BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027305
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FXT|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|E Chain E, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|F Chain F, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|G Chain G, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|H Chain H, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
Length = 113
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 16 LNGINDNYGGVVVQMN-----EPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLV 70
L G D +GG+ V++ + +D F L++++ WR + + VW+ +PI + +
Sbjct: 25 LQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFI 84
Query: 71 EPAVKEGFWFHHAEPNYLMLVYWIPGG 97
PA GF FHHAE + L W+ G
Sbjct: 85 APAASLGFCFHHAESDSSTLTLWLREG 111
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 96 GGANTLPANASHRVGV-GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVA 154
G N + SH+VGV GA R++LVVQ+ R + +WKFP G+ + EDI
Sbjct: 14 GTENLYFQSMSHQVGVAGAVFDESTRKILVVQD---RNKLKNMWKFPGGLSEPEEDIGDT 70
Query: 155 AVREVKEETSIDTEFVEVLAFR 176
AVREV EET I +EF VL+ R
Sbjct: 71 AVREVFEETGIKSEFRSVLSIR 92
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
+G G V N KREVL++++ G W FP G + GE + AAVREV EET + E
Sbjct: 3 LGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56
Query: 169 -FVEVLAFRYV 178
+ + RYV
Sbjct: 57 VLLPLYPTRYV 67
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 111 VGAFVMNGKREVLVVQENS--GRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
G ++N + ++L+VQE G G+W P+G V++GE+ AAVRE EET +
Sbjct: 16 AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVR 75
Query: 169 FVEVLAF---RY---VIFLKRIFYVESKP 191
V+ L R+ V+ L+ ++ E +P
Sbjct: 76 PVKFLGAYLGRFPDGVLILRHVWLAEPEP 104
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
+G G V N KREVL++++ G W FP G + GE + AAVREV E+T + E
Sbjct: 3 LGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEQTGVRAE 56
Query: 169 -FVEVLAFRYV 178
+ + RYV
Sbjct: 57 VLLPLYPTRYV 67
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 95 PGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVA 154
P G+ P +R VG +MN +++ + R W+ P G +DEGED A
Sbjct: 2 PLGSMDSPPEG-YRRNVGICLMNNDKKIFA----ASRLDIPDAWQMPQGGIDEGEDPRNA 56
Query: 155 AVREVKEETSIDTEFVEVLA 174
A+RE++EET + + EV+A
Sbjct: 57 AIRELREETGVTS--AEVIA 74
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 97 GANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAV 156
G ++P +S + V +++ VL+ Q G+ G+W+FP G V++GE + +
Sbjct: 18 GPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSL-AGLWEFPGGKVEQGETPEASLI 76
Query: 157 REVKEETSIDTE 168
RE++EE + +
Sbjct: 77 RELEEELGVHVQ 88
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 95 PGGANTLPANASHRVG--VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDIC 152
P G P V V A ++ + EVL++QE RG+ W P G ++ GE I
Sbjct: 5 PAGEPPAPVRLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGS--WYLPAGRMEPGETIV 62
Query: 153 VAAVREVKEETSIDTEFVEVLA 174
A REVKEE + E +L+
Sbjct: 63 EALQREVKEEAGLHCEPETLLS 84
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
A +++ VL+ Q G+ G+W+FP G ++ GE A VRE+ EE +DT
Sbjct: 11 TAAALIDPDGRVLLAQRPPGKSL-AGLWEFPGGKLEPGETPEAALVRELAEELGVDT 66
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 114 FVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
+ + KR +++ + + F W+ TG V+EGE AA+REVKEE +ID
Sbjct: 17 YAQDTKRVLMLQRRDDPDF-----WQSVTGSVEEGETAPQAAMREVKEEVTID 64
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 163
+ +R VG + N + +V+ + RF G W+FP G ++ GE A RE+ EE
Sbjct: 4 DDGYRPNVGIVICNRQGQVMWAR----RF-GQHSWQFPQGGINPGESAEQAMYRELFEEV 58
Query: 164 SIDTEFVEVLA-----FRYVIFLKRIFYVESKPL 192
+ + V +LA RY + KR+ ++KP+
Sbjct: 59 GLSRKDVRILASTRNWLRYKL-PKRLVRWDTKPV 91
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 116 MNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
+ GK E L++Q + W P G VD GED AA+RE KEE +I E
Sbjct: 14 LAGKIEFLLLQASYPPHH----WTPPKGHVDPGEDEWQAAIRETKEEANITKE 62
