Query 027304
Match_columns 225
No_of_seqs 190 out of 1139
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 12:56:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fyj_A Low-density lipoprotein 99.9 1.3E-21 4.3E-26 146.1 8.4 71 39-114 5-79 (82)
2 2fcw_B LDL receptor, low-densi 99.8 7.2E-22 2.4E-26 147.3 4.0 69 40-113 4-74 (80)
3 1n7d_A LDL receptor, low-densi 99.6 5.2E-16 1.8E-20 150.2 8.3 69 39-112 88-158 (699)
4 1n7d_A LDL receptor, low-densi 99.6 5.3E-16 1.8E-20 150.1 7.2 72 39-114 47-121 (699)
5 3m0c_C LDL receptor, low-densi 99.6 1.5E-16 5.2E-21 157.5 0.0 73 39-114 24-100 (791)
6 3m0c_C LDL receptor, low-densi 99.5 6.6E-16 2.3E-20 153.0 0.0 71 40-114 66-139 (791)
7 2xrc_A Human complement factor 99.5 7.1E-15 2.4E-19 140.1 6.2 68 42-114 207-274 (565)
8 1ajj_A LR5, low-density lipopr 99.1 7E-11 2.4E-15 76.0 2.9 34 77-114 2-35 (37)
9 3dpr_E LDL-receptor class A 3; 99.1 9.6E-11 3.3E-15 76.3 3.6 36 77-114 1-36 (39)
10 2kny_A LRP-1, linker, APO-E; l 99.0 3.3E-11 1.1E-15 89.9 1.1 60 40-101 10-75 (80)
11 1cr8_A Protein (LOW density li 99.0 1.4E-10 4.9E-15 76.6 3.8 36 76-114 3-38 (42)
12 1ajj_A LR5, low-density lipopr 99.0 8.7E-11 3E-15 75.6 2.6 34 40-74 3-36 (37)
13 2gtl_O Extracellular hemoglobi 99.0 8.1E-12 2.8E-16 108.7 -3.2 51 60-114 38-90 (215)
14 2jm4_A Relaxin receptor 1; LDL 99.0 1.5E-10 5.1E-15 76.8 3.6 35 76-114 6-41 (43)
15 1d2l_A Lipoprotein receptor re 99.0 1.9E-10 6.6E-15 77.4 3.6 35 76-114 5-39 (45)
16 1d2l_A Lipoprotein receptor re 99.0 2.7E-10 9.1E-15 76.7 4.2 34 40-74 7-40 (45)
17 2knx_A Prolow-density lipoprot 99.0 1.8E-10 6.1E-15 79.1 2.9 38 40-78 8-46 (50)
18 3a7q_B Low-density lipoprotein 99.0 2.4E-10 8.1E-15 76.2 3.3 35 76-114 7-41 (44)
19 2m0p_A Low-density lipoprotein 99.0 1.1E-10 3.6E-15 81.4 1.7 35 76-114 6-40 (52)
20 1j8e_A Low-density lipoprotein 99.0 2E-10 6.7E-15 76.6 2.9 36 75-114 3-38 (44)
21 2jm4_A Relaxin receptor 1; LDL 99.0 2.4E-10 8.2E-15 75.8 3.3 35 40-74 8-42 (43)
22 1jrf_A TVA LDL-A module, subgr 99.0 2.3E-10 7.8E-15 76.9 3.2 40 74-113 2-42 (47)
23 1cr8_A Protein (LOW density li 99.0 2.7E-10 9.1E-15 75.3 3.5 35 40-74 5-39 (42)
24 3dpr_E LDL-receptor class A 3; 99.0 2.4E-10 8.4E-15 74.3 3.2 34 41-74 3-37 (39)
25 3a7q_B Low-density lipoprotein 99.0 2.6E-10 8.9E-15 76.0 3.2 34 40-74 9-42 (44)
26 2i1p_A Low-density lipoprotein 99.0 1.2E-10 4.2E-15 78.9 1.2 36 40-75 8-43 (48)
27 1k7b_A Subgroup A ROUS sarcoma 98.9 2.6E-10 8.7E-15 76.8 2.6 35 76-114 6-45 (47)
28 2m0p_A Low-density lipoprotein 98.9 1.6E-10 5.6E-15 80.4 1.6 35 39-74 7-41 (52)
29 1k7b_A Subgroup A ROUS sarcoma 98.9 2.2E-10 7.4E-15 77.1 2.0 34 40-74 8-46 (47)
30 2knx_A Prolow-density lipoprot 98.9 4.9E-10 1.7E-14 76.9 3.0 35 76-114 6-41 (50)
31 2i1p_A Low-density lipoprotein 98.9 3.6E-10 1.2E-14 76.5 1.2 36 76-114 6-41 (48)
32 2kny_A LRP-1, linker, APO-E; l 98.9 6.9E-10 2.4E-14 82.7 2.3 47 76-126 8-56 (80)
33 2fyj_A Low-density lipoprotein 98.8 2.8E-09 9.6E-14 79.1 4.8 50 76-134 4-54 (82)
34 1jrf_A TVA LDL-A module, subgr 98.8 4.4E-10 1.5E-14 75.6 0.3 35 40-74 6-44 (47)
35 1j8e_A Low-density lipoprotein 98.8 2.2E-09 7.6E-14 71.5 2.6 33 40-73 6-38 (44)
36 2gtl_O Extracellular hemoglobi 98.7 1.2E-09 4.2E-14 94.9 0.0 46 38-84 54-103 (215)
37 2fcw_B LDL receptor, low-densi 98.7 7.6E-09 2.6E-13 76.8 3.4 35 76-114 2-36 (80)
38 2gtl_M Hemoglobin linker chain 98.7 2.9E-09 1E-13 92.7 1.2 66 39-114 54-120 (217)
39 2xrc_A Human complement factor 98.6 1.4E-08 4.8E-13 96.8 2.9 66 41-115 173-238 (565)
40 2gtl_N Extracellular hemoglobi 98.5 3.8E-08 1.3E-12 86.0 3.2 48 40-87 54-109 (220)
41 2gtl_M Hemoglobin linker chain 98.5 4.1E-08 1.4E-12 85.5 3.2 35 75-113 52-88 (217)
42 3ojy_B Complement component C8 98.3 3.5E-07 1.2E-11 87.6 4.0 46 42-95 69-115 (537)
43 2gtl_N Extracellular hemoglobi 98.3 3.5E-07 1.2E-11 79.9 3.5 34 76-113 52-87 (220)
44 3ojy_A Complement component C8 98.3 4.9E-07 1.7E-11 87.1 4.2 45 42-87 68-113 (554)
45 3ojy_B Complement component C8 98.1 1.5E-06 5E-11 83.3 5.0 32 80-115 69-101 (537)
46 3ojy_A Complement component C8 98.0 3.9E-06 1.3E-10 80.8 4.7 34 77-115 66-100 (554)
47 3t5o_A Complement component C6 97.4 9.8E-05 3.3E-09 74.4 4.4 31 80-114 121-151 (913)
48 3t5o_A Complement component C6 97.3 7.6E-05 2.6E-09 75.2 2.6 32 42-74 121-152 (913)
49 2l2t_A Receptor tyrosine-prote 77.6 1.6 5.4E-05 29.2 2.6 18 204-221 25-42 (44)
50 2ks1_B Epidermal growth factor 76.7 1.6 5.6E-05 29.1 2.5 13 208-220 29-41 (44)
51 2jwa_A Receptor tyrosine-prote 27.5 40 0.0014 22.4 2.4 15 202-216 24-38 (44)
52 1hvw_A Omega-ACTX-HV1A, omega- 23.6 43 0.0015 20.1 1.8 18 93-110 1-18 (26)
53 2klu_A T-cell surface glycopro 22.5 56 0.0019 23.7 2.6 9 208-216 27-35 (70)
54 2k9y_A Ephrin type-A receptor 22.2 39 0.0013 21.0 1.5 8 208-215 31-38 (41)
55 2da1_A Alpha-fetoprotein enhan 20.9 48 0.0016 22.3 1.9 52 157-223 15-66 (70)
No 1
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.85 E-value=1.3e-21 Score=146.09 Aligned_cols=71 Identities=28% Similarity=0.398 Sum_probs=64.1
Q ss_pred CCCCceecCCCCceecCCCCCCCCCCCCCCCCC-CCCC--CCCC-CeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDE-PGTS--ACPA-GKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 39 ~~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE-~~c~--~C~~-~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
..+++|+|.+| +|||..|+|||..||.||||| .+|. .|.+ .+|+|.|+ .||+..|+|||+.||.|||||.+
