Query 027304
Match_columns 225
No_of_seqs 190 out of 1139
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:56:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12999 PRKCSH-like: Glucosid 100.0 2.1E-30 4.5E-35 221.0 5.3 121 9-133 2-129 (176)
2 KOG2397 Protein kinase C subst 99.8 6.7E-20 1.4E-24 175.1 6.9 104 28-131 28-132 (480)
3 PF00057 Ldl_recept_a: Low-den 99.0 5.1E-10 1.1E-14 73.5 3.3 35 76-114 2-36 (37)
4 cd00112 LDLa Low Density Lipop 98.9 5.4E-10 1.2E-14 72.3 2.3 32 41-73 3-34 (35)
5 cd00112 LDLa Low Density Lipop 98.9 5.3E-10 1.1E-14 72.3 2.3 33 77-113 1-33 (35)
6 PF00057 Ldl_recept_a: Low-den 98.9 7.4E-10 1.6E-14 72.7 2.8 33 40-73 4-36 (37)
7 smart00192 LDLa Low-density li 98.8 2.7E-09 5.7E-14 68.0 2.6 32 77-112 2-33 (33)
8 smart00192 LDLa Low-density li 98.7 1.2E-08 2.5E-13 65.1 2.6 29 42-71 5-33 (33)
9 KOG1215 Low-density lipoprotei 98.1 3.9E-06 8.5E-11 84.9 5.0 82 28-113 202-292 (877)
10 KOG1215 Low-density lipoprotei 98.0 3.6E-06 7.8E-11 85.2 3.6 70 41-113 140-251 (877)
11 PF12999 PRKCSH-like: Glucosid 97.9 8.1E-06 1.8E-10 70.4 2.7 46 79-127 35-83 (176)
12 KOG3509 Basement membrane-spec 93.9 0.066 1.4E-06 56.5 4.5 71 40-114 33-109 (964)
13 KOG2397 Protein kinase C subst 93.5 0.079 1.7E-06 52.1 3.9 38 41-78 80-121 (480)
14 KOG1219 Uncharacterized conser 86.1 1.8 4E-05 50.4 6.7 29 193-221 3995-4023(4289)
15 KOG3509 Basement membrane-spec 70.5 3 6.6E-05 44.5 2.4 60 52-115 3-66 (964)
16 PF05393 Hum_adeno_E3A: Human 63.4 7.5 0.00016 30.9 2.8 35 191-225 31-67 (94)
17 PF14610 DUF4448: Protein of u 60.0 6.1 0.00013 33.6 2.0 32 191-222 156-187 (189)
18 PRK09459 pspG phage shock prot 54.6 10 0.00022 29.1 2.1 23 203-225 51-73 (76)
19 PF15102 TMEM154: TMEM154 prot 49.8 9.9 0.00021 32.4 1.6 20 203-222 71-90 (146)
20 PF01102 Glycophorin_A: Glycop 49.2 8.2 0.00018 31.7 1.0 27 192-218 68-94 (122)
21 PF14316 DUF4381: Domain of un 46.2 11 0.00024 30.8 1.3 8 192-199 22-29 (146)
22 PTZ00382 Variant-specific surf 39.4 16 0.00034 28.6 1.1 24 191-215 69-92 (96)
23 PHA02637 TNF-alpha-receptor-li 38.7 1.1E+02 0.0023 25.7 5.9 19 63-82 55-73 (127)
24 TIGR01478 STEVOR variant surfa 32.7 25 0.00054 33.1 1.5 29 192-220 262-290 (295)
25 PTZ00370 STEVOR; Provisional 32.6 25 0.00054 33.1 1.5 29 192-220 258-286 (296)
26 PF13974 YebO: YebO-like prote 31.0 44 0.00096 25.9 2.4 23 197-219 3-25 (80)
27 PF01299 Lamp: Lysosome-associ 30.8 20 0.00044 32.6 0.6 16 203-218 285-300 (306)
28 PF15145 DUF4577: Domain of un 30.7 17 0.00038 30.1 0.1 42 173-214 47-88 (128)
29 PF08693 SKG6: Transmembrane a 30.5 30 0.00065 23.5 1.2 19 195-213 15-33 (40)
30 PHA02662 ORF131 putative membr 30.1 83 0.0018 28.7 4.3 32 191-222 182-216 (226)
31 PHA02947 S-S bond formation pa 29.3 72 0.0016 28.9 3.7 22 201-222 187-208 (215)
32 PF12669 P12: Virus attachment 29.0 47 0.001 23.7 2.1 9 204-212 7-15 (58)
33 PRK10040 hypothetical protein; 27.5 94 0.002 22.3 3.3 11 40-50 32-42 (52)
34 PF11120 DUF2636: Protein of u 27.2 55 0.0012 24.2 2.2 24 198-221 6-32 (62)
35 KOG3658 Tumor necrosis factor- 24.3 79 0.0017 33.3 3.4 36 56-96 544-580 (764)
36 PF03273 Baculo_gp64: Baculovi 24.0 33 0.00072 34.3 0.7 54 157-218 433-497 (498)
