Query 027305
Match_columns 225
No_of_seqs 292 out of 2137
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0648 Predicted NUDIX hydrol 100.0 2.5E-31 5.4E-36 227.8 10.4 166 15-180 21-187 (295)
2 cd04679 Nudix_Hydrolase_20 Mem 99.8 5.6E-19 1.2E-23 135.3 13.7 109 108-223 2-110 (125)
3 cd03430 GDPMH GDP-mannose glyc 99.8 3.3E-18 7.1E-23 134.9 14.0 114 106-222 10-126 (144)
4 cd04700 DR1025_like DR1025 fro 99.8 1.5E-17 3.4E-22 130.7 13.8 112 105-224 10-121 (142)
5 cd04683 Nudix_Hydrolase_24 Mem 99.8 1.6E-17 3.5E-22 126.0 13.1 107 110-224 2-110 (120)
6 PRK15434 GDP-mannose mannosyl 99.8 1.7E-17 3.8E-22 133.0 13.5 114 106-223 15-132 (159)
7 cd04684 Nudix_Hydrolase_25 Con 99.8 2E-17 4.3E-22 126.3 12.8 110 110-223 2-112 (128)
8 cd04678 Nudix_Hydrolase_19 Mem 99.7 5E-17 1.1E-21 125.0 13.6 109 108-223 2-112 (129)
9 cd04691 Nudix_Hydrolase_32 Mem 99.7 4.6E-17 1E-21 123.7 12.6 101 111-223 3-103 (117)
10 PLN02325 nudix hydrolase 99.7 6.7E-17 1.5E-21 127.5 13.9 112 103-220 4-117 (144)
11 cd04696 Nudix_Hydrolase_37 Mem 99.7 7.7E-17 1.7E-21 123.5 12.6 108 108-223 2-109 (125)
12 cd03673 Ap6A_hydrolase Diadeno 99.7 4E-17 8.8E-22 125.1 10.7 108 109-224 2-112 (131)
13 cd04671 Nudix_Hydrolase_13 Mem 99.7 1.7E-16 3.7E-21 121.9 13.8 102 110-223 2-105 (123)
14 cd04669 Nudix_Hydrolase_11 Mem 99.7 1.3E-16 2.9E-21 121.9 12.8 85 111-209 3-87 (121)
15 COG1051 ADP-ribose pyrophospha 99.7 6E-17 1.3E-21 128.0 10.7 107 105-219 7-115 (145)
16 cd04687 Nudix_Hydrolase_28 Mem 99.7 2E-16 4.3E-21 121.7 13.0 111 109-223 2-116 (128)
17 cd04681 Nudix_Hydrolase_22 Mem 99.7 1.6E-16 3.5E-21 122.1 11.9 108 110-223 3-110 (130)
18 cd04673 Nudix_Hydrolase_15 Mem 99.7 2E-16 4.4E-21 119.8 12.1 108 109-222 1-108 (122)
19 cd04680 Nudix_Hydrolase_21 Mem 99.7 1.4E-16 3E-21 120.5 11.1 101 110-223 2-103 (120)
20 cd03674 Nudix_Hydrolase_1 Memb 99.7 1.8E-16 3.9E-21 123.9 11.8 109 109-222 3-117 (138)
21 cd04670 Nudix_Hydrolase_12 Mem 99.7 1.8E-16 3.8E-21 121.7 11.3 67 107-176 1-67 (127)
22 cd04682 Nudix_Hydrolase_23 Mem 99.7 1.4E-16 3E-21 121.6 10.4 105 111-222 3-108 (122)
23 cd04677 Nudix_Hydrolase_18 Mem 99.7 3.5E-16 7.5E-21 120.4 12.6 111 107-223 6-117 (132)
24 cd04511 Nudix_Hydrolase_4 Memb 99.7 4.4E-16 9.6E-21 120.3 13.0 108 101-222 6-113 (130)
25 cd04688 Nudix_Hydrolase_29 Mem 99.7 5.2E-16 1.1E-20 118.9 13.1 105 110-223 3-113 (126)
26 cd03424 ADPRase_NUDT5 ADP-ribo 99.7 2.7E-16 5.8E-21 122.1 11.5 108 108-223 2-110 (137)
27 PF00293 NUDIX: NUDIX domain; 99.7 4.1E-16 8.9E-21 119.3 12.3 112 108-223 2-114 (134)
28 PRK09438 nudB dihydroneopterin 99.7 1.2E-16 2.6E-21 126.0 9.4 110 107-222 6-123 (148)
29 cd03675 Nudix_Hydrolase_2 Cont 99.7 4.2E-16 9.1E-21 120.6 12.2 105 110-223 2-106 (134)
30 PRK10776 nucleoside triphospha 99.7 7.2E-16 1.6E-20 117.7 13.3 90 110-207 6-95 (129)
31 cd03671 Ap4A_hydrolase_plant_l 99.7 3.7E-16 7.9E-21 123.4 11.9 114 107-224 2-127 (147)
32 cd04699 Nudix_Hydrolase_39 Mem 99.7 3.1E-16 6.7E-21 119.8 11.1 108 109-223 2-109 (129)
33 PRK10546 pyrimidine (deoxy)nuc 99.7 7.1E-16 1.5E-20 119.3 13.3 90 111-208 6-95 (135)
34 cd04689 Nudix_Hydrolase_30 Mem 99.7 6.3E-16 1.4E-20 118.3 12.3 106 109-223 2-109 (125)
35 cd04672 Nudix_Hydrolase_14 Mem 99.7 6.4E-16 1.4E-20 118.1 12.0 105 108-222 2-106 (123)
36 cd03427 MTH1 MutT homolog-1 (M 99.7 5.4E-16 1.2E-20 120.3 11.7 89 111-207 4-92 (137)
37 cd04676 Nudix_Hydrolase_17 Mem 99.7 1.5E-15 3.3E-20 115.6 13.6 109 109-223 3-112 (129)
38 PRK11762 nudE adenosine nucleo 99.7 1.1E-15 2.4E-20 125.4 12.7 107 110-224 49-155 (185)
39 TIGR00586 mutt mutator mutT pr 99.7 2.7E-15 5.8E-20 114.7 13.5 91 109-207 5-95 (128)
40 cd03426 CoAse Coenzyme A pyrop 99.7 5E-16 1.1E-20 124.1 9.8 108 110-224 4-114 (157)
41 PRK15472 nucleoside triphospha 99.7 1.2E-15 2.6E-20 119.3 11.0 62 110-171 5-66 (141)
42 cd04690 Nudix_Hydrolase_31 Mem 99.6 1.6E-15 3.5E-20 114.6 10.8 100 111-222 3-104 (118)
43 cd04686 Nudix_Hydrolase_27 Mem 99.6 1.6E-15 3.6E-20 117.5 11.0 108 110-223 2-114 (131)
44 cd04697 Nudix_Hydrolase_38 Mem 99.6 1.5E-15 3.3E-20 116.7 10.2 105 110-223 2-107 (126)
45 cd04664 Nudix_Hydrolase_7 Memb 99.6 1.8E-15 4E-20 116.3 10.2 108 110-223 3-113 (129)
46 cd03429 NADH_pyrophosphatase N 99.6 9.2E-16 2E-20 118.9 8.5 102 110-224 2-103 (131)
47 PRK05379 bifunctional nicotina 99.6 4.7E-15 1E-19 132.4 13.9 114 107-224 202-318 (340)
48 cd02885 IPP_Isomerase Isopente 99.6 2.6E-15 5.7E-20 120.8 10.9 112 108-223 30-143 (165)
49 cd03672 Dcp2p mRNA decapping e 99.6 2.3E-15 4.9E-20 119.0 10.3 101 110-223 3-106 (145)
50 cd04692 Nudix_Hydrolase_33 Mem 99.6 4.4E-15 9.6E-20 116.7 10.9 113 109-224 3-123 (144)
51 PRK00241 nudC NADH pyrophospha 99.6 6.6E-15 1.4E-19 126.6 12.1 113 97-223 121-233 (256)
52 cd04693 Nudix_Hydrolase_34 Mem 99.6 4E-15 8.8E-20 114.2 9.7 62 110-172 2-64 (127)
53 cd03428 Ap4A_hydrolase_human_l 99.6 4.1E-15 8.8E-20 114.2 9.5 104 109-223 3-110 (130)
54 cd04666 Nudix_Hydrolase_9 Memb 99.6 1.2E-14 2.6E-19 111.6 11.9 104 111-223 3-110 (122)
55 cd03425 MutT_pyrophosphohydrol 99.6 1.6E-14 3.5E-19 108.9 12.3 101 111-222 4-104 (124)
56 PRK10707 putative NUDIX hydrol 99.6 1.6E-14 3.5E-19 119.1 12.6 109 110-225 32-143 (190)
57 cd04694 Nudix_Hydrolase_35 Mem 99.6 1.5E-14 3.2E-19 114.1 11.8 70 109-178 2-75 (143)
58 PRK00714 RNA pyrophosphohydrol 99.6 1.3E-14 2.8E-19 115.9 11.5 67 106-176 6-72 (156)
59 cd04667 Nudix_Hydrolase_10 Mem 99.6 1.8E-14 3.9E-19 108.3 11.4 92 114-223 5-96 (112)
60 cd04695 Nudix_Hydrolase_36 Mem 99.6 9.7E-15 2.1E-19 112.9 10.1 99 117-223 11-109 (131)
61 PRK15393 NUDIX hydrolase YfcD; 99.6 1.3E-14 2.9E-19 118.5 11.3 107 109-224 38-145 (180)
62 cd04661 MRP_L46 Mitochondrial 99.6 1.7E-14 3.8E-19 111.9 10.2 98 119-222 12-114 (132)
63 cd04685 Nudix_Hydrolase_26 Mem 99.6 3.4E-14 7.3E-19 110.7 11.2 93 110-205 2-95 (133)
64 cd02883 Nudix_Hydrolase Nudix 99.6 6.6E-14 1.4E-18 104.6 12.3 106 110-223 2-107 (123)
65 PLN03143 nudix hydrolase; Prov 99.6 2.2E-13 4.8E-18 118.6 16.3 166 4-173 22-196 (291)
66 PRK03759 isopentenyl-diphospha 99.5 6E-14 1.3E-18 115.0 11.7 113 108-224 34-148 (184)
67 TIGR00052 nudix-type nucleosid 99.5 4.5E-14 9.7E-19 116.0 10.1 109 108-223 44-160 (185)
68 cd04674 Nudix_Hydrolase_16 Mem 99.5 2E-13 4.4E-18 104.2 12.9 104 110-223 6-110 (118)
69 cd04662 Nudix_Hydrolase_5 Memb 99.5 2.2E-13 4.8E-18 104.9 12.4 109 110-219 2-125 (126)
70 TIGR02150 IPP_isom_1 isopenten 99.5 1.6E-13 3.4E-18 109.9 11.5 110 107-224 26-138 (158)
71 cd04663 Nudix_Hydrolase_6 Memb 99.5 3.7E-13 7.9E-18 103.9 12.2 102 111-224 3-112 (126)
72 PRK08999 hypothetical protein; 99.5 3.9E-13 8.4E-18 118.4 13.3 93 110-210 7-99 (312)
73 PRK10729 nudF ADP-ribose pyrop 99.5 4E-13 8.6E-18 111.8 12.6 109 109-224 50-167 (202)
74 cd03676 Nudix_hydrolase_3 Memb 99.5 8.4E-13 1.8E-17 107.6 13.3 110 113-224 39-154 (180)
75 PLN02709 nudix hydrolase 99.5 3.6E-13 7.7E-18 113.0 11.2 99 120-225 51-152 (222)
76 cd04665 Nudix_Hydrolase_8 Memb 99.5 8.6E-13 1.9E-17 100.8 12.3 83 111-207 3-85 (118)
77 TIGR02705 nudix_YtkD nucleosid 99.5 1.2E-12 2.7E-17 104.4 13.0 83 109-205 25-107 (156)
78 PRK15009 GDP-mannose pyrophosp 99.4 2.9E-12 6.2E-17 105.8 12.0 108 109-224 46-162 (191)
79 COG2816 NPY1 NTP pyrophosphohy 99.3 2E-12 4.4E-17 111.0 7.1 125 77-219 118-243 (279)
80 KOG3084 NADH pyrophosphatase I 99.2 5.1E-11 1.1E-15 103.1 6.6 74 104-179 183-256 (345)
81 COG0494 MutT NTP pyrophosphohy 99.2 2.6E-10 5.5E-15 87.0 9.4 52 120-175 24-78 (161)
82 PLN02552 isopentenyl-diphospha 99.1 5.1E-10 1.1E-14 95.7 11.6 63 107-169 55-135 (247)
83 KOG2839 Diadenosine and diphos 99.1 1E-10 2.2E-15 90.8 5.5 68 106-177 7-77 (145)
84 cd03670 ADPRase_NUDT9 ADP-ribo 99.1 8.8E-10 1.9E-14 90.4 10.7 43 120-167 49-91 (186)
85 KOG3041 Nucleoside diphosphate 99.0 3.7E-09 8E-14 86.1 11.8 97 121-223 89-189 (225)
86 PLN02791 Nudix hydrolase homol 99.0 2.8E-09 6.1E-14 103.4 11.5 117 107-224 31-154 (770)
87 cd03431 DNA_Glycosylase_C DNA 99.0 8.9E-09 1.9E-13 77.0 11.3 80 114-204 8-87 (118)
88 KOG3069 Peroxisomal NUDIX hydr 98.8 1.1E-08 2.4E-13 85.4 7.6 111 110-224 45-159 (246)
89 PF14815 NUDIX_4: NUDIX domain 98.6 2.5E-07 5.4E-12 69.6 8.0 86 113-207 2-87 (114)
90 PLN02839 nudix hydrolase 98.3 5E-05 1.1E-09 68.1 15.4 151 34-205 147-304 (372)
91 COG4119 Predicted NTP pyrophos 97.9 2.3E-05 5E-10 59.9 5.7 58 110-168 5-68 (161)
92 KOG4195 Transient receptor pot 97.6 5.2E-05 1.1E-09 63.1 3.3 39 121-164 140-178 (275)
93 COG1443 Idi Isopentenyldiphosp 97.6 0.00017 3.8E-09 58.0 6.1 67 109-175 34-101 (185)
94 PRK10880 adenine DNA glycosyla 96.6 0.0098 2.1E-07 53.6 7.9 78 110-202 232-309 (350)
95 KOG2937 Decapping enzyme compl 96.3 0.00046 9.9E-09 60.7 -2.1 55 109-168 83-138 (348)
96 KOG4432 Uncharacterized NUDIX 96.3 0.019 4.1E-07 50.1 7.5 62 136-202 79-140 (405)
97 PF13869 NUDIX_2: Nucleotide h 95.9 0.036 7.7E-07 45.5 7.3 53 109-167 44-99 (188)
98 KOG1689 mRNA cleavage factor I 94.8 0.061 1.3E-06 43.3 5.1 39 120-164 84-122 (221)
99 KOG0142 Isopentenyl pyrophosph 92.6 0.12 2.7E-06 42.7 3.3 101 109-210 53-168 (225)
100 COG4112 Predicted phosphoester 92.3 2 4.4E-05 34.5 9.6 63 114-177 67-142 (203)
101 TIGR01084 mutY A/G-specific ad 91.9 0.36 7.9E-06 42.1 5.6 33 110-143 229-261 (275)
102 KOG4432 Uncharacterized NUDIX 91.0 0.51 1.1E-05 41.4 5.4 36 137-172 285-320 (405)
103 COG1194 MutY A/G-specific DNA 88.2 1.3 2.8E-05 39.7 6.0 46 101-147 228-273 (342)
104 PRK13910 DNA glycosylase MutY; 80.7 2.5 5.5E-05 37.1 4.3 29 111-142 189-217 (289)
105 KOG4548 Mitochondrial ribosoma 80.6 2.5 5.5E-05 36.2 4.1 45 120-167 139-184 (263)
106 PF03487 IL13: Interleukin-13; 69.0 4.7 0.0001 24.6 2.0 25 139-163 12-36 (43)
107 KOG4313 Thiamine pyrophosphoki 62.4 30 0.00065 29.9 6.4 47 121-168 149-197 (306)
108 KOG2937 Decapping enzyme compl 44.0 5.1 0.00011 35.7 -1.0 67 98-168 228-296 (348)
109 PF12860 PAS_7: PAS fold 42.9 11 0.00024 27.4 0.7 43 110-157 5-47 (115)
110 PF07026 DUF1317: Protein of u 37.6 99 0.0021 20.5 4.5 15 136-150 22-36 (60)
111 PF14443 DBC1: DBC1 35.3 1.8E+02 0.0039 22.4 6.3 67 136-202 24-95 (126)
112 PF09505 Dimeth_Pyl: Dimethyla 32.4 25 0.00055 31.6 1.4 24 144-167 408-431 (466)
113 TIGR02382 wecD_rffC TDP-D-fuco 23.6 1.5E+02 0.0032 23.6 4.5 42 40-81 142-183 (191)
114 PF11090 DUF2833: Protein of u 21.4 1.8E+02 0.0038 20.9 3.8 47 35-82 37-83 (86)
115 PF10150 RNase_E_G: Ribonuclea 20.5 44 0.00095 29.0 0.7 54 1-54 18-74 (271)
116 cd09232 Snurportin-1_C C-termi 20.3 36 0.00077 27.9 0.1 46 109-155 30-78 (186)
No 1
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-31 Score=227.77 Aligned_cols=166 Identities=61% Similarity=0.978 Sum_probs=158.5
Q ss_pred ceeccccCCCcEEEec-CCCCChHHHHHHHHHHHHHHHHcCcceEEEEcccccccchHHHHhcCceeeccCCceEEEEEe
Q 027305 15 FLNGINDNYGGVVVQM-NEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYW 93 (225)
Q Consensus 15 ~~~~~~d~~~gv~i~~-~~~~~~~~f~~~l~~~~~~w~~~~~~~iw~~~~~~~~~~~~~~~~~gf~~h~~~~~~~~l~~~ 93 (225)
.+.+..|+|+||.++. ..+.|...|.+.++.|+++|+.+|++++|+++|...+++++.+.++||.|||+...|+|+..|
T Consensus 21 ~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~~~l~~W 100 (295)
T KOG0648|consen 21 LLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHAESLYVMLTSW 100 (295)
T ss_pred hhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecccccceeeeee
Confidence 5689999999999999 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCcceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 027305 94 IPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173 (225)
Q Consensus 94 l~~~~~~~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l 173 (225)
+++.+.++|.++.++++++++|+|.+++||+++...+.....|.|.+|+|.|++||++.++|+||++||||++..+..++
T Consensus 101 l~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVl 180 (295)
T KOG0648|consen 101 LREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVL 180 (295)
T ss_pred eccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHH
Confidence 99999999999999999999999998999999987777777899999999999999999999999999999999999999
Q ss_pred EEEEEEe
Q 027305 174 AFRYVIF 180 (225)
Q Consensus 174 ~~~~~~~ 180 (225)
..++.|-
T Consensus 181 a~r~~H~ 187 (295)
T KOG0648|consen 181 AFRRAHN 187 (295)
T ss_pred HHHhhhc
Confidence 8887664
No 2
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=5.6e-19 Score=135.28 Aligned_cols=109 Identities=23% Similarity=0.306 Sum_probs=85.7
Q ss_pred eeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeee
Q 027305 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYV 187 (225)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 187 (225)
+++|+++|++.++++||++|...+ ..+.|.+|||++++||++.+||+||++||||+++....+++.....+. .