T Consensus 5 C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g----~CI~~~~~CDG~~DC~DgSDE~~ 79 (82)
T 2fyj_A 5 CPPNQFSCASG-RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG----RCININWRCDNDNDCGDNSDEAG 79 (82)
T ss_dssp SCTTEEETTSS-CEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTS----CEEETTCBSSSSBCCSSSSSCSC
T ss_pred CCCCceEeCCC-CEEeccccCCCcccCCCccccccccccccCCCCCceECCCC----CeEcHHHccCCCCcCCCCccccC
Confidence 34689999998 799999999999999999999 6764 6854 99999988 79999999999999999999984
No 2
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.84 E-value=7.2e-22 Score=147.32 Aligned_cols=69 Identities=36% Similarity=0.660 Sum_probs=64.5
Q ss_pred CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCCC--CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY 113 (225)
Q Consensus 40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~ 113 (225)
.+++|+|.+| +||+..|+|||..||.|||||.+|. .|++.+|+|.++ .||+..|+|||+.||.|||||.
T Consensus 4 ~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~dgsDE~ 74 (80)
T 2fcw_B 4 SQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDEW 74 (80)
T ss_dssp CTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTS----CEEEGGGTTSSSCCSTTCGGGC
T ss_pred CCCccCCCCC-CEEeeecccCCcccCCCcccccccccccCCceeeECCCC----CEEecccccCCCcCCCCCCCcC
Confidence 4689999998 7999999999999999999999874 699999999987 7999999999999999999995
No 3
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.62 E-value=5.2e-16 Score=150.23 Aligned_cols=69 Identities=36% Similarity=0.650 Sum_probs=60.7
Q ss_pred CCCCceecCCCCceecCCCCCCCCCCCCCCCCCCCCC--CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCC
Q 027304 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE 112 (225)
Q Consensus 39 ~~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE 112 (225)
..+++|+|.+| +||+..|+|||..||.|||||.+|. .|++.+|+|.++ .||+..|+|||..||.|||||
T Consensus 88 C~~~~f~C~~g-~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE 158 (699)
T 1n7d_A 88 CSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDE 158 (699)
T ss_dssp CCSSCCCSSCC-----CCCTTCSSCCSSSSCSSSSCCCCCCCSSCCCCSSS----CCCCTTSTTCSSCCSSSSSSS
T ss_pred cccCcEEcCCC-CEecHHHcCCCcCcCCCCCccCCcCccccCccccCCCCC----cccchhcccCCCCcCCCCccc
Confidence 34689999998 7999999999999999999999875 699999999987 799999999999999999999
No 4
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.61 E-value=5.3e-16 Score=150.15 Aligned_cols=72 Identities=29% Similarity=0.481 Sum_probs=60.6
Q ss_pred CCCCceecCCC-CceecCCCCCCCCCCCCCCCCCCCCC--CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 39 FSKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 39 ~~p~~F~C~dG-s~CIp~s~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
..+++|+|.++ .+|||..|+|||..||.|||||.+|. .|+.++|+|.++ .||+..|+|||..||.|||||.+
T Consensus 47 C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~Cdg~~dC~dgsDE~~ 121 (699)
T 1n7d_A 47 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS 121 (699)
T ss_dssp CSSSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTTSCSSCCCCSSCCCSSCC--------CCCTTCSSCCSSSSCSSSS
T ss_pred CCCCccCCCCCCCceeCcceecCCcccCCCCcccCcccccccccCcEEcCCC----CEecHHHcCCCcCcCCCCCccCC
Confidence 34689999986 37999999999999999999999975 699999999988 89999999999999999999985
No 5
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.58 E-value=1.5e-16 Score=157.51 Aligned_cols=73 Identities=32% Similarity=0.577 Sum_probs=0.0
Q ss_pred CCCCceecCCCCceecCCCCCCCCCCCCCCCCCCC--CC--CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG--TS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 39 ~~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~--c~--~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
..+++|+|.+| +||+..|+|||..||.|||||.+ |. .|++++|+|.++. ..||+..|+|||..||.|||||.+
T Consensus 24 C~~~~f~C~~g-~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~--~~Ci~~~~~CDg~~dC~dgsDE~~ 100 (791)
T 3m0c_C 24 CERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRV--NRCIPQFWRCDGQVDCDNGSDEQG 100 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcCccCCCCC-CEEehhhcCCCCccCCCCCcccccccccCccCcCccccCCCC--CCEeeccccCCCCcCcCCCcccCC
Confidence 45789999998 79999999999999999999987 42 6889999999831 279999999999999999999984
No 6
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.53 E-value=6.6e-16 Score=152.96 Aligned_cols=71 Identities=30% Similarity=0.492 Sum_probs=0.0
Q ss_pred CCCceecCCC-CceecCCCCCCCCCCCCCCCCCCCCC--CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 40 ~p~~F~C~dG-s~CIp~s~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
.+++|+|.++ .+|||..|+|||..||.|||||.+|. .|+.++|+|.++ .||+..|+|||..||.|||||.+
T Consensus 66 ~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~dC~dgsDE~~ 139 (791)
T 3m0c_C 66 KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS 139 (791)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CcCccccCCCCCCEeeccccCCCCcCcCCCcccCCccCccccCCeEECCCC----CEECHHHcCCCcccCCCCccccc
Confidence 4678999973 37999999999999999999999975 599999999998 89999999999999999999974
No 7
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.52 E-value=7.1e-15 Score=140.05 Aligned_cols=68 Identities=29% Similarity=0.483 Sum_probs=63.2
Q ss_pred CceecCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 42 EVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 42 ~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
++|+|.+| .||+..++|||..||+|||||.+|..|++..|+|.++ .|++..++|||..||.|||||.+
