Your job contains 1 sequence.
>027306
MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNV
TITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNM
VVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSG
YDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027306
(225 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2207190 - symbol:emb2394 "embryo defective 239... 894 1.4e-89 1
TIGR_CMR|CHY_2294 - symbol:CHY_2294 "ribosomal protein L6... 463 6.4e-44 1
TIGR_CMR|CPS_0616 - symbol:CPS_0616 "ribosomal protein L6... 461 1.0e-43 1
TIGR_CMR|GSU_2842 - symbol:GSU_2842 "ribosomal protein L6... 458 2.2e-43 1
UNIPROTKB|P66311 - symbol:rplF "50S ribosomal protein L6"... 453 7.3e-43 1
UNIPROTKB|P46898 - symbol:rplF "50S ribosomal protein L6"... 446 4.0e-42 1
TIGR_CMR|BA_0125 - symbol:BA_0125 "ribosomal protein L6" ... 436 4.6e-41 1
TIGR_CMR|CJE_1860 - symbol:CJE_1860 "ribosomal protein L6... 426 5.3e-40 1
TIGR_CMR|SPO_0500 - symbol:SPO_0500 "ribosomal protein L6... 421 1.8e-39 1
UNIPROTKB|Q9KNZ9 - symbol:rplF "50S ribosomal protein L6"... 410 2.6e-38 1
TIGR_CMR|VC_2581 - symbol:VC_2581 "ribosomal protein L6" ... 410 2.6e-38 1
TIGR_CMR|CBU_0253 - symbol:CBU_0253 "ribosomal protein L6... 399 3.9e-37 1
TIGR_CMR|DET_0489 - symbol:DET_0489 "ribosomal protein L6... 397 6.3e-37 1
TIGR_CMR|SO_0246 - symbol:SO_0246 "ribosomal protein L6" ... 397 6.3e-37 1
UNIPROTKB|P0AG55 - symbol:rplF "50S ribosomal subunit pro... 394 1.3e-36 1
TIGR_CMR|ECH_0424 - symbol:ECH_0424 "ribosomal protein L6... 291 1.1e-25 1
POMBASE|SPAC12G12.08 - symbol:mrpl6 "mitochondrial riboso... 288 2.2e-25 1
ASPGD|ASPL0000044544 - symbol:AN1770 species:162425 "Emer... 279 2.0e-24 1
SGD|S000001190 - symbol:MRPL6 "Mitochondrial ribosomal pr... 275 5.3e-24 1
TIGR_CMR|APH_0295 - symbol:APH_0295 "ribosomal protein L6... 268 2.9e-23 1
TAIR|locus:2062200 - symbol:AT2G18400 species:3702 "Arabi... 245 8.0e-21 1
TIGR_CMR|NSE_0281 - symbol:NSE_0281 "ribosomal protein L6... 227 6.5e-19 1
CGD|CAL0005711 - symbol:MRPL6 species:5476 "Candida albic... 224 1.4e-18 1
DICTYBASE|DDB_G0294038 - symbol:mrpl6 "ribosomal protein ... 143 1.1e-12 2
DICTYBASE|DDB_G0278959 - symbol:rpl9 "60S ribosomal prote... 123 2.5e-06 1
SGD|S000003115 - symbol:RPL9A "Ribosomal 60S subunit prot... 110 0.00015 1
SGD|S000005011 - symbol:RPL9B "Ribosomal 60S subunit prot... 109 0.00021 1
ZFIN|ZDB-GENE-030131-8646 - symbol:rpl9 "ribosomal protei... 108 0.00029 1
UNIPROTKB|E2R149 - symbol:RPL9 "Uncharacterized protein" ... 104 0.00090 1
UNIPROTKB|P32969 - symbol:RPL9 "60S ribosomal protein L9"... 104 0.00090 1
UNIPROTKB|I3LP78 - symbol:RPL9 "Uncharacterized protein" ... 104 0.00090 1
MGI|MGI:1298373 - symbol:Rpl9 "ribosomal protein L9" spec... 104 0.00090 1
RGD|62049 - symbol:Rpl9 "ribosomal protein L9" species:10... 104 0.00090 1
>TAIR|locus:2207190 [details] [associations]
symbol:emb2394 "embryo defective 2394" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0015934 "large ribosomal subunit"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0009657 "plastid organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0016020
GO:GO:0006412 GO:GO:0009941 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AC000098 EMBL:AY040077 EMBL:AF360265