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~-----~ 74 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAP--EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIE-----E 74 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCC--CCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeeccc-----C
Confidence 578999999988999999987543 358999999999999999999999999999999988888776554322 1
Q ss_pred CCccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 188 ESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 188 ~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
...+...++|.+....+.+...+.+|..+.-|+++.
T Consensus 75 ~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~ 110 (125)
T cd04679 75 PPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALD 110 (125)
T ss_pred CCCeEEEEEEEEeecCCccccCCCccccEEEEeCHH
Confidence 345667888999888777655455566666666654
No 3
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.79 E-value=3.3e-18 Score=134.93 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=84.4
Q ss_pred cceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccce--eEEEEEEEEeeee
Q 027305 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV--EVLAFRYVIFLKR 183 (225)
Q Consensus 106 ~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~--~~l~~~~~~~~~~ 183 (225)
++.++|+++|++.+++|||+||...+ .+|.|.+|||++++|||+.+||+||++||||+++... ++++...+.+...
T Consensus 10 ~p~v~v~~vI~~~~g~vLl~~R~~~p--~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~ 87 (144)
T cd03430 10 TPLVSIDLIVENEDGQYLLGKRTNRP--AQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDN 87 (144)
T ss_pred CCeEEEEEEEEeCCCeEEEEEccCCC--CCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccc
Confidence 45678999999988999999997654 3589999999999999999999999999999998776 7777765543321
Q ss_pred eee-eCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEec
Q 027305 184 IFY-VESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLI 222 (225)
Q Consensus 184 ~~~-~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~ 222 (225)
... ....+....+|.+....+.+ ...+.+..+.-|+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~ 126 (144)
T cd03430 88 FFGDDFSTHYVVLGYVLKLSSNEL-LLPDEQHSEYQWLTS 126 (144)
T ss_pred cccCCCccEEEEEEEEEEEcCCcc-cCCchhccEeEEecH
Confidence 111 12346677888888876653 334445555555554
No 4
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.76 E-value=1.5e-17 Score=130.68 Aligned_cols=112 Identities=26% Similarity=0.299 Sum_probs=82.4
Q ss_pred CcceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeee
Q 027305 105 ASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRI 184 (225)
Q Consensus 105 ~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~ 184 (225)
+....+|++++++.++++||++++.++ .++.|++|||++++||++++||+||++||||+++.....++.....+.
T Consensus 10 ~~~~~av~~vv~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~--- 84 (142)
T cd04700 10 EVEARAAGAVILNERNDVLLVQEKGGP--KKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFD--- 84 (142)
T ss_pred ceeeeeEEEEEEeCCCcEEEEEEcCCC--CCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcC---
Confidence 345568888999988899999886543 368999999999999999999999999999999887776664332211
Q ss_pred eeeCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEeccc
Q 027305 185 FYVESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 185 ~~~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
.......++|.+....+...+....|..+.-|+++..
T Consensus 85 ---~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~e 121 (142)
T cd04700 85 ---DGVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSRED 121 (142)
T ss_pred ---CCcEEEEEEEEEEecCCccccCCCCCEEEEEEECHHH
Confidence 1223455788888755543344446777777777654
No 5
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.6e-17 Score=126.02 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=79.2
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCccc--ceeEEEEEEEEeeeeeeee
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE--FVEVLAFRYVIFLKRIFYV 187 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~--~~~~l~~~~~~~~~~~~~~ 187 (225)
+|.+++.+ +++|||+||...+.. +|.|.+|||++++||++.+||+||++||||+.+. ....++...... .
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~------~ 73 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTGYM-DGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRT------E 73 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCCCC-CCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecC------C
Confidence 46666665 589999998765443 5899999999999999999999999999999886 333444332211 1
Q ss_pred CCccEEEEEEEEEeeCCeeeecCCceeeeEEEEeccc
Q 027305 188 ESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 188 ~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
...+....+|.+....+.+...++++..+..|+++..
T Consensus 74 ~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~ 110 (120)
T cd04683 74 DIESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDA 110 (120)
T ss_pred CCceEEEEEEEEEeecCccccCCCCcEeeEEEEchHH
Confidence 1245667788888888877766667778888887653
No 6
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.76 E-value=1.7e-17 Score=133.04 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=81.0
Q ss_pred cceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccc--eeEEEEEEEEeeee
Q 027305 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRYVIFLKR 183 (225)
Q Consensus 106 ~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~--~~~l~~~~~~~~~~ 183 (225)
...++|+++|.+++++|||+||...+ ..|.|+||||+|++|||+++||+||++||||+++.. ..+++...+.+..
T Consensus 15 ~~~~~v~~vI~~~~g~VLL~kR~~~~--~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~- 91 (159)
T PRK15434 15 TPLISLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDD- 91 (159)
T ss_pred CceEEEEEEEECCCCEEEEEEccCCC--CCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeeccc-
Confidence 34568888888888999999998543 358999999999999999999999999999998743 3556554433321
Q ss_pred eeeeC--CccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 184 IFYVE--SKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 184 ~~~~~--~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
.+... ..+....+|.++...|.+.. ++.+..++-|+.+.
T Consensus 92 ~~~~~~~~~~~i~~~f~~~~~~g~~~~-~~~E~~~~~W~~~~ 132 (159)
T PRK15434 92 NFSGTDFTTHYVVLGFRLRVAEEDLLL-PDEQHDDYRWLTPD 132 (159)
T ss_pred ccCCCccceEEEEEEEEEEecCCcccC-ChHHeeEEEEEeHH
Confidence 11111 23567788999887765443 34456666666543
No 7
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.75 E-value=2e-17 Score=126.32 Aligned_cols=110 Identities=23% Similarity=0.228 Sum_probs=80.8
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
++.++++++ +++||++|.+.+ .++.|.+|||++++||++.+||+||++||||+++.....++.....+...... ..
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~-~~ 77 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGD-YD 77 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCC-ee
Confidence 577777776 899999998765 35999999999999999999999999999999998888887765544321111 12
Q ss_pred ccEEEEEEEEEeeCCeee-ecCCceeeeEEEEecc
Q 027305 190 KPLLFIIFQFEVYTSLPV-CHCGQAMMQRFEVLIA 223 (225)
Q Consensus 190 ~~~~~~~f~~~~~~g~~~-~~e~~e~~~~f~v~~~ 223 (225)
.+...++|.+....+.+. ....++..+.-|+++.
T Consensus 78 ~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~ 112 (128)
T cd04684 78 AHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLD 112 (128)
T ss_pred ccEEEEEEEEEEecCccccCCCCCCceeeEEECHH
Confidence 356778898888766541 2333455566666553
No 8
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=5e-17 Score=124.97 Aligned_cols=109 Identities=31% Similarity=0.379 Sum_probs=83.4
Q ss_pred eeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeee
Q 027305 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYV 187 (225)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 187 (225)
++++++++++.++++||++|.... ..+.|.+|||++++||++.+||.||++||||+++.....++.....+ ..
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~~--~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~-----~~ 74 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGSH--GAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVF-----EE 74 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEe-----CC
Confidence 568899999988999999998643 35899999999999999999999999999999988777776554332 11
Q ss_pred CCccEEEEEEEEEeeCCeeeec--CCceeeeEEEEecc
Q 027305 188 ESKPLLFIIFQFEVYTSLPVCH--CGQAMMQRFEVLIA 223 (225)
Q Consensus 188 ~~~~~~~~~f~~~~~~g~~~~~--e~~e~~~~f~v~~~ 223 (225)
...+....+|.+....+.+... +.++..++-|+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~ 112 (129)
T cd04678 75 EGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWE 112 (129)
T ss_pred CCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHH
Confidence 2456677888888876654443 55666666666543
No 9
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=4.6e-17 Score=123.73 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=73.2
Q ss_pred EEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCc
Q 027305 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESK 190 (225)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (225)
|+++++++ +++||+||.....+.+|.|.||||++++||++++||+||++||||+++.....++..... ...
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~--------~~~ 73 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHP--------TSE 73 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEecc--------CCC
Confidence 45556664 899999987654335699999999999999999999999999999997555544433211 123
Q ss_pred cEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 191 PLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 191 ~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
....++|.+....|.+.. +|..+..|+++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~---~E~~~~~W~~~~ 103 (117)
T cd04691 74 LQLLHYYVVTFWQGEIPA---QEAAEVHWMTAN 103 (117)
T ss_pred eEEEEEEEEEEecCCCCc---ccccccEEcCHH
Confidence 456788888888776654 455566666654
No 10
>PLN02325 nudix hydrolase
Probab=99.74 E-value=6.7e-17 Score=127.53 Aligned_cols=112 Identities=24% Similarity=0.325 Sum_probs=79.3
Q ss_pred CCCcceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeee
Q 027305 103 ANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLK 182 (225)
Q Consensus 103 ~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~ 182 (225)
.+++.++++++++++. ++|||+||...+ +.|.|.+|||+++.||++.+||+||++||||+++...++++.....+..
T Consensus 4 ~~~~p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~ 80 (144)
T PLN02325 4 GEPIPRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLE 80 (144)
T ss_pred CCCCCeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence 3456778888888875 799999987643 3589999999999999999999999999999999988888876543321
Q ss_pred eeeeeCCccEEEEEEEEEeeCCe--eeecCCceeeeEEEE
Q 027305 183 RIFYVESKPLLFIIFQFEVYTSL--PVCHCGQAMMQRFEV 220 (225)
Q Consensus 183 ~~~~~~~~~~~~~~f~~~~~~g~--~~~~e~~e~~~~f~v 220 (225)
. ....+....+|.+....+. +...+..+..++=|+
T Consensus 81 ~---~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~ 117 (144)
T PLN02325 81 E---PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWY 117 (144)
T ss_pred C---CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEE
Confidence 1 1133456667777765443 233344444333333
No 11
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=7.7e-17 Score=123.47 Aligned_cols=108 Identities=22% Similarity=0.295 Sum_probs=77.5
Q ss_pred eeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeee
Q 027305 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYV 187 (225)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 187 (225)
.++|+++|++.++++||+|+.. .++.|.+|||++++|||+.+||+||++||||+++....++......+.. .+ .
T Consensus 2 ~~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~-~~-~ 75 (125)
T cd04696 2 LVTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSE-EF-H 75 (125)
T ss_pred ccEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccC-CC-C
Confidence 3578888999889999998753 2489999999999999999999999999999999877776655443321 11 1
Q ss_pred CCccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 188 ESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 188 ~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
...+.....|.+....+.+.. ..+..+..|+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~W~~~~ 109 (125)
T cd04696 76 KPAHFVLFDFFARTDGTEVTP--NEEIVEWEWVTPE 109 (125)
T ss_pred CccEEEEEEEEEEecCCcccC--CcccceeEEECHH
Confidence 234455666777765444333 3466677777654
No 12
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.72 E-value=4e-17 Score=125.06 Aligned_cols=108 Identities=22% Similarity=0.211 Sum_probs=81.4
Q ss_pred eEEEEEEEeCC---ceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeee
Q 027305 109 VGVGAFVMNGK---REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIF 185 (225)
Q Consensus 109 ~~v~~~v~~~~---~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~ 185 (225)
.++++++++.+ ++|||++|+. .+.|.+|||++++||++.+||.||++||||+++.....++.....+...
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~-----~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~-- 74 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPR-----GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSS-- 74 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCC-----CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCC--
Confidence 46777888765 8999999874 2789999999999999999999999999999988777776654433211
Q ss_pred eeCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEeccc
Q 027305 186 YVESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 186 ~~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
....+....+|.+....+.+......+..+..|+++..
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e 112 (131)
T cd03673 75 -GKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDE 112 (131)
T ss_pred -CCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHH
Confidence 11345667778888776655543566788888887653
No 13
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1.7e-16 Score=121.90 Aligned_cols=102 Identities=27% Similarity=0.328 Sum_probs=75.8
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
.+++++++.++++||++|.+.+. ++.|.+|||++++||++.+||+||++||||+++....+++.... .
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~~--~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~----------~ 69 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRSC--RGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQ----------G 69 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCCC--CCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEcc----------C
Confidence 35667888889999999876542 58999999999999999999999999999999987776654321 1
Q ss_pred ccEEEEEEEEEeeCCeeeec--CCceeeeEEEEecc
Q 027305 190 KPLLFIIFQFEVYTSLPVCH--CGQAMMQRFEVLIA 223 (225)
Q Consensus 190 ~~~~~~~f~~~~~~g~~~~~--e~~e~~~~f~v~~~ 223 (225)
.+...++|.++...|.+... ++.+..+.-|+++.
T Consensus 70 ~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~ 105 (123)
T cd04671 70 GSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNK 105 (123)
T ss_pred CeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHH
Confidence 23456788898887766533 23454455555543
No 14
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1.3e-16 Score=121.91 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=67.1
Q ss_pred EEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCc
Q 027305 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESK 190 (225)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (225)
++++++++++++||++|.... .+.|.||||++++||++.+||+||++||||+++....+++.... .
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~~---~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~-----------~ 68 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKPG---KTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ-----------N 68 (121)
T ss_pred eEEEEEeCCCEEEEEEEecCC---CCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee-----------C
Confidence 566778877899999987542 47899999999999999999999999999999876666654322 1
Q ss_pred cEEEEEEEEEeeCCeeeec
Q 027305 191 PLLFIIFQFEVYTSLPVCH 209 (225)
Q Consensus 191 ~~~~~~f~~~~~~g~~~~~ 209 (225)
....++|.++.+.|.+...
T Consensus 69 ~~~~~~f~~~~~~g~~~~~ 87 (121)
T cd04669 69 GRTEHYFLARVISGKLGLG 87 (121)
T ss_pred CcEEEEEEEEEECCeecCC
Confidence 2346789999988876543
No 15
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.71 E-value=6e-17 Score=128.05 Aligned_cols=107 Identities=26% Similarity=0.314 Sum_probs=77.8
Q ss_pred CcceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeee
Q 027305 105 ASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRI 184 (225)
Q Consensus 105 ~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~ 184 (225)
....+++++++... ++|||++|...+. .|.|.+|||+++.|||+++||.||++||||+++...+++++.......
T Consensus 7 ~~p~~~v~~~i~~~-~~iLLvrR~~~p~--~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd-- 81 (145)
T COG1051 7 RTPLVAVGALIVRN-GRILLVRRANEPG--AGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRD-- 81 (145)
T ss_pred CCcceeeeEEEEeC-CEEEEEEecCCCC--CCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCC--
Confidence 34567788777765 4999999998763 589999999999999999999999999999998888888876543221
Q ss_pred eeeCCccEEEEEEEEEeeCCeeeecCC--ceeeeEEE
Q 027305 185 FYVESKPLLFIIFQFEVYTSLPVCHCG--QAMMQRFE 219 (225)
Q Consensus 185 ~~~~~~~~~~~~f~~~~~~g~~~~~e~--~e~~~~f~ 219 (225)
+..+....+|.+....|++...++ .....+|+
T Consensus 82 ---~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~ 115 (145)
T COG1051 82 ---PRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFP 115 (145)
T ss_pred ---CceeEEEEEEEEEecCCCcccCChhhHhhcceec
Confidence 122444455555555666666663 34444443
No 16
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=2e-16 Score=121.67 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=78.0
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeee-eeeee
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLK-RIFYV 187 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~-~~~~~ 187 (225)
.+|++++++ ++++||++|.... .+.|.+|||++++||++++||+||++||||+.+....++......... ..+..
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~~~---~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~ 77 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHDDG---GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELP 77 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEcCC---CCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCC
Confidence 467777776 5799999987542 478999999999999999999999999999999877777665433211 11112
Q ss_pred CCccEEEEEEEEEeeCCeeee---cCCceeeeEEEEecc
Q 027305 188 ESKPLLFIIFQFEVYTSLPVC---HCGQAMMQRFEVLIA 223 (225)
Q Consensus 188 ~~~~~~~~~f~~~~~~g~~~~---~e~~e~~~~f~v~~~ 223 (225)
...+...++|.+....+.... .+..+..+..|+++.
T Consensus 78 ~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 116 (128)
T cd04687 78 GHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLK 116 (128)
T ss_pred CceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHH
Confidence 345677789999987665321 122334566776654
No 17
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.6e-16 Score=122.15 Aligned_cols=108 Identities=24% Similarity=0.287 Sum_probs=76.4
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
+|++++++.++++||++|...+ .++.|.+|||++++||++.+||.||++||||+++.....++.....+.... ..