T Consensus 207 ~~~~C~~~-~ci~~~~~Cdg~~dC~d~sDE~~C~~c~~~~~~C~~~----~C~~~~~~cdG~~dC~~gsDE~~ 274 (565)
T 2xrc_A 207 DFFQCVNG-KYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSG----VCIPSQYQCNGEVDCITGEDEVG 274 (565)
T ss_dssp --CBCTTS-CBCCTTSTTSSSCCSSSSSSSSSBSSCSSSCEEETTT----EEECGGGTTSSSCCSSSCTTSSS
T ss_pred CeeECCCC-CccCHHHcCCCcccCCCCcccccccccCCCceecCCC----cccCccccCCCcccCCCCccccC
Confidence 45999988 7999999999999999999999998899999999988 79999999999999999999975
No 8
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.05 E-value=7e-11 Score=76.05 Aligned_cols=34 Identities=41% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 77 C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
|++.+|+|.++ .||+.+|+|||+.||.|||||.+
T Consensus 2 C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~~ 35 (37)
T 1ajj_A 2 CSAFEFHCLSG----ECIHSSWRCDGGPDCKDKSDEEN 35 (37)
T ss_dssp CCTTCEECTTS----CEECGGGTTSSSCCSTTCGGGTT
T ss_pred CCCCceEcCCC----CeechhhccCCCCCCCCCccccC
Confidence 78899999988 79999999999999999999973
No 9
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=99.05 E-value=9.6e-11 Score=76.28 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=31.3
Q ss_pred CCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 77 C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
|++.+|+|.++ ...||+.+|+|||..||.|||||.+
T Consensus 1 C~~~~f~C~~~--~g~Cip~~~~CDg~~DC~dgsDE~~ 36 (39)
T 3dpr_E 1 CRIHEISCGAH--STQCIPVSWRCDGENDCDSGEDEEN 36 (39)
T ss_dssp CCTTTCCCSSS--SSCCCCTTSSSSSSCCSTTTTTSTT
T ss_pred CCCCceecCCC--CCCEeCccccCCCcccCcCCccccc
Confidence 67889999982 1289999999999999999999973
No 10
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.04 E-value=3.3e-11 Score=89.85 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=47.0
Q ss_pred CCCceecCCCCceecCCCCCCCCCCCCCCCCCCC---C---CCCCCCeeecCCCCCCcccccCCCccC
Q 027304 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG---T---SACPAGKFYCGNVGSTPQFIFSSRVND 101 (225)
Q Consensus 40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~---c---~~C~~~~F~C~Ngg~~~~CI~~s~VCD 101 (225)
.+++|+|.++..|||.+|+|||..||.|||||.. | ..|.+..|+|.+.- ..||+..+...
T Consensus 10 ~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~--~~ci~~~~~gL 75 (80)
T 2kny_A 10 GPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEEL--RVRLASHLRKL 75 (80)
T ss_dssp SSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHH--HHHTTTTTTTT
T ss_pred CCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHH--HHHHHHHHHHH
Confidence 4689999854489999999999999999999984 3 25777889998820 16888766543
No 11
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.03 E-value=1.4e-10 Score=76.55 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=32.2
Q ss_pred CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
.|+.++|+|.+.+ .||+..|+|||+.||.|||||.+
T Consensus 3 ~C~~~~F~C~~~g---~CI~~~~~CDg~~DC~DgSDE~~ 38 (42)
T 1cr8_A 3 GCHTDEFQCRLDG---LCIPLRWRCDGDTDCMDSSDEKS 38 (42)
T ss_dssp CSSTTCEECTTTC---CEECGGGSSSSSCCSSSSTTTTT
T ss_pred CCCCCceEeCCCC---eEcChhhcCCCCcCCCCCCcccC
Confidence 5889999998632 79999999999999999999973
No 12
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.03 E-value=8.7e-11 Score=75.60 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=31.0
Q ss_pred CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (225)
Q Consensus 40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c 74 (225)
.+++|+|.+| +||+..|+|||..||.|||||.+|
T Consensus 3 ~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C 36 (37)
T 1ajj_A 3 SAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp CTTCEECTTS-CEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCCceEcCCC-CeechhhccCCCCCCCCCccccCC
Confidence 3578999998 799999999999999999999874
No 13
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.03 E-value=8.1e-12 Score=108.66 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeec--CCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 60 DNFCDCIDGTDEPGTSACPAGKFYC--GNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 60 DG~~DC~DGSDE~~c~~C~~~~F~C--~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
-++.||.|+|||.+|..|++++|+| .|| .|||.+|+|||..||.|||||.+
T Consensus 38 ~~~~~c~d~sDE~~C~~C~~~~F~C~~~~g----~CIp~~~~CDG~~DC~DgSDE~~ 90 (215)
T 2gtl_O 38 RKAGSLRHRVEELEDPSCDEHEHQCGGDDP----QCISKLFVCDGHNDCRNGEDEKD 90 (215)
T ss_dssp HHHHHHHHHHHHHSCCSSCTTEEECCSSSC----CEEEGGGTTSSSCCSSSCHHHHC
T ss_pred cccccCCcchhhccCCCCCCcceeeCCCCC----cCccccccCCCCCcCCCcccccC
Confidence 3456899999999998899999999 566 89999999999999999999974
No 14
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=76.83 Aligned_cols=35 Identities=29% Similarity=0.550 Sum_probs=32.6
Q ss_pred CCCCCeeecCC-CCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 76 ACPAGKFYCGN-VGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 76 ~C~~~~F~C~N-gg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
.|+.++|+|.| + .||+.+|+|||+.||.|||||.+
T Consensus 6 ~C~~~~f~C~~~g----~CI~~~~~CDg~~DC~DgSDE~~ 41 (43)
T 2jm4_A 6 KCSLGYFPCGNIT----KCLPQLLHCNGVDDCGNQADEDN 41 (43)
T ss_dssp SCCTTEEECSSSS----CEEEGGGTTSSCCCSSSCCTTSS
T ss_pred CCCCCeeECCCCC----eEcCHhhccCCCCCCCCCcccCC
Confidence 68899999999 5 79999999999999999999974
No 15
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.00 E-value=1.9e-10 Score=77.38 Aligned_cols=35 Identities=37% Similarity=0.585 Sum_probs=33.0
Q ss_pred CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
.|+.++|+|.|+ .||+.+|+|||+.||.|||||..
