVV 196 (225)
Q Consensus 122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~--~~-~~~~Ev~~~~Wv~~-eel~~~~~~~~~~~~~~~~~p~~~~~~ 196 (225)
.+.....|..+..... .+...++|.+.. .+. +. .+++|+.+++|+++ +++.++ +..+.|..+.++
T Consensus 272 ~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~---------~~~~~~~~~~il 341 (352)
T 2qjt_B 272 AKRCEKVFDYPDRSVR-GRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNI---------CDRMLEDHYQII 341 (352)
T ss_dssp HEEEEEEECCTTSCTT-SEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHT---------TTSBSTTHHHHH
T ss_pred eeeeeEEecCCCCCCC-ccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhh---------hhhhChhHHHHH
Confidence 0112233443332211 133445555443 222 22 24688999999999 999885 336788888888
Q ss_pred HHHHH
Q 027303 197 DNFLF 201 (225)
Q Consensus 197 ~~~l~ 201 (225)
++++.
T Consensus 342 ~~~~~ 346 (352)
T 2qjt_B 342 TILLE 346 (352)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88854
No 58
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.66 E-value=5.2e-16 Score=132.62 Aligned_cols=138 Identities=13% Similarity=0.096 Sum_probs=91.4
Q ss_pred ceeEEEEEEE---eCCCeEEEeeecCCCCCCCCCeeeccccCCCC--CCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCC
Q 027303 43 LHRAFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY--RESELIEENALGVRNAAQRKLLDELGICAEDVP 117 (225)
Q Consensus 43 ~h~~v~v~i~---d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~--gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~ 117 (225)
.+.+|.++|+ +.+++|||++|+. ..++|.|.+| ||++++ ||| +.+||+||++||||+.+..
T Consensus 21 p~v~v~~vi~~~~~~~~~vLLv~R~~--~~~~g~W~lP-GG~ve~~~gEs---------~~~AA~REl~EEtGl~~~~-- 86 (240)
T 3gz5_A 21 QLLTVDAVLFTYHDQQLKVLLVQRSN--HPFLGLWGLP-GGFIDETCDES---------LEQTVLRKLAEKTAVVPPY-- 86 (240)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEECCS--SSSTTCEECS-EEECCTTTCSB---------HHHHHHHHHHHHHSSCCSE--
T ss_pred CccEEEEEEEEEeCCCcEEEEEECcC--CCCCCCEECC-ccccCCCCCcC---------HHHHHHHHHHHHHCCCCCc--
Confidence 3466666666 4446999999984 3468999999 999999 999 8999999999999998752
Q ss_pred CCceeeeeEEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHH
Q 027303 118 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV 196 (225)
Q Consensus 118 ~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~ 196 (225)
+..++++........+ +.+..+|.+... .....+.+|+.+++|++++++.+. .+..-.+.++
T Consensus 87 ---~~~l~~~~~~~r~~~~---~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~~-----------~l~~dh~~il 149 (240)
T 3gz5_A 87 ---IEQLCTVGNNSRDARG---WSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQM-----------PLAFDHLQLI 149 (240)
T ss_dssp ---EEEEEEEEESSSSTTS---CEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTTS-----------CCSTTHHHHH
T ss_pred ---eeeEEEeCCCccCCCc---eEEEEEEEEEecccccCCCCCcccceEEecHHHcccC-----------CcchhHHHHH
Confidence 4456665443222222 334455555543 223334678899999999998532 2333345555
Q ss_pred HHHHHHHHhhhcccc
Q 027303 197 DNFLFKWWDHLEKGT 211 (225)
Q Consensus 197 ~~~l~~~~~~~~~~~ 211 (225)
+..+......+++..
T Consensus 150 ~~a~~rlr~kl~y~~ 164 (240)
T 3gz5_A 150 EQARERLTQKALYSL 164 (240)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcccCc
Confidence 555555555555543
No 59
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.66 E-value=8.2e-16 Score=126.57 Aligned_cols=115 Identities=15% Similarity=0.121 Sum_probs=80.8
Q ss_pred ceeEEEEEEEeC-CCeEEEeeecCCC----CC-CCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCC
Q 027303 43 LHRAFSVFLFNS-KYELLLQQRSGTK----VT-FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 116 (225)
Q Consensus 43 ~h~~v~v~i~d~-~g~vLL~rRs~~k----~~-~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i 116 (225)
.|.++++++++. ++++||.++.... .. .++.|++| ||+++ ||+ +++||+||++||||+.+.
T Consensus 44 ~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lP-gG~ve-gE~---------~~~aa~REl~EEtG~~~~-- 110 (191)
T 3o6z_A 44 RGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESC-AGLLD-NDE---------PEVCIRKEAIEETGYEVG-- 110 (191)
T ss_dssp CCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECE-EEECC-SSC---------HHHHHHHHHHHHC-CCCS--
T ss_pred cCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEec-ceEeC-CCC---------HHHHHHHHHHHHhCCccC--
Confidence 356788888885 5899998765311 11 57899999 99999 999 899999999999999975
Q ss_pred CCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCcc------ccCCccccccEEEeCHHHHHHHHHhc
Q 027303 117 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS------VNPNPDEVAEYKYVNREQLKELLRKA 179 (225)
Q Consensus 117 ~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~------~~~~~~Ev~~~~Wv~~eel~~~~~~~ 179 (225)
.+.+++.+ |..+ +.. ...+++|.+..... ... ++|+.+++|+|++++.+++..+
T Consensus 111 ---~~~~l~~~-~~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~~~g 170 (191)
T 3o6z_A 111 ---EVRKLFEL-YMSP---GGV-TELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEMIKTG 170 (191)
T ss_dssp ---CEEEEEEE-ESCT---TTB-CCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHHHHHS
T ss_pred ---cEEEEEEE-EeCC---Ccc-CcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHHHHcC
Confidence 34566654 3222 122 33456666664211 122 6889999999999999999986
No 60
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.66 E-value=1e-16 Score=133.51 Aligned_cols=123 Identities=14% Similarity=0.126 Sum_probs=82.6
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
.+.++.+++++. |++||+||+ +|.|.+| ||++++||+ +.+||+||++||||+.+.. ..