37 KOG0860 Synaptobrevin/VAMP-lik 21.8 49 0.0011 27.3 1.2 23 189-211 88-110 (116)
38 PF06679 DUF1180: Protein of u 20.7 81 0.0017 27.2 2.4 17 206-222 106-122 (163)
39 PHA02955 hypothetical protein; 20.6 87 0.0019 28.3 2.6 29 194-222 180-208 (213)
40 PF04885 Stig1: Stigma-specifi 20.4 2.1E+02 0.0046 24.0 4.7 28 64-96 76-108 (136)
41 PF10491 Nrf1_DNA-bind: NLS-bi 20.1 76 0.0016 28.7 2.1 17 1-17 129-145 (214)
42 PF11694 DUF3290: Protein of u 20.1 66 0.0014 27.1 1.7 32 191-222 16-47 (149)
No 1
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=99.96 E-value=2.1e-30 Score=220.99 Aligned_cols=121 Identities=52% Similarity=0.976 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhhhcccCccccCCCCCCCCCCC---CceecCCCCce-ecCCCCCCCCCCCCCCCCCCCCCCCCCCeeec
Q 027304 9 LIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSK---EVIKCKDGSKS-FTRDRLNDNFCDCIDGTDEPGTSACPAGKFYC 84 (225)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~Gv~p~~~~~~~p---~~F~C~dGs~C-Ip~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C 84 (225)
++|++++.++++.+ .+.++||+|+.+++|.| +.|.|.+|++- |+.++++|+++||+|||||++|++|+.+.|||
T Consensus 2 ~~~~~~~~~~~~~~--~~~~~GV~p~~~~~Y~~~~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTsAC~~~~FyC 79 (176)
T PF12999_consen 2 LLPLIALSLLSASA--SSRIRGVSPSDQHLYEPSENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTSACSNGKFYC 79 (176)
T ss_pred cHHHHHHHHHHHhc--cCCCCCCCHHHHHHcCCCCCCceEecCCCCceecHHHccCcceeCCCCCCccccccCcCceEee
Confidence 67888777776665 56899999999999986 48999999877 99999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCccCCCCC---CCCCCCCCCCCCCCCCccccCCcchhhc
Q 027304 85 GNVGSTPQFIFSSRVNDRICD---CCDGSDEYDSSIKCPNTCVMGGNIEYKA 133 (225)
Q Consensus 85 ~Ngg~~~~CI~~s~VCDGv~D---C~DGSDE~~~~~~Cpn~C~~~g~~~~~~ 133 (225)
.|.||.|..|+.++|.||++| |+||||| +...|||+|...++.+...
T Consensus 80 ~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE--~~~~C~N~C~e~~~~~~~~ 129 (176)
T PF12999_consen 80 ENKGHIPRYIPSSRVNDGICDYDICCDGSDE--SGGKCPNTCAELGKEYREE 129 (176)
T ss_pred ccCCCCCceeehhhhcCCcCcccccCCCCCC--CCCCCccHHHHHHHHHHHH
Confidence 999999999999999999999 9999999 4568999999999866544
No 2
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]
Probab=99.80 E-value=6.7e-20 Score=175.11 Aligned_cols=104 Identities=54% Similarity=1.039 Sum_probs=94.3
Q ss_pred cccCCCCCCCCCC-CCceecCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCCcccccCCCccCCCCCC
Q 027304 28 LLGVHPLDEKYFS-KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDC 106 (225)
Q Consensus 28 ~~Gv~p~~~~~~~-p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC 106 (225)
..+++..+..+|. +..|.|.+|++-|+.+++.|+++||.|||||+++++||+++|||.|.|+.|..|+.+.|-||++||
T Consensus 28 ~v~~~~~~~~~y~as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~~p~~i~ssrV~DGICDC 107 (480)
T KOG2397|consen 28 GVALSIENLYLYDASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDC 107 (480)
T ss_pred ccccccccccccccccceeeccCCcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCCCceeeechhccCccccc
Confidence 4444455666554 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccCCcchh
Q 027304 107 CDGSDEYDSSIKCPNTCVMGGNIEY 131 (225)
Q Consensus 107 ~DGSDE~~~~~~Cpn~C~~~g~~~~ 131 (225)
+|||||..+++.|||+|..+|.++.