T Consensus 5 ~C~~~~F~C~~g----~CI~~~~~CDG~~DC~DgSDE~~ 39 (45)
T 1d2l_A 5 QCQPGEFACANS----RCIQERWKCDGDNDCLDNSDEAP 39 (45)
T ss_dssp BTTBTCEEETTT----EEECGGGTTTSSCTTTTCSTTST
T ss_pred cCCCCceEcCCC----CeEehhhccCCCCCCCCCCCCCC
Confidence 588899999998 89999999999999999999985
No 16
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.00 E-value=2.7e-10 Score=76.71 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=31.5
Q ss_pred CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (225)
Q Consensus 40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c 74 (225)
.+++|+|.+| +||+..|+|||..||.|||||.++
T Consensus 7 ~~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 7 QPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp TBTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CCCceEcCCC-CeEehhhccCCCCCCCCCCCCCCC
Confidence 4679999998 799999999999999999999885
No 17
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.99 E-value=1.8e-10 Score=79.15 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=33.8
Q ss_pred CCCceecC-CCCceecCCCCCCCCCCCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACP 78 (225)
Q Consensus 40 ~p~~F~C~-dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~ 78 (225)
.+++|+|. +| +||+..|+|||..||.|||||.++..|+
T Consensus 8 ~~~~F~C~~~g-~CI~~~~~CDG~~DC~DgSDE~~C~~C~ 46 (50)
T 2knx_A 8 GPSSFSCPGTH-VCVPERWLCDGDKDCADGADESIAAGCL 46 (50)
T ss_dssp CTTEEEETTTT-EEEETTTTTSSSCCSTTCGGGSGGGTCC
T ss_pred CCCcEEcCCCC-eEcChhhcCCCCCCCCCCCccccccCCC
Confidence 46899996 66 8999999999999999999999876675
No 18
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=98.98 E-value=2.4e-10 Score=76.20 Aligned_cols=35 Identities=40% Similarity=0.526 Sum_probs=32.2
Q ss_pred CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
.|+..+|+|.|+ .||+..|+|||+.||.|||||.+
T Consensus 7 ~C~~~~f~C~~g----~CI~~~~~CDg~~DC~DgSDE~~ 41 (44)
T 3a7q_B 7 ECEKDQFQCRNE----RCIPSVWRCDEDDDCLDHSDEDD 41 (44)
T ss_dssp -CCTTEEECTTS----CEEEGGGTTSSSCCSSSSTTTSC
T ss_pred CCCCCceEcCCC----CEeChhhccCCCCCCCCCccccC
Confidence 588999999997 89999999999999999999973
No 19
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.1e-10 Score=81.39 Aligned_cols=35 Identities=40% Similarity=0.630 Sum_probs=33.1
Q ss_pred CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
.|+.++|+|.|| .||+..|+|||..||.|||||.+
T Consensus 6 ~C~~~~F~C~nG----~CIp~~~~CDG~~DC~DgSDE~~ 40 (52)
T 2m0p_A 6 SCLDTQYTCDNH----QCISKNWVCDTDNDCGDGSDEKN 40 (52)
T ss_dssp SSCSSEEECTTC----CEEETTSTTSSSCSSSSCHHHHS
T ss_pred CCCCCceECCCC----CEEecCccCCCCCCCCCCCcccc
Confidence 699999999998 79999999999999999999985
No 20
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.98 E-value=2e-10 Score=76.60 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=33.3
Q ss_pred CCCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 75 SACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 75 ~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
..|++.+|+|.|+ .||+..|+|||+.||.|||||..
T Consensus 3 ~~C~~~~F~C~~g----~CI~~~~~CDg~~DC~DgSDE~~ 38 (44)
T 1j8e_A 3 HSCSSTQFKCNSG----RCIPEHWTCDGDNDCGDYSDETH 38 (44)
T ss_dssp SSSCTTEEECTTS----CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred CCCCCCceEeCCC----CeEecCcccCCCCCCCCCCCCCC
Confidence 3689999999998 79999999999999999999974
No 21
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=98.98 E-value=2.4e-10 Score=75.82 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=31.2
Q ss_pred CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (225)
Q Consensus 40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c 74 (225)
.+++|+|.++.+|||..|+|||..||.|||||.+|
T Consensus 8 ~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 42 (43)
T 2jm4_A 8 SLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42 (43)
T ss_dssp CTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred CCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence 46899999933799999999999999999999874
No 22
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.98 E-value=2.3e-10 Score=76.95 Aligned_cols=40 Identities=35% Similarity=0.692 Sum_probs=32.8
Q ss_pred CCCCCCCeeecCCC-CCCcccccCCCccCCCCCCCCCCCCC
Q 027304 74 TSACPAGKFYCGNV-GSTPQFIFSSRVNDRICDCCDGSDEY 113 (225)
Q Consensus 74 c~~C~~~~F~C~Ng-g~~~~CI~~s~VCDGv~DC~DGSDE~ 113 (225)
+..|++++|+|.++ ++.+.||+.+|+|||+.||.|||||.