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~---~~ 77 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREP--GKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGG---ME 77 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCC--CCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCC---ce
Confidence 5777888888999999987654 258999999999999999999999999999999887777665433222110 11
Q ss_pred ccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 190 KPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 190 ~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
.+....+|.+....+. ...+..+..+..|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~ 110 (130)
T cd04681 78 YDTLDLFFVCQVDDKP-IVKAPDDVAELKWVVPQ 110 (130)
T ss_pred eEEEEEEEEEEeCCCC-CcCChHHhheeEEecHH
Confidence 2234456777764333 33345567777777653
No 18
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=2e-16 Score=119.82 Aligned_cols=108 Identities=31% Similarity=0.428 Sum_probs=77.3
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeC
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (225)
++++++++++ +++||++|.+.+ ..+.|.+|||++++||++++||+||++||||+++.....++.....+.... ...
T Consensus 1 ~~v~~ii~~~-~~vLl~~r~~~~--~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~-~~~ 76 (122)
T cd04673 1 VAVGAVVFRG-GRVLLVRRANPP--DAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAA-GRV 76 (122)
T ss_pred CcEEEEEEEC-CEEEEEEEcCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCC-Ccc
Confidence 3567777775 799999987643 358999999999999999999999999999999887777776654432111 112
Q ss_pred CccEEEEEEEEEeeCCeeeecCCceeeeEEEEec
Q 027305 189 SKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLI 222 (225)
Q Consensus 189 ~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~ 222 (225)
..+...++|.+....+... ...|..+..|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--~~~E~~~~~w~~~ 108 (122)
T cd04673 77 EFHYVLIDFLCRYLGGEPV--AGDDALDARWVPL 108 (122)
T ss_pred ceEEEEEEEEEEeCCCccc--CCcccceeEEECH
Confidence 3355667788887666552 3345566666654
No 19
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.4e-16 Score=120.53 Aligned_cols=101 Identities=25% Similarity=0.275 Sum_probs=75.2
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCccc-ceeEEEEEEEEeeeeeeeeC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE-FVEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~-~~~~l~~~~~~~~~~~~~~~ 188 (225)
++.+++++.++++||++|... +.|.+|||++++||++++||+||++||||+.+. ....++...... .
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~-------~ 69 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSA-------S 69 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCC-------C
Confidence 577788998899999998742 489999999999999999999999999999998 666666544321 1
Q ss_pred CccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 189 SKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 189 ~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
......++|.+....+.. ....+|..+.-++++.
T Consensus 70 ~~~~~~~~f~~~~~~~~~-~~~~~E~~~~~w~~~~ 103 (120)
T cd04680 70 GSWDHVIVFRARADTQPV-IRPSHEISEARFFPPD 103 (120)
T ss_pred CCceEEEEEEecccCCCc-cCCcccEEEEEEECHH
Confidence 234567888888876543 3344555555565543
No 20
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.70 E-value=1.8e-16 Score=123.85 Aligned_cols=109 Identities=22% Similarity=0.157 Sum_probs=72.5
Q ss_pred eEEEEEEEeCC-ceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEE---EEEEeeeee
Q 027305 109 VGVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF---RYVIFLKRI 184 (225)
Q Consensus 109 ~~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~---~~~~~~~~~ 184 (225)
.++++++++++ ++|||++|.. .+.|.+|||++++||++++||+||++||||+++......+. ...+.....
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 77 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGH 77 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEcC-----CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCC
Confidence 46777888887 8999999864 37899999999999999999999999999998776555432 111110000
Q ss_pred eee--CCccEEEEEEEEEeeCCeeeecCCceeeeEEEEec
Q 027305 185 FYV--ESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLI 222 (225)
Q Consensus 185 ~~~--~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~ 222 (225)
... ........+|.+....+.+......|..+..|+++
T Consensus 78 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~ 117 (138)
T cd03674 78 PKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPL 117 (138)
T ss_pred CCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcH
Confidence 000 11223456788887666655323445555555544
No 21
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.8e-16 Score=121.71 Aligned_cols=67 Identities=63% Similarity=0.925 Sum_probs=58.1
Q ss_pred ceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEE
Q 027305 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR 176 (225)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~ 176 (225)
|.++|+++|++++++|||++|+.. .++.|.+|||++++|||+.+||.||++||||+++.....++..
T Consensus 1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~ 67 (127)
T cd04670 1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFR 67 (127)
T ss_pred CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEE
Confidence 457899999998899999988764 2589999999999999999999999999999998776666543
No 22
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.4e-16 Score=121.62 Aligned_cols=105 Identities=18% Similarity=0.188 Sum_probs=72.2
Q ss_pred EEEEEEeCCceEEEEEeecC-CCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 111 VGAFVMNGKREVLVVQENSG-RFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~-~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
|+++++.+++++||++|... ..+.+|.|.+|||+++.||++++||+||++||||+++....+.......+ ..
T Consensus 3 v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~-------~~ 75 (122)
T cd04682 3 VALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPS-------AS 75 (122)
T ss_pred eEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEeccc-------CC
Confidence 34444455599999999765 23346999999999999999999999999999999986544433322211 12
Q ss_pred ccEEEEEEEEEeeCCeeeecCCceeeeEEEEec
Q 027305 190 KPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLI 222 (225)
Q Consensus 190 ~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~ 222 (225)
.....++|.+....+.......++..+.-|+++
T Consensus 76 ~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~ 108 (122)
T cd04682 76 PPGTEHVFVVPLTAREDAILFGDEGQALRLMTV 108 (122)
T ss_pred CCceEEEEEEEEecCCCccccCchhheeecccH
Confidence 345678888887765423344455555555554
No 23
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=3.5e-16 Score=120.39 Aligned_cols=111 Identities=23% Similarity=0.319 Sum_probs=73.2
Q ss_pred ceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeee
Q 027305 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFY 186 (225)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 186 (225)
..+++++++++.++++||++|.. .+.|.+|||++++||++.+||+||++||||+++.....++............
T Consensus 6 ~~~~~~~~v~~~~~~vLL~~r~~-----~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSD-----TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPN 80 (132)
T ss_pred cccceEEEEEeCCCCEEEEEecC-----CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCC
Confidence 45688888899889999998864 2689999999999999999999999999999988777765432110000000
Q ss_pred eCC-ccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 187 VES-KPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 187 ~~~-~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
... ......+|.+....+.+ ....++..+.-|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~ 117 (132)
T cd04677 81 GDDEQYIVTLYYVTKVFGGKL-VPDGDETLELKFFSLD 117 (132)
T ss_pred CCcEEEEEEEEEEEeccCCcc-cCCCCceeeEEEEChh
Confidence 011 22334444444444442 2344556666666553
No 24
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.69 E-value=4.4e-16 Score=120.29 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=77.0
Q ss_pred CCCCCcceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEe
Q 027305 101 LPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIF 180 (225)
Q Consensus 101 ~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~ 180 (225)
...++++.++|+++++++ +++||++|...+ ..|.|.+|||++++||++++||.||++||||+++....+++....
T Consensus 6 ~~~~~~~~~~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~-- 80 (130)
T cd04511 6 YIHYQNPKIIVGCVPEWE-GKVLLCRRAIEP--RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSV-- 80 (130)
T ss_pred cccCCCCcEEEEEEEecC-CEEEEEEecCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEec--
Confidence 344455667777777765 899999987654 358999999999999999999999999999999866555554321
Q ss_pred eeeeeeeCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEec
Q 027305 181 LKRIFYVESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLI 222 (225)
Q Consensus 181 ~~~~~~~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~ 222 (225)
...+...++|.++...+.+... .+..+.-++++
T Consensus 81 -------~~~~~~~~~f~~~~~~~~~~~~--~e~~~~~~~~~ 113 (130)
T cd04511 81 -------PHISQVYMFYRARLLDLDFAPG--PESLEVRLFTE 113 (130)
T ss_pred -------CCceEEEEEEEEEEcCCcccCC--cchhceEEECH
Confidence 2335577889998876654432 23344444443
No 25
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=5.2e-16 Score=118.92 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=78.4
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
.|.++++++ ++|||+++.. .+.|.+|||++++||++.+||+||++||||+++.....++.....+.. ....
T Consensus 3 ~v~~vi~~~-~~vLl~~~~~-----~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~---~~~~ 73 (126)
T cd04688 3 RAAAIIIHN-GKLLVQKNPD-----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTY---NGKP 73 (126)
T ss_pred EEEEEEEEC-CEEEEEEeCC-----CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeecc---CCcc
Confidence 455566664 5999998764 378999999999999999999999999999999888888776543321 1123
Q ss_pred ccEEEEEEEEEeeCCeeee------cCCceeeeEEEEecc
Q 027305 190 KPLLFIIFQFEVYTSLPVC------HCGQAMMQRFEVLIA 223 (225)
Q Consensus 190 ~~~~~~~f~~~~~~g~~~~------~e~~e~~~~f~v~~~ 223 (225)
.+...++|.++...+.... .+..+..++.|+++.
T Consensus 74 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~ 113 (126)
T cd04688 74 GHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPID 113 (126)
T ss_pred cEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHH
Confidence 4567789999987665432 245677777777764
No 26
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.69 E-value=2.7e-16 Score=122.12 Aligned_cols=108 Identities=21% Similarity=0.187 Sum_probs=77.7
Q ss_pred eeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeee
Q 027305 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYV 187 (225)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 187 (225)
..+|+++++++++++||+++.+.+. .++.|.+|||++++||++.+||+||++||||+.+.....++..... .
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~---~---- 73 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPPV-GGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPS---P---- 73 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecCC-CCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecC---C----
Confidence 3578889999999999998776554 3579999999999999999999999999999998755555443211 0
Q ss_pred CCccEEEEEEEEEeeCCee-eecCCceeeeEEEEecc
Q 027305 188 ESKPLLFIIFQFEVYTSLP-VCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 188 ~~~~~~~~~f~~~~~~g~~-~~~e~~e~~~~f~v~~~ 223 (225)
........+|.+....+.. ...+..|..+..|+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~ 110 (137)
T cd03424 74 GFSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLD 110 (137)
T ss_pred cccCccEEEEEEEcccccccCCCCCCCeeEEEEecHH
Confidence 1122345667777655442 23445667777777664
No 27
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.69 E-value=4.1e-16 Score=119.32 Aligned_cols=112 Identities=24% Similarity=0.318 Sum_probs=82.6
Q ss_pred eeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeee
Q 027305 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYV 187 (225)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 187 (225)
+.+|++++++.++++||++|.+.+...++.|.+|||.+++||++.+||+||++||||+++.....++.........
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~---- 77 (134)
T PF00293_consen 2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSG---- 77 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT----
T ss_pred CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCC----
Confidence 5688999999989999999998754446999999999999999999999999999999986666666554432211
Q ss_pred CCccEEEEEEEEEeeCCe-eeecCCceeeeEEEEecc
Q 027305 188 ESKPLLFIIFQFEVYTSL-PVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 188 ~~~~~~~~~f~~~~~~g~-~~~~e~~e~~~~f~v~~~ 223 (225)
........+|.+....+. .......+..++-|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~ 114 (134)
T PF00293_consen 78 DPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPD 114 (134)
T ss_dssp ESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHH
T ss_pred CcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHH
Confidence 112356666666665555 223333478888887764
No 28
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.69 E-value=1.2e-16 Score=126.00 Aligned_cols=110 Identities=25% Similarity=0.257 Sum_probs=72.3
Q ss_pred ceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcc--cceeEEEEEEEE----e
Q 027305 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT--EFVEVLAFRYVI----F 180 (225)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~--~~~~~l~~~~~~----~ 180 (225)
++.+|++++++.++++||++|... ++.|++|||++|+|||+.+||+||++||||+++ ....++...... +
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~~----~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRADD----PDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIF 81 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecCC----CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccc
Confidence 457889899998899999988643 478999999999999999999999999999988 333333211100 0
Q ss_pred eeeee--eeCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEec
Q 027305 181 LKRIF--YVESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLI 222 (225)
Q Consensus 181 ~~~~~--~~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~ 222 (225)
....+ .....+...++|.++...+..... .|..+.-|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~--~E~~~~~W~~~ 123 (148)
T PRK09438 82 PHWRHRYAPGVTRNTEHWFCLALPHERPVVL--TEHLAYQWLDA 123 (148)
T ss_pred hhhhhccccccCCceeEEEEEecCCCCcccc--CcccceeeCCH
Confidence 00000 111234566888887654422222 25556655554
No 29
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.69 E-value=4.2e-16 Score=120.55 Aligned_cols=105 Identities=25% Similarity=0.313 Sum_probs=74.2
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
++++++ ..++++||++|.+. +++.|.+|||++++||++.+||.||++||||+++....+++........ ..
T Consensus 2 ~v~~ii-~~~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~-----~~ 72 (134)
T cd03675 2 TVAAVV-ERDGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPD-----SD 72 (134)
T ss_pred eEEEEE-EECCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCC-----CC
Confidence 455554 45689999998765 3589999999999999999999999999999999877777654432211 12
Q ss_pred ccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 190 KPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 190 ~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
......+|.+....+.+.....++..+..|+.+.
T Consensus 73 ~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~ 106 (134)
T cd03675 73 TTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLE 106 (134)
T ss_pred eeEEEEEEEEEECCCCCCCCCCCCceeeEEEeHH
Confidence 3345567777776554433334566777777654
No 30
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.69 E-value=7.2e-16 Score=117.66 Aligned_cols=90 Identities=19% Similarity=0.354 Sum_probs=69.1
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
.+++++.+.++++||+||...+.+ .|.|+||||.+++||++.+||.||++||||+++.....++...+. +++
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~~~~-~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~-------~~~ 77 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAADAHM-AGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYE-------FPD 77 (129)
T ss_pred EEEEEEECCCCEEEEEEecCCCCC-CCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEee-------CCC
Confidence 444566777789999999877665 499999999999999999999999999999987655555544332 235
Q ss_pred ccEEEEEEEEEeeCCeee
Q 027305 190 KPLLFIIFQFEVYTSLPV 207 (225)
Q Consensus 190 ~~~~~~~f~~~~~~g~~~ 207 (225)
......+|.+....+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~ 95 (129)
T PRK10776 78 RHITLWFWLVESWEGEPW 95 (129)
T ss_pred cEEEEEEEEEEEECCccC
Confidence 566677888877655543
No 31
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.69 E-value=3.7e-16 Score=123.36 Aligned_cols=114 Identities=27% Similarity=0.245 Sum_probs=78.7
Q ss_pred ceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEE--eeeee
Q 027305 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVI--FLKRI 184 (225)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~--~~~~~ 184 (225)
++.+|++++++.++++||++|.+.+ +.|.+|||++++||++.+||+||++||||+++....+++..... +....
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~ 77 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPP 77 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC----CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChh
Confidence 3468899999988999999998643 79999999999999999999999999999998887777754211 11000
Q ss_pred --e--eeC--CccEEEEEEEEEeeC--Ceeeec--CCceeeeEEEEeccc
Q 027305 185 --F--YVE--SKPLLFIIFQFEVYT--SLPVCH--CGQAMMQRFEVLIAF 224 (225)
Q Consensus 185 --~--~~~--~~~~~~~~f~~~~~~--g~~~~~--e~~e~~~~f~v~~~~ 224 (225)
. ... ......++|.+.... +.+... ++.|..++-|+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e 127 (147)
T cd03671 78 ELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEE 127 (147)
T ss_pred hhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHH
Confidence 0 000 112334555555543 333332 356788888887653
No 32
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=3.1e-16 Score=119.83 Aligned_cols=108 Identities=20% Similarity=0.283 Sum_probs=75.2
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeC
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (225)
++++++|.++++++||+||...+.+.+|.|++|||.+++||++.+||+||++||||+++....+++....+.. ..
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~-----~~ 76 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHED-----SG 76 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcC-----CC
Confidence 4677777887799999999876654469999999999999999999999999999999876665432222211 01
Q ss_pred CccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 189 SKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 189 ~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
..+...++|.+....+. .....+..++.|+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~--~~~~~e~~~~~w~~~~ 109 (129)
T cd04699 77 VYNVIYLVFVCEALSGA--VKLSDEHEEYAWVTLE 109 (129)
T ss_pred EEEEEEEEEEeeecCCc--ccCChhheEEEEecHH
Confidence 13456667777655442 2233455566666654
No 33
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.69 E-value=7.1e-16 Score=119.31 Aligned_cols=90 Identities=22% Similarity=0.343 Sum_probs=68.4
Q ss_pred EEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCc
Q 027305 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESK 190 (225)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (225)
+.+++++.++++||+||...+.+ .|.|.||||.+++||++.+||+||++||||+++....+++...+. .++.
T Consensus 6 ~~~~ii~~~~~vLL~~R~~~~~~-~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~-------~~~~ 77 (135)
T PRK10546 6 VVAAIIERDGKILLAQRPAHSDQ-AGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQRE-------VSGR 77 (135)
T ss_pred EEEEEEecCCEEEEEEccCCCCC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEe-------cCCc
Confidence 33445566789999999776555 499999999999999999999999999999998776666544332 2355
Q ss_pred cEEEEEEEEEeeCCeeee
Q 027305 191 PLLFIIFQFEVYTSLPVC 208 (225)
Q Consensus 191 ~~~~~~f~~~~~~g~~~~ 208 (225)
....++|.+....|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~ 95 (135)
T PRK10546 78 RIHLHAWHVPDFHGELQA 95 (135)
T ss_pred EEEEEEEEEEEecCcccc
Confidence 566777888777666544
No 34
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.68 E-value=6.3e-16 Score=118.29 Aligned_cols=106 Identities=18% Similarity=0.091 Sum_probs=75.2
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeC
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (225)
+.|++++++ ++++||++++. .+.|.+|||++++||++.+||+||++||||+++....+++.....+.... .