T Consensus 108 CDgSDE~~Sgv~c~ntC~e~gR~~r 132 (480)
T KOG2397|consen 108 CDGSDEYLSGVDCPNTCIELGRAAR 132 (480)
T ss_pred ccCCCCccCCCCCcchHHHHHHHHH
Confidence 9999999999999999999997663
No 3
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.96 E-value=5.1e-10 Score=73.49 Aligned_cols=35 Identities=57% Similarity=0.914 Sum_probs=32.5
Q ss_pred CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
.|+.++|+|.++ .||+..++|||+.||.|||||.+
T Consensus 2 ~C~~~~f~C~~~----~CI~~~~~CDg~~DC~dgsDE~~ 36 (37)
T PF00057_consen 2 TCPPGEFRCGNG----QCIPKSWVCDGIPDCPDGSDEQN 36 (37)
T ss_dssp SSSTTEEEETTS----SEEEGGGTTSSSCSSSSSTTTSS
T ss_pred cCcCCeeEcCCC----CEEChHHcCCCCCCCCCCccccc
Confidence 588999999998 69999999999999999999963
No 4
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.92 E-value=5.4e-10 Score=72.26 Aligned_cols=32 Identities=28% Similarity=0.577 Sum_probs=29.7
Q ss_pred CCceecCCCCceecCCCCCCCCCCCCCCCCCCC
Q 027304 41 KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG 73 (225)
Q Consensus 41 p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~ 73 (225)
+++|+|.++ +||+..++|||+.||+|||||.+
T Consensus 3 ~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~~ 34 (35)
T cd00112 3 PNEFRCANG-RCIPSSWVCDGEDDCGDGSDEEN 34 (35)
T ss_pred CCeEEcCCC-CeeCHHHcCCCccCCCCCccccc
Confidence 478999997 79999999999999999999975
No 5
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.92 E-value=5.3e-10 Score=72.29 Aligned_cols=33 Identities=52% Similarity=0.759 Sum_probs=31.0
Q ss_pred CCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 027304 77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY 113 (225)
Q Consensus 77 C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~ 113 (225)
|++++|+|.++ .||+..++|||+.||.|||||.
T Consensus 1 C~~~~f~C~~~----~Ci~~~~~CDg~~DC~dgsDE~ 33 (35)
T cd00112 1 CPPNEFRCANG----RCIPSSWVCDGEDDCGDGSDEE 33 (35)
T ss_pred CCCCeEEcCCC----CeeCHHHcCCCccCCCCCcccc
Confidence 67789999997 8999999999999999999997
No 6
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.91 E-value=7.4e-10 Score=72.73 Aligned_cols=33 Identities=27% Similarity=0.629 Sum_probs=30.4
Q ss_pred CCCceecCCCCceecCCCCCCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG 73 (225)
Q Consensus 40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~ 73 (225)
.+++|+|.++ .||+..|+|||+.||.|||||.+
T Consensus 4 ~~~~f~C~~~-~CI~~~~~CDg~~DC~dgsDE~~ 36 (37)
T PF00057_consen 4 PPGEFRCGNG-QCIPKSWVCDGIPDCPDGSDEQN 36 (37)
T ss_dssp STTEEEETTS-SEEEGGGTTSSSCSSSSSTTTSS
T ss_pred cCCeeEcCCC-CEEChHHcCCCCCCCCCCccccc
Confidence 4689999998 59999999999999999999975
No 7
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.81 E-value=2.7e-09 Score=68.02 Aligned_cols=32 Identities=53% Similarity=0.909 Sum_probs=29.8
Q ss_pred CCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCC
Q 027304 77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE 112 (225)
Q Consensus 77 C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE 112 (225)
|+..+|+|.++ .||+..++|||+.||.|||||
T Consensus 2 C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNG----RCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCC----CEECchhhCCCcCcCcCCCCC
Confidence 66779999987 799999999999999999998
No 8
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.69 E-value=1.2e-08 Score=65.07 Aligned_cols=29 Identities=31% Similarity=0.675 Sum_probs=27.3
Q ss_pred CceecCCCCceecCCCCCCCCCCCCCCCCC
Q 027304 42 EVIKCKDGSKSFTRDRLNDNFCDCIDGTDE 71 (225)
Q Consensus 42 ~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE 71 (225)
++|+|.++ .||+..++|||+.||+|||||
T Consensus 5 ~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 5 GEFQCDNG-RCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CeEECCCC-CEECchhhCCCcCcCcCCCCC
Confidence 48999987 699999999999999999998
No 9
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=98.06 E-value=3.9e-06 Score=84.94 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=68.0
Q ss_pred cccCCCCCCCCCC-----CCceecCCCCceecCCCCCCCCCCCCCCCCCC--CC--CCCCCCeeecCCCCCCcccccCCC
Q 027304 28 LLGVHPLDEKYFS-----KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEP--GT--SACPAGKFYCGNVGSTPQFIFSSR 98 (225)
Q Consensus 28 ~~Gv~p~~~~~~~-----p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~--~c--~~C~~~~F~C~Ngg~~~~CI~~s~ 98 (225)
..|.++.....|. .+.++|.++..||...+.|||..||.|++||. ++ ..|...++.|.++ .|++..+
T Consensus 202 ~~~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~----~~~~~~~ 277 (877)
T KOG1215|consen 202 ADDYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADG----DCSDRQK 277 (877)
T ss_pred ccccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCC----CCccceE
Confidence 4455566555542 36789988678999999999999999999994 32 2677889999888 7999999
Q ss_pred ccCCCCCCCCCCCCC
Q 027304 99 VNDRICDCCDGSDEY 113 (225)
Q Consensus 99 VCDGv~DC~DGSDE~ 113 (225)
.|||..||+||+||.