T Consensus 2 ~~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~ 42 (47)
T 1jrf_A 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEW 42 (47)
T ss_dssp CCCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTH
T ss_pred CCCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccc
Confidence 34699999999841 01128999999999999999999997
No 23
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.98 E-value=2.7e-10 Score=75.26 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=30.7
Q ss_pred CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (225)
Q Consensus 40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c 74 (225)
.+++|+|.+..+||+..|+|||..||.|||||.+|
T Consensus 5 ~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 39 (42)
T 1cr8_A 5 HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39 (42)
T ss_dssp STTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred CCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCC
Confidence 46799998633799999999999999999999874
No 24
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=98.98 E-value=2.4e-10 Score=74.34 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=30.3
Q ss_pred CCceecCC-CCceecCCCCCCCCCCCCCCCCCCCC
Q 027304 41 KEVIKCKD-GSKSFTRDRLNDNFCDCIDGTDEPGT 74 (225)
Q Consensus 41 p~~F~C~d-Gs~CIp~s~vCDG~~DC~DGSDE~~c 74 (225)
+++|+|.+ ..+|||.+|+|||..||.|||||.+|
T Consensus 3 ~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C 37 (39)
T 3dpr_E 3 IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37 (39)
T ss_dssp TTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTC
T ss_pred CCceecCCCCCCEeCccccCCCcccCcCCcccccC
Confidence 57899998 23899999999999999999999874
No 25
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=98.97 E-value=2.6e-10 Score=76.00 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=31.2
Q ss_pred CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (225)
Q Consensus 40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c 74 (225)
.+++|+|.+| +||+..|+|||..||.|||||.+|
T Consensus 9 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C 42 (44)
T 3a7q_B 9 EKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDDC 42 (44)
T ss_dssp CTTEEECTTS-CEEEGGGTTSSSCCSSSSTTTSCC
T ss_pred CCCceEcCCC-CEeChhhccCCCCCCCCCccccCC
Confidence 4679999998 799999999999999999999874
No 26
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.95 E-value=1.2e-10 Score=78.87 Aligned_cols=36 Identities=33% Similarity=0.598 Sum_probs=32.5
Q ss_pred CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS 75 (225)
Q Consensus 40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~ 75 (225)
.+++|+|.+|.+||+..|+|||..||.|||||.+|.
T Consensus 8 ~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (48)
T 2i1p_A 8 TSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43 (48)
T ss_dssp CSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred CCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence 468999999867999999999999999999998753
No 27
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.95 E-value=2.6e-10 Score=76.80 Aligned_cols=35 Identities=34% Similarity=0.706 Sum_probs=31.9
Q ss_pred CCCCCeeecC-----CCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 76 ACPAGKFYCG-----NVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 76 ~C~~~~F~C~-----Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
.|++++|+|. ++ .||+.+|+|||+.||.|||||.+
T Consensus 6 ~C~~~~F~C~~~~~~~g----~CIp~~~~CDG~~DC~DgSDE~~ 45 (47)
T 1k7b_A 6 SCPPGQFRCSEPPGAHG----ECYPQDWLCDGHPDCDDGRDEWG 45 (47)
T ss_dssp CCSTTEECCSSCTTSCC----CCEEGGGSSCSSCCSSSSTTTGG
T ss_pred CCCCCceEcCCCCCCCC----cCCCccccCCCcCCCCCCcccCC
Confidence 5889999998 44 79999999999999999999973
No 28
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=1.6e-10 Score=80.45 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=31.7
Q ss_pred CCCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304 39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (225)
Q Consensus 39 ~~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c 74 (225)
..+++|+|.+| +||+..|+|||..||.|||||.++
T Consensus 7 C~~~~F~C~nG-~CIp~~~~CDG~~DC~DgSDE~~~ 41 (52)
T 2m0p_A 7 CLDTQYTCDNH-QCISKNWVCDTDNDCGDGSDEKNC 41 (52)
T ss_dssp SCSSEEECTTC-CEEETTSTTSSSCSSSSCHHHHSC
T ss_pred CCCCceECCCC-CEEecCccCCCCCCCCCCCccccc
Confidence 35689999998 799999999999999999999874
No 29
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.94 E-value=2.2e-10 Score=77.14 Aligned_cols=34 Identities=35% Similarity=0.666 Sum_probs=30.4
Q ss_pred CCCceecC-----CCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCK-----DGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (225)
Q Consensus 40 ~p~~F~C~-----dGs~CIp~s~vCDG~~DC~DGSDE~~c 74 (225)
.+++|+|. ++ +|||.+|+|||..||.|||||.+|
T Consensus 8 ~~~~F~C~~~~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C 46 (47)
T 1k7b_A 8 PPGQFRCSEPPGAHG-ECYPQDWLCDGHPDCDDGRDEWGC 46 (47)
T ss_dssp STTEECCSSCTTSCC-CCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CCCceEcCCCCCCCC-cCCCccccCCCcCCCCCCcccCCC
Confidence 46899998 45 899999999999999999999874
No 30
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.91 E-value=4.9e-10 Score=76.94 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=32.3
Q ss_pred CCCCCeeecC-CCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 76 ACPAGKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 76 ~C~~~~F~C~-Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
.|++.+|+|. ++ .||+..|+|||+.||.|||||..
T Consensus 6 ~C~~~~F~C~~~g----~CI~~~~~CDG~~DC~DgSDE~~ 41 (50)
T 2knx_A 6 TCGPSSFSCPGTH----VCVPERWLCDGDKDCADGADESI 41 (50)
T ss_dssp TTCTTEEEETTTT----EEEETTTTTSSSCCSTTCGGGSG
T ss_pred CCCCCcEEcCCCC----eEcChhhcCCCCCCCCCCCcccc
Confidence 5999999996 66 89999999999999999999985
No 31
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.88 E-value=3.6e-10 Score=76.55 Aligned_cols=36 Identities=33% Similarity=0.566 Sum_probs=32.8
Q ss_pred CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
.|++.+|+|.|++ .||+.+|+|||+.||.|||||.+
T Consensus 6 ~C~~~~F~C~~g~---~CI~~~~~CDG~~DC~DgSDE~~ 41 (48)
T 2i1p_A 6 NCTSAQFKCADGS---SCINSRYRCDGVYDCRDNSDEAG 41 (48)
T ss_dssp CCCSSSEECSSSS---CEECGGGSSSSSCCSSSSHHHHS
T ss_pred CCCCCeeECCCCC---EeCCHhhcCCCCCCCCCCccccc
Confidence 5888999999973 69999999999999999999984
No 32
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=98.86 E-value=6.9e-10 Score=82.69 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=38.3
Q ss_pred CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCC--CccccC
Q 027304 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP--NTCVMG 126 (225)
Q Consensus 76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~~~~Cp--n~C~~~ 126 (225)
.|++++|+|.+.+ .|||.+|+|||+.||.|||||... ..|+ ++|...