T Consensus 2 ~~~~~vi~~-~~~vLlv~~~~-----~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~---~ 72 (125)
T cd04689 2 LRARAIVRA-GNKVLLARVIG-----QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKG---V 72 (125)
T ss_pred eEEEEEEEe-CCEEEEEEecC-----CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCC---c
Confidence 356666665 68999999863 47899999999999999999999999999999988888876654432111 1
Q ss_pred CccEEEEEEEEEeeCCe--eeecCCceeeeEEEEecc
Q 027305 189 SKPLLFIIFQFEVYTSL--PVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 189 ~~~~~~~~f~~~~~~g~--~~~~e~~e~~~~f~v~~~ 223 (225)
..+...++|.+....+. +....+.+..+.-|+++.
T Consensus 73 ~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~ 109 (125)
T cd04689 73 RTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVS 109 (125)
T ss_pred eEEEEEEEEEEEcccccccCCccCccceEEEEEccHH
Confidence 23455677888766443 222334456666666653
No 35
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=6.4e-16 Score=118.12 Aligned_cols=105 Identities=23% Similarity=0.269 Sum_probs=74.8
Q ss_pred eeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeee
Q 027305 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYV 187 (225)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 187 (225)
+++|+++|+++ +++||++++. .+.|.+|||++++||++.+||+||++||||+.+....+++......... ..
T Consensus 2 ~~~v~~~i~~~-~~vLL~~~~~-----~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~--~~ 73 (123)
T cd04672 2 KVDVRAAIFKD-GKILLVREKS-----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHP--PP 73 (123)
T ss_pred cceEEEEEEEC-CEEEEEEEcC-----CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccC--CC
Confidence 46788888886 8999998874 4889999999999999999999999999999986666666543321110 00
Q ss_pred CCccEEEEEEEEEeeCCeeeecCCceeeeEEEEec
Q 027305 188 ESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLI 222 (225)
Q Consensus 188 ~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~ 222 (225)
...+....+|.+....+.+... .+..+..|+++
T Consensus 74 ~~~~~~~~~f~~~~~~~~~~~~--~E~~~~~W~~~ 106 (123)
T cd04672 74 QPYQVYKLFFLCEILGGEFKPN--IETSEVGFFAL 106 (123)
T ss_pred CceEEEEEEEEEEecCCcccCC--CceeeeEEECH
Confidence 2234566788888876655444 44555555544
No 36
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.68 E-value=5.4e-16 Score=120.26 Aligned_cols=89 Identities=26% Similarity=0.423 Sum_probs=69.1
Q ss_pred EEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCc
Q 027305 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESK 190 (225)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (225)
+.+++.++ +++||++|...+ ..+.|.+|||++++||++.+||+||++||||+++....+++........ ...
T Consensus 4 ~~~~i~~~-~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~-----~~~ 75 (137)
T cd03427 4 TLCFIKDP-DKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPG-----EEE 75 (137)
T ss_pred EEEEEEEC-CEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCC-----CCc
Confidence 34455554 899999998755 3589999999999999999999999999999999888887766543221 134
Q ss_pred cEEEEEEEEEeeCCeee
Q 027305 191 PLLFIIFQFEVYTSLPV 207 (225)
Q Consensus 191 ~~~~~~f~~~~~~g~~~ 207 (225)
+...++|.+....+.+.
T Consensus 76 ~~~~~~f~~~~~~~~~~ 92 (137)
T cd03427 76 RYGVFVFLATEFEGEPL 92 (137)
T ss_pred EEEEEEEEECCcccccC
Confidence 56778888887777665
No 37
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=1.5e-15 Score=115.59 Aligned_cols=109 Identities=25% Similarity=0.320 Sum_probs=73.4
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeC
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (225)
.++.++++++++++||++|.. .+.|.+|||++++||++.+||.||++||||+++....+++..........+...
T Consensus 3 ~~v~~ii~~~~~~vLl~~r~~-----~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 77 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSD-----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNG 77 (129)
T ss_pred ceEEEEEECCCCeEEEEEecC-----CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCC
Confidence 467888888889999999874 378999999999999999999999999999998776665433211110001111
Q ss_pred C-ccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 189 S-KPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 189 ~-~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
. .+....+|.+....+.+.. ...+..+.-|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~w~~~~ 112 (129)
T cd04676 78 DVRQYLDITFRCRVVGGELRV-GDDESLDVAWFDPD 112 (129)
T ss_pred CcEEEEEEEEEEEeeCCeecC-CCCceeEEEEEChh
Confidence 1 2455666777766665432 33444555555543
No 38
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.66 E-value=1.1e-15 Score=125.35 Aligned_cols=107 Identities=19% Similarity=0.100 Sum_probs=79.5
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
+|+++.+++++++||+++.+.+. +...|+||||.+|+||++++||+||++||||+++.....++..... . ..
T Consensus 49 ~v~v~~~~~~~~vlLvrq~r~~~-~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~---~----~~ 120 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAAGT-ERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLA---P----SY 120 (185)
T ss_pred EEEEEEEeCCCEEEEEEeecCCC-CCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecC---C----Cc
Confidence 46666677788999998876654 4588999999999999999999999999999999888887754321 1 12
Q ss_pred ccEEEEEEEEEeeCCeeeecCCceeeeEEEEeccc
Q 027305 190 KPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 190 ~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
.....++|.+....+.+...+..|..+.+++++..
T Consensus 121 ~~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e 155 (185)
T PRK11762 121 FSSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLAD 155 (185)
T ss_pred cCcEEEEEEEEccccccCCCCCCceeEEEEEcHHH
Confidence 33566677777655544444556667888887653
No 39
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=2.7e-15 Score=114.70 Aligned_cols=91 Identities=22% Similarity=0.315 Sum_probs=71.3
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeC
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (225)
..+++++++.++++|+++|...+.++ |.|+||||.+++||++.+|++||+.||||+++.....++...+.+ +
T Consensus 5 ~~~~~ii~~~~~~vLl~~R~~~~~~~-g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~-------~ 76 (128)
T TIGR00586 5 QIAVGIIRNENGEIIITRRADGHMFA-KLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFY-------P 76 (128)
T ss_pred EEEEEEEECCCCEEEEEEEeCCCCCC-CeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEEC-------C
Confidence 34555667777899999998877664 999999999999999999999999999999987666665544332 3
Q ss_pred CccEEEEEEEEEeeCCeee
Q 027305 189 SKPLLFIIFQFEVYTSLPV 207 (225)
Q Consensus 189 ~~~~~~~~f~~~~~~g~~~ 207 (225)
+.+....+|.+....+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~ 95 (128)
T TIGR00586 77 RHITLWFWLLERWEGGPPG 95 (128)
T ss_pred CcEEEEEEEEEEEcCCCcC
Confidence 5667788888887655543
No 40
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.66 E-value=5e-16 Score=124.09 Aligned_cols=108 Identities=27% Similarity=0.319 Sum_probs=74.0
Q ss_pred EEEEEEEeCC--ceEEEEEeecCCCCCCCcEEEeeEEcCCC-CCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeee
Q 027305 110 GVGAFVMNGK--REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFY 186 (225)
Q Consensus 110 ~v~~~v~~~~--~~vLl~~r~~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 186 (225)
++.+++.+.+ ++|||+||.......+|.|++|||++++| |++.+||+||++||||+++.....++.....+.
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~----- 78 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYT----- 78 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccc-----
Confidence 4444555544 68999999875433369999999999999 999999999999999999987777765432211
Q ss_pred eCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEeccc
Q 027305 187 VESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 187 ~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
.......+|.+....+.....+..|..+..|+++..
T Consensus 79 --~~~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e 114 (157)
T cd03426 79 --RSGFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSF 114 (157)
T ss_pred --cCCCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHH
Confidence 112334555555443322333445777888887653
No 41
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.65 E-value=1.2e-15 Score=119.32 Aligned_cols=62 Identities=24% Similarity=0.293 Sum_probs=49.7
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCccccee
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE 171 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~ 171 (225)
.+.+.+++.++++||+||.......+|.|.+|||++++||++++||+||++||||+++....
T Consensus 5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~ 66 (141)
T PRK15472 5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTE 66 (141)
T ss_pred eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeee
Confidence 34444555578999999876443336999999999999999999999999999999875443
No 42
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=1.6e-15 Score=114.58 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=70.1
Q ss_pred EEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccc--eeEEEEEEEEeeeeeeeeC
Q 027305 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~--~~~l~~~~~~~~~~~~~~~ 188 (225)
+++++++.++++||++|+. .+.|.+|||++++||++++||+||++||||+++.. ...++...... ....
T Consensus 3 ~~~~v~~~~~~vLl~~r~~-----~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~----~~~~ 73 (118)
T cd04690 3 AAALILVRDGRVLLVRKRG-----TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPA----ANEP 73 (118)
T ss_pred EEEEEEecCCeEEEEEECC-----CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEeccc----ccCC
Confidence 4556777788999998863 47899999999999999999999999999999877 66665443211 1112
Q ss_pred CccEEEEEEEEEeeCCeeeecCCceeeeEEEEec
Q 027305 189 SKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLI 222 (225)
Q Consensus 189 ~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~ 222 (225)
..+...++|.+.... .+. ..++..+..|+++
T Consensus 74 ~~~~~~~~f~~~~~~-~~~--~~~e~~~~~W~~~ 104 (118)
T cd04690 74 GVDVRATVYVAELTG-EPV--PAAEIEEIRWVDY 104 (118)
T ss_pred CcEEEEEEEEEcccC-CcC--CCchhhccEEecH
Confidence 245677788887654 332 2345555555544
No 43
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=1.6e-15 Score=117.46 Aligned_cols=108 Identities=23% Similarity=0.247 Sum_probs=70.3
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcc-cceeEEEEEEEEeeeeeeeeC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT-EFVEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~-~~~~~l~~~~~~~~~~~~~~~ 188 (225)
+|+++|+++ ++|||+++++ .+.|.||||.+++||++.+||+||++||||+.+ .....++.....+........
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~ 75 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKR-----YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDAD 75 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcC-----CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCc
Confidence 466777774 8999999864 267999999999999999999999999999987 455666655432211100011
Q ss_pred CccEEEEEEEEEeeCCee-eecCCce---eeeEEEEecc
Q 027305 189 SKPLLFIIFQFEVYTSLP-VCHCGQA---MMQRFEVLIA 223 (225)
Q Consensus 189 ~~~~~~~~f~~~~~~g~~-~~~e~~e---~~~~f~v~~~ 223 (225)
..+...++|.++...+.. ...+..+ ..+..|+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ 114 (131)
T cd04686 76 IFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIH 114 (131)
T ss_pred eeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHH
Confidence 234556788888754431 1222222 2345666654
No 44
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=1.5e-15 Score=116.74 Aligned_cols=105 Identities=21% Similarity=0.205 Sum_probs=74.7
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEE-eeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (225)
++.+++++.++++||++|.....+.+|.|++ |||++++||++.+||+||++||||+++.....++..... ..
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~-------~~ 74 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYD-------TD 74 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEec-------CC
Confidence 5677889999999999887665545789999 699999999999999999999999998755554433211 11
Q ss_pred CccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 189 SKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 189 ~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
......++|.+.. .+.+. ...+|..+..|+++.
T Consensus 75 ~~~~~~~~f~~~~-~~~~~-~~~~E~~~~~w~~~~ 107 (126)
T cd04697 75 GNRVWGKVFSCVY-DGPLK-LQEEEVEEITWLSIN 107 (126)
T ss_pred CceEEEEEEEEEE-CCCCC-CCHhHhhheEEcCHH
Confidence 2234456677665 34333 334566777777654
No 45
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.63 E-value=1.8e-15 Score=116.32 Aligned_cols=108 Identities=23% Similarity=0.214 Sum_probs=75.6
Q ss_pred EEEEEEEeC--CceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEE-Eeeeeeee
Q 027305 110 GVGAFVMNG--KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYV-IFLKRIFY 186 (225)
Q Consensus 110 ~v~~~v~~~--~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~-~~~~~~~~ 186 (225)
.+.+++++. ++++||++|... .++.|.+|||++++||++.+||+||++||||+.+.....+..... .+.. +.
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~--~~ 77 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVE--FT 77 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccc--cC
Confidence 566677877 899999999865 258999999999999999999999999999999876666654431 0100 11
Q ss_pred eCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 187 VESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 187 ~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
....+...++|.+....+.+ ....+|..+.-|+++.
T Consensus 78 ~~~~~~~~~~f~~~~~~~~~-~~~~~E~~~~~W~~~~ 113 (129)
T cd04664 78 DNGRVWTEHPFAFHLPSDAV-VTLDWEHDAFEWVPPE 113 (129)
T ss_pred CCceEEEEeEEEEEcCCCCc-ccCCccccccEecCHH
Confidence 11244567888888765542 2233456666666653
No 46
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.63 E-value=9.2e-16 Score=118.92 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=74.3
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
+|.+.+.+.++++||++|...+ .+.|.+|||++++||++++||.||++||||+++.....++.... ..
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~---~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~---------~~ 69 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFP---PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPW---------PF 69 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCC---CCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCC---------CC
Confidence 3555667777899999987543 58999999999999999999999999999999876666554211 11
Q ss_pred ccEEEEEEEEEeeCCeeeecCCceeeeEEEEeccc
Q 027305 190 KPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 190 ~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
.+....+|.+....+. ...+.++..++.++++..
T Consensus 70 ~~~~~~~f~~~~~~~~-~~~~~~E~~~~~w~~~~e 103 (131)
T cd03429 70 PSSLMLGFTAEADSGE-IVVDDDELEDARWFSRDE 103 (131)
T ss_pred CceEEEEEEEEEcCCc-ccCCchhhhccEeecHHH
Confidence 1345667888766543 334556777777877653
No 47
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.63 E-value=4.7e-15 Score=132.44 Aligned_cols=114 Identities=24% Similarity=0.276 Sum_probs=79.5
Q ss_pred ceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEE--Eeeeee
Q 027305 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYV--IFLKRI 184 (225)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~--~~~~~~ 184 (225)
..++++++++. +++|||++|...+ +.|.|.+|||++++||++++||+||++||||+++....+.+.... .+....
T Consensus 202 ~~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~ 278 (340)
T PRK05379 202 TFVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPG 278 (340)
T ss_pred cceEEEEEEEE-CCEEEEEEecCCC--CCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCC
Confidence 44677777765 5799999998654 368999999999999999999999999999998866655443321 221111
Q ss_pred eeeCCccEEEEEEEEEeeCCe-eeecCCceeeeEEEEeccc
Q 027305 185 FYVESKPLLFIIFQFEVYTSL-PVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 185 ~~~~~~~~~~~~f~~~~~~g~-~~~~e~~e~~~~f~v~~~~ 224 (225)
.....+...++|.+....+. +....+++..+..|+++..
T Consensus 279 -r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~e 318 (340)
T PRK05379 279 -RSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAE 318 (340)
T ss_pred -CCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHH
Confidence 01123456778888776554 3334556777888887643
No 48
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.63 E-value=2.6e-15 Score=120.84 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=77.1
Q ss_pred eeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEe-eEEcCCCCCHHHHHHHHHHHHhCCcccceeEE-EEEEEEeeeeee
Q 027305 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEVL-AFRYVIFLKRIF 185 (225)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l-~~~~~~~~~~~~ 185 (225)
..+++++++++++++||++|.......+|.|.+| ||++++||++++||+||++||||+.+....++ .... +.....
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~--~~~~~~ 107 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFR--YRAPDD 107 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEE--EEEEcC
Confidence 5567778899989999999876554447999996 89999999999999999999999998776665 2222 111100
Q ss_pred eeCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 186 YVESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 186 ~~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
.....+...++|.+....+ ... ..+|..+..++++.
T Consensus 108 ~~~~~~~i~~~f~~~~~~~-~~~-~~~Ev~~~~w~~~~ 143 (165)
T cd02885 108 GGLVEHEIDHVFFARADVT-LIP-NPDEVSEYRWVSLE 143 (165)
T ss_pred CCceeeEEEEEEEEEeCCC-CCC-CccceeEEEEECHH
Confidence 0011233456777775433 222 45667777777764
No 49
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.63 E-value=2.3e-15 Score=118.98 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=66.5
Q ss_pred EEEEEEEeCC-ceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeC
Q 027305 110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 110 ~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (225)
.+++++++.+ ++|||+|+.. .+.|+||||++++||++.+||+||++||||+.+..... .. .+... ...
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~--~~--~~~~~--~~~ 71 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID--KD--DYIEL--IIR 71 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc--cc--eeeec--ccC
Confidence 5777888865 6999999864 25899999999999999999999999999998764211 11 11110 111
Q ss_pred CccEEEEEEEEEeeCCeee--ecCCceeeeEEEEecc
Q 027305 189 SKPLLFIIFQFEVYTSLPV--CHCGQAMMQRFEVLIA 223 (225)
Q Consensus 189 ~~~~~~~~f~~~~~~g~~~--~~e~~e~~~~f~v~~~ 223 (225)
....++|.+....+... +...+|..+.-|+++.
T Consensus 72 --~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~ 106 (145)
T cd03672 72 --GQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIK 106 (145)
T ss_pred --CcEEEEEEEecCCCCcccCcCChhhhheEEEeeHH
Confidence 12345565554433222 2334577777777764
No 50
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=4.4e-15 Score=116.69 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=74.7
Q ss_pred eEEEEEEEeCC---ceEEEEEeecCCCCCCCcEEE-eeEEcCCCCCHHHHHHHHHHHHhCCcccc--eeEEEEEEEEeee
Q 027305 109 VGVGAFVMNGK---REVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRYVIFLK 182 (225)
Q Consensus 109 ~~v~~~v~~~~---~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~~--~~~l~~~~~~~~~ 182 (225)
.++.+++++.+ +++|+++|.......+|.|++ |||++++||++++||+||++||||+.+.. ...++.....+..