T Consensus 278 ~~~g~~d~pdg~de~ 292 (877)
T KOG1215|consen 278 LCDGDLDCPDGLDED 292 (877)
T ss_pred EecCccCCCCccccc
Confidence 999999999999997
No 10
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=98.01 E-value=3.6e-06 Score=85.19 Aligned_cols=70 Identities=34% Similarity=0.576 Sum_probs=56.3
Q ss_pred CCceecCCC-CceecCCCCCCCCCCCCCCCCCCCCCC------------------------CC-----------------
Q 027304 41 KEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPGTSA------------------------CP----------------- 78 (225)
Q Consensus 41 p~~F~C~dG-s~CIp~s~vCDG~~DC~DGSDE~~c~~------------------------C~----------------- 78 (225)
..+|.|..+ .+|||..|+|||..||.||+||..+.. |.
T Consensus 140 ~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~ 219 (877)
T KOG1215|consen 140 LDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTDDSR 219 (877)
T ss_pred CCCCCCcCccccCCCCceeCCCCCccccchhhhcccccccCccccccccceeeeecCcccccccccccccCcccccCCcc
Confidence 468999932 389999999999999999999987530 10
Q ss_pred CCeeecCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 027304 79 AGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY 113 (225)
Q Consensus 79 ~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~ 113 (225)
...++|..++ .||..++.|||..||.|++||.
T Consensus 220 ~~~~~c~g~~---~~i~~~~~~Dg~~dc~~~~de~ 251 (877)
T KOG1215|consen 220 IEVTRCDGSS---RCILISEVCDGPRDCVDGPDEG 251 (877)
T ss_pred eeEEEecCCC---cEEeehhccCCCcccccCCcCc
Confidence 2456666542 7999999999999999999994
No 11
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=97.87 E-value=8.1e-06 Score=70.43 Aligned_cols=46 Identities=43% Similarity=0.733 Sum_probs=35.2
Q ss_pred CCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCc---cccCC
Q 027304 79 AGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNT---CVMGG 127 (225)
Q Consensus 79 ~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~~~~Cpn~---C~~~g 127 (225)
++.|+|-++.. .-|+.++++|+++||+|||||.. +..|++. |.+.|
T Consensus 35 ~~~f~Cl~~~~--~~I~~~~iNDdyCDC~DGSDEPG-TsAC~~~~FyC~N~g 83 (176)
T PF12999_consen 35 NGKFTCLDGSK--IVIPFSQINDDYCDCPDGSDEPG-TSACSNGKFYCENKG 83 (176)
T ss_pred CCceEecCCCC--ceecHHHccCcceeCCCCCCccc-cccCcCceEeeccCC
Confidence 46799998842 34899999999999999999974 3467653 55555
No 12
>KOG3509 consensus Basement membrane-specific heparan sulfate proteoglycan (HSPG) core protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.066 Score=56.54 Aligned_cols=71 Identities=25% Similarity=0.372 Sum_probs=61.9
Q ss_pred CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCCC------CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS------ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY 113 (225)
Q Consensus 40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~------~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~ 113 (225)
+|+++.|.++ ++....+.||...+|.+++++.++. .|.+..+.|.+- -++.+.+..|||.+||.|+++|.
T Consensus 33 ~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~---~~~~~~~~~~~g~~~~~~~~~~~ 108 (964)
T KOG3509|consen 33 SPNEFKCNNP-RCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRDR---LRCNPQSFQCDGTNDCKDGSDEV 108 (964)
T ss_pred CcchhccCCc-cccCchhhhccccccCCCCCcCCccccccccccCCcccccccc---hhcCCccccccCCCCCCccchhc
Confidence 4789999998 7999999999999999999887742 477788999876 37899999999999999999997
Q ss_pred C
Q 027304 114 D 114 (225)
Q Consensus 114 ~ 114 (225)
.