T Consensus 8 ~C~~~~f~C~~~g---~CIp~~~~CDg~~DC~DgsDE~~~-~~C~~~~~C~~~ 56 (80)
T 2kny_A 8 TCGPSSFSCPGTH---VCVPERWLCDGDKDCADGADESIA-AGCLYNSTGSGS 56 (80)
T ss_dssp CCSSSEEECTTSS---CEEEHHHHTTSSCCSSSSTTTSGG-GTCSSSSTTTTC
T ss_pred CCCCCceecCCCC---eEcChhhcCCCCCCCCCCCccccc-cCCCCCcccCcc
Confidence 5899999998543 799999999999999999999742 2576 567644
No 33
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=98.83 E-value=2.8e-09 Score=79.13 Aligned_cols=50 Identities=32% Similarity=0.544 Sum_probs=38.7
Q ss_pred CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCC-CccccCCcchhhcc
Q 027304 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP-NTCVMGGNIEYKAQ 134 (225)
Q Consensus 76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~~~~Cp-n~C~~~g~~~~~~~ 134 (225)
.|++++|+|.+| .||+.+|+|||+.||.|||||.. .|+ .+|...+ +|.++
T Consensus 4 ~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~~---~C~~~~C~~~~--~f~C~ 54 (82)
T 2fyj_A 4 TCPPNQFSCASG----RCIPISWTCDLDDDCGDRSDESA---SCAYPTCFPLT--QFTCN 54 (82)
T ss_dssp SSCTTEEETTSS----CEEETTSSSSCSSSSCSTTTTTS---SCCCSSSCSSS--EEECT
T ss_pred CCCCCceEeCCC----CEEeccccCCCcccCCCcccccc---ccccccCCCCC--ceECC
Confidence 588999999997 79999999999999999999931 365 2454333 34443
No 34
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.83 E-value=4.4e-10 Score=75.55 Aligned_cols=35 Identities=31% Similarity=0.597 Sum_probs=30.2
Q ss_pred CCCceecCC----CCceecCCCCCCCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKD----GSKSFTRDRLNDNFCDCIDGTDEPGT 74 (225)
Q Consensus 40 ~p~~F~C~d----Gs~CIp~s~vCDG~~DC~DGSDE~~c 74 (225)
.+++|+|.+ ..+|||..|+|||..||.|||||.+|
T Consensus 6 ~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C 44 (47)
T 1jrf_A 6 PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44 (47)
T ss_dssp CCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHH
T ss_pred CCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccC
Confidence 467999984 23799999999999999999999763
No 35
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.78 E-value=2.2e-09 Score=71.45 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=30.6
Q ss_pred CCCceecCCCCceecCCCCCCCCCCCCCCCCCCC
Q 027304 40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG 73 (225)
Q Consensus 40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~ 73 (225)
.+++|+|.+| +|||..|+|||..||.|||||.+
T Consensus 6 ~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~ 38 (44)
T 1j8e_A 6 SSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETH 38 (44)
T ss_dssp CTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred CCCceEeCCC-CeEecCcccCCCCCCCCCCCCCC
Confidence 4679999998 79999999999999999999976
No 36
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.73 E-value=1.2e-09 Score=94.95 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=39.7
Q ss_pred CCCCCceec--CCCCceecCCCCCCCCCCCCCCCCCCCCC--CCCCCeeec
Q 027304 38 YFSKEVIKC--KDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYC 84 (225)
Q Consensus 38 ~~~p~~F~C--~dGs~CIp~s~vCDG~~DC~DGSDE~~c~--~C~~~~F~C 84 (225)
...+++|+| .+| +|||.+|+|||..||.|||||.+|. .|++.+|.|
T Consensus 54 ~C~~~~F~C~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c 103 (215)
T 2gtl_O 54 SCDEHEHQCGGDDP-QCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIG 103 (215)
T ss_dssp SSCTTEEECCSSSC-CEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEE
T ss_pred CCCCcceeeCCCCC-cCccccccCCCCCcCCCcccccCCCCCCcCCCceee
Confidence 345789999 566 7999999999999999999998875 588888887
No 37
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=98.69 E-value=7.6e-09 Score=76.76 Aligned_cols=35 Identities=37% Similarity=0.589 Sum_probs=32.7
Q ss_pred CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
.|++++|+|.|+ .||+..|+|||+.||.|||||.+
T Consensus 2 ~C~~~~F~C~~g----~CI~~~~~CDg~~DC~DgSDE~~ 36 (80)
T 2fcw_B 2 TCSQAEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS 36 (80)
T ss_dssp CCCTTEEECTTS----CEEEGGGTTSSSCCSTTCTTTTT
T ss_pred CCCCCccCCCCC----CEEeeecccCCcccCCCcccccc
Confidence 488999999997 79999999999999999999984
No 38
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.69 E-value=2.9e-09 Score=92.74 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=44.0
Q ss_pred CCCCceecCC-CCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 39 FSKEVIKCKD-GSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 39 ~~p~~F~C~d-Gs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
..+++|+|.+ .+.|||..|+|||..||+|||||... .|+.....|.+ .++-. ....+|.+++||..