T Consensus 69 ~~~~v~~vv~~~-~~vLLvrr~------~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~ 126 (206)
T 3o8s_A 69 PKLDTRAAIFQE-DKILLVQEN------DGLWSLP-GGWCDVDQS---------VKDNVVKEVKEEAGLDVEA-----QR 126 (206)
T ss_dssp CEEEEEEEEEET-TEEEEEECT------TSCEECS-EEECCTTSC---------HHHHHHHHHHHHHCEEEEE-----EE
T ss_pred CCccEEEEEEEC-CEEEEEEec------CCeEECC-eeccCCCCC---------HHHHHHHHHHHHHCCccee-----ee
Confidence 346677777774 899999987 6899999 999999999 8999999999999999763 23
Q ss_pred eeeEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 027303 123 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 199 (225)
Q Consensus 123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~ 199 (225)
.++.+.+..........+...++|.+.. .+.+..+ .|+.+++|++++++.++ .+.+.++..+..+
T Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l-----------~~~~~~~~~l~~~ 192 (206)
T 3o8s_A 127 VVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQPN-SETVASGFFSLDDLPPL-----------YLGKNTAEQLALC 192 (206)
T ss_dssp EEEEEEHHHHCC-----CEEEEEEEEEEEEECCCCC-SSCSEEEEECTTSCCCB-----------CTTTCCHHHHHHH
T ss_pred EEEEEeccccCCCCCCceEEEEEEEEEecCCeecCC-CCceEEEEEeHHHhhhc-----------cCCCchHHHHHHH
Confidence 4444432111111111233344555543 3334443 78999999999999765 3445555555555
No 61
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.65 E-value=2.6e-16 Score=133.31 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=79.5
Q ss_pred cceeEEEEEEE---eCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCC
Q 027303 42 LLHRAFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 118 (225)
Q Consensus 42 ~~h~~v~v~i~---d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~ 118 (225)
..+.+|.++|+ +.++++||++|... .++|.|.+| ||++++||| +++||+||++||||+.+..
T Consensus 11 ~p~v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~lP-GG~ve~gEs---------~~~Aa~REl~EEtGl~~~~--- 75 (226)
T 2fb1_A 11 TFYLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLM-GGFVQKDES---------VDDAAKRVLAELTGLENVY--- 75 (226)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECE-EEECCTTSC---------HHHHHHHHHHHHHCCCSCE---
T ss_pred CCeEEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEECC-eeccCCCCC---------HHHHHHHHHHHHHCCCCCc---
Confidence 35677788877 45679999999753 468999999 999999999 8999999999999999762
Q ss_pred CceeeeeEEEEEcCCCCCCcceEEEEEEEEecC-ccccCCccccccEEEeCHHHHHH
Q 027303 119 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKE 174 (225)
Q Consensus 119 ~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~~~~~~Ev~~~~Wv~~eel~~ 174 (225)
+..++++. .+.... ..+.+..+|.+... .....+++|+.+++|++++++.+
T Consensus 76 --~~~l~~~~--~~~r~~-~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~ 127 (226)
T 2fb1_A 76 --MEQVGAFG--AIDRDP-GERVVSIAYYALININEYDRELVQKHNAYWVNINELPA 127 (226)
T ss_dssp --EEEEEEEC--CTTSSS-SSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCC
T ss_pred --eEEEEEeC--CCCcCC-CceEEEEEEEEEecCcccccCCccccceEEEEHHHhhh
Confidence 34455442 222111 11334445555543 22223457889999999999864
No 62
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.65 E-value=3.5e-16 Score=123.94 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=80.4
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCc-eee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE-FTP 123 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~-l~~ 123 (225)
.++++++++ +|++||++|+. +|.|.+| ||++++||+ +.+||+||++||||+.+.....-. +..
T Consensus 2 ~~~~~vi~~-~~~vLL~~r~~-----~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~~~~~~ 65 (156)
T 1k2e_A 2 IVTSGVLVE-NGKVLLVKHKR-----LGVYIYP-GGHVEHNET---------PIEAVKREFEEETGIVVEPIGFTYGIID 65 (156)
T ss_dssp EEEEEECEE-TTEEEEEECTT-----TCSEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEECCCCCCCBS
T ss_pred eEEEEEEEE-CCEEEEEEEcC-----CCcEECC-eeecCCCCC---------HHHHHHHHHHHHHCCcceeccceeeecc
Confidence 356777777 79999998863 6899999 999999999 899999999999999986432200 000
Q ss_pred ----------eeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHH
Q 027303 124 ----------LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193 (225)
Q Consensus 124 ----------l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~ 193 (225)
.....+.. ..+. ....+..+|.+.. ..+|..+++|++++++.++ .+.|..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~f~~~~------~~~e~~~~~W~~~~el~~~-----------~~~~~~~ 126 (156)
T 1k2e_A 66 ENAVERPMPLVILEEVVK-YPEE-THIHFDLIYLVKR------VGGDLKNGEWIDVREIDRI-----------ETFPNVR 126 (156)
T ss_dssp SSEEECCCCSEEEEEEEE-CSSC-EEEEEEEEEEEEE------EEECCCSCEEEEGGGGGGS-----------CBSTTHH
T ss_pred cccccccccceeeeeeec-CCCC-ceEEEEEEEEEEe------cCCcEeeeEEeCHHHHhcC-----------CCChHHH
Confidence 00000000 1111 1122333454442 2356889999999999753 4667777
Q ss_pred HHHHHHHHH
Q 027303 194 LVVDNFLFK 202 (225)
Q Consensus 194 ~~~~~~l~~ 202 (225)
.+++.++..
T Consensus 127 ~~l~~~~~~ 135 (156)
T 1k2e_A 127 KVVSLALST 135 (156)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777543
No 63
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.65 E-value=1.4e-15 Score=134.32 Aligned_cols=136 Identities=10% Similarity=0.042 Sum_probs=86.6
Q ss_pred cceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCce
Q 027303 42 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 121 (225)
Q Consensus 42 ~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l 121 (225)
..+.++.+++++ +|++||+||+.. ..+|.|++| ||++++||+ +++||+||++||||+.+....+..