EMBL:AY085715 IPI:IPI00527924 PIR:C86186 RefSeq:NP_172011.1
UniGene:At.24632 UniGene:At.68070 ProteinModelPortal:O23049
SMR:O23049 STRING:O23049 PaxDb:O23049 PRIDE:O23049 ProMEX:O23049
EnsemblPlants:AT1G05190.1 GeneID:839273 KEGG:ath:AT1G05190
GeneFarm:69 TAIR:At1g05190 eggNOG:COG0097 HOGENOM:HOG000039903
InParanoid:O23049 KO:K02933 OMA:INNMVVG PhylomeDB:O23049
ProtClustDB:CLSN2681987 EvolutionaryTrace:O23049
Genevestigator:O23049 GermOnline:AT1G05190 Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 TIGRFAMs:TIGR03654 Uniprot:O23049
Length = 223
Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
Identities = 174/226 (76%), Positives = 198/226 (87%)
Query: 1 MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNV 60
MASS+ SSF +S F G+RN F +S+ P +VG+S KTIECKESRIGKQPI VPSNV
Sbjct: 1 MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 57
Query: 61 TITLGGQDLKVKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 119
TI L GQDLKVKGPLGEL+L YPREV++ +E+S FLRV+KTVETRRANQMHGLFRTLTDN
Sbjct: 58 TIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDN 117
Query: 120 MVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVS 179
MVVGVSKGFEKKL +VGVGYRA ++G+ LVL+LGFSHPV+M IPD +KV VEENTRITVS
Sbjct: 118 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVS 177
Query: 180 GYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK 225
GYDKS IGQFAA++RKWRPPEPYKGKGVKY DE++RRKEGKAGKKK
Sbjct: 178 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223
>TIGR_CMR|CHY_2294 [details] [associations]
symbol:CHY_2294 "ribosomal protein L6" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 RefSeq:YP_361103.1 HSSP:Q5SHQ3
ProteinModelPortal:Q3A9T1 SMR:Q3A9T1 STRING:Q3A9T1 GeneID:3726911
KEGG:chy:CHY_2294 PATRIC:21277659
BioCyc:CHYD246194:GJCN-2293-MONOMER Uniprot:Q3A9T1
Length = 182
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 88/178 (49%), Positives = 123/178 (69%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SRIG++PI VP V + + G + VKGP G L+ + ++K+ + S + V + + +
Sbjct: 2 SRIGRKPIPVPQGVEVKVEGTTVTVKGPKGSLTREFHPDMKITFDGSQILVERPSDEKEH 61
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
+HGL RTL +NM+VGV+ G++K L++VGVGYRAA +G+ LVL++G+SHPV M P+GI
Sbjct: 62 KALHGLTRTLINNMIVGVTNGYQKSLELVGVGYRAAKQGRKLVLTVGYSHPVEMDPPEGI 121
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKK 224
++ V +I V G DK +G FAA+IR R PEPYKGKG+KY DEVIRRK GK G K
Sbjct: 122 EIEVPAQNQIIVKGIDKELVGNFAATIRAVREPEPYKGKGIKYTDEVIRRKAGKTGGK 179
>TIGR_CMR|CPS_0616 [details] [associations]
symbol:CPS_0616 "ribosomal protein L6" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 HAMAP:MF_01365_B PANTHER:PTHR11655:SF6
HSSP:Q5SHQ3 RefSeq:YP_267366.1 ProteinModelPortal:Q488Z8 SMR:Q488Z8
STRING:Q488Z8 PRIDE:Q488Z8 GeneID:3522781 KEGG:cps:CPS_0616
PATRIC:21464559 BioCyc:CPSY167879:GI48-703-MONOMER Uniprot:Q488Z8
Length = 177
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 92/174 (52%), Positives = 117/174 (67%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SR+ K P+ VP+ VTITL GQD+ VKGP+GELS +V V +E++ + + + A
Sbjct: 2 SRVAKAPVVVPAGVTITLSGQDITVKGPIGELSRTIHSDVVVSQEENNIITNIVADVKGA 61
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
G R L +NMV GVSKGFEKKL + GVGYRA G+ L LSLGFSHP++ IP+GI
Sbjct: 62 WAQAGTTRALINNMVEGVSKGFEKKLVLQGVGYRAKAAGKSLDLSLGFSHPIKHAIPEGI 121