T Consensus 3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~ 82 (144)
T cd04692 3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDH 82 (144)
T ss_pred eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccc
Confidence 35667888876 899999987654344689999 59999999999999999999999998753 3334443322210
Q ss_pred eeeeeCCccEEEEEEEEEeeC--CeeeecCCceeeeEEEEeccc
Q 027305 183 RIFYVESKPLLFIIFQFEVYT--SLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 183 ~~~~~~~~~~~~~~f~~~~~~--g~~~~~e~~e~~~~f~v~~~~ 224 (225)
. .........++|.+.... +.+. ....|..+..++++..
T Consensus 83 ~--~~~~~~~~~~~f~~~~~~~~~~~~-~~~~E~~~~~W~~~~e 123 (144)
T cd04692 83 I--GKLIDREFHHVYLYELKVPLEEFT-LQKEEVAGVVLIPLDE 123 (144)
T ss_pred c--CCCccceEEEEEEEeccCChhhcC-CChhHhheEEEECHHH
Confidence 0 000112345677777654 3322 3345777787877643
No 51
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.61 E-value=6.6e-15 Score=126.60 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=82.1
Q ss_pred CCCCCCCCCcceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEE
Q 027305 97 GANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR 176 (225)
Q Consensus 97 ~~~~~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~ 176 (225)
..|....++.+..+|.++|. .++++||+++.+.+ .|.|.+|||++++|||+++||+||++||||+++.....++..
T Consensus 121 ~~c~~~~yp~~~paViv~V~-~~~~iLL~rr~~~~---~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~ 196 (256)
T PRK00241 121 PHCRERYYPRIAPCIIVAVR-RGDEILLARHPRHR---NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQ 196 (256)
T ss_pred CCCCCEECCCCCCEEEEEEE-eCCEEEEEEccCCC---CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeE
Confidence 44566666666666665544 45899999987654 589999999999999999999999999999998877777654
Q ss_pred EEEeeeeeeeeCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 177 YVIFLKRIFYVESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
.+. ..+..++.|.++...+.+.. ++.|..+..|+.+.
T Consensus 197 ~~~---------~p~~lm~~f~a~~~~~~~~~-~~~Ei~~a~W~~~d 233 (256)
T PRK00241 197 PWP---------FPHSLMLGFHADYDSGEIVF-DPKEIADAQWFRYD 233 (256)
T ss_pred eec---------CCCeEEEEEEEEecCCcccC-CcccEEEEEEECHH
Confidence 322 12356778888887666444 34566666666543
No 52
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=4e-15 Score=114.19 Aligned_cols=62 Identities=34% Similarity=0.541 Sum_probs=51.9
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEe-eEEcCCCCCHHHHHHHHHHHHhCCcccceeE
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEV 172 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 172 (225)
.|.+++++.+++|||+||.......+|.|++| ||++++||++ +||+||++||||+++....+
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~ 64 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSEL 64 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhc
Confidence 46677888889999999876543346899998 8999999999 99999999999999865443
No 53
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.61 E-value=4.1e-15 Score=114.21 Aligned_cols=104 Identities=26% Similarity=0.273 Sum_probs=70.9
Q ss_pred eEEEEEEEeCCc---eEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeee
Q 027305 109 VGVGAFVMNGKR---EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIF 185 (225)
Q Consensus 109 ~~v~~~v~~~~~---~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~ 185 (225)
.++++++++.++ ++||+||+. +.|.+|||++++||++.+||+||++||||+++.....++.....+. +
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~---~ 73 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLN---Y 73 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC------CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEE---c
Confidence 356777776544 699998873 6899999999999999999999999999999887766532211111 1
Q ss_pred eeCCccEEEEEEEEEeeCC-eeeecCCceeeeEEEEecc
Q 027305 186 YVESKPLLFIIFQFEVYTS-LPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 186 ~~~~~~~~~~~f~~~~~~g-~~~~~e~~e~~~~f~v~~~ 223 (225)
.....+....+|.+....+ .+... .+..+..|+++.
T Consensus 74 ~~~~~~~~~~~f~~~~~~~~~~~~~--~E~~~~~W~~~~ 110 (130)
T cd03428 74 QVRGKLKTVTYFLAELRPDVEVKLS--EEHQDYRWLPYE 110 (130)
T ss_pred cccCcceEEEEEEEEeCCCCccccc--cceeeEEeecHH
Confidence 1123455667788876533 23333 556666666553
No 54
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.60 E-value=1.2e-14 Score=111.57 Aligned_cols=104 Identities=22% Similarity=0.151 Sum_probs=70.5
Q ss_pred EEEEEEeCC---ceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccce-eEEEEEEEEeeeeeee
Q 027305 111 VGAFVMNGK---REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV-EVLAFRYVIFLKRIFY 186 (225)
Q Consensus 111 v~~~v~~~~---~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~l~~~~~~~~~~~~~ 186 (225)
+++++++.+ +++||+++.. .+.|.+|||++++||++.+||+||++||||+++... ..++.........
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~-----~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~--- 74 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRR-----TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSK--- 74 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecC-----CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCC---
Confidence 555666543 6899998864 278999999999999999999999999999998776 7777654432210
Q ss_pred eCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 187 VESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 187 ~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
....+....+|.+..... ....+..+..+..|+++.
T Consensus 75 ~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~ 110 (122)
T cd04666 75 NRPPRCEVAVFPLEVTEE-LDEWPEMHQRKRKWFSPE 110 (122)
T ss_pred CCCceEEEEEEEEEEecc-ccCCcccCceEEEEecHH
Confidence 012355567777665433 232233445566666654
No 55
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.60 E-value=1.6e-14 Score=108.86 Aligned_cols=101 Identities=29% Similarity=0.429 Sum_probs=73.6
Q ss_pred EEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCc
Q 027305 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESK 190 (225)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (225)
+.+++.++++++||++|...+.+ +|.|.+|||.++++|++.+||.||+.||||+++.....++...+.+ ++.
T Consensus 4 ~~~~i~~~~~~~Ll~~r~~~~~~-~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~-------~~~ 75 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAGKHL-GGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDY-------PDK 75 (124)
T ss_pred EEEEEECCCCEEEEEEeCCCCCC-CCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeC-------CCC
Confidence 44456677799999999876644 5999999999999999999999999999999987666665544332 355
Q ss_pred cEEEEEEEEEeeCCeeeecCCceeeeEEEEec
Q 027305 191 PLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLI 222 (225)
Q Consensus 191 ~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~ 222 (225)
.....+|.+....+... ..+..+..|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~---~~e~~~~~W~~~ 104 (124)
T cd03425 76 RVTLHVFLVELWSGEPQ---LLEHQELRWVPP 104 (124)
T ss_pred eEEEEEEEEeeeCCCcc---cccCceEEEeeH
Confidence 66778888876655433 223444555554
No 56
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.60 E-value=1.6e-14 Score=119.09 Aligned_cols=109 Identities=21% Similarity=0.188 Sum_probs=75.4
Q ss_pred EEEEEEE--eCCceEEEEEeecCCCCCCCcEEEeeEEcCCC-CCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeee
Q 027305 110 GVGAFVM--NGKREVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFY 186 (225)
Q Consensus 110 ~v~~~v~--~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 186 (225)
+++++++ +.++.+|++||........|.|+||||.+|+| |++++||+||++||||+++.....++.....+.
T Consensus 32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~----- 106 (190)
T PRK10707 32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDS----- 106 (190)
T ss_pred eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeec-----
Confidence 4554545 34568999998765543468999999999985 679999999999999999998888887653221
Q ss_pred eCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEecccC
Q 027305 187 VESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAFF 225 (225)
Q Consensus 187 ~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~~ 225 (225)
........+.+....+.+...+.+|..+.|++++.++
T Consensus 107 --~~~~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~ 143 (190)
T PRK10707 107 --STGYQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEA 143 (190)
T ss_pred --cCCcEEEEEEEEECCCCCCCCChhhhheEEEEeHHHH
Confidence 1122333343333333334446678888999998653
No 57
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.5e-14 Score=114.10 Aligned_cols=70 Identities=27% Similarity=0.449 Sum_probs=57.3
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccce----eEEEEEEE
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV----EVLAFRYV 178 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~----~~l~~~~~ 178 (225)
+++++++++.++++||++|.......+|.|.+|||++++||++.+||+||++||||+.+... ++++...+
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~ 75 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWES 75 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecc
Confidence 46777788999999999998654323699999999999999999999999999999988653 45555443
No 58
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.59 E-value=1.3e-14 Score=115.95 Aligned_cols=67 Identities=33% Similarity=0.445 Sum_probs=59.1
Q ss_pred cceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEE
Q 027305 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR 176 (225)
Q Consensus 106 ~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~ 176 (225)
..+.++++++++.++++||++|... ++.|.+|||++++||++.+||.||++||||+.+....+++..
T Consensus 6 ~~~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~ 72 (156)
T PRK00714 6 GYRPNVGIILLNRQGQVFWGRRIGQ----GHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAET 72 (156)
T ss_pred CCCCeEEEEEEecCCEEEEEEEcCC----CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEc
Confidence 3567899999999999999998742 378999999999999999999999999999998877777764
No 59
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.8e-14 Score=108.31 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=64.7
Q ss_pred EEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCccEE
Q 027305 114 FVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESKPLL 193 (225)
Q Consensus 114 ~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (225)
++...++++||++|. .+.|.+|||++++||++.+||.||++||||+.+.....++... .....
T Consensus 5 ~i~~~~~~vLlv~r~------~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~-----------~~~~~ 67 (112)
T cd04667 5 VICRRGGRVLLVRKS------GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVD-----------GGSTR 67 (112)
T ss_pred EEEecCCEEEEEEcC------CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEe-----------CCCEE
Confidence 344456899999986 2789999999999999999999999999999876655544321 11234
Q ss_pred EEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 194 FIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 194 ~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
.++|.+....+. ....+.+..+..|+++.
T Consensus 68 ~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~ 96 (112)
T cd04667 68 HHVFVASVPPSA-QPKPSNEIADCRWLSLD 96 (112)
T ss_pred EEEEEEEcCCcC-CCCCchheeEEEEecHH
Confidence 466777665442 22334566666666654
No 60
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=9.7e-15 Score=112.91 Aligned_cols=99 Identities=22% Similarity=0.216 Sum_probs=65.9
Q ss_pred eCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCccEEEEE
Q 027305 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESKPLLFII 196 (225)
Q Consensus 117 ~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
+.++++||++|... .+|.|.+|||++++|||+.+||+||++||||+++............+... ........+
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 83 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEAN----DNRILMAPV 83 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecC----CceEEEEEE
Confidence 46789999999865 25899999999999999999999999999999886543322222222210 122334556
Q ss_pred EEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 197 FQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 197 f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
|.+....+.....+ .+..+..|+++.
T Consensus 84 f~~~~~~~~~~~~~-~E~~~~~W~~~~ 109 (131)
T cd04695 84 FVGFVPPHQEVVLN-HEHTEYRWCSFA 109 (131)
T ss_pred EEEEecCCCccccC-chhcccEecCHH
Confidence 76666544333222 466666666653
No 61
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.59 E-value=1.3e-14 Score=118.52 Aligned_cols=107 Identities=19% Similarity=0.111 Sum_probs=73.2
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcE-EEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeee
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIW-KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYV 187 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w-~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 187 (225)
.++.++|++.++++||++|.....+.+|.| .+|||++++||++.+||+|||+||||+.+.....++... + ..
T Consensus 38 ~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~--~-----~~ 110 (180)
T PRK15393 38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFY--F-----ED 110 (180)
T ss_pred EEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEE--e-----cC
Confidence 466777888889999998875544334666 579999999999999999999999999876554443321 1 11
Q ss_pred CCccEEEEEEEEEeeCCeeeecCCceeeeEEEEeccc
Q 027305 188 ESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 188 ~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
.......++|.+.. .+. ...+..|..+..|+++.+
T Consensus 111 ~~~~~~~~~f~~~~-~~~-~~~~~~E~~~~~W~~~~e 145 (180)
T PRK15393 111 ENCRVWGALFSCVS-HGP-FALQEEEVSEVCWMTPEE 145 (180)
T ss_pred CCceEEEEEEEEEe-CCC-CCCChHHeeEEEECCHHH
Confidence 22334455666654 343 333456788888877643
No 62
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.57 E-value=1.7e-14 Score=111.94 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=65.5
Q ss_pred CceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEE---EEee--eeeeeeCCccEE
Q 027305 119 KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRY---VIFL--KRIFYVESKPLL 193 (225)
Q Consensus 119 ~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~---~~~~--~~~~~~~~~~~~ 193 (225)
++++||+|+..+. .|.|.||||.+++|||+.+||+||++||||+.+.. .+++... ..+. ............
T Consensus 12 ~~~~Llvk~~~~~---~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (132)
T cd04661 12 DTLVLLVQQKVGS---QNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAK 87 (132)
T ss_pred CcEEEEEEeecCC---CCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccE
Confidence 5689999987532 48999999999999999999999999999998754 3333211 1110 000000112356
Q ss_pred EEEEEEEeeCCeeeecCCceeeeEEEEec
Q 027305 194 FIIFQFEVYTSLPVCHCGQAMMQRFEVLI 222 (225)
Q Consensus 194 ~~~f~~~~~~g~~~~~e~~e~~~~f~v~~ 222 (225)
..+|.+...+|.+... .+..++-|+.+
T Consensus 88 ~~~f~~~~~~g~~~~~--~e~~~~~W~~~ 114 (132)
T cd04661 88 VFFFKARYMSGQFELS--QNQVDFKWLAK 114 (132)
T ss_pred EEEEEEEEecCccccC--CCcceeEecCH
Confidence 7899999988876533 44556655554
No 63
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=3.4e-14 Score=110.70 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=67.2
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcc-cceeEEEEEEEEeeeeeeeeC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT-EFVEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~-~~~~~l~~~~~~~~~~~~~~~ 188 (225)
++.+++++.+++|||+++........+.|.+|||++++||++.+||.||++||||+.+ ....++......+... ..
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~---~~ 78 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFL---GV 78 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEec---Cc
Confidence 5778899999999999887543123589999999999999999999999999999998 5555555444323211 11
Q ss_pred CccEEEEEEEEEeeCCe
Q 027305 189 SKPLLFIIFQFEVYTSL 205 (225)
Q Consensus 189 ~~~~~~~~f~~~~~~g~ 205 (225)
..+...++|.++...+.
T Consensus 79 ~~~~~~~~f~~~~~~~~ 95 (133)
T cd04685 79 DGRQEERFFLARTPRTE 95 (133)
T ss_pred cceeeEEEEEEEcCCcc
Confidence 22344567887765443
No 64
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.56 E-value=6.6e-14 Score=104.56 Aligned_cols=106 Identities=26% Similarity=0.411 Sum_probs=74.9
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
++++++.+.++++||++|... + .|.|.+|||.+++||++.++|+||+.||+|+.+......+...... ...+
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~--~-~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~-----~~~~ 73 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS--P-GGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVES-----PDEG 73 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC--C-CCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeec-----cCCC
Confidence 566777888789999999865 2 5899999999999999999999999999999876444444432221 1135
Q ss_pred ccEEEEEEEEEeeCCeeeecCCceeeeEEEEecc
Q 027305 190 KPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 190 ~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
......+|.+....+........+..+..++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~ 107 (123)
T cd02883 74 EHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLD 107 (123)
T ss_pred ceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHH
Confidence 6677888888876655432233444455555543
No 65
>PLN03143 nudix hydrolase; Provisional
Probab=99.55 E-value=2.2e-13 Score=118.64 Aligned_cols=166 Identities=20% Similarity=0.275 Sum_probs=98.9
Q ss_pred ccccCCcccccceeccccCCCcEEEecCCCCChHHHHHHHHHHH-HHHHHcCcceEEEEcccccccchHHHHhcCceeec
Q 027305 4 SVNSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSI-SHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHH 82 (225)
Q Consensus 4 ~~~~~~~~~~~~~~~~~d~~~gv~i~~~~~~~~~~f~~~l~~~~-~~w~~~~~~~iw~~~~~~~~~~~~~~~~~gf~~h~ 82 (225)
+++++++.....|.-....-..|.|......+.++|...+...+ +.|-+.-....=+. ......+-.+.+ ++..+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~-~~vd~fg 99 (291)
T PLN03143 22 SSSSSSSPLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQWLKNLQSESGIL-AYGSMSLKQVLI-QGVDMFG 99 (291)
T ss_pred ccCCCCCCceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHHHHHHhhhccccc-cCCCceeEEEEE-EEEeccc
Confidence 44555668888888777777889999977788899987776664 78865543311000 000111111111 1222223
Q ss_pred cCCceEEEEEee---CCCCCCCCCCCcc-eeEEEEEEE-eCCce--EEEEEeecCCCCCCCcEEEeeEEcCCC-CCHHHH
Q 027305 83 AEPNYLMLVYWI---PGGANTLPANASH-RVGVGAFVM-NGKRE--VLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVA 154 (225)
Q Consensus 83 ~~~~~~~l~~~l---~~~~~~~p~~~~~-~~~v~~~v~-~~~~~--vLl~~r~~~~~~~~~~w~lPgG~ve~g-E~~~~a 154 (225)
..-.|+.+..-. +++. ..+..... ..+|++++. +.+++ ++|+++.+.+. +...|+||||.+|++ |++.+|
T Consensus 100 ~~~gflkv~~d~~~l~~G~-~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~PAG~lD~~~edp~~a 177 (291)
T PLN03143 100 KRIGFLKFKADIIDKETGQ-KVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPV-GKFVLELPAGMLDDDKGDFVGT 177 (291)
T ss_pred CceeEEEEEEEEEECCCCC-EeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEecccccCCCCCCHHHH
Confidence 344555554322 2222 23322222 224554444 44444 88888776554 457999999999974 899999
Q ss_pred HHHHHHHHhCCcccceeEE
Q 027305 155 AVREVKEETSIDTEFVEVL 173 (225)
Q Consensus 155 a~REl~EEtGl~~~~~~~l 173 (225)
|+||++||||+.+...++.