T Consensus 201 ~~~~~v~~vi~~-~~~vLL~~r~~~--~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~~~- 266 (341)
T 2qjo_A 201 PTFITTDAVVVQ-AGHVLMVRRQAK--PGLGLIALP-GGFIKQNET---------LVEGMLRELKEETRLKVPLPVLRG- 266 (341)
T ss_dssp CCEEEEEEEEEE-TTEEEEEECCSS--SSTTCEECS-EEECCTTSC---------HHHHHHHHHHHHHCCSSCHHHHHH-
T ss_pred CCceEEEEEEEe-CCEEEEEEecCC--CCCCeEECC-CCcCCCCCC---------HHHHHHHHHhhhhCCccccccccc-
Confidence 346677777775 689999998753 348999998 999999999 899999999999999976321100
Q ss_pred eeeeEEEEEcCCCCCCcceEEEEEEEEecC-ccc--cCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 027303 122 TPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSV--NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 198 (225)
Q Consensus 122 ~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~-~~~--~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~ 198 (225)
.......|..+..... .+...++|.+... +.. ..+++|+.+++|++++++.++ +..+.+..+.++++
T Consensus 267 ~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~---------~~~~~~~~~~il~~ 336 (341)
T 2qjo_A 267 SIVDSHVFDAPGRSLR-GRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQ---------EEQIYEDHFQIIQH 336 (341)
T ss_dssp TEEEEEEECCTTSCTT-SCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHT---------GGGBCTTHHHHHHH
T ss_pred cccceEEEeCCCCCCC-CcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhh---------hhhhchHHHHHHHH
Confidence 0011223333322111 1344555655542 221 245688999999999999885 23577778888887
Q ss_pred HHH
Q 027303 199 FLF 201 (225)
Q Consensus 199 ~l~ 201 (225)
++.
T Consensus 337 ~~~ 339 (341)
T 2qjo_A 337 FVS 339 (341)
T ss_dssp HC-
T ss_pred HHh
Confidence 754
No 64
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=99.65 E-value=5.8e-16 Score=134.83 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=77.6
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 124 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l 124 (225)
.++.++ ++.++++||.||+... +|.|++| ||++++||| +++||+||++||||+++.. +.++
T Consensus 141 ~~viv~-v~~~~~vLL~rr~~~~---~g~w~lP-gG~vE~GEt---------~eeAa~REv~EEtGl~v~~-----~~~~ 201 (269)
T 1vk6_A 141 PCIIVA-IRRDDSILLAQHTRHR---NGVHTVL-AGFVEVGET---------LEQAVAREVMEESGIKVKN-----LRYV 201 (269)
T ss_dssp EEEEEE-EEETTEEEEEEETTTC---SSCCBCE-EEECCTTCC---------HHHHHHHHHHHHHCCEEEE-----EEEE
T ss_pred cEEEEE-EEeCCEEEEEEecCCC---CCcEECC-cCcCCCCCC---------HHHHHHHHHHHHhCceeee-----EEEE
Confidence 344443 4456899999987542 6999998 999999999 8999999999999999763 4556
Q ss_pred eEEEEEcCCCCCCcceEEEEEEEEec-CccccCCccccccEEEeCHHHHHH
Q 027303 125 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKE 174 (225)
Q Consensus 125 ~~~~y~~~~~~~~~e~~~~~v~~~~~-~~~~~~~~~Ev~~~~Wv~~eel~~ 174 (225)
+.+.+..+ +...++|.+.. +..+.++++|+.+++|++++++.+
T Consensus 202 ~~~~~~~~-------~~~~~~f~a~~~~~~~~~~~~E~~~~~W~~~~el~~ 245 (269)
T 1vk6_A 202 TSQPWPFP-------QSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPL 245 (269)
T ss_dssp EEEEEETT-------EEEEEEEEEEEEECCCCCCTTTEEEEEEEETTSCCS
T ss_pred EEEecCCC-------CEEEEEEEEEECCCCcCCCCcceEEEEEEEHHHhhh
Confidence 66655432 33445565553 345566678999999999999865
No 65
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.64 E-value=6.6e-16 Score=124.41 Aligned_cols=115 Identities=13% Similarity=0.097 Sum_probs=77.8
Q ss_pred ceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCcee
Q 027303 43 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 122 (225)
Q Consensus 43 ~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~ 122 (225)
...++++++. .+|++||.+|+ +|.|.+| ||++++||+ +.+||+||++||||+.+.. +.
T Consensus 15 ~~~~~~~ii~-~~~~vLL~~r~------~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~-----~~ 72 (163)
T 3f13_A 15 LARRATAIIE-MPDGVLVTASR------GGRYNLP-GGKANRGEL---------RSQALIREIREETGLRINS-----ML 72 (163)
T ss_dssp CEEEEEEECE-ETTEEEEEECC---------BBCS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCE-----EE
T ss_pred ceEEEEEEEE-eCCEEEEEEEC------CCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCcccce-----eE
Confidence 3444444444 45889998875 5899999 999999999 8999999999999999763 33
Q ss_pred eeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303 123 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 201 (225)
Q Consensus 123 ~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 201 (225)
.++.+ ..+. ...++|.+..++.+.++ +|+.+++|++.+.. +..+.+..+.+++.|+.