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
T +T+ G DK +GQ AA+IR +R PEPYKGKGV+YVDE +RRKE K
Sbjct: 122 TCETPSQTEVTLKGCDKHLVGQTAANIRAYRKPEPYKGKGVRYVDEYVRRKEAK 175
>TIGR_CMR|GSU_2842 [details] [associations]
symbol:GSU_2842 "ribosomal protein L6" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
GO:GO:0006412 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:NP_953885.1
ProteinModelPortal:Q749A2 GeneID:2687150 KEGG:gsu:GSU2842
PATRIC:22028531 BioCyc:GSUL243231:GH27-2808-MONOMER Uniprot:Q749A2
Length = 179
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 91/178 (51%), Positives = 120/178 (67%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SRIGK+PIE+PS V + L ++GP G+LS V ++ S + V++ + +A
Sbjct: 2 SRIGKRPIEIPSGVKVEFSDSVLTIEGPKGKLSRQVMDGVSLEITPSSIEVKRADDGLKA 61
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
HGL RTL +NMVVGV+KGFE+ L++ GVGYRA +G VL LSLG+SHP+ +P GI
Sbjct: 62 RSAHGLTRTLVNNMVVGVTKGFERALEINGVGYRAEAKGDVLNLSLGYSHPINYALPAGI 121
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKK 224
V V++ T++ V G DK +GQ AA IR +R PEPYKGKG+KY DE I RK GK GKK
Sbjct: 122 IVEVDKMTKLVVKGIDKELVGQTAAKIRSFRGPEPYKGKGIKYADEKILRKAGKTGKK 179
>UNIPROTKB|P66311 [details] [associations]
symbol:rplF "50S ribosomal protein L6" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0040007 "growth"
evidence=IMP] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0005886
GO:GO:0040007 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 GO:GO:0005840 EMBL:BX842574
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 PIR:B70644
RefSeq:NP_215233.1 RefSeq:NP_335164.1 RefSeq:YP_006514063.1
ProteinModelPortal:P66311 SMR:P66311 PRIDE:P66311
EnsemblBacteria:EBMYCT00000000628 EnsemblBacteria:EBMYCT00000070706
GeneID:13318608 GeneID:888433 GeneID:926037 KEGG:mtc:MT0744
KEGG:mtu:Rv0719 KEGG:mtv:RVBD_0719 PATRIC:18123371
TubercuList:Rv0719 Uniprot:P66311
Length = 179
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 90/178 (50%), Positives = 119/178 (66%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDR-EDSFLRVRKTVETRR 105
SRIGKQPI VP+ V +T+ GQ + VKGP G L L +KV R +D + V + + RR
Sbjct: 2 SRIGKQPIPVPAGVDVTIEGQSISVKGPKGTLGLTVAEPIKVARNDDGAIVVTRPDDERR 61
Query: 106 ANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDG 165
+HGL RTL N+V GV++G+ K+++ GVGYR L+G L +LG+SHPV + P+G
Sbjct: 62 NRSLHGLSRTLVSNLVTGVTQGYTTKMEIFGVGYRVQLKGSNLEFALGYSHPVVIEAPEG 121
Query: 166 IKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGK 223
I V+ T+ TVSG DK +GQ AA+IR+ R P+PYKGKGV+Y E IRRK GK GK
Sbjct: 122 ITFAVQAPTKFTVSGIDKQKVGQIAANIRRLRRPDPYKGKGVRYEGEQIRRKVGKTGK 179
>UNIPROTKB|P46898 [details] [associations]
symbol:rplF "50S ribosomal protein L6" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AL009126 GenomeReviews:AL009126_GR
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 EMBL:L47971 EMBL:D64125 PIR:B69695
RefSeq:NP_388012.1 ProteinModelPortal:P46898 SMR:P46898
EnsemblBacteria:EBBACT00000001337 GeneID:938229 KEGG:bsu:BSU01310
PATRIC:18971771 GenoList:BSU01310 BioCyc:BSUB:BSU01310-MONOMER
Uniprot:P46898
Length = 179
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 85/178 (47%), Positives = 124/178 (69%)
Query: 47 SRIGKQPIEVPSNVTITLGGQD-LKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRR 105