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175
++L+VQEN G +W P G D + + V+EVKEE +D E V+A
Sbjct: 82 KILLVQENDG------LWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAI 130
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA---FRY 177
EVL+++ S +W FP G ++ GE AVREV EET + E ++ + + Y
Sbjct: 16 EVLLIKTPSN------VWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWY 69
Query: 178 VIFLKRIF 185
+ +RIF
Sbjct: 70 TLKGERIF 77
>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
pdb|4DYW|B Chain B, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
Length = 157
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 97 GANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAV 156
G ++ RVG GA ++ R +L+ ++ R G W P G VD E + A
Sbjct: 18 GPGSMQHTEQPRVGCGAAIVRDGRILLIKRK---RAPEAGCWGLPGGKVDWLEPVERAVC 74
Query: 157 REVKEETSIDTEFVEVL 173
RE++EE I E +L
Sbjct: 75 REIEEELGIALERATLL 91
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172
A V++ + + LVV+E G +W P G ++ E + AA RE+ EET I +
Sbjct: 9 ACVVHAEGKFLVVEET---INGKALWNQPAGHLEADETLVEAAARELWEETGISAQ---- 61
Query: 173 LAFRYVIFLKRIFYVESKPLLFIIFQFEVYTSLPV 207
++ I + + + P L +F E+ P
Sbjct: 62 --PQHFIRMHQWIAPDKTPFLRFLFAIELEQICPT 94
>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
Complexed With A Magnesium Ion
Length = 194
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%)
Query: 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172
A VL+ +S G FP G +D GE AA+RE +EE ++D V +
Sbjct: 41 ALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTL 100
Query: 173 LAFRYVIFLKRIFYV 187
L +F F+V
Sbjct: 101 LGELDDVFTPVGFHV 115
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 165
+ V A + N K E L+++ + G W P G V+ E + REV EET I
Sbjct: 9 ISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGI 65
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 163
+ +R VG + N + +V+ + RF G W+FP G ++ GE A R + EE
Sbjct: 4 DDGYRPNVGIVICNRQGQVMWAR----RF-GQHSWQFPQGGINPGESAEQAMYRALFEEV 58
Query: 164 SIDTEFVEVLA-----FRYVIFLKRIFYVESKPL 192
+ + V +LA RY + KR+ ++KP+
Sbjct: 59 GLSRKDVRILASTRNWLRYKL-PKRLVRWDTKPV 91
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 136 GIWKFPTGVVDEGEDICVAAVREVKEETSI 165
G W P G VDE E AA RE++EETS+
Sbjct: 67 GKWAVPGGFVDENESAEQAAERELEEETSL 96
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 132 FRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
++ + W FP G +D+ E A+REV EET D
Sbjct: 122 WKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD 156
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 132 FRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
++ + W FP G +D+ E A+REV EET D
Sbjct: 117 WKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD 151
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 135 TGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172
G W+FP G ++ GE A RE+ EE I+ E E+
Sbjct: 47 AGQWEFPGGKIENGETPEEALARELNEELGIEAEVGEL 84
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172
+FP G++D+GE AA+RE++EET + E
Sbjct: 95 EFPAGLIDDGETPEAAALRELEEETGYKGDIAEC 128
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172
+FP G++D+GE AA+RE++EET + E
Sbjct: 81 EFPAGLIDDGETPEAAALRELEEETGYKGDIAEC 114
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172
+FP G++D+GE AA+RE++EET + E
Sbjct: 93 EFPAGLIDDGETPEAAALRELEEETGYKGDIAEC 126
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172
+FP G++D+GE AA+RE++EET + E
Sbjct: 93 EFPAGLIDDGETPEAAALRELEEETGYKGDIAEC 126
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172
+FP G++D+GE AA+RE++EET + E
Sbjct: 80 EFPAGLIDDGETPEAAALRELEEETGYKGDIAEC 113
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 165
+VL++Q FR + W P G V+ E + +RE KEET +
Sbjct: 57 KVLLIQRKGHPFRNS--WALPGGFVNRNESTEDSVLRETKEETGV 99
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 119 KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYV 178
+ +VL+ + +RG W P G + E + A RE EE + E E+ A +
Sbjct: 50 ENKVLLCKRAIAPYRGK--WTLPAGFXENNETLVQGAARETLEEANARVEIRELYAVYSL 107
Query: 179 IFLKRIFYVESKPLLFIIF 197