T Consensus 73 ~l~~~--~~~~-------~~~~~f~~~~~~~~~~~-~E~~~~~W~~~~~~------------~~~l~~~~~~il~~~~~ 129 (163)
T 3f13_A 73 YLFDH--ITPF-------NAHKVYLCIAQGQPKPQ-NEIERIALVSSPDT------------DMDLFVEGRAILRRYAR 129 (163)
T ss_dssp EEEEE--ECSS-------EEEEEEEEEC-CCCCCC-TTCCEEEEESSTTC------------SSCBCHHHHHHHHHHHH
T ss_pred EEEEE--ecCC-------eEEEEEEEEECCcCccC-CCceEEEEECcccc------------cCCCCHHHHHHHHHHHH
Confidence 44433 3221 34456666655555555 48999999993221 23677777777777754
No 66
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.58 E-value=6.5e-15 Score=133.19 Aligned_cols=130 Identities=9% Similarity=0.014 Sum_probs=91.3
Q ss_pred hhhcccCCcceeEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCC
Q 027303 34 MEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 113 (225)
Q Consensus 34 ~~~~~~~~~~h~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~ 113 (225)
+++.++......++.+++.|.+|++||+||+.. ..++|.|+|| ||+++.| + +++|+.||++||||+.+
T Consensus 230 vK~~kk~~~~~~~~~~vi~~~~g~vLL~rR~~~-g~~~GlWefP-GG~ve~g-t---------~~~al~REl~EE~Gl~v 297 (369)
T 3fsp_A 230 VKMKKTAVKQVPLAVAVLADDEGRVLIRKRDST-GLLANLWEFP-SCETDGA-D---------GKEKLEQMVGEQYGLQV 297 (369)
T ss_dssp CCCCCCCCEEEEEEEEEEECSSSEEEEEECCSS-STTTTCEECC-EEECSSS-C---------THHHHHHHHTTSSSCCE
T ss_pred ccccccCcceEEEEEEEEEeCCCEEEEEECCCC-CCcCCcccCC-CcccCCC-C---------cHHHHHHHHHHHhCCce
Confidence 333333333455666777778899999999854 4689999999 9999999 8 69999999999999998
Q ss_pred CCCCCCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHH
Q 027303 114 EDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 193 (225)
Q Consensus 114 ~~i~~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~ 193 (225)
.... .++.+.+..+. .+...++|.+..... ..|..+++|++++++.++ .+.+..+
T Consensus 298 ~~~~-----~l~~~~h~~~h-----~~~~~~~~~~~~~~~----~~e~~~~~Wv~~~el~~~-----------~l~~~~~ 352 (369)
T 3fsp_A 298 ELTE-----PIVSFEHAFSH-----LVWQLTVFPGRLVHG----GPVEEPYRLAPEDELKAY-----------AFPVSHQ 352 (369)
T ss_dssp EECC-----CCCEEEEECSS-----EEEEEEEEEEEECCS----SCCCTTEEEEEGGGGGGS-----------CCCHHHH
T ss_pred eeec-----ccccEEEEcce-----EEEEEEEEEEEEcCC----CCCccccEEeeHHHhhhC-----------CCCHHHH
Confidence 6432 34555444321 122334555554322 357789999999999764 5777777
Q ss_pred HHHHHHH
Q 027303 194 LVVDNFL 200 (225)
Q Consensus 194 ~~~~~~l 200 (225)
.+++.+.
T Consensus 353 ~il~~l~ 359 (369)
T 3fsp_A 353 RVWREYK 359 (369)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
No 67
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.57 E-value=8.5e-15 Score=127.41 Aligned_cols=134 Identities=11% Similarity=0.053 Sum_probs=81.7
Q ss_pred eEEEEEEEeC-CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceee
Q 027303 45 RAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 123 (225)
Q Consensus 45 ~~v~v~i~d~-~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~ 123 (225)
.++++++++. +|++||++|.. .+|.|.+| ||++++||+ +++||+||++||||+.+..+. .
T Consensus 102 ~~v~avv~~~~~~~vLLv~r~~----~~g~W~lP-gG~ve~gEs---------~~eAA~REl~EEtGl~~~~l~-----~ 162 (271)
T 2a6t_A 102 PVRGAIMLDMSMQQCVLVKGWK----ASSGWGFP-KGKIDKDES---------DVDCAIREVYEETGFDCSSRI-----N 162 (271)
T ss_dssp CEEEEEEBCSSSSEEEEEEESS----TTCCCBCS-EEECCTTCC---------HHHHHHHHHHHHHCCCCTTTC-----C
T ss_pred CeEEEEEEECCCCEEEEEEEeC----CCCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCceeee-----e
Confidence 4667777775 48999999864 36899999 999999999 899999999999999987431 1
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecC---ccccC-CccccccEEEeCHHHHHHHHHhccCCC--CCcccChhHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRD---VSVNP-NPDEVAEYKYVNREQLKELLRKADAGE--EGLKLSPWFRLVVD 197 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~---~~~~~-~~~Ev~~~~Wv~~eel~~~~~~~~~~~--~~~~~~p~~~~~~~ 197 (225)
+.. |..+.. . ...+++|++... ....+ +++|+.+++|++++++.++...+.... ......|+ ...+.
T Consensus 163 ~~~--~~~~~~---~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~p~-~~~L~ 235 (271)
T 2a6t_A 163 PNE--FIDMTI---R-GQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQTMKNKFYMVIPF-LAPLK 235 (271)
T ss_dssp TTC--EEEEEE---T-TEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC------CCGGGTTTGGG-HHHHH
T ss_pred eee--eccCCc---C-CceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhcCccccccchhhhhHH-HHHHH
Confidence 221 221110 1 223455555431 22232 567899999999999988654431100 01112344 55666
Q ss_pred HHHHHHH
Q 027303 198 NFLFKWW 204 (225)
Q Consensus 198 ~~l~~~~ 204 (225)
+||..-.
T Consensus 236 ~wl~~~~ 242 (271)
T 2a6t_A 236 KWIKKRN 242 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 7766543
No 68
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.56 E-value=6.9e-15 Score=122.79 Aligned_cols=114 Identities=14% Similarity=0.043 Sum_probs=75.9
Q ss_pred eeEEEEEEE--eC--CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCC
Q 027303 44 HRAFSVFLF--NS--KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 119 (225)
Q Consensus 44 h~~v~v~i~--d~--~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~ 119 (225)
+.+|+++.+ +. ++++||.++... ...++.|++| ||++++||+ +++||+||++||||+.+..