SR+GK+ +E+PS+VT+TL + + VKGP GEL+ + ++++ ED+ L V + + +
Sbjct: 2 SRVGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEIKVEDNVLTVARPSDQKE 61
Query: 106 ANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDG 165
+HG R+L NMV GVSKGFE+ L++VGVGYRA+ G LVL++G+SHPV + +G
Sbjct: 62 HRALHGTTRSLLGNMVEGVSKGFERGLELVGVGYRASKSGNKLVLNVGYSHPVEIVPEEG 121
Query: 166 IKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGK 223
I++ V T++ V G DK +G AA+IR R PEPYKGKG++Y EV+RRKEGK+ K
Sbjct: 122 IEIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKGKGIRYEGEVVRRKEGKSAK 179
>TIGR_CMR|BA_0125 [details] [associations]
symbol:BA_0125 "ribosomal protein L6" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 RefSeq:NP_842693.1 RefSeq:YP_016730.1
RefSeq:YP_026411.1 HSSP:P02391 ProteinModelPortal:Q81VR5 SMR:Q81VR5
DNASU:1087011 EnsemblBacteria:EBBACT00000009556
EnsemblBacteria:EBBACT00000015765 EnsemblBacteria:EBBACT00000024025
GeneID:1087011 GeneID:2818227 GeneID:2851257 KEGG:ban:BA_0125
KEGG:bar:GBAA_0125 KEGG:bat:BAS0125 ProtClustDB:PRK05498
BioCyc:BANT260799:GJAJ-136-MONOMER
BioCyc:BANT261594:GJ7F-138-MONOMER HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 Uniprot:Q81VR5
Length = 179
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 86/178 (48%), Positives = 121/178 (67%)
Query: 47 SRIGKQPIEVPSNVTITLGGQD-LKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRR 105
SRIGK+ +E+P+ VTIT+ + + VKGP GEL+ + ++ + E++ L V + E +
Sbjct: 2 SRIGKKILEIPAGVTITVAEDNTVTVKGPKGELTRTFNADMLIKIEENTLTVERPSEQKE 61
Query: 106 ANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDG 165
+HG R L NMV GV++GF + L++VGVGYRA +G LVLS+G+SHPV MT G
Sbjct: 62 HRALHGTTRALIGNMVEGVTEGFARGLELVGVGYRAQKQGDKLVLSVGYSHPVEMTPEAG 121
Query: 166 IKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGK 223
++V V T+I + G DK +G+FAA+IR R PEPYKGKG++Y EV+RRKEGK K
Sbjct: 122 LEVEVPAPTKIVIKGIDKQRVGEFAANIRAVRAPEPYKGKGIRYEGEVVRRKEGKTAK 179
>TIGR_CMR|CJE_1860 [details] [associations]
symbol:CJE_1860 "ribosomal protein L6" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:YP_179830.1
ProteinModelPortal:Q5HSA5 STRING:Q5HSA5 GeneID:3232487
KEGG:cjr:CJE1860 PATRIC:20045552
BioCyc:CJEJ195099:GJC0-1899-MONOMER Uniprot:Q5HSA5
Length = 178
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 92/179 (51%), Positives = 121/179 (67%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVK-GPLGELSLVYPREVKVDREDSFLRVRKTVETRR 105
SRIGKQPI +P+ V + L G LK K G L + L V V+ +D+ + E R+
Sbjct: 2 SRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAK-ELDTKANVNVEIKDNNILFSPKGEDRQ 60
Query: 106 ANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDG 165
+ G +R L N+VVG+++GF K L++ GVGY+AAL+G+VL LSLGFSHP+ IP+G
Sbjct: 61 SRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKVLELSLGFSHPINYDIPEG 120
Query: 166 IKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKK 224
I++ V++NT I V G DK +GQ AA IR++RPPEPYKGKGVKY DE I RK GK KK
Sbjct: 121 IEIVVDKNT-IAVKGSDKQVVGQVAAQIREFRPPEPYKGKGVKYSDERIIRKAGKTSKK 178
>TIGR_CMR|SPO_0500 [details] [associations]
symbol:SPO_0500 "ribosomal protein L6" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:YP_165762.1
ProteinModelPortal:Q5LW43 SMR:Q5LW43 GeneID:3195456
KEGG:sil:SPO0500 PATRIC:23374261 Uniprot:Q5LW43