T Consensus 178 A~REL~EETG~~~~a~~lv 196 (291)
T PLN03143 178 AVREVEEETGIKLKLEDMV 196 (291)
T ss_pred HHHHHHHHHCCccccceEE
Confidence 9999999999986544433
No 66
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.55 E-value=6e-14 Score=114.96 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=74.9
Q ss_pred eeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEe-eEEcCCCCCHHHHHHHHHHHHhCCccccee-EEEEEEEEeeeeee
Q 027305 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVE-VLAFRYVIFLKRIF 185 (225)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~l~~~~~~~~~~~~ 185 (225)
..++++++++.+++|||+||..+...-+|.|.+| ||++++||++++||+||++||||+++.... +++.........
T Consensus 34 h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-- 111 (184)
T PRK03759 34 HLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDP-- 111 (184)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecC--
Confidence 4567778899899999999865432225789886 899999999999999999999999886433 232222111100
Q ss_pred eeCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEeccc
Q 027305 186 YVESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 186 ~~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
.........++|.+... +.+. .+.+|..+..|+++.+
T Consensus 112 ~~~~~~~~~~vf~~~~~-~~~~-~~~~Ev~~~~W~~~~e 148 (184)
T PRK03759 112 NGIVENEVCPVFAARVT-SALQ-PNPDEVMDYQWVDPAD 148 (184)
T ss_pred CCceeeEEEEEEEEEEC-CCCC-CChhHeeeEEEECHHH
Confidence 00112235567777764 4333 3446778888887653
No 67
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.54 E-value=4.5e-14 Score=115.97 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=74.8
Q ss_pred eeEEEEEEEeC-CceEEEEEeecCCCC----CCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeee
Q 027305 108 RVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLK 182 (225)
Q Consensus 108 ~~~v~~~v~~~-~~~vLl~~r~~~~~~----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~ 182 (225)
..+|++++++. ++++||+++.+.+.. ++..|++|||.+|+||++++||+||++||||+.+.....++... ..
T Consensus 44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~---~~ 120 (185)
T TIGR00052 44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFY---SS 120 (185)
T ss_pred CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEE---cC
Confidence 34667777765 478999988765542 35789999999999999999999999999999998776655432 11
Q ss_pred eeeeeCCccEEEEEEEEEeeCCeee---ecCCceeeeEEEEecc
Q 027305 183 RIFYVESKPLLFIIFQFEVYTSLPV---CHCGQAMMQRFEVLIA 223 (225)
Q Consensus 183 ~~~~~~~~~~~~~~f~~~~~~g~~~---~~e~~e~~~~f~v~~~ 223 (225)
. .......++|.++...+... +.+..+..+..++++.
T Consensus 121 ~----g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~ 160 (185)
T TIGR00052 121 P----GGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFS 160 (185)
T ss_pred C----CCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHH
Confidence 1 23356678888875543222 2223344566666653
No 68
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=2e-13 Score=104.25 Aligned_cols=104 Identities=23% Similarity=0.234 Sum_probs=66.0
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
.+++++...+ .+||++|...+ +.+.|.||||++++||++.+||.||++||||+++.... +.....+ ....
T Consensus 6 ~av~vl~~~~-~~lL~~r~~~~--~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~-l~~~~~~------~~~~ 75 (118)
T cd04674 6 VVVALLPVDD-GLLVIRRGIEP--GRGKLALPGGFIELGETWQDAVARELLEETGVAVDPAD-IRLFDVR------SAPD 75 (118)
T ss_pred EEEEEEEECC-CEEEEEeecCC--CCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccE-EEEEEEE------ecCC
Confidence 3334444444 46666665543 35899999999999999999999999999999986432 2222111 1123
Q ss_pred ccEEEEEEEEEe-eCCeeeecCCceeeeEEEEecc
Q 027305 190 KPLLFIIFQFEV-YTSLPVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 190 ~~~~~~~f~~~~-~~g~~~~~e~~e~~~~f~v~~~ 223 (225)
.+..+..|.... +.+.+....+.|..+|+.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 110 (118)
T cd04674 76 GTLLVFGLLPERRAADLPPFEPTDETTERAVVTAP 110 (118)
T ss_pred CeEEEEEEEeccccccCCCCCCCcceeeEEEccCC
Confidence 344444544443 3344455667777778776543
No 69
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.52 E-value=2.2e-13 Score=104.90 Aligned_cols=109 Identities=22% Similarity=0.249 Sum_probs=69.0
Q ss_pred EEEEEEEe---CCceEEEEEeecCC--CCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeee-
Q 027305 110 GVGAFVMN---GKREVLVVQENSGR--FRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKR- 183 (225)
Q Consensus 110 ~v~~~v~~---~~~~vLl~~r~~~~--~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~- 183 (225)
++++++++ ...+|||++|.... ....+.|++|||.++.||++.+||+||++||||+++. ...+..........
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~~~~~~~ 80 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSLKQSGGK 80 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEEECCCCe
Confidence 45556664 23469999864320 0135889999999999999999999999999999875 22222211111100
Q ss_pred -------eeeeCCccEEEEEEEEEeeCCeeeec--CCceeeeEEE
Q 027305 184 -------IFYVESKPLLFIIFQFEVYTSLPVCH--CGQAMMQRFE 219 (225)
Q Consensus 184 -------~~~~~~~~~~~~~f~~~~~~g~~~~~--e~~e~~~~f~ 219 (225)
.....-......+|..+.++|++... +.....+||.
T Consensus 81 ~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~ 125 (126)
T cd04662 81 VVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFD 125 (126)
T ss_pred EEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeec
Confidence 01112335667888888888777764 4445555554
No 70
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.52 E-value=1.6e-13 Score=109.85 Aligned_cols=110 Identities=17% Similarity=0.094 Sum_probs=76.1
Q ss_pred ceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEe-eEEcCCCCCHHHHHHHHHHHHhCCccccee--EEEEEEEEeeee
Q 027305 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVE--VLAFRYVIFLKR 183 (225)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~~--~l~~~~~~~~~~ 183 (225)
...+++++|++.+++|||+||.......+|.|++| ||+++.|| .+||+||++||||+++.... .++...+...
T Consensus 26 ~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~-- 101 (158)
T TIGR02150 26 LHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRAR-- 101 (158)
T ss_pred eEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEe--
Confidence 34567778899999999999876543346999997 79999999 49999999999999987654 2322222111
Q ss_pred eeeeCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEeccc
Q 027305 184 IFYVESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 184 ~~~~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
+. ...+....+|.++... .+.. ...|..+..|+++.+
T Consensus 102 -~~-~g~~~~~~~f~~~~~~-~~~~-~~~Ev~~~~W~~~~e 138 (158)
T TIGR02150 102 -DA-WGEHELCPVFFARAPV-PLNP-NPEEVAEYRWVSLEE 138 (158)
T ss_pred -cC-CCcEEEEEEEEEecCC-cccC-ChhHeeeEEEeCHHH
Confidence 11 1234566788877653 3333 346888888887653
No 71
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.50 E-value=3.7e-13 Score=103.88 Aligned_cols=102 Identities=22% Similarity=0.297 Sum_probs=63.4
Q ss_pred EEEEEEeCCc--eEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeE-EEEEEEEeeeeeeee
Q 027305 111 VGAFVMNGKR--EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV-LAFRYVIFLKRIFYV 187 (225)
Q Consensus 111 v~~~v~~~~~--~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~~~~~~~ 187 (225)
|.+++.+.++ ++|+.+... +.|.+|||.+++||++.+||.||++||||+++..... .+.. ...+..
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~------~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~-----~~~~~~ 71 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL------AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVW-----ERRFYQ 71 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC------CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceee-----eCCEee
Confidence 4455555544 566665542 4599999999999999999999999999998722111 1111 111222
Q ss_pred CCccEEEEEEEE-----EeeCCeeeecCCceeeeEEEEeccc
Q 027305 188 ESKPLLFIIFQF-----EVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 188 ~~~~~~~~~f~~-----~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
......+.++.+ +.+.+.+...+++. ...+||++..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~E~~~-i~~~Wv~l~~ 112 (126)
T cd04663 72 KRHFWHLTLCEVDQDLPDSWVHFVQDDGGHE-FRFFWVDLAS 112 (126)
T ss_pred ccEEEEEEEEEecCCCcccccCcccCCCCce-EEEEEEcccc
Confidence 233344444444 45556666666664 5777887753
No 72
>PRK08999 hypothetical protein; Provisional
Probab=99.49 E-value=3.9e-13 Score=118.40 Aligned_cols=93 Identities=20% Similarity=0.347 Sum_probs=71.2
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
.+++++.+.++++||+||.....+ .|.|+||||.+++||++.+||.||++||||+.+.....+....+. +++
T Consensus 7 ~~~~vi~~~~~~vLL~kR~~~~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~-------~~~ 78 (312)
T PRK08999 7 VAAGVIRDADGRILLARRPEGKHQ-GGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHD-------YPD 78 (312)
T ss_pred EEEEEEECCCCeEEEEEecCCCCC-CCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEE-------cCC
Confidence 444456677789999999876666 499999999999999999999999999999998766655554433 235
Q ss_pred ccEEEEEEEEEeeCCeeeecC
Q 027305 190 KPLLFIIFQFEVYTSLPVCHC 210 (225)
Q Consensus 190 ~~~~~~~f~~~~~~g~~~~~e 210 (225)
.....++|.+....+.+...+
T Consensus 79 ~~~~i~~y~~~~~~~~~~~~e 99 (312)
T PRK08999 79 KRVRLDVRRVTAWQGEPHGRE 99 (312)
T ss_pred CeEEEEEEEEEEecCcccCcc
Confidence 566778888887766554333
No 73
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.49 E-value=4e-13 Score=111.81 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=74.1
Q ss_pred eEEEEEEEeC-CceEEEEEeecCCCC----CCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeee
Q 027305 109 VGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKR 183 (225)
Q Consensus 109 ~~v~~~v~~~-~~~vLl~~r~~~~~~----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~ 183 (225)
-+|+++++++ +++|||+++.+.+.. ++-.|++|+|.+|+||++++||+|||.||||+.+.....++.. ++..
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~---~~sp 126 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSY---LASP 126 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEE---EcCC
Confidence 3666677776 479988887766542 1357999999999999999999999999999998766655432 1111
Q ss_pred eeeeCCccEEEEEEEEEeeC----CeeeecCCceeeeEEEEeccc
Q 027305 184 IFYVESKPLLFIIFQFEVYT----SLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 184 ~~~~~~~~~~~~~f~~~~~~----g~~~~~e~~e~~~~f~v~~~~ 224 (225)
.......++|.++... +.....+..|..+.+++++..
T Consensus 127 ----g~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e 167 (202)
T PRK10729 127 ----GGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQ 167 (202)
T ss_pred ----CcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHH
Confidence 2345667788777411 111233455666777777643
No 74
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.48 E-value=8.4e-13 Score=107.63 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=74.0
Q ss_pred EEEEeCC--ceEEEEEeecCCCCCCCcE-EEeeEEcCCCCCHHHHHHHHHHHHhCCccccee---EEEEEEEEeeeeeee
Q 027305 113 AFVMNGK--REVLVVQENSGRFRGTGIW-KFPTGVVDEGEDICVAAVREVKEETSIDTEFVE---VLAFRYVIFLKRIFY 186 (225)
Q Consensus 113 ~~v~~~~--~~vLl~~r~~~~~~~~~~w-~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~---~l~~~~~~~~~~~~~ 186 (225)
+++.|.+ +++|+.||.......+|.| .+|||++++||++.+||+||++||||+++.... .++.....+... .
T Consensus 39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~--~ 116 (180)
T cd03676 39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGE--A 116 (180)
T ss_pred EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcC--C
Confidence 4456665 8999999987766568999 589999999999999999999999999887543 333333222100 0
Q ss_pred eCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEeccc
Q 027305 187 VESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 187 ~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
....+...++|.+....+.....+..|..+..++++.+
T Consensus 117 ~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~e 154 (180)
T cd03676 117 GGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDE 154 (180)
T ss_pred CcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHH
Confidence 01233456677766433322233556788888887643
No 75
>PLN02709 nudix hydrolase
Probab=99.48 E-value=3.6e-13 Score=112.98 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=71.9
Q ss_pred ceEEEEEeecCCCCCCCcEEEeeEEcCCCC-CHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCccEEEEEEE
Q 027305 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGE-DICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESKPLLFIIFQ 198 (225)
Q Consensus 120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~ 198 (225)
.++||++|........|.|.||||++|++| ++.+||+||++||+|+.....++++....... .....+..|.
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t-------~sg~~V~P~V 123 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVN-------KKGMSVAPVI 123 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeEC-------CCCCEEEEEE
Confidence 479999998765445799999999999975 79999999999999999988899987654321 1223334444
Q ss_pred EEeeC--CeeeecCCceeeeEEEEecccC
Q 027305 199 FEVYT--SLPVCHCGQAMMQRFEVLIAFF 225 (225)
Q Consensus 199 ~~~~~--g~~~~~e~~e~~~~f~v~~~~~ 225 (225)
+.... .........|..+.|+|||.+|
T Consensus 124 ~~~~~~~~~~~~~np~EV~~vf~vPL~~l 152 (222)
T PLN02709 124 GFLHDKKAFKPLPNPAEVEEIFDVPLEMF 152 (222)
T ss_pred EEecCCCCccccCChhhhheeEEecHHHH
Confidence 33321 1111246689999999999864
No 76
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.48 E-value=8.6e-13 Score=100.83 Aligned_cols=83 Identities=24% Similarity=0.289 Sum_probs=63.0
Q ss_pred EEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCc
Q 027305 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESK 190 (225)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (225)
|.+++++ ++++||++++ .+.|++|||++++||++++||.||++||||+.+.....++...... ...
T Consensus 3 v~vi~~~-~~~vLl~~~~------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~-------~~~ 68 (118)
T cd04665 3 VLVICFY-DDGLLLVRHK------DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDL-------FES 68 (118)
T ss_pred EEEEEEE-CCEEEEEEeC------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecC-------CCC
Confidence 4445555 4789999876 2579999999999999999999999999999998888777643211 123
Q ss_pred cEEEEEEEEEeeCCeee
Q 027305 191 PLLFIIFQFEVYTSLPV 207 (225)
Q Consensus 191 ~~~~~~f~~~~~~g~~~ 207 (225)
.....+|.+....+...
T Consensus 69 ~~~~~~y~a~~~~~~~~ 85 (118)
T cd04665 69 GFETLVYPAVSAQLEEK 85 (118)
T ss_pred cEEEEEEEEEEEecccc
Confidence 55677788887766543
No 77
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.46 E-value=1.2e-12 Score=104.45 Aligned_cols=83 Identities=25% Similarity=0.164 Sum_probs=63.2
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeC
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVE 188 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (225)
..|++++..+ +++||+++.. ..|++|||.+++||++.+||.||++||||+.+.....++...... .
T Consensus 25 ~~V~ii~~~~-~~~LL~~~~~------~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~-------~ 90 (156)
T TIGR02705 25 NHVLVIPRYK-DQWLLTEHKR------RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEG-------E 90 (156)
T ss_pred CEEEEEEEEC-CEEEEEEEcC------CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecC-------C
Confidence 3555555554 5888887762 459999999999999999999999999999998888887543211 2
Q ss_pred CccEEEEEEEEEeeCCe
Q 027305 189 SKPLLFIIFQFEVYTSL 205 (225)
Q Consensus 189 ~~~~~~~~f~~~~~~g~ 205 (225)
......++|.++.....
T Consensus 91 ~~~~~~~vf~A~~~~~~ 107 (156)
T TIGR02705 91 STDFVKDVYFAEVSALE 107 (156)
T ss_pred CcEEEEEEEEEEEeccc
Confidence 35677888888877443
No 78
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.41 E-value=2.9e-12 Score=105.77 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=74.1
Q ss_pred eEEEEEEEeC-CceEEEEEeecCCCC-----CCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeee
Q 027305 109 VGVGAFVMNG-KREVLVVQENSGRFR-----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLK 182 (225)
Q Consensus 109 ~~v~~~v~~~-~~~vLl~~r~~~~~~-----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~ 182 (225)
.+|++++++. +++++|+++.+.+.+ ++-.|++|+|.+|+| ++++||+|||+||||+.+.....++.. ++.
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~---~~s 121 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFEL---YMS 121 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEE---EcC
Confidence 4566667775 679999988777651 457899999999976 699999999999999999877766543 222
Q ss_pred eeeeeCCccEEEEEEEEEeeCC---eeeecCCceeeeEEEEeccc
Q 027305 183 RIFYVESKPLLFIIFQFEVYTS---LPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 183 ~~~~~~~~~~~~~~f~~~~~~g---~~~~~e~~e~~~~f~v~~~~ 224 (225)
+. ......++|.++.... .+...+..|..+.+++++..
T Consensus 122 pG----~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e 162 (191)
T PRK15009 122 PG----GVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQ 162 (191)
T ss_pred Cc----ccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHH
Confidence 22 2345567777775311 11223345666777777653
No 79
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.34 E-value=2e-12 Score=110.98 Aligned_cols=125 Identities=21% Similarity=0.162 Sum_probs=93.3
Q ss_pred CceeeccCCceEEEEEeeCCCCCCCCCCCcceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHH
Q 027305 77 GFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAV 156 (225)
Q Consensus 77 gf~~h~~~~~~~~l~~~l~~~~~~~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~ 156 (225)
|-.......++.+.+ ..|....||....++-+++.+. +++||.++.++. +|++.+-+|+|++|||+++|+.