T Consensus 61 ~~av~v~~v~~~~~~~~~vlLv~q~R~-~~~~~~welP-gG~ve~gEs---------~~~aA~REl~EEtGl~~~~---- 125 (212)
T 2dsc_A 61 ADGVAVIPVLQRTLHYECIVLVKQFRP-PMGGYCIEFP-AGLIDDGET---------PEAAALRELEEETGYKGDI---- 125 (212)
T ss_dssp CSEEEEEEEEECTTSCCEEEEEEEEEG-GGTEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCCEE----
T ss_pred CCEEEEEEEEeCCCCCcEEEEEEeecC-CCCCcEEECC-ccccCCCCC---------HHHHHHHHHHHHhCCCccc----
Confidence 345555543 32 247888764321 1346789999 999999999 7999999999999999763
Q ss_pred ceeeeeEEEEEcCCCCCCcceEEEEEEEEec---Cc-----cccCCccccccEEEeCHHHHHHHHHh
Q 027303 120 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR---DV-----SVNPNPDEVAEYKYVNREQLKELLRK 178 (225)
Q Consensus 120 ~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~---~~-----~~~~~~~Ev~~~~Wv~~eel~~~~~~ 178 (225)
+..++.+ |..+ ++. .+..++|++.. .. ...++++|+.++.|++++++.+++..
T Consensus 126 -~~~l~~~-~~~~---~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 186 (212)
T 2dsc_A 126 -AECSPAV-CMDP---GLS-NCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDA 186 (212)
T ss_dssp -EEECCCE-ESCT---TTB-CCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHHHHH
T ss_pred -eEEeccE-EcCC---Ccc-CceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHHHHh
Confidence 2333333 3322 222 33445555442 11 23456789999999999999999874
No 69
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.55 E-value=1.4e-14 Score=125.98 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=97.1
Q ss_pred ceeEEEEEEEe--C---CCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCC
Q 027303 43 LHRAFSVFLFN--S---KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP 117 (225)
Q Consensus 43 ~h~~v~v~i~d--~---~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~ 117 (225)
.+.+|.++++. . +++|||++|... .++|.|.+| ||++++||+ +++||+||++||||+.+...
T Consensus 38 p~v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~lP-GG~ve~gEs---------~~~AA~REl~EEtGl~v~~~- 104 (273)
T 2fml_A 38 PSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALP-GGFVNRNES---------TEDSVLRETKEETGVVISQE- 104 (273)
T ss_dssp CEEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECC-EEECCTTSC---------HHHHHHHHHHHHHCCCCCGG-
T ss_pred CceEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEECC-ccCCCCCcC---------HHHHHHHHHHHHHCCCCCcC-
Confidence 34566666653 2 348999999754 468999999 999999999 89999999999999876522
Q ss_pred CCceeeeeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccC------------CCCC
Q 027303 118 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADA------------GEEG 185 (225)
Q Consensus 118 ~~~l~~l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~------------~~~~ 185 (225)
.+..++++ ..+..+.. .+.+.++|.+..........+|+.+++|++++++.+.+..+.. ....
T Consensus 105 --~l~~l~~~--~~~~r~~~-~~~~~~~y~a~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~ 179 (273)
T 2fml_A 105 --NIEQLHSF--SRPDRDPR-GWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGK 179 (273)
T ss_dssp --GEEEEEEE--CCTTSSTT-SSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSS
T ss_pred --cEEEEEEE--cCCCCCCC-ceEEEEEEEEEeCCCCCCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCC
Confidence 34445443 33322111 1345556666543322345578899999999987665422210 0001
Q ss_pred cccChhHHHHHHHHHHHHHhhhccccc
Q 027303 186 LKLSPWFRLVVDNFLFKWWDHLEKGTL 212 (225)
Q Consensus 186 ~~~~p~~~~~~~~~l~~~~~~~~~~~~ 212 (225)
..+.--...++...+..-...+++..+
T Consensus 180 ~~LafdH~~Il~~al~rlr~kl~y~~i 206 (273)
T 2fml_A 180 DTLAFDHSEIIIKAFNRVVDKMEHEPQ 206 (273)
T ss_dssp SCCSTTHHHHHHHHHHHHHHHTTTCCG
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCcH
Confidence 133334556777777777777777653
No 70
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.55 E-value=3.6e-14 Score=127.54 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=77.3
Q ss_pred eCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcC
Q 027303 53 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 132 (225)
Q Consensus 53 d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~ 132 (225)
+.+.+|||++|.. .|.|.+| ||++++||+ +++||+||++||||+.+.. ...++.+.|..+
T Consensus 35 ~~~~~vLLv~r~~-----~g~W~lP-gG~ve~gEs---------~~~AA~REl~EEtGl~~~~-----~~~l~~~~~~~~ 94 (364)
T 3fjy_A 35 LDSIEVCIVHRPK-----YDDWSWP-KGKLEQNET---------HRHAAVREIGEETGSPVKL-----GPYLCEVEYPLS 94 (364)
T ss_dssp HTTEEEEEEEETT-----TTEEECC-EEECCTTCC---------HHHHHHHHHHHHHSCCEEE-----EEEEEEEC----
T ss_pred CCceEEEEEEcCC-----CCCEECC-cCCCCCCCC---------HHHHHHHHHHHHhCCeeee-----ccccceEEEecc
Confidence 4445899999853 3899999 999999999 8999999999999999763 234554444433
Q ss_pred CCCCCc--------ceEEEEEEEEecC-cc------------ccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChh
Q 027303 133 SDGKWG--------EHELDYLLFIVRD-VS------------VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW 191 (225)
Q Consensus 133 ~~~~~~--------e~~~~~v~~~~~~-~~------------~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~ 191 (225)
..+.+. .+...++|.+... .. ..++++|+.+++|++++++.+++ ..+.
T Consensus 95 ~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~-----------~~~~ 163 (364)
T 3fjy_A 95 EEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKIL-----------SHST 163 (364)
T ss_dssp -----------------CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHC-----------SCHH
T ss_pred CCCcccccccccccCceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHh-----------cchh
Confidence 221110 0233455555432 21 13456899999999999999873 4455
Q ss_pred HHHHHHHHHHH
Q 027303 192 FRLVVDNFLFK 202 (225)
Q Consensus 192 ~~~~~~~~l~~ 202 (225)
.+.+++.++..