Length = 177
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 78/174 (44%), Positives = 116/174 (66%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SRIGK+P+E+PS V+ + GQ ++VKGP G S +V + + + + + ++RA
Sbjct: 2 SRIGKKPVELPSGVSAAVSGQTIEVKGPKGARSFTATDDVTITVDGNVVSITPRGMSKRA 61
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
Q G+ RT+ N+V GV++GF+K+L++ GVGYRA +G L L+LG+SH V T+P G+
Sbjct: 62 RQQWGMSRTMVANLVAGVTEGFKKELEITGVGYRANAQGNTLKLNLGYSHDVDFTVPAGV 121
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
V+ + T I V G D+ +G+ AA IR+WR PEPYKGKG++Y E I RK+GK
Sbjct: 122 TVSTPKQTEIVVEGIDQQQVGEVAAKIREWRSPEPYKGKGIRYKGEFIFRKDGK 175
>UNIPROTKB|Q9KNZ9 [details] [associations]
symbol:rplF "50S ribosomal protein L6" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 PIR:G82057 RefSeq:NP_232209.1
ProteinModelPortal:Q9KNZ9 SMR:Q9KNZ9 DNASU:2615598 GeneID:2615598
KEGG:vch:VC2581 PATRIC:20084188 Uniprot:Q9KNZ9
Length = 177
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 80/174 (45%), Positives = 109/174 (62%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SR+ K P+ +P+ V + L GQ++ +KG GEL+ V+ V + +ED+ L A
Sbjct: 2 SRVAKAPVAIPAGVEVKLNGQEITIKGAKGELTRVFHNGVVIAQEDNQLTFGPREGVANA 61
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
G R L NMVVGV++GF KKL + GVGYRAA++G + L+LGFSHPV +P G+
Sbjct: 62 WAQAGTARALVKNMVVGVTEGFTKKLVLKGVGYRAAMKGNAVGLTLGFSHPVEHELPAGV 121
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
K T I ++G DK +GQ AA IR +R PEPYKGKG++Y DE +R KE K
Sbjct: 122 KAECPSQTEIVLTGCDKQVVGQVAADIRSYRAPEPYKGKGIRYADENVRSKEAK 175
>TIGR_CMR|VC_2581 [details] [associations]
symbol:VC_2581 "ribosomal protein L6" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
eggNOG:COG0097 KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 TIGRFAMs:TIGR03654
ProtClustDB:PRK05498 HAMAP:MF_01365_B PANTHER:PTHR11655:SF6
PIR:G82057 RefSeq:NP_232209.1 ProteinModelPortal:Q9KNZ9 SMR:Q9KNZ9
DNASU:2615598 GeneID:2615598 KEGG:vch:VC2581 PATRIC:20084188
Uniprot:Q9KNZ9
Length = 177
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 80/174 (45%), Positives = 109/174 (62%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SR+ K P+ +P+ V + L GQ++ +KG GEL+ V+ V + +ED+ L A
Sbjct: 2 SRVAKAPVAIPAGVEVKLNGQEITIKGAKGELTRVFHNGVVIAQEDNQLTFGPREGVANA 61
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
G R L NMVVGV++GF KKL + GVGYRAA++G + L+LGFSHPV +P G+
Sbjct: 62 WAQAGTARALVKNMVVGVTEGFTKKLVLKGVGYRAAMKGNAVGLTLGFSHPVEHELPAGV 121
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
K T I ++G DK +GQ AA IR +R PEPYKGKG++Y DE +R KE K
Sbjct: 122 KAECPSQTEIVLTGCDKQVVGQVAADIRSYRAPEPYKGKGIRYADENVRSKEAK 175
>TIGR_CMR|CBU_0253 [details] [associations]
symbol:CBU_0253 "ribosomal protein L6" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:NP_819297.1
ProteinModelPortal:Q83ER1 SMR:Q83ER1 GeneID:1208134
KEGG:cbu:CBU_0253 PATRIC:17929199
BioCyc:CBUR227377:GJ7S-259-MONOMER Uniprot:Q83ER1
Length = 178
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 81/174 (46%), Positives = 112/174 (64%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SR+ K PI++P+ V + + GQ + VKG LG L+ V R VKV + D+ L+ ++ +
Sbjct: 3 SRVAKNPIKIPTGVEVNVAGQQITVKGKLGTLTRVIHRAVKVTKTDAELQTICANDSPGS 62
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