T Consensus 109 ~ 109 (964)
T KOG3509|consen 109 G 109 (964)
T ss_pred c
Confidence 5
No 13
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]
Probab=93.51 E-value=0.079 Score=52.15 Aligned_cols=38 Identities=37% Similarity=0.777 Sum_probs=30.7
Q ss_pred CCceecCCCC---ceecCCCCCCCCCCCCCCCCCCCCC-CCC
Q 027304 41 KEVIKCKDGS---KSFTRDRLNDNFCDCIDGTDEPGTS-ACP 78 (225)
Q Consensus 41 p~~F~C~dGs---~CIp~s~vCDG~~DC~DGSDE~~c~-~C~ 78 (225)
.++|+|.+.+ .-|+.+.+.||.+||-|||||..++ .|+
T Consensus 80 ngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~Sgv~c~ 121 (480)
T KOG2397|consen 80 NGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLSGVDCP 121 (480)
T ss_pred CCceeeeecCCCceeeechhccCcccccccCCCCccCCCCCc
Confidence 4689998643 5789999999999999999998753 344
No 14
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=86.06 E-value=1.8 Score=50.42 Aligned_cols=29 Identities=17% Similarity=0.599 Sum_probs=19.4
Q ss_pred ceeehhhHHHHHHHHHHHHHhhchhhccc
Q 027304 193 VKMVVILQSFVIIFLVFLWIMHHSVRSKR 221 (225)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
+-.++|+=.+++|++|+||..|+..+.|.
T Consensus 3995 li~I~V~l~~ifilvvlf~~crKk~~rkk 4023 (4289)
T KOG1219|consen 3995 LIIIIVLLALIFILVVLFWKCRKKNSRKK 4023 (4289)
T ss_pred eeehhHHHHHHHHHHHHHHhhhhhccCCc
Confidence 33444556677778888888887666554
No 15
>KOG3509 consensus Basement membrane-specific heparan sulfate proteoglycan (HSPG) core protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.47 E-value=3 Score=44.51 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=53.0
Q ss_pred eecCCCCCCCCCCCCCCCCCCCC----CCCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 027304 52 SFTRDRLNDNFCDCIDGTDEPGT----SACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS 115 (225)
Q Consensus 52 CIp~s~vCDG~~DC~DGSDE~~c----~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~ 115 (225)
|......|++..||.+.+|+.+. ++|.++++.|.|+ ++....+.||...+|.++|++...
T Consensus 3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 66 (964)
T KOG3509|consen 3 CVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCNNP----RCVQPEALLDADSTCGPNSTPSGC 66 (964)
T ss_pred hhhhhhhhccchhhHhhcccCCCccccccCCcchhccCCc----cccCchhhhccccccCCCCCcCCc
Confidence 66677899999999999999884 3688999999998 899999999999999999987654
No 16
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=63.42 E-value=7.5 Score=30.86 Aligned_cols=35 Identities=29% Similarity=0.493 Sum_probs=19.8
Q ss_pred ccceeehhhHHHHHHHHHHHHHhhchhh--ccccccC
Q 027304 191 ADVKMVVILQSFVIIFLVFLWIMHHSVR--SKRRHSR 225 (225)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 225 (225)
.||-|-+..=.+++|++|++|+.=+.+| +||.-||
T Consensus 31 ~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPIYr 67 (94)
T PF05393_consen 31 PNLGMWFLVICGIFILLVILWFVCCKKRKRSRRPIYR 67 (94)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Confidence 5666654444555577777777655444 4444343
No 17
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=60.04 E-value=6.1 Score=33.57 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=25.0
Q ss_pred ccceeehhhHHHHHHHHHHHHHhhchhhcccc
Q 027304 191 ADVKMVVILQSFVIIFLVFLWIMHHSVRSKRR 222 (225)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (225)
....++|.|=+++++++++++++..+.|.+||
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~~R~~Rr 187 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFWNRKKRR 187 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhheeecccee
Confidence 44588888998888888888888777776665
No 18
>PRK09459 pspG phage shock protein G; Reviewed
Probab=54.60 E-value=10 Score=29.14 Aligned_cols=23 Identities=13% Similarity=0.416 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhchhhccccccC
Q 027304 203 VIIFLVFLWIMHHSVRSKRRHSR 225 (225)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~ 225 (225)
++..+++.|+.|...+.+.|||+
T Consensus 51 Lil~~v~vW~~r~~~~~~~~~y~ 73 (76)
T PRK09459 51 LLLAVVVVWVIRAIKAPKVPRYQ 73 (76)
T ss_pred HHHHHHHHHHHHHhhcccccccc
Confidence 45567888999998887777775
No 19
>PF15102 TMEM154: TMEM154 protein family
Probab=49.78 E-value=9.9 Score=32.37 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhchhhcccc
Q 027304 203 VIIFLVFLWIMHHSVRSKRR 222 (225)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ 222 (225)
|+++++++.+..||.|+|++
T Consensus 71 LLl~vV~lv~~~kRkr~K~~ 90 (146)
T PF15102_consen 71 LLLSVVCLVIYYKRKRTKQE 90 (146)
T ss_pred HHHHHHHheeEEeecccCCC
Confidence 34444555555566666654
No 20
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.23 E-value=8.2 Score=31.73 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=13.1
Q ss_pred cceeehhhHHHHHHHHHHHHHhhchhh
Q 027304 192 DVKMVVILQSFVIIFLVFLWIMHHSVR 218 (225)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
|.=+.|+.=++++|++++||+-|+|.|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445555555665556665444333
No 21
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=46.22 E-value=11 Score=30.75 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=4.1
Q ss_pred cceeehhh
Q 027304 192 DVKMVVIL 199 (225)
Q Consensus 192 ~~~~~~~~ 199 (225)
|-.+++++
T Consensus 22 GWwll~~l 29 (146)
T PF14316_consen 22 GWWLLLAL 29 (146)
T ss_pred HHHHHHHH
Confidence 55555544
No 22
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=39.44 E-value=16 Score=28.60 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=9.9
Q ss_pred ccceeehhhHHHHHHHHHHHHHhhc
Q 027304 191 ADVKMVVILQSFVIIFLVFLWIMHH 215 (225)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (225)
.|.-+++++=+++++.+ ++|+|.+
T Consensus 69 agi~vg~~~~v~~lv~~-l~w~f~~ 92 (96)
T PTZ00382 69 AGISVAVVAVVGGLVGF-LCWWFVC 92 (96)
T ss_pred EEEEeehhhHHHHHHHH-HhheeEE
Confidence 45545444333333323 3344444
No 23
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=38.74 E-value=1.1e+02 Score=25.71 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCCCCCCCee
Q 027304 63 CDCIDGTDEPGTSACPAGKF 82 (225)
Q Consensus 63 ~DC~DGSDE~~c~~C~~~~F 82 (225)
.+|...+ ...|..|+++.|
T Consensus 55 ~~Ct~~t-~T~C~PCp~GTY 73 (127)
T PHA02637 55 RLCDIKT-NTQCTPCGSGTF 73 (127)
T ss_pred CcCCCCC-CcccccCCCCCe
Confidence 5666443 234556666554
No 24
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=32.67 E-value=25 Score=33.09 Aligned_cols=29 Identities=14% Similarity=0.541 Sum_probs=16.2
Q ss_pred cceeehhhHHHHHHHHHHHHHhhchhhcc
Q 027304 192 DVKMVVILQSFVIIFLVFLWIMHHSVRSK 220 (225)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
|.-..|+|=+.||..|+-.|+.|||.+|-
T Consensus 262 giaalvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33333444445555556667777766654
No 25
>PTZ00370 STEVOR; Provisional
Probab=32.55 E-value=25 Score=33.10 Aligned_cols=29 Identities=17% Similarity=0.526 Sum_probs=16.0
Q ss_pred cceeehhhHHHHHHHHHHHHHhhchhhcc
Q 027304 192 DVKMVVILQSFVIIFLVFLWIMHHSVRSK 220 (225)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
|.-..|.|=+.||..++..|+.|||.+|-
T Consensus 258 giaalvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 33333444444555556667777766654
No 26
>PF13974 YebO: YebO-like protein
Probab=31.03 E-value=44 Score=25.85 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHhhchhhc
Q 027304 197 VILQSFVIIFLVFLWIMHHSVRS 219 (225)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+++=++++++++.|.+.|-++|+
T Consensus 3 ~~~~~~lv~livWFFVnRaSvRA 25 (80)
T PF13974_consen 3 VSVLVLLVGLIVWFFVNRASVRA 25 (80)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhH
Confidence 44445555555555556666664
No 27
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=30.76 E-value=20 Score=32.60 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhchhh
Q 027304 203 VIIFLVFLWIMHHSVR 218 (225)
Q Consensus 203 ~~~~~~~~~~~~~~~~ 218 (225)
++|.|++++|.|||.|
T Consensus 285 vlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 285 VLIVLIAYLIGRRRSR 300 (306)
T ss_pred HHHHHHhheeEecccc
Confidence 3344445555555433
No 28
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=30.73 E-value=17 Score=30.10 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=30.8
Q ss_pred cCccccccccccccccccccceeehhhHHHHHHHHHHHHHhh
Q 027304 173 YAPVKLKSLRDLSFSLVFADVKMVVILQSFVIIFLVFLWIMH 214 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (225)
++|.-.++--.=+-+|.|-||-++.|.-+.|+-|+.|+.+-.