T Consensus 164 ~r~il~~~~~~ 174 (364)
T 3fjy_A 164 DKDTLAVFVDR 174 (364)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 66677777443
No 71
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.50 E-value=4.5e-15 Score=124.31 Aligned_cols=102 Identities=19% Similarity=0.119 Sum_probs=71.9
Q ss_pred EeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCC-ChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEE
Q 027303 52 FNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 130 (225)
Q Consensus 52 ~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE-s~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~ 130 (225)
++.++++||++| ++|.|++| ||++++|| + +++||+||++||||+.+..+.+....+++.+.+.
T Consensus 52 ~~~~~~vLl~~r------~~g~w~~P-GG~ve~gE~t---------~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~ 115 (212)
T 1u20_A 52 VPIRRVLLMMMR------FDGRLGFP-GGFVDTRDIS---------LEEGLKRELEEELGPALATVEVTEDDYRSSQVRE 115 (212)
T ss_dssp EECCEEEEEEEE------TTSCEECS-EEEECTTTSC---------HHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEEC
T ss_pred EecCCEEEEEEe------CCCeEECC-CcccCCCCCC---------HHHHHHHHHHHHHCCCccccceeeeeEEEecccc
Confidence 355678999988 37999999 99999999 9 7999999999999999875432222345555443
Q ss_pred cCCCCCCcceEEEEEEEEecC-ccc----------cCCccccccEEEeCHHHHHHH
Q 027303 131 APSDGKWGEHELDYLLFIVRD-VSV----------NPNPDEVAEYKYVNREQLKEL 175 (225)
Q Consensus 131 ~~~~~~~~e~~~~~v~~~~~~-~~~----------~~~~~Ev~~~~Wv~~eel~~~ 175 (225)
.+ .+...++|.+... +.+ ..++.|+.++.|+|++++.+.
T Consensus 116 ~~------~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~ 165 (212)
T 1u20_A 116 HP------QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR 165 (212)
T ss_dssp TT------SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred CC------CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence 32 1345566766542 111 123467889999999998653
No 72
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.50 E-value=4.1e-13 Score=114.55 Aligned_cols=145 Identities=11% Similarity=0.122 Sum_probs=94.5
Q ss_pred eEEEEEE-EeC-CC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChh-----------hhhhhhcHHHHHHHHHHhHh
Q 027303 45 RAFSVFL-FNS-KY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----------IEENALGVRNAAQRKLLDEL 109 (225)
Q Consensus 45 ~~v~v~i-~d~-~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~-----------~~~~~~~~~eaa~REl~EEt 109 (225)
.++++++ .+. +| +|||+||+.....+||.|.|| ||+++++|++. ..+.+.++..||+||++|||
T Consensus 9 ~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fP-GG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~ 87 (232)
T 3qsj_A 9 KAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFP-GGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEI 87 (232)
T ss_dssp EEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECS-EEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECC-ceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHh
Confidence 4444444 443 23 899999998777789999999 99999988720 00111225899999999999
Q ss_pred CCCCCCCC-------------------------------------CCceeeeeEEEEEcCCCCCCcceEE-EEEEEEecC
Q 027303 110 GICAEDVP-------------------------------------VDEFTPLGRILYKAPSDGKWGEHEL-DYLLFIVRD 151 (225)
Q Consensus 110 Gl~~~~i~-------------------------------------~~~l~~l~~~~y~~~~~~~~~e~~~-~~v~~~~~~ 151 (225)
|+.+..-. .+.|.+.. ++..|.... +.+ +++|++..+
T Consensus 88 Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~a--rWiTP~~~~---rRfdT~FFla~lp 162 (232)
T 3qsj_A 88 GWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIG--RFVTPPTQP---VRFDTRFFLCVGQ 162 (232)
T ss_dssp SCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEE--EEECCTTSS---SEEEEEEEEEECS
T ss_pred CceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeE--EEcCCcCCc---eeEEEEEEEEECC
Confidence 99864210 11122222 333333221 333 355555544
Q ss_pred cc--ccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 027303 152 VS--VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 200 (225)
Q Consensus 152 ~~--~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l 200 (225)
.. ...+++|+.++.|++++++.+....+.. .+.|.-...+.++.
T Consensus 163 q~~~v~~d~~E~~~~~W~~p~eal~~~~~G~i-----~L~pPT~~~L~~L~ 208 (232)
T 3qsj_A 163 HLGEPRLHGAELDAALWTPARDMLTRIQSGEL-----PAVRPTIAVLKALV 208 (232)
T ss_dssp SCCCCCCCSSSEEEEEEEEHHHHHHHHHTTSS-----CCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCceEEEEEEcHHHHHHHHHcCCc-----eechhHHHHHHHHH
Confidence 32 2567899999999999999999888743 66776777776663
No 73
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=99.30 E-value=6.5e-13 Score=111.95 Aligned_cols=94 Identities=17% Similarity=0.069 Sum_probs=62.6
Q ss_pred eEEEeeecCCCCCCCCCeeeccccCCCCCC-ChhhhhhhhcHHHHHHHHHHhHhCCCCCCCCCCceeeeeEEEEEcCCCC
Q 027303 57 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDG 135 (225)
Q Consensus 57 ~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE-s~~~~~~~~~~~eaa~REl~EEtGl~~~~i~~~~l~~l~~~~y~~~~~~ 135 (225)
++|+++|. +|.|++| ||++++|| + +++||+||++||||+.+....+ ..+..+. ..+..
T Consensus 66 ~~ll~~r~------~g~w~lP-GG~ve~gE~t---------~~eaa~REl~EEtGl~~~~~~l---~~l~~~~-~~~~~- 124 (217)
T 2xsq_A 66 AILMQMRF------DGRLGFP-GGFVDTQDRS---------LEDGLNRELREELGEAAAAFRV---ERTDYRS-SHVGS- 124 (217)
T ss_dssp EEEEEEET------TSCEECS-EEECCTTCSS---------HHHHHHHHHHHHHCGGGGGCCC---CGGGEEE-EEECS-
T ss_pred cEEEEEcc------CCeEECC-ceecCCCCCC---------HHHHHHHHHHHHHCCCCcccee---EEEEEEe-ecCCC-
Confidence 56776664 6899999 99999999 9 7999999999999999873222 2222221 11111
Q ss_pred CCcceEEEEEEEEecC-ccc----------cCCccccccEEEeCHHHHH
Q 027303 136 KWGEHELDYLLFIVRD-VSV----------NPNPDEVAEYKYVNREQLK 173 (225)
Q Consensus 136 ~~~e~~~~~v~~~~~~-~~~----------~~~~~Ev~~~~Wv~~eel~ 173 (225)
..+...++|.+... ... .....|+.++.|+|++++.