N + G R + NMV GV GF++KL MVGVGYRA EG+ L L++G SHPV + +P+GI
Sbjct: 63 NALAGTARAVLANMVQGVHTGFQRKLVMVGVGYRAKAEGKKLNLTVGLSHPVNIEMPEGI 122
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
V T I V G DK + Q AA+IR+ RPPEPYKGKG++Y +E + KE K
Sbjct: 123 TVETPSQTEIIVKGADKQRVSQVAANIREIRPPEPYKGKGIRYDNERVILKEAK 176
>TIGR_CMR|DET_0489 [details] [associations]
symbol:DET_0489 "ribosomal protein L6" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0015934 "large ribosomal
subunit" evidence=ISS] InterPro:IPR000702 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0019843
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 RefSeq:YP_181233.1 HSSP:P32969
ProteinModelPortal:Q3Z966 STRING:Q3Z966 GeneID:3230241
KEGG:det:DET0489 PATRIC:21608047 BioCyc:DETH243164:GJNF-489-MONOMER
Uniprot:Q3Z966
Length = 182
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 80/178 (44%), Positives = 111/178 (62%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SRIGK PI+VP VT+ + G D+ VKGP G L+ + EV + R+ +L V + A
Sbjct: 2 SRIGKMPIKVPPGVTVDIKGNDVTVKGPKGTLNRTFRPEVTITRDGDYLVVAPVGTDKAA 61
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
GL RTL DNM+VGV GF+K L++VGVG RA +G ++ +G+SH V + P GI
Sbjct: 62 RSFFGLSRTLLDNMIVGVKDGFDKNLEIVGVGMRADKDGNNIIFKVGYSHTVTVAPPAGI 121
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKA-GK 223
++V+ T++ VSG +K + Q AA IR R P+ Y GKG++Y E +R K GKA GK
Sbjct: 122 TLSVDGTTKVKVSGINKEEVSQMAAEIRSIRKPDHYMGKGIRYAGEYVRIKPGKAIGK 179
>TIGR_CMR|SO_0246 [details] [associations]
symbol:SO_0246 "ribosomal protein L6" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:NP_715886.1
ProteinModelPortal:Q8EK54 SMR:Q8EK54 GeneID:1168129
KEGG:son:SO_0246 PATRIC:23520185 Uniprot:Q8EK54
Length = 177
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 84/174 (48%), Positives = 107/174 (61%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SR+ K P+ +P+ V +TL Q L VKG G L+ V V V E+ ++ A
Sbjct: 2 SRVAKAPVSIPAGVEVTLNEQTLTVKGAKGSLTRVINNAVNVVIENGVIKFLPVEGAVGA 61
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
G R L +NMVVGVS+GFE+KL++VGVGYRA L G + L+LGFSHP+ +P G+
Sbjct: 62 WAQAGTTRALVNNMVVGVSQGFERKLKLVGVGYRAKLVGADIDLTLGFSHPLVHKLPAGV 121
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
T I + G DK IGQ AA IR +RPPEPYKGKGV+Y DE +RRKE K
Sbjct: 122 TAECPSQTDIVLRGVDKQLIGQVAAEIRGYRPPEPYKGKGVRYDDEEVRRKEAK 175
>UNIPROTKB|P0AG55 [details] [associations]
symbol:rplF "50S ribosomal subunit protein L6"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019843 "rRNA
binding" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
EMBL:X01563 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0046677 EMBL:U18997
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 PDB:2VHM PDBsum:2VHM
PDB:2RDO PDBsum:2RDO eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12
PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y
PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS
PDB:1EG0 PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4
PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L
PDB:2Z4N PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R
PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19
PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR
PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:487