T Consensus 54 C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~-~C~~~~~~~~~-----~~~g~----~~~~~C~~~~pe~~ 120 (217)
T 2gtl_M 54 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE-TCSLNITHVGS-----SYTGL----ATWTSCEDLNPDHA 120 (217)
T ss_dssp CCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHH-HHCCGGGCTTC-----EEEEE----EEESSSCSCCSEEE
T ss_pred CCCCceecCCCCCcEechhhccCCCCCCCCCCccccC-cCCCCcccCCc-----ccccc----cCcccCCCCCCCee
Confidence 4578999975 23799999999999999999999721 14322222322 12211 33458889998864
No 39
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=98.59 E-value=1.4e-08 Score=96.78 Aligned_cols=66 Identities=24% Similarity=0.266 Sum_probs=48.8
Q ss_pred CCceecCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 027304 41 KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS 115 (225)
Q Consensus 41 p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~ 115 (225)
+..+.|..+ .+++..+.||+..+|.+.+++. |...+|+|.|+ .||+..++|||+.||.|||||.++
T Consensus 173 ~sl~~C~~~-~~~~~~h~~DagV~C~~~~~~c----~~~~~~~C~~~----~ci~~~~~Cdg~~dC~d~sDE~~C 238 (565)
T 2xrc_A 173 TSLAECTFT-KRRTMGYQDFADVVCYTQKADS----PMDDFFQCVNG----KYISQMKACDGINDCGDQSDELCC 238 (565)
T ss_dssp SCGGGSEEE-CCCCCSSCCCCEEEBCCC-------------CBCTTS----CBCCTTSTTSSSCCSSSSSSSSSB
T ss_pred CchhhcccC-cccccccccCCceeccccccCC----CCcCeeECCCC----CccCHHHcCCCcccCCCCcccccc
Confidence 445667655 3777788999999999876551 33566999988 799999999999999999999863
No 40
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.51 E-value=3.8e-08 Score=85.99 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=36.6
Q ss_pred CCCceecC-CCCceecCCCCCCCCCCCCCCCCCC--CCC---CCCCC--eeecCCC
Q 027304 40 SKEVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEP--GTS---ACPAG--KFYCGNV 87 (225)
Q Consensus 40 ~p~~F~C~-dGs~CIp~s~vCDG~~DC~DGSDE~--~c~---~C~~~--~F~C~Ng 87 (225)
.+++|+|. +.++|||..|+|||..||+|||||. +|. .|.+. ++.|.++
T Consensus 54 ~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~d 109 (220)
T 2gtl_N 54 EKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWH 109 (220)
T ss_dssp CTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEEC
T ss_pred CCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecCC
Confidence 46799996 2337999999999999999999996 542 45443 4567666
No 41
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.51 E-value=4.1e-08 Score=85.51 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=32.0
Q ss_pred CCCCCCeeecCC--CCCCcccccCCCccCCCCCCCCCCCCC
Q 027304 75 SACPAGKFYCGN--VGSTPQFIFSSRVNDRICDCCDGSDEY 113 (225)
Q Consensus 75 ~~C~~~~F~C~N--gg~~~~CI~~s~VCDGv~DC~DGSDE~ 113 (225)
..|++++|+|.| | .||+.+|+|||..||.|||||.
T Consensus 52 ~~C~~~~F~C~~~~g----~CI~~~~~CDG~~DC~DgSDE~ 88 (217)
T 2gtl_M 52 HHCDEHESECRGDVP----ECIHDLLFCDGEKDCRDGSDED 88 (217)
T ss_dssp CCCCTTEEECSSSSC----CEEEGGGTTSSSCCSSSSTTTS
T ss_pred CCCCCCceecCCCCC----cEechhhccCCCCCCCCCCccc
Confidence 369999999975 5 7999999999999999999997
No 42
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.28 E-value=3.5e-07 Score=87.56 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=38.8
Q ss_pred CceecC-CCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccccc
Q 027304 42 EVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIF 95 (225)
Q Consensus 42 ~~F~C~-dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ngg~~~~CI~ 95 (225)
++|+|. +| +||+..|+|||..||.|||||.+ |+.....|..+ .+++
T Consensus 69 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sdE~~---c~~~~~~C~~~----~~~~ 115 (537)
T 3ojy_B 69 EGFVCAQTG-RCVNRRLLCNGDNDCGDQSDEAN---CRRIYKKCQHE----MDQY 115 (537)
T ss_dssp SSEECTTTC-CEECGGGTTSSSCCSSSSCTTSS---CSSCSSCCSSC----CBCC
T ss_pred CccCcCCCC-cEeeccccCCCCCCCCCcccccc---CCCCCCccccC----cCCC
Confidence 689999 77 79999999999999999999987 55556778765 4665
No 43
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.28 E-value=3.5e-07 Score=79.89 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=30.9
Q ss_pred CCCCCeeecC--CCCCCcccccCCCccCCCCCCCCCCCCC
Q 027304 76 ACPAGKFYCG--NVGSTPQFIFSSRVNDRICDCCDGSDEY 113 (225)
Q Consensus 76 ~C~~~~F~C~--Ngg~~~~CI~~s~VCDGv~DC~DGSDE~ 113 (225)
.|+..+|+|. +| .||+..|+|||..||.|||||.
T Consensus 52 ~C~~~eFqC~~~~g----~CIp~~wvCDG~~DC~DGSDE~ 87 (220)
T 2gtl_N 52 HCEKRTFQCGGNEQ----ECISDLLVCDGHKDCHNAHDED 87 (220)
T ss_dssp SSCTTEEECCSSSC----CEEETTTTTSSSCCSTTCTTSC
T ss_pred CCCCCccCcCCCCC----cEeCcceecCCCCCCCCCCccC
Confidence 5889999996 34 7999999999999999999996
No 44
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.25 E-value=4.9e-07 Score=87.13 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=36.2
Q ss_pred CceecC-CCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCC
Q 027304 42 EVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNV 87 (225)
Q Consensus 42 ~~F~C~-dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ng 87 (225)
++|+|. +| +||+..|+|||..||.|||||.+|..++...+.|...