T Consensus 125 --~~~~~~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~ 171 (217)
T 2xsq_A 125 --GPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR 171 (217)
T ss_dssp --SSSEEEEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred --CCeEEEEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhh
Confidence 11445566666542 112 2235688999999999875
No 74
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.28 E-value=1.1e-11 Score=108.89 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=37.9
Q ss_pred eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCCCC
Q 027303 57 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 113 (225)
Q Consensus 57 ~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~ 113 (225)
++||++|.. .|.|.+| ||++++||+ +.+||+||++||||+.+
T Consensus 140 ~vLl~~r~~-----~g~W~lP-GG~Ve~GEs---------~~eAA~REl~EETGl~~ 181 (292)
T 1q33_A 140 QFVAIKRKD-----CGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSL 181 (292)
T ss_dssp EEEEEECTT-----TCSEECC-CEECCTTCC---------HHHHHHHHHHHHHSCGG
T ss_pred EEEEEEecC-----CCcEeCC-CcccCCCCC---------HHHHHHHHHHHHhCCcc
Confidence 599998864 3899998 999999999 89999999999999984
No 75
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=98.71 E-value=5.6e-08 Score=86.37 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=69.6
Q ss_pred eEEEEEEEeCCCeEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHh-CCCCCCCCCCceee
Q 027303 45 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDEL-GICAEDVPVDEFTP 123 (225)
Q Consensus 45 ~~v~v~i~d~~g~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEt-Gl~~~~i~~~~l~~ 123 (225)
.++++++.+ +|+|||+ . ..| |.+| ||.+ +++ ..++|+||++||+ |+.+.. ..
T Consensus 184 ~~vgaii~~-~g~vLL~--~-----~~G-W~LP-G~~~--~~~---------~~~~a~RE~~EEttGl~v~~------~~ 236 (321)
T 3rh7_A 184 IRLGAVLEQ-QGAVFLA--G-----NET-LSLP-NCTV--EGG---------DPARTLAAYLEQLTGLNVTI------GF 236 (321)
T ss_dssp EEEEEEEES-SSCEEEB--C-----SSE-EBCC-EEEE--SSS---------CHHHHHHHHHHHHHSSCEEE------EE
T ss_pred ceEEEEEEE-CCEEEEe--e-----CCC-ccCC-cccC--CCC---------hhHHHHHHHHHHhcCCEEee------ce
Confidence 455666554 6999998 2 137 9999 8865 444 2469999999997 999872 22
Q ss_pred eeEEEEEcCCCCCCcceEEEEEEEEecCccccCCccccccEEEeCHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 027303 124 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 201 (225)
Q Consensus 124 l~~~~y~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~Ev~~~~Wv~~eel~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 201 (225)
+..+ |..+.. +....+|.+..... +..+++|+++++|+.+ ....|-.+..+++|+.
T Consensus 237 L~~v-~~~~~~-----~~~~i~f~~~~~~g------~~~e~~~f~~~elp~~----------~~~~~~~~~~L~~y~~ 292 (321)
T 3rh7_A 237 LYSV-YEDKSD-----GRQNIVYHALASDG------APRQGRFLRPAELAAA----------KFSSSATADIINRFVL 292 (321)
T ss_dssp EEEE-EECTTT-----CCEEEEEEEEECSS------CCSSSEEECHHHHTTC----------EESSHHHHHHHHHHHH
T ss_pred EEEE-EEcCCC-----ceEEEEEEEEeCCC------CeeeeEEECHHHCCCc----------ccCCHHHHHHHHHHHH
Confidence 3222 444321 22233455553211 1378999999999764 2346888899999954
No 76
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=98.63 E-value=3.6e-08 Score=81.67 Aligned_cols=53 Identities=19% Similarity=0.115 Sum_probs=42.1
Q ss_pred ceeEEEEEEEeCC-C----------eEEEeeecCCCCCCCCCeeeccccCCCCCC-ChhhhhhhhcHHHHHHHHHHhHhC
Q 027303 43 LHRAFSVFLFNSK-Y----------ELLLQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELG 110 (225)
Q Consensus 43 ~h~~v~v~i~d~~-g----------~vLL~rRs~~k~~~pg~W~~p~gG~ve~gE-s~~~~~~~~~~~eaa~REl~EEtG 110 (225)
+..+++++++.++ + .+|+|.|- .|.|+|| ||++|+|| | +++|+.||+.||+|
T Consensus 20 ~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R~------~G~weFP-GGkVe~gE~t---------~e~aL~REl~EElg 83 (214)
T 3kvh_A 20 WSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRF------DGLLGFP-GGFVDRRFWS---------LEDGLNRVLGLGLG 83 (214)
T ss_dssp CEEEEEEEEEEEEEEEETTTEEEEEEEEEEEET------TSCEECS-EEEECTTTCC---------HHHHHHHSCCSCC-
T ss_pred ccEeeEEEEEcCCccccccccchhheEEEeeee------CCEEeCC-CccCCCCCCC---------HHHHHHHHHHHhhC
Confidence 5668888887653 2 36777664 4999999 99999999 7 89999999999999
Q ss_pred C
Q 027303 111 I 111 (225)
Q Consensus 111 l 111 (225)
+
T Consensus 84 ~ 84 (214)
T 3kvh_A 84 C 84 (214)
T ss_dssp -
T ss_pred C
Confidence 7
No 77
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.48 E-value=2.4e-07 Score=77.22 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=46.4
Q ss_pred cCCcceeEEEEEEEeCCC--eEEEeeecCCCCCCCCCeeeccccCCCCCCChhhhhhhhcHHHHHHHHHHhHhCC
Q 027303 39 SLNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 111 (225)
Q Consensus 39 ~~~~~h~~v~v~i~d~~g--~vLL~rRs~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl 111 (225)
+.+....+.++++.+..+ +|||.|+.. +.|.+| ||++++||+ +++|+.|||.||+|+
T Consensus 54 ~~g~R~sV~avil~~~~~~phVLLlq~~~------~~f~LP-GGkle~gE~---------~~eaL~REL~EELg~ 112 (208)
T 3bho_A 54 KIGMRRTVEGVLIVHEHRLPHVLLLQLGT------TFFKLP-GGELNPGED---------EVEGLKRLMTEILGR 112 (208)
T ss_dssp HHCSEEEEEEEEEEEETTEEEEEEEEEET------TEEECS-EEECCTTCC---------HHHHHHHHHHHHHCC
T ss_pred hhCCceEEEEEEEEcCCCCcEEEEEEcCC------CcEECC-CcccCCCCC---------HHHHHHHHHHHHhCC
Confidence 355566677777776555 799888742 489999 999999999 799999999999996
No 78
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=33.05 E-value=20 Score=18.88 Aligned_cols=13 Identities=8% Similarity=0.327 Sum_probs=10.9
Q ss_pred EEEcCCCCEeeee
Q 027303 14 ILVDENDRVVGHE 26 (225)
Q Consensus 14 ~~~d~~~~~~g~~ 26 (225)
.|||.+|+++...