+ +++ + LL + F
Sbjct: 108 PHISQVYXLFRAKLLDLDF 126
>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
Thermus Thermophilus Hb8
pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
From Thermus Thermophilus Hb8
pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
From Thermus Thermophilus Hb8
Length = 182
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 126 QENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
+ +G+F + + P G VDEGE AA RE++EE + E
Sbjct: 62 RHPTGKF----LLEVPAGKVDEGETPEAAARRELREEVGAEAE 100
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 102 PANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKE 161
P + + V A ++ ++L+ Q + G+W+F G V+ E A VRE++E
Sbjct: 2 PLGSMKMIEVVAAIIERDGKILLAQ-RPAQSDQAGLWEFAGGKVEPDESQRQALVRELRE 60
Query: 162 ETSIDTEFVEVLAFRYVIFLKRIFYVES 189
E I+ E +A RI ++ +
Sbjct: 61 ELGIEATVGEYVASHQREVSGRIIHLHA 88
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 138 WKFPTGVVDEGEDICVAAVREVKEETSID-TEFVEVLAF 175
W FP G + + E+ +REVKEE D T++++ F
Sbjct: 30 WSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQF 68
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
V A + N + E+L ++ G W P G ++ GE A +REV EET + +
Sbjct: 24 VAAVIKNEQGELLF------QYPGGEYWSLPAGAIEPGETPEEAVIREVWEETGLKVQ 75
>pdb|3GWY|A Chain A, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
pdb|3GWY|B Chain B, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
Length = 140
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGI-WKFPTGVVDEGEDICVAAVREVKEETSIDTEF 169
V A + G++ L VQ +F T ++FP G V+EGE + A RE+ EE E
Sbjct: 9 VAAVIRLGEK-YLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEV 67
Query: 170 VEVL 173
E L
Sbjct: 68 GEKL 71
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 115 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
V N E L++Q + G W P G V+ GED A+RE +EE I+
Sbjct: 19 VDNNAIEFLLLQASDGIHH----WTPPKGHVEPGEDDLETALRETQEEAGIEA 67
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175
G + P G+++ GED AA RE+ EET + + + ++
Sbjct: 58 GLAPLEIPAGLIEPGEDPLEAARRELAEETGLSGDLTYLFSY 99
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
V V A V+ +L+VQ + G +W P G ++ E I A +RE+ EET+I+
Sbjct: 209 VTVDALVIVNDH-ILMVQRKA--HPGKDLWALPGGFLECDETIAQAIIRELFEETNIN 263
>pdb|3GZ5|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ5|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ6|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
pdb|3GZ6|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
Length = 240
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 121 EVLVVQENSGRFRGTGIWKFPTGVVDE--GEDICVAAVREVKEETSIDTEFVEVLA 174
+VL+VQ ++ F G+W P G +DE E + +R++ E+T++ ++E L
Sbjct: 38 KVLLVQRSNHPF--LGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLC 91
>pdb|3GZ8|A Chain A, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|B Chain B, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|C Chain C, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|D Chain D, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
Length = 162
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDE--GEDICVAAVREVKEETSIDTEFVEVLA 174
+ + +VL+VQ ++ F G+W P G +DE E + +R++ E+T++ ++E L
Sbjct: 34 DQQLKVLLVQRSNHPF--LGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLC 91
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
V G V NGK VL+V + + G++ +P G V+ E A RE +EET I
Sbjct: 3 VTSGVLVENGK--VLLV-----KHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGI--- 52
Query: 169 FVEVLAFRYVIFLKRIFYVESKPLLFIIFQ 198
VE + F Y I + +P+ +I +
Sbjct: 53 VVEPIGFTYGIIDENAV---ERPMPLVILE 79
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175
G + P G+++ GED AA RE+ E+T + + + ++
Sbjct: 58 GLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYLFSY 99
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175
G + P G+++ GED AA R++ EET + + + ++
Sbjct: 58 GLAPLEIPAGLIEPGEDPLEAARRQLAEETGLSGDLTYLFSY 99
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 115 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174