T Consensus 47 k~~~~~~~sg~g~~~lffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 47 KIPGTGTNSGNGSRSLFFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred hccccCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHheeec
Confidence 334444554455778899999999999998888888876643
No 29
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=30.55 E-value=30 Score=23.52 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=10.0
Q ss_pred eehhhHHHHHHHHHHHHHh
Q 027304 195 MVVILQSFVIIFLVFLWIM 213 (225)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~ 213 (225)
.+|++-+++|+.++.+.++
T Consensus 15 ~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 15 VGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEechHHHHHHHHHHhh
Confidence 4455556655555544444
No 30
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=30.15 E-value=83 Score=28.70 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=21.4
Q ss_pred ccc-eeehhhHH--HHHHHHHHHHHhhchhhcccc
Q 027304 191 ADV-KMVVILQS--FVIIFLVFLWIMHHSVRSKRR 222 (225)
Q Consensus 191 ~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 222 (225)
+|+ +..+++-+ +++||+++++.+||+.|-|=|
T Consensus 182 ~~~~~W~i~~~v~~i~~i~vv~i~~irR~i~lkYr 216 (226)
T PHA02662 182 GGTPPWTLLLAVAAVTVLGVVAVSLLRRALRIRFR 216 (226)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhheeee
Confidence 444 44444333 567888889999999887644
No 31
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=29.35 E-value=72 Score=28.88 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhchhhcccc
Q 027304 201 SFVIIFLVFLWIMHHSVRSKRR 222 (225)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ 222 (225)
++++||+++++.+||+.|-|=|
T Consensus 187 ~i~~i~~i~i~~irR~i~lky~ 208 (215)
T PHA02947 187 IILIIFVIAICSIKRKINLKYR 208 (215)
T ss_pred HHHHHHHHHHHHHHHHheeeEe
Confidence 4556777888999998887643
No 32
>PF12669 P12: Virus attachment protein p12 family
Probab=28.96 E-value=47 Score=23.75 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027304 204 IIFLVFLWI 212 (225)
Q Consensus 204 ~~~~~~~~~ 212 (225)
||+++++++
T Consensus 7 Ii~~~~~~v 15 (58)
T PF12669_consen 7 IILAAVAYV 15 (58)
T ss_pred HHHHHHHHH
Confidence 333333443
No 33
>PRK10040 hypothetical protein; Provisional
Probab=27.52 E-value=94 Score=22.32 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=8.6
Q ss_pred CCCceecCCCC
Q 027304 40 SKEVIKCKDGS 50 (225)
Q Consensus 40 ~p~~F~C~dGs 50 (225)
+.+.|-|.||+
T Consensus 32 ~g~~FvCnDGS 42 (52)
T PRK10040 32 TGGKFVCNDGS 42 (52)
T ss_pred cCCEEEeCCCc
Confidence 35789999985
No 34
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=27.19 E-value=55 Score=24.21 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=13.1
Q ss_pred hhHHHHH---HHHHHHHHhhchhhccc
Q 027304 198 ILQSFVI---IFLVFLWIMHHSVRSKR 221 (225)
Q Consensus 198 ~~~~~~~---~~~~~~~~~~~~~~~~~ 221 (225)
|+|++++ ||+-.-|.+||+-+..+
T Consensus 6 iiQii~l~AlI~~pLGyl~~~~~~r~~ 32 (62)
T PF11120_consen 6 IIQIIILCALIFFPLGYLARRWLPRIR 32 (62)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 4565544 44444567777655443
No 35
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=24.29 E-value=79 Score=33.28 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=21.1
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCeeecCCCCCCcccccC
Q 027304 56 DRLNDNF-CDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFS 96 (225)
Q Consensus 56 s~vCDG~-~DC~DGSDE~~c~~C~~~~F~C~Ngg~~~~CI~~ 96 (225)
...|||. ..|+-.---.+-..|. ..+.|.|| .|++.
T Consensus 544 ~s~CnG~~aeCP~s~~~~d~t~C~-~~~~C~~G----~C~gs 580 (764)
T KOG3658|consen 544 ESTCNGFSAECPPSPPKPDGTVCN-ETGVCING----KCIGS 580 (764)
T ss_pred cccccCCccCCcCCCCCCCCCccc-ccceEeCC----cCccH
Confidence 3567775 5665422222212564 78899998 67774
No 36
>PF03273 Baculo_gp64: Baculovirus gp64 envelope glycoprotein family; InterPro: IPR004955 Gp64 is the major envelope fusion glycoprotein in some, though not all, baculoviruses [, ]. It is found on the surface of both infected cells and budded virions as a homotrimer, and by determining the viral receptor preferences it defines the host range and infection efficiency. Baculovirus enters its host cells by endocytosis followed by a low-pH-induced fusion of the viral envelope with the endosomal membrane, allowing viral entrance into the cell cytoplasm. This membrane fusion, and also the efficient budding of virions from the infected cell, is dependent on Gp64. Gp75 is a homologous envelope glycoprotein from Thogotoviruses that, like Gp64, forms homotrimers and is involved in both binding and entering the host cell [].; GO: 0019048 virus-host interaction, 0019031 viral envelope; PDB: 3DUZ_A.