T Consensus 68 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sDE~~C~~~~~~~~~C~~~ 113 (554)
T 3ojy_A 68 QDFQCKETG-RCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQY 113 (554)
T ss_dssp SSEECSSSC-CEECGGGTTSSSCCSSSCTTSSSCCSCCCCCTTTTTS
T ss_pred CcCccCCCC-EEcccccccCCcccCCCccccccCCCCCCCccccccc
Confidence 699999 77 7999999999999999999999864433234567543
No 45
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.15 E-value=1.5e-06 Score=83.32 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=29.8
Q ss_pred CeeecC-CCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 027304 80 GKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYDS 115 (225)
Q Consensus 80 ~~F~C~-Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~ 115 (225)
.+|+|. || +||+..|+|||..||.|||||.++
T Consensus 69 ~~f~C~~~g----~Ci~~~~~Cdg~~dC~d~sdE~~c 101 (537)
T 3ojy_B 69 EGFVCAQTG----RCVNRRLLCNGDNDCGDQSDEANC 101 (537)
T ss_dssp SSEECTTTC----CEECGGGTTSSSCCSSSSCTTSSC
T ss_pred CccCcCCCC----cEeeccccCCCCCCCCCccccccC
Confidence 799999 87 899999999999999999999863
No 46
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.99 E-value=3.9e-06 Score=80.85 Aligned_cols=34 Identities=35% Similarity=0.540 Sum_probs=30.6
Q ss_pred CCCCeeecC-CCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 027304 77 CPAGKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYDS 115 (225)
Q Consensus 77 C~~~~F~C~-Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~ 115 (225)
|+ ++|+|. || +||+..|+|||..||.|||||.++
T Consensus 66 c~-~~f~C~~~g----~Ci~~~~~Cdg~~dC~d~sDE~~C 100 (554)
T 3ojy_A 66 CG-QDFQCKETG----RCLKRHLVCNGDQDCLDGSDEDDC 100 (554)
T ss_dssp CS-SSEECSSSC----CEECGGGTTSSSCCSSSCTTSSSC
T ss_pred CC-CcCccCCCC----EEcccccccCCcccCCCccccccC
Confidence 53 799999 77 899999999999999999999863
No 47
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=97.39 E-value=9.8e-05 Score=74.39 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=29.1
Q ss_pred CeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304 80 GKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114 (225)
Q Consensus 80 ~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~ 114 (225)
..|+|.+| +||+..|+|||..||.|+|||.+
T Consensus 121 ~~F~C~~g----~ci~~~~~c~g~~dC~d~sde~~ 151 (913)
T 3t5o_A 121 NKFRCDSG----RCIARKLECNGENDCGDNSDERD 151 (913)
T ss_dssp SEEECTTS----CEEEGGGSSSSSCCSSSSGGGTT
T ss_pred cccccCCC----ceEccceecCCcccCCCcccccc
Confidence 67999987 89999999999999999999975
No 48
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=97.32 E-value=7.6e-05 Score=75.16 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=30.0
Q ss_pred CceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304 42 EVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74 (225)
Q Consensus 42 ~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c 74 (225)
+.|+|.+| .||+..|+|||..||.|+|||.+|
T Consensus 121 ~~F~C~~g-~ci~~~~~c~g~~dC~d~sde~~C 152 (913)
T 3t5o_A 121 NKFRCDSG-RCIARKLECNGENDCGDNSDERDC 152 (913)
T ss_dssp SEEECTTS-CEEEGGGSSSSSCCSSSSGGGTTC
T ss_pred cccccCCC-ceEccceecCCcccCCCccccccC
Confidence 68999998 799999999999999999999875
No 49
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=77.59 E-value=1.6 Score=29.22 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhchhhccc
Q 027304 204 IIFLVFLWIMHHSVRSKR 221 (225)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ 221 (225)
++.+++++++|||.+.++
T Consensus 25 ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHhhhhhhhhc
Confidence 333444444454444433
No 50
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=76.73 E-value=1.6 Score=29.06 Aligned_cols=13 Identities=0% Similarity=-0.151 Sum_probs=5.0
Q ss_pred HHHHHhhchhhcc
Q 027304 208 VFLWIMHHSVRSK 220 (225)
Q Consensus 208 ~~~~~~~~~~~~~ 220 (225)
+.+|++.||.|.+
T Consensus 29 ~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 29 LGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHhhhhHhh
Confidence 3334444433333
No 51
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=27.53 E-value=40 Score=22.36 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhhch
Q 027304 202 FVIIFLVFLWIMHHS 216 (225)
Q Consensus 202 ~~~~~~~~~~~~~~~ 216 (225)
++++-++++.++|||
T Consensus 24 ~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 24 VVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheehh
Confidence 333334444444443
No 52
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=23.58 E-value=43 Score=20.07 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=9.9
Q ss_pred cccCCCccCCCCCCCCCC
Q 027304 93 FIFSSRVNDRICDCCDGS 110 (225)
Q Consensus 93 CI~~s~VCDGv~DC~DGS 110 (225)
|++..|.|-....|..||
T Consensus 1 C~psgq~Cp~~e~CCSGs 18 (26)
T 1hvw_A 1 CIPSGQPCPYNENCCSQS 18 (26)
T ss_dssp CBCTTSBCSSTTSBSSCC
T ss_pred CccCCCcCCCCccccccc
Confidence 455556666555555444
No 53
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.47 E-value=56 Score=23.71 Aligned_cols=9 Identities=0% Similarity=0.124 Sum_probs=3.6
Q ss_pred HHHHHhhch
Q 027304 208 VFLWIMHHS 216 (225)
Q Consensus 208 ~~~~~~~~~ 216 (225)
-++|-++++
T Consensus 27 cI~ccvkcr 35 (70)
T 2klu_A 27 GIFFSVRSR 35 (70)
T ss_dssp HHHHHHHSS
T ss_pred HHHHhhHHH
Confidence 333334443
No 54
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=22.24 E-value=39 Score=20.97 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=3.4
Q ss_pred HHHHHhhc
Q 027304 208 VFLWIMHH 215 (225)
Q Consensus 208 ~~~~~~~~ 215 (225)
+++|+++|
T Consensus 31 ~~~~~~~r 38 (41)
T 2k9y_A 31 GVGFFIHR 38 (41)
T ss_dssp HHHHSSSS
T ss_pred HHheeEee
Confidence 33444444
No 55
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=20.93 E-value=48 Score=22.30 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=33.0
Q ss_pred hHHHHHHHhhhhhccccCccccccccccccccccccceeehhhHHHHHHHHHHHHHhhchhhccccc
Q 027304 157 KEDLIERLGVLFVHNRYAPVKLKSLRDLSFSLVFADVKMVVILQSFVIIFLVFLWIMHHSVRSKRRH 223 (225)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (225)
.+++++.|-..|-.+.|-.... +..+.-+++|----|-.||-.||.+.||+.
T Consensus 15 t~~q~~~Le~~F~~~~yp~~~~---------------r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 15 TDDQLRVLRQYFDINNSPSEEQ---------------IKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CHHHHHHHHHHHHHCSSCCTTH---------------HHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHCCCCCHHH---------------HHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4666667777787777654332 222333444444556679999999988764
Done!