T Consensus 118 G~~~~~~~~g~~~~C-----~~cg~~~fPR~dP~vIv~v~~~-~~ilLa~~~~h~---~g~yS~LAGFVE~GETlE~AV~ 188 (279)
T COG2816 118 GTKTYPREGGWARVC-----PKCGHEHFPRIDPCVIVAVIRG-DEILLARHPRHF---PGMYSLLAGFVEPGETLEQAVA 188 (279)
T ss_pred CCcCccccCceeeeC-----CCCCCccCCCCCCeEEEEEecC-CceeecCCCCCC---CcceeeeeecccCCccHHHHHH
Confidence 333444455666642 3466667777777777666665 448888877665 5999999999999999999999
Q ss_pred HHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCccEEEEEEEEEeeCCeeeecCC-ceeeeEEE
Q 027305 157 REVKEETSIDTEFVEVLAFRYVIFLKRIFYVESKPLLFIIFQFEVYTSLPVCHCG-QAMMQRFE 219 (225)
Q Consensus 157 REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~~~~e~-~e~~~~f~ 219 (225)
||++||+|++++.++.++...+.++ +.++..|.++..+|+...++. -+-.+||.
T Consensus 189 REv~EE~Gi~V~~vrY~~SQPWPfP---------~SLMigf~aey~sgeI~~d~~Eleda~WFs 243 (279)
T COG2816 189 REVFEEVGIKVKNVRYVGSQPWPFP---------HSLMLGFMAEYDSGEITPDEGELEDARWFS 243 (279)
T ss_pred HHHHHhhCeEEeeeeEEeccCCCCc---------hhhhhhheeeeccccccCCcchhhhccccC
Confidence 9999999999999998888766554 567788888998998776662 35555554
No 80
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.17 E-value=5.1e-11 Score=103.08 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=55.3
Q ss_pred CCcceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEE
Q 027305 104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVI 179 (225)
Q Consensus 104 ~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~ 179 (225)
|+.....|..++++.+++.+|..|.... .+|+|..++|++|+|||++|||+||++||||++++.+.+.....+.
T Consensus 183 yPr~dPvVIm~li~~d~~~~LL~R~~r~--~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP 256 (345)
T KOG3084|consen 183 YPRTDPVVIMLLIDHDGKHALLGRQKRY--PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWP 256 (345)
T ss_pred ccCCCCeEEEEEEcCCCCEeeeecccCC--CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCC
Confidence 3444445666777777665544444333 3589999999999999999999999999999999888766655443
No 81
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.15 E-value=2.6e-10 Score=86.96 Aligned_cols=52 Identities=38% Similarity=0.667 Sum_probs=43.3
Q ss_pred ceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHH-HHHHHHHHHhCCccc--ceeEEEE
Q 027305 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICV-AAVREVKEETSIDTE--FVEVLAF 175 (225)
Q Consensus 120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~-aa~REl~EEtGl~~~--~~~~l~~ 175 (225)
+++|+.+++... +.|.+|||++++||++.+ ||+||++||||+.+. ....++.
T Consensus 24 ~~vl~~~~~~~~----~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~ 78 (161)
T COG0494 24 GEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGE 78 (161)
T ss_pred CEEeEEEccccC----CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeee
Confidence 789999988642 589999999999998888 999999999999987 3444443
No 82
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.14 E-value=5.1e-10 Score=95.66 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=48.0
Q ss_pred ceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEe-eEEcCCC----C----------C---HHHHHHHHHHHHhCCccc
Q 027305 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEG----E----------D---ICVAAVREVKEETSIDTE 168 (225)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~g----E----------~---~~~aa~REl~EEtGl~~~ 168 (225)
...++.++|+|.+|++||+||.......+|.|... +|++..| | + ..+||+||++||||+.+.
T Consensus 55 ~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~ 134 (247)
T PLN02552 55 LHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAE 134 (247)
T ss_pred eEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCcc
Confidence 34567778999999999999987766568999665 3444333 2 1 678999999999999965
Q ss_pred c
Q 027305 169 F 169 (225)
Q Consensus 169 ~ 169 (225)
.
T Consensus 135 ~ 135 (247)
T PLN02552 135 D 135 (247)
T ss_pred c
Confidence 3
No 83
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.11 E-value=1e-10 Score=90.82 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=54.7
Q ss_pred cceeEEEEEEEeCCc---eEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEE
Q 027305 106 SHRVGVGAFVMNGKR---EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRY 177 (225)
Q Consensus 106 ~~~~~v~~~v~~~~~---~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~ 177 (225)
..+..++++++..++ +|||++-.+++ ..|.+|+|++|++|+..+||.||+.||.|+.-...++++...
T Consensus 7 G~r~vagCi~~r~~~~~ieVLlvsSs~~~----~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~ 77 (145)
T KOG2839|consen 7 GFRLVAGCICYRSDKEKIEVLLVSSSKKP----HRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFE 77 (145)
T ss_pred CcEEEEEeeeeeecCcceEEEEEecCCCC----CCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchh
Confidence 345667777776444 79999887643 679999999999999999999999999999988877555443
No 84
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.10 E-value=8.8e-10 Score=90.45 Aligned_cols=43 Identities=30% Similarity=0.548 Sum_probs=37.8
Q ss_pred ceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcc
Q 027305 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167 (225)
Q Consensus 120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~ 167 (225)
-++|+++|.. .|.|.||||++++||++.+||+||++||||+.+
T Consensus 49 l~vLl~~r~~-----~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 49 LQFVAIKRPD-----SGEWAIPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred eEEEEEEeCC-----CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 3688888864 488999999999999999999999999997654
No 85
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.04 E-value=3.7e-09 Score=86.06 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=65.1
Q ss_pred eEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCccEEEEEEEEE
Q 027305 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESKPLLFIIFQFE 200 (225)
Q Consensus 121 ~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~ 200 (225)
.++|++..+.+. ++-..++|+|.+|.||++++||+|||+||||+. ......... .|.++ ++++....+.++.++
T Consensus 89 ~ivL~kQfRpP~-Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-gkv~~~s~~--~f~DP--Gltn~~~~iv~v~id 162 (225)
T KOG3041|consen 89 YIVLVKQFRPPT-GKICIELPAGLIDDGEDFEGAAIRELEEETGYK-GKVDMVSPT--VFLDP--GLTNCNLCIVVVDID 162 (225)
T ss_pred EEEEEEeecCCC-CcEEEEcccccccCCCchHHHHHHHHHHHhCcc-ceeeecccc--EEcCC--CCCCCceEEEEEEec
Confidence 577777766553 567889999999999999999999999999998 333323222 23333 346777777777776
Q ss_pred eeCCe----eeecCCceeeeEEEEecc
Q 027305 201 VYTSL----PVCHCGQAMMQRFEVLIA 223 (225)
Q Consensus 201 ~~~g~----~~~~e~~e~~~~f~v~~~ 223 (225)
.-..+ .+..+..|..+.|-+++.
T Consensus 163 g~~pEnqrp~q~ledgEfIev~~i~~~ 189 (225)
T KOG3041|consen 163 GDVPENQRPVQQLEDGEFIEVFLIPLS 189 (225)
T ss_pred CCCccccCccccCCCCceEEEEEeeHH
Confidence 53332 234455566666665554
No 86
>PLN02791 Nudix hydrolase homolog
Probab=99.00 E-value=2.8e-09 Score=103.37 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=78.2
Q ss_pred ceeEEEEEEEeC-CceEEEEEeecCCCCCCCcEEE-eeEEcCCCCCHHHHHHHHHHHHhCCcccc--eeEEEEEEEEeee
Q 027305 107 HRVGVGAFVMNG-KREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRYVIFLK 182 (225)
Q Consensus 107 ~~~~v~~~v~~~-~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~~--~~~l~~~~~~~~~ 182 (225)
...++.+++++. ++++||+||.......+|.|.+ |||+++.||+..+||+||++||+|+.+.. ...++........
T Consensus 31 ~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~ 110 (770)
T PLN02791 31 YHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVI 110 (770)
T ss_pred ceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeec
Confidence 345677788886 6899999998766656899999 79999999999999999999999998643 2334432211110
Q ss_pred eeeeeCCccEEEEEEEEEeeCCee---eecCCceeeeEEEEeccc
Q 027305 183 RIFYVESKPLLFIIFQFEVYTSLP---VCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 183 ~~~~~~~~~~~~~~f~~~~~~g~~---~~~e~~e~~~~f~v~~~~ 224 (225)
. ...-..+...++|.+......| .....+|+.+..+|.+.+
T Consensus 111 ~-~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~E 154 (770)
T PLN02791 111 N-DGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEE 154 (770)
T ss_pred c-CCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHH
Confidence 0 0000123456677766433322 123457888888887654
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.98 E-value=8.9e-09 Score=77.00 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=61.5
Q ss_pred EEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCccEE
Q 027305 114 FVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESKPLL 193 (225)
Q Consensus 114 ~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (225)
+++..++++||.||...+.++ |+|+||+|.++.+++.+++..|++.+|.++ ....++...|. +++++..
T Consensus 8 ~ii~~~~~~ll~kR~~~gl~~-glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~-------fth~~~~ 76 (118)
T cd03431 8 VVIRNDGRVLLEKRPEKGLLA-GLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHT-------FTHFRLT 76 (118)
T ss_pred EEEecCCeEEEEECCCCCCCC-cceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEe-------cCCeEEE
Confidence 344557899999999888885 999999999999999999999999988764 12223444333 3577888
Q ss_pred EEEEEEEeeCC
Q 027305 194 FIIFQFEVYTS 204 (225)
Q Consensus 194 ~~~f~~~~~~g 204 (225)
+.+|.+....+
T Consensus 77 ~~~~~~~~~~~ 87 (118)
T cd03431 77 LHVYLARLEGD 87 (118)
T ss_pred EEEEEEEEeCC
Confidence 99999887654
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.83 E-value=1.1e-08 Score=85.41 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=72.8
Q ss_pred EEEEEEEeC---CceEEEEEeecCCCCCCCcEEEeeEEcCCCC-CHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeee
Q 027305 110 GVGAFVMNG---KREVLVVQENSGRFRGTGIWKFPTGVVDEGE-DICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIF 185 (225)
Q Consensus 110 ~v~~~v~~~---~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~ 185 (225)
+|.+.+++. +-.||+.||.+......|.-+||||..|+.+ +-.++|.||..||.|++.....+++.....+.. .
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r--~ 122 (246)
T KOG3069|consen 45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLR--S 122 (246)
T ss_pred cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeec--c
Confidence 444444443 2469999998776656799999999999865 678999999999999999888877766544332 1
Q ss_pred eeCCccEEEEEEEEEeeCCeeeecCCceeeeEEEEeccc
Q 027305 186 YVESKPLLFIIFQFEVYTSLPVCHCGQAMMQRFEVLIAF 224 (225)
Q Consensus 186 ~~~~~~~~~~~f~~~~~~g~~~~~e~~e~~~~f~v~~~~ 224 (225)
+..-.+.+......... ........|..+.|+|||..
T Consensus 123 ~~~v~p~v~~l~~~~~l--~~~~ln~gEv~~~F~VPL~~ 159 (246)
T KOG3069|consen 123 GWSVFPVVGFLSDKKIL--PSLRLNSGEVESAFWVPLTD 159 (246)
T ss_pred CcccceeEEEEeccccc--ccccCCchheeeeeeeeHHH
Confidence 11122222222211111 22234457899999999864
No 89
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.59 E-value=2.5e-07 Score=69.61 Aligned_cols=86 Identities=20% Similarity=0.342 Sum_probs=56.3
Q ss_pred EEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCccE
Q 027305 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESKPL 192 (225)
Q Consensus 113 ~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~ 192 (225)
+++++.++++||.||...+.++ |+|+||.-..+...+ .+.+.+.+.+..|+.+.....++...|.+ +|++.
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~-GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~v~H~f-------SH~~~ 72 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLA-GLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSVEPLGTVKHVF-------SHRRW 72 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTT-T-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-S-SEEEEEE--------SSEEE
T ss_pred EEEEEeCCEEEEEECCCCChhh-cCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhheecCcEEEEc-------cceEE
Confidence 4778899999999999999996 999999988874334 55566666678888776666666666554 47889
Q ss_pred EEEEEEEEeeCCeee
Q 027305 193 LFIIFQFEVYTSLPV 207 (225)
Q Consensus 193 ~~~~f~~~~~~g~~~ 207 (225)
.+.+|.++.......
T Consensus 73 ~~~~~~~~~~~~~~~ 87 (114)
T PF14815_consen 73 TIHVYEVEVSADPPA 87 (114)
T ss_dssp EEEEEEEEEE-SS--
T ss_pred EEEEEEEEecCCCCC
Confidence 999999998766443
No 90
>PLN02839 nudix hydrolase
Probab=98.26 E-value=5e-05 Score=68.08 Aligned_cols=151 Identities=13% Similarity=0.107 Sum_probs=86.7
Q ss_pred CChHHHHHHHHHHHHHHHHcCcceEEEEcccccccchHHHHhcCceeeccCCceEEEEEeeCCCCCCCCCCCcc--eeEE
Q 027305 34 MDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASH--RVGV 111 (225)
Q Consensus 34 ~~~~~f~~~l~~~~~~w~~~~~~~iw~~~~~~~~~~~~~~~~~gf~~h~~~~~~~~l~~~l~~~~~~~p~~~~~--~~~v 111 (225)
.++++-.+.|...++.|++.|.=.=| .-+..++.... ..+-+..+.+ ...+..... .+-+
T Consensus 147 ~t~~~Rt~al~~v~~~lr~~g~~~gW------RnE~y~V~~~~------~~~~l~~iER------aA~~lfGi~tyGVHl 208 (372)
T PLN02839 147 QKPEDRTRAVADVIKILGDKGIIPGI------RNELYPVKPSF------NAPVFFSLER------AAAPYFGIKGYGVHM 208 (372)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCc------ccCccccccCC------CCcceEEEee------ccccccCceeEEEEE
Confidence 35778888899989999998752223 22222221110 0112223211 122222222 2222
Q ss_pred EEEEEe-CCceEEEEEeecCCCCCCCcEEE-eeEEcCCCCCHHHHHHHHHHHHhCCccc---ceeEEEEEEEEeeeeeee
Q 027305 112 GAFVMN-GKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTE---FVEVLAFRYVIFLKRIFY 186 (225)
Q Consensus 112 ~~~v~~-~~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~---~~~~l~~~~~~~~~~~~~ 186 (225)
.+++.. .+.++.+.||.......+|+|.- .+|.+..||++.++++||..||.|+... .....|...+.+...
T Consensus 209 NGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~--- 285 (372)
T PLN02839 209 NGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQ--- 285 (372)
T ss_pred EEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcC---
Confidence 333333 33568888887766666899986 6899999999999999999999999755 233344443322211
Q ss_pred eCCccEEEEEEEEEeeCCe
Q 027305 187 VESKPLLFIIFQFEVYTSL 205 (225)
Q Consensus 187 ~~~~~~~~~~f~~~~~~g~ 205 (225)
....+....+|-+++..+-
T Consensus 286 ~g~~~evly~YDLeLP~df 304 (372)
T PLN02839 286 YCFKRDVLFCYDLELPQDF 304 (372)
T ss_pred CccccCEEEEeeeecCCcc
Confidence 1233445557887776543
No 91
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=97.93 E-value=2.3e-05 Score=59.87 Aligned_cols=58 Identities=34% Similarity=0.602 Sum_probs=42.7
Q ss_pred EEEEEEEeC-Cc--eEEEEEeecCCCCC---CCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCccc
Q 027305 110 GVGAFVMNG-KR--EVLVVQENSGRFRG---TGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (225)
Q Consensus 110 ~v~~~v~~~-~~--~vLl~~r~~~~~~~---~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (225)
.+++++... +| .|||+.- .++.|. .|.|.+|.|....||++..||.||..||+|+.+.
T Consensus 5 SAGvLlYR~~aG~v~VLLvHP-GGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 5 SAGVLLYRARAGVVDVLLVHP-GGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred cceeEEEEecCCCEEEEEecC-CCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence 455555542 23 4555543 333332 6899999999999999999999999999999764
No 92
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.59 E-value=5.2e-05 Score=63.09 Aligned_cols=39 Identities=36% Similarity=0.662 Sum_probs=34.4
Q ss_pred eEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhC
Q 027305 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164 (225)
Q Consensus 121 ~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtG 164 (225)
+++.+||.. .+.|.+|||.+|+||.+-.+++||+.||.=
T Consensus 140 e~vavkr~d-----~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPD-----NGEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCC-----CCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 567778874 589999999999999999999999999973
No 93
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=97.58 E-value=0.00017 Score=58.02 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=52.8
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcEEEe-eEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~ 175 (225)
.+-.++++|.+|++||.||......=++.|.-- .|+--+||+..+||+|-+.+|+||+....+.+.+
T Consensus 34 rAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~i 101 (185)
T COG1443 34 RAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEI 101 (185)
T ss_pred hhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCcccc
Confidence 456678999999999999975443336778763 4777799999999999999999999875444443
No 94
>PRK10880 adenine DNA glycosylase; Provisional
Probab=96.56 E-value=0.0098 Score=53.59 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=48.2
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCC
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVES 189 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (225)
...++++..++++||.||...+.|+ |+|+||.. +. + ...++..|+.|+.......++...|. ++|
T Consensus 232 ~~~~~~~~~~~~~~l~~r~~~gl~~-gl~~fP~~--~~-~----~~~~~~~~~~~~~~~~~~~~~~~~H~-------fTH 296 (350)
T PRK10880 232 TGYFLLLQHGDEVWLEQRPPSGLWG-GLFCFPQF--AD-E----EELRQWLAQRGIAADNLTQLTAFRHT-------FSH 296 (350)
T ss_pred EEEEEEEEECCEEEEEECCccChhh-ccccCCCC--cc-h----hhHHHHHHhcCCchhhhcccCceEEE-------Eee
Confidence 3444455567899999999888886 99999963 21 1 12455667888753222223333333 346
Q ss_pred ccEEEEEEEEEee
Q 027305 190 KPLLFIIFQFEVY 202 (225)
Q Consensus 190 ~~~~~~~f~~~~~ 202 (225)
+...+.+|.+...