Probab=23.95 E-value=33 Score=34.32 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=8.7
Q ss_pred hHHHHHHHhhhhhccccCccccccccccc-----------cccccccceeehhhHHHHHHHHHHHHHhhchhh
Q 027304 157 KEDLIERLGVLFVHNRYAPVKLKSLRDLS-----------FSLVFADVKMVVILQSFVIIFLVFLWIMHHSVR 218 (225)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+++||+-. ++-++--+-|||.||- .+++|.|. +..=+++++++|.+|++|+|.|
T Consensus 433 K~~LI~TM-----~~tk~GG~~TSL~di~~~~~G~l~~~l~~~~~g~~---~~~~l~~~~i~~l~~~~r~~~~ 497 (498)
T PF03273_consen 433 KQNLISTM-----EYTKFGGKGTSLSDILDYPKGWLNGQLGGLMLGHI---GSFVLIIGVIVFLFCMMRSRGR 497 (498)
T ss_dssp HHHHHHHT-----TSEEE-------------------------------------------------------
T ss_pred HHHHHHhh-----eeeccCCccccHHHHhhccchhhhheehhhhhCcc---ceehhhhhhhheeeeeeecccC
Confidence 46677654 7777888888888873 34444432 2222344555666777777654
No 37
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.77 E-value=49 Score=27.26 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=17.0
Q ss_pred ccccceeehhhHHHHHHHHHHHH
Q 027304 189 VFADVKMVVILQSFVIIFLVFLW 211 (225)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~ 211 (225)
-++++||-+++=++++|++++..
T Consensus 88 wWkn~Km~~il~~v~~i~l~iii 110 (116)
T KOG0860|consen 88 WWKNCKMRIILGLVIIILLVVII 110 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999988887777666544
No 38
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.73 E-value=81 Score=27.19 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=9.2
Q ss_pred HHHHHHHhhchhhcccc
Q 027304 206 FLVFLWIMHHSVRSKRR 222 (225)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ 222 (225)
.++++||.-|..|.|||
T Consensus 106 ~l~i~yfvir~~R~r~~ 122 (163)
T PF06679_consen 106 ALAILYFVIRTFRLRRR 122 (163)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 33444444456677665
No 39
>PHA02955 hypothetical protein; Provisional
Probab=20.61 E-value=87 Score=28.29 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=18.5
Q ss_pred eeehhhHHHHHHHHHHHHHhhchhhcccc
Q 027304 194 KMVVILQSFVIIFLVFLWIMHHSVRSKRR 222 (225)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (225)
+.-+|.=+++++.++++|.+||+.|-|=|
T Consensus 180 ~w~ii~~v~ii~~~v~l~yikR~i~~ky~ 208 (213)
T PHA02955 180 KWFIIYIVLCLLILIILGYIYRTVRIKYI 208 (213)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHheeeEe
Confidence 34444444445555558999998887643
No 40
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=20.38 E-value=2.1e+02 Score=23.95 Aligned_cols=28 Identities=29% Similarity=0.656 Sum_probs=15.4
Q ss_pred CCCC-CCCCCCCC----CCCCCeeecCCCCCCcccccC
Q 027304 64 DCID-GTDEPGTS----ACPAGKFYCGNVGSTPQFIFS 96 (225)
Q Consensus 64 DC~D-GSDE~~c~----~C~~~~F~C~Ngg~~~~CI~~ 96 (225)
.|-| ++|..+|. .|+.++.-| +| .|+..
T Consensus 76 ~Cvdv~~d~~nCG~Cg~~C~~g~~cC-~G----~Cvd~ 108 (136)
T PF04885_consen 76 KCVDVSSDRNNCGACGNKCPYGQTCC-GG----QCVDL 108 (136)
T ss_pred cCCccCCCccccHhhcCCCCCCceec-CC----EeECC
Confidence 4666 45777764 455555444 34 56664
No 41
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=20.13 E-value=76 Score=28.71 Aligned_cols=17 Identities=47% Similarity=0.747 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHHHHHHH
Q 027304 1 MTMELLRNLIPLMSLCF 17 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (225)
||++-|+.|||||.=|+
T Consensus 129 mTqaQLr~FIP~mvk~S 145 (214)
T PF10491_consen 129 MTQAQLRAFIPFMVKCS 145 (214)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 89999999999998764
No 42
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.08 E-value=66 Score=27.12 Aligned_cols=32 Identities=13% Similarity=0.426 Sum_probs=22.6
Q ss_pred ccceeehhhHHHHHHHHHHHHHhhchhhcccc
Q 027304 191 ADVKMVVILQSFVIIFLVFLWIMHHSVRSKRR 222 (225)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (225)
.-++.++++=+++++.++++-.+|+|..+|=|
T Consensus 16 ~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyR 47 (149)
T PF11694_consen 16 DYLRYILIIILLLVLIFFFIKYLRNRLDTKYR 47 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 34667777777777777777778888777744
Done!