T Consensus 8 ~IYD~~g~~i~~l 20 (26)
T 2v2f_A 8 KIYDNKNQLIADL 20 (26)
T ss_pred EEEeCCCCEeeec
Confidence 6899999988865
No 79
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=28.10 E-value=14 Score=19.56 Aligned_cols=12 Identities=33% Similarity=1.273 Sum_probs=9.1
Q ss_pred HHHHHHHhhhcc
Q 027303 198 NFLFKWWDHLEK 209 (225)
Q Consensus 198 ~~l~~~~~~~~~ 209 (225)
-+|-+|||+.++
T Consensus 14 pwlvgwwdqfkr 25 (26)
T 1loi_A 14 PWLVGWWDQFKR 25 (26)
T ss_dssp TTGGGGHHHHTC
T ss_pred chhhhhHHHhcc
Confidence 367789998865
No 80
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=27.15 E-value=33 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=22.4
Q ss_pred cccCccceEEEEcCCCCEeeeeeccccc
Q 027303 5 FVIDTFDRCILVDENDRVVGHENKYNCH 32 (225)
Q Consensus 5 ~~~~~~E~~~~~d~~~~~~g~~~r~~~~ 32 (225)
|....-..++++|++|+++|..++..+.
T Consensus 124 m~~~~~~~lpVvd~~g~~vGiit~~dil 151 (180)
T 3sl7_A 124 LLETKFRRLPVVDADGKLIGILTRGNVV 151 (180)
T ss_dssp HTTSTTCEEEEECTTCBEEEEEEHHHHH
T ss_pred HHHcCCCEEEEECCCCeEEEEEEHHHHH
Confidence 3445556799999999999999998764
No 81
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=21.54 E-value=63 Score=24.02 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCEeeeeeccccc
Q 027303 11 DRCILVDENDRVVGHENKYNCH 32 (225)
Q Consensus 11 E~~~~~d~~~~~~g~~~r~~~~ 32 (225)
--++++|++|+++|..+.+.+.
T Consensus 50 ~~~pVvd~~g~lvGiit~~Dll 71 (170)
T 4esy_A 50 GCAPVVDQNGHLVGIITESDFL 71 (170)
T ss_dssp SEEEEECTTSCEEEEEEGGGGG
T ss_pred eEEEEEcCCccEEEEEEHHHHH
Confidence 3588999999999999988654
No 82
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=21.04 E-value=38 Score=23.80 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=20.3
Q ss_pred CccceEEEEcCCCCEeeeeeccccc
Q 027303 8 DTFDRCILVDENDRVVGHENKYNCH 32 (225)
Q Consensus 8 ~~~E~~~~~d~~~~~~g~~~r~~~~ 32 (225)
.....++++|++|+++|..++..+.
T Consensus 96 ~~~~~l~Vvd~~g~~~Giit~~dll 120 (133)
T 2ef7_A 96 FNIRHLPVVDDKGNLKGIISIRDIT 120 (133)
T ss_dssp HTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred cCCCEEEEECCCCeEEEEEEHHHHH
Confidence 3456789999999999999998654
No 83
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=20.63 E-value=39 Score=24.13 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=20.0
Q ss_pred CccceEEEEcCCCCEeeeeeccccc
Q 027303 8 DTFDRCILVDENDRVVGHENKYNCH 32 (225)
Q Consensus 8 ~~~E~~~~~d~~~~~~g~~~r~~~~ 32 (225)
.....++++|++|+++|..++..+.
T Consensus 99 ~~~~~l~Vvd~~g~~~Giit~~dll 123 (141)
T 2rih_A 99 HNIRHVVVVNKNGELVGVLSIRDLC 123 (141)
T ss_dssp HTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred cCCeEEEEEcCCCcEEEEEEHHHHH
Confidence 3446789999999999999988654
No 84
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=20.31 E-value=40 Score=24.11 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=20.2
Q ss_pred CccceEEEEcCCCCEeeeeeccccc
Q 027303 8 DTFDRCILVDENDRVVGHENKYNCH 32 (225)
Q Consensus 8 ~~~E~~~~~d~~~~~~g~~~r~~~~ 32 (225)
..-..++++|++|+++|-.++..+.
T Consensus 98 ~~~~~~~Vvd~~g~lvGiit~~Dil 122 (136)
T 3lfr_A 98 NHNHMAIVIDEYGGVAGLVTIEDVL 122 (136)
T ss_dssp HTCCEEEEECTTSCEEEEEEHHHHH
T ss_pred cCCeEEEEEeCCCCEEEEEEHHHHH
Confidence 3446788999999999999998654
Done!