T Consensus 297 ~~~~~~~~~~~~~ 309 (350)
T PRK10880 297 FHLDIVPMWLPVS 309 (350)
T ss_pred EEEEEEEEEEEcc
Confidence 6777777766653
No 95
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=96.31 E-value=0.00046 Score=60.70 Aligned_cols=55 Identities=33% Similarity=0.529 Sum_probs=44.9
Q ss_pred eEEEEEEEeCC-ceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCccc
Q 027305 109 VGVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (225)
Q Consensus 109 ~~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (225)
...++++++.. .++||++... ...|.+|-|++.++|+-.++|.||+.||||.+..
T Consensus 83 Pv~ga~ild~~~sr~llv~g~q-----a~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 83 PVRGAIILDEKRSRCLLVKGWQ-----ASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred CCchHhhhhhhhhhhheeecee-----cccccccCccccccchhhhcchhcccchhhcCHH
Confidence 35566777754 5788887664 3459999999999999999999999999998864
No 96
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.26 E-value=0.019 Score=50.14 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=44.8
Q ss_pred CcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeEEEEEEEEeeeeeeeeCCccEEEEEEEEEee
Q 027305 136 GIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRYVIFLKRIFYVESKPLLFIIFQFEVY 202 (225)
Q Consensus 136 ~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 202 (225)
...+|-||.||+.-++.+-|..|+.||.|+++...++..+..... +.+......++|.|+.-
T Consensus 79 ~tielc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~-----g~~~s~sa~~l~y~ei~ 140 (405)
T KOG4432|consen 79 YTIELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVV-----GAHQSGSAQHLYYAEID 140 (405)
T ss_pred eeeeeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEe-----ccccCccchheeeeecc
Confidence 456788999999999999999999999999998887776554321 11222334456666653
No 97
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=95.93 E-value=0.036 Score=45.54 Aligned_cols=53 Identities=25% Similarity=0.370 Sum_probs=35.5
Q ss_pred eEEEEEE-EeCC--ceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCcc
Q 027305 109 VGVGAFV-MNGK--REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167 (225)
Q Consensus 109 ~~v~~~v-~~~~--~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~ 167 (225)
..|.+++ +... -+|||.|.. ...|.||||...+||+..++..|.+.+-.|..-
T Consensus 44 rsVe~Vllvh~h~~PHvLLLq~~------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 44 RSVEGVLLVHEHGHPHVLLLQIG------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp EEEEEEEEEEETTEEEEEEEEET------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred eEEEEEEEEecCCCcEEEEEecc------CccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence 3444444 4433 369999864 358999999999999999999999999999763
No 98
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=94.85 E-value=0.061 Score=43.31 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=35.1
Q ss_pred ceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhC
Q 027305 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164 (225)
Q Consensus 120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtG 164 (225)
-+|||.|-. ...+++|||..++||+-.+.+.|-+-|-+|
T Consensus 84 PHvLLLQig------~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 84 PHVLLLQIG------NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred CeEEEEeeC------CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 578888864 468999999999999999999999999999
No 99
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.65 E-value=0.12 Score=42.69 Aligned_cols=101 Identities=22% Similarity=0.233 Sum_probs=58.0
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcEEE-----e----eEEcC-CCCCHHHHHHHHHHHHhCCccccee-----EE
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKF-----P----TGVVD-EGEDICVAAVREVKEETSIDTEFVE-----VL 173 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~l-----P----gG~ve-~gE~~~~aa~REl~EEtGl~~~~~~-----~l 173 (225)
.+..+++++.++++||.||....+.-++.|.= | +...+ .+.....||+|-|.-|+||..+.+. .+
T Consensus 53 RaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~l 132 (225)
T KOG0142|consen 53 RAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFL 132 (225)
T ss_pred heeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccc
Confidence 35667899999999999998655444455532 2 21111 1234788999999999999876543 44
Q ss_pred EEEEEEeeeeeeeeCCccEEEEEEEEEeeCCeeeecC
Q 027305 174 AFRYVIFLKRIFYVESKPLLFIIFQFEVYTSLPVCHC 210 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~~~~e 210 (225)
+..++.-..+ -.++...+.+.+|.....+-.|.+.|
T Consensus 133 trihYkA~sd-g~wGEhEiDYiL~~~~~~~~nPnpnE 168 (225)
T KOG0142|consen 133 TRIHYKAPSD-GIWGEHEIDYILFLVKDVTLNPNPNE 168 (225)
T ss_pred eeeeeecCCC-CCcccceeeEEEEEeccCCCCCChhh
Confidence 4333322222 12334445555555554333333333
No 100
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=92.34 E-value=2 Score=34.51 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=40.8
Q ss_pred EEEeCCceEEEEEeecCCCCC--CCcEEE-eeEEcCCCC--C-HHH----HHHHHHHHHhCCc---ccceeEEEEEE
Q 027305 114 FVMNGKREVLVVQENSGRFRG--TGIWKF-PTGVVDEGE--D-ICV----AAVREVKEETSID---TEFVEVLAFRY 177 (225)
Q Consensus 114 ~v~~~~~~vLl~~r~~~~~~~--~~~w~l-PgG~ve~gE--~-~~~----aa~REl~EEtGl~---~~~~~~l~~~~ 177 (225)
++.+. .+||+..|-.++.-. .+.+.+ -||++..++ + ..+ -+.|||.||.++. ......+|...
T Consensus 67 vi~~e-devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlIN 142 (203)
T COG4112 67 VIMDE-DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIN 142 (203)
T ss_pred EEecC-CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeec
Confidence 44554 599999987543110 355666 589998654 3 333 2679999999998 44556666653
No 101
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=91.93 E-value=0.36 Score=42.09 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=25.5
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeE
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTG 143 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG 143 (225)
...+++.+.++++|+.+|...+.++ |+|+||+.
T Consensus 229 ~~~~~~~~~~~~~~~~~r~~~~~~~-gl~~~p~~ 261 (275)
T TIGR01084 229 TYFLVLQNYDGEVLLEQRPEKGLWG-GLYCFPQF 261 (275)
T ss_pred EEEEEEEeCCCeEEEEeCCCCchhh-ccccCCCC
Confidence 3444445667899999999888885 99999973
No 102
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=91.00 E-value=0.51 Score=41.43 Aligned_cols=36 Identities=25% Similarity=0.109 Sum_probs=29.8
Q ss_pred cEEEeeEEcCCCCCHHHHHHHHHHHHhCCcccceeE
Q 027305 137 IWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172 (225)
Q Consensus 137 ~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 172 (225)
..+|-.|.|+..-+..+-|.||..||+|+++...++
T Consensus 285 TlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~ 320 (405)
T KOG4432|consen 285 TLELCAGRVDDPFSDPEKAARESVEECGYDLPEDSF 320 (405)
T ss_pred eeeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHH
Confidence 456668889887888999999999999999876543
No 103
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=88.19 E-value=1.3 Score=39.74 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=35.1
Q ss_pred CCCCCcceeEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCC
Q 027305 101 LPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDE 147 (225)
Q Consensus 101 ~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~ 147 (225)
.+........++.++.+.++++++.+|...+.++ |+|+||......
T Consensus 228 ~~k~~~~~~~~~~~~~~~~~~~~l~kr~~~gl~~-gl~~fP~~e~~~ 273 (342)
T COG1194 228 KPKKKLPRRFAAFLILNRDGEVLLEKRPEKGLLG-GLWCFPQFEDEA 273 (342)
T ss_pred CcccccchheeeEEEEccCcchhhhhCcccCcee-cccccccccccc
Confidence 3333334556777778888999999999998886 999999976544
No 104
>PRK13910 DNA glycosylase MutY; Provisional
Probab=80.68 E-value=2.5 Score=37.13 Aligned_cols=29 Identities=14% Similarity=0.317 Sum_probs=21.2
Q ss_pred EEEEEEeCCceEEEEEeecCCCCCCCcEEEee
Q 027305 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPT 142 (225)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPg 142 (225)
..+++.+ ++++||.||. .+.|+ |+|+||+
T Consensus 189 ~~~~~~~-~~~~ll~kr~-~~l~~-gl~~fP~ 217 (289)
T PRK13910 189 YLGVVIQ-NNQIALEKIE-QKLYL-GMHHFPN 217 (289)
T ss_pred EEEEEEE-CCEEEEEECC-Cchhc-ccccCCC
Confidence 3334444 5789999885 56785 9999996
No 105
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=80.56 E-value=2.5 Score=36.22 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=37.5
Q ss_pred ceEEEEEeecCCCCCCCcEEEeeEEc-CCCCCHHHHHHHHHHHHhCCcc
Q 027305 120 REVLVVQENSGRFRGTGIWKFPTGVV-DEGEDICVAAVREVKEETSIDT 167 (225)
Q Consensus 120 ~~vLl~~r~~~~~~~~~~w~lPgG~v-e~gE~~~~aa~REl~EEtGl~~ 167 (225)
.-+||++++.+. .+.|.||-+.. ++++++..+|.|+|++-.|=..
T Consensus 139 ~LyLLV~~k~g~---~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~ 184 (263)
T KOG4548|consen 139 KLYLLVKRKFGK---SSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENK 184 (263)
T ss_pred eEEEEEeeccCc---cceeeCCCcccCCccchHHHHHHHHHHHHhcchh
Confidence 458888866543 57999999999 8999999999999999888543
No 106
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=68.95 E-value=4.7 Score=24.57 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=12.0
Q ss_pred EEeeEEcCCCCCHHHHHHHHHHHHh
Q 027305 139 KFPTGVVDEGEDICVAAVREVKEET 163 (225)
Q Consensus 139 ~lPgG~ve~gE~~~~aa~REl~EEt 163 (225)
..-||...||--+..++.||+-||+
T Consensus 12 tClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 12 TCLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HHhcccCCCCCCCchHHHHHHHHHH
Confidence 3457888889888899999999996
No 107
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=62.41 E-value=30 Score=29.87 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=34.4
Q ss_pred eEEEEEeecCC-CCCCCcEE-EeeEEcCCCCCHHHHHHHHHHHHhCCccc
Q 027305 121 EVLVVQENSGR-FRGTGIWK-FPTGVVDEGEDICVAAVREVKEETSIDTE 168 (225)
Q Consensus 121 ~vLl~~r~~~~-~~~~~~w~-lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (225)
.+.+.||.... .| ++.|. +-+|.+.-|-.+.++|+.|..||..++..
T Consensus 149 ~iWvprRS~TKqTW-P~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~ 197 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTW-PGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSD 197 (306)
T ss_pred EEEecccCCccccC-cchhhhhhccccccCchHHHHHHHHHHHhcCCchh
Confidence 35555654322 22 45555 35889999999999999999999999873
No 108
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=44.03 E-value=5.1 Score=35.73 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=45.6
Q ss_pred CCCCCCCCcceeEEEEEEEe--CCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHHHHHHHhCCccc
Q 027305 98 ANTLPANASHRVGVGAFVMN--GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (225)
Q Consensus 98 ~~~~p~~~~~~~~v~~~v~~--~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (225)
-++.|.+.......+.++.+ .+.-+...-+... +-.|.||.|.+..||-+.++++|+..||+|++..
T Consensus 228 vak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~----~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 228 VAKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAK----PENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred hhcCcccCccchhHHhhhhccccccceeecccccc----cccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 34555555555555444444 2333344433322 3679999999999999999999999999998754
No 109
>PF12860 PAS_7: PAS fold
Probab=42.95 E-value=11 Score=27.38 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=33.5
Q ss_pred EEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEcCCCCCHHHHHHH
Q 027305 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVR 157 (225)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~R 157 (225)
..++++++.++++++..++. ...|.+|...+.+|-+..+.+.+
T Consensus 5 ~~Gv~v~D~~~rl~~~N~~~-----~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 5 PQGVAVFDSDGRLVFWNQRF-----RELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred CceEEEEcCCCeEEeEcHHH-----HHHhCCCHHHhcCCCCHHHHHHH
Confidence 45667899999999998875 36899999988888886654443
No 110
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.56 E-value=99 Score=20.52 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.5
Q ss_pred CcEEEeeEEcCCCCC
Q 027305 136 GIWKFPTGVVDEGED 150 (225)
Q Consensus 136 ~~w~lPgG~ve~gE~ 150 (225)
..|-+|||.+-.+-.
T Consensus 22 ~GWl~Pgg~vi~NPl 36 (60)
T PF07026_consen 22 NGWLMPGGKVITNPL 36 (60)
T ss_pred ceeecCCCeeEcCHH
Confidence 459999999976543
No 111
>PF14443 DBC1: DBC1
Probab=35.35 E-value=1.8e+02 Score=22.39 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=36.3
Q ss_pred CcEEEe--eEEcCCC-CCHHHHHHHHHHHHhCCcccce-eEEEEEEEEeeeee-eeeCCccEEEEEEEEEee
Q 027305 136 GIWKFP--TGVVDEG-EDICVAAVREVKEETSIDTEFV-EVLAFRYVIFLKRI-FYVESKPLLFIIFQFEVY 202 (225)
Q Consensus 136 ~~w~lP--gG~ve~g-E~~~~aa~REl~EEtGl~~~~~-~~l~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~ 202 (225)
|.|.-- ||-.+.+ ..+..+|+|=++|-||++...- .=..+.+.+|.... ...+.+.....+|.-+.+
T Consensus 24 G~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~Ct~W~rf~Ei~Y~R~~~~~~~~~~EivVlFlPd~~ 95 (126)
T PF14443_consen 24 GPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNCTQWYRFAEIHYYRPGSDGFPSHQEIVVLFLPDVS 95 (126)
T ss_pred CcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhcCccceeeEEEEecCCCCCCCceeEEEEEEecCHH
Confidence 555433 3333332 2488999999999999997532 12223333433211 112344556666666554
No 112
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=32.44 E-value=25 Score=31.58 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=19.4
Q ss_pred EcCCCCCHHHHHHHHHHHHhCCcc
Q 027305 144 VVDEGEDICVAAVREVKEETSIDT 167 (225)
Q Consensus 144 ~ve~gE~~~~aa~REl~EEtGl~~ 167 (225)
.|+..+-..+.+.||++||+++-.
T Consensus 408 ~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 408 GVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred CCChhhcccHHHHHHHHHhcCcce
Confidence 466667778899999999999753
No 113
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=23.58 E-value=1.5e+02 Score=23.59 Aligned_cols=42 Identities=7% Similarity=0.140 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCcceEEEEcccccccchHHHHhcCceee
Q 027305 40 ASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFH 81 (225)
Q Consensus 40 ~~~l~~~~~~w~~~~~~~iw~~~~~~~~~~~~~~~~~gf~~h 81 (225)
++.++..+..+++.+...||+.+...+........+.||.+.
T Consensus 142 ~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~ 183 (191)
T TIGR02382 142 AELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIE 183 (191)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccc
Confidence 344555666677888999999999888888888889999764
No 114
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=21.37 E-value=1.8e+02 Score=20.91 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHHHHHHcCcceEEEEcccccccchHHHHhcCceeec
Q 027305 35 DPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHH 82 (225)
Q Consensus 35 ~~~~f~~~l~~~~~~w~~~~~~~iw~~~~~~~~~~~~~~~~~gf~~h~ 82 (225)
..-+|...++..++.+.+. +..+|=.+-..+...+.-+-.-|+.||.
T Consensus 37 ~~~eF~k~i~~~~d~~l~~-Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 37 ERREFRKLIKEYLDKMLKQ-YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhHHHHHHHHHHHHHHHHH-hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 3356999999889888877 7778877777777788777778988874
No 115
>PF10150 RNase_E_G: Ribonuclease E/G family; InterPro: IPR019307 Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs []. RNA-binding protein AU-1 binds to RNA loop regions that are with AU-rich sequences [].; PDB: 2BX2_L 2VRT_D 2VMK_D 2C4R_L 1SMX_B 1SLJ_A 2C0B_L 1SN8_B.
Probab=20.46 E-value=44 Score=29.00 Aligned_cols=54 Identities=13% Similarity=0.270 Sum_probs=36.3
Q ss_pred CCcccccC--CcccccceeccccCCCcEEEec-CCCCChHHHHHHHHHHHHHHHHcC
Q 027305 1 MSASVNSS--SATVNKFLNGINDNYGGVVVQM-NEPMDPQLFASLLKSSISHWRQQA 54 (225)
Q Consensus 1 ~~~~~~~~--~~~~~~~~~~~~d~~~gv~i~~-~~~~~~~~f~~~l~~~~~~w~~~~ 54 (225)
+|.+|.+. ..++.++++.....--|++|.+ ....+.++..+.+..-...|.+-.
T Consensus 18 vSrKI~d~~~R~~Lk~i~~~~~~~~~GvIiRT~A~~a~~e~L~~El~~L~~~w~~I~ 74 (271)
T PF10150_consen 18 VSRKISDEEERERLKKILESLLPEGEGVIIRTAAAGASEEELEKELEELREKWEEIQ 74 (271)
T ss_dssp E-TTS-TH-HHHHHHHHHHTS--TT-EEEE-GGGGGS-HHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCchhHHHHHHHHHHhCCCCCeEEEecCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 47777776 3466777766677778999987 556788999999998889998764
No 116
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=20.27 E-value=36 Score=27.91 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=26.6
Q ss_pred eEEEEEEEeCCceEEEEEeecCCCCCCCcEEEeeEEc---CCCCCHHHHH
Q 027305 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVV---DEGEDICVAA 155 (225)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~v---e~gE~~~~aa 155 (225)
+|..++++-.+|++.+..|..... ..-.-.||||.- ..|+++.|+.
T Consensus 30 ~G~R~lvv~~~g~t~~~~r~g~~~-~~f~s~lP~g~~~~~~~g~tILDci 78 (186)
T cd09232 30 VGKRCLVVASKGKTVARSKNGRTL-HRFSSALPGGSRKTSNSGYTILDCI 78 (186)
T ss_pred CceEEEEEEeCCEEEEEeCCCCEE-EecccCCCCCCcCCCCCCCEEEEEe
Confidence 455666666678888777653221 123456898864 3455555443
Done!