V N E L++Q + G W P G V+ GED A+R +EE I+ + ++
Sbjct: 24 VDNNAIEFLLLQASDGIHH----WTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIE 79
Query: 175 FRYVIFLKRIFYV-ESKPLLFIIFQFEV 201
F + + YV +KP I + EV
Sbjct: 80 G----FKRELNYVARNKPKTVIYWLAEV 103
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEETSI 165
FP G V+ GE AA+REV EET +
Sbjct: 40 SFPGGHVEVGEPCATAAIREVFEETGL 66
>pdb|1I17|A Chain A, Nmr Structure Of Mouse Doppel 51-157
Length = 107
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 112 GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEG 148
GAF+ G++ + R+ W+FP G+ EG
Sbjct: 8 GAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEG 44
>pdb|3Q4I|A Chain A, Crystal Structure Of Cdp-Chase In Complex With Gd3+
pdb|3Q4I|B Chain B, Crystal Structure Of Cdp-Chase In Complex With Gd3+
Length = 205
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
+V + A V ++ + V +++ G+ W P G D G A +EV EET +
Sbjct: 68 KVDIRAVVFQNEKLLFVKEKSDGK------WALPGGWADVGYTPTEVAAKEVFEETGYEV 121
Query: 168 EFVEVLA 174
+ ++LA
Sbjct: 122 DHFKLLA 128
>pdb|1VHZ|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHZ|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 140 FPTGVVDEGEDICVAAVREVKEETSI---DTEFVEVLAFRYVIFLKRIFYVESKPL 192
F G++D GE + AA RE+KEE D F++ L+ F ++ V ++ L
Sbjct: 79 FSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDL 134
>pdb|1Q33|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt9
pdb|1QVJ|A Chain A, Structure Of Nudt9 Complexed With Ribose-5-Phosphate
Length = 292
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 131 RFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 163
+ + G W P G VD GE I RE EE
Sbjct: 145 KRKDCGEWAIPGGXVDPGEKISATLKREFGEEA 177
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 165
R F + EVL+V + R W P G ++ E+ VAAVREV EE +
Sbjct: 42 RAACLCFRSESEEEVLLVSSS----RHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95
>pdb|3Q93|A Chain A, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
pdb|3Q93|B Chain B, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
Length = 176
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
G G W G V EGE I A RE++EE+ + +
Sbjct: 48 GAGRWNGFGGKVQEGETIEDGARRELQEESGLTVD 82
>pdb|2QJO|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|C Chain C, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp
Length = 341
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSI 165
G G+ P G + + E + +RE+KEET +
Sbjct: 226 GLGLIALPGGFIKQNETLVEGMLRELKEETRL 257
>pdb|3Q1P|A Chain A, Crystal Structure Of Cdp-Chase
pdb|3Q1P|B Chain B, Crystal Structure Of Cdp-Chase
Length = 205
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
+V + A V ++ + V +++ G+ W P G D G A +EV EET +
Sbjct: 68 KVDIRAVVFQNEKLLFVKEKSDGK------WALPGGWADVGYTPTEVAAKEVFEETGYEV 121
Query: 168 EFVEVLA 174
+ ++LA
Sbjct: 122 DHFKLLA 128
>pdb|1VHG|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHG|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 140 FPTGVVDEGEDICVAAVREVKEE 162
F G++D GE + AA RE+KEE
Sbjct: 79 FSKGLIDPGESVYEAANRELKEE 101
>pdb|1IRY|A Chain A, Solution Structure Of The Hmth1, A Nucleotide Pool
Sanitization Enzyme
pdb|3ZR0|A Chain A, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR0|B Chain B, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR1|A Chain A, Crystal Structure Of Human Mth1
pdb|3ZR1|B Chain B, Crystal Structure Of Human Mth1
Length = 156
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSI 165
G G W G V EGE I A RE++EE+ +
Sbjct: 28 GAGRWNGFGGKVQEGETIEDGARRELQEESGL 59
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 138 WKFPTGVVDEGEDICVAAVREVKEET 163
W +P G +++ E AAVRE+ EET
Sbjct: 51 WSWPKGKLEQNETHRHAAVREIGEET 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,481,563
Number of Sequences: 62578
Number of extensions: 264424
Number of successful extensions: 699
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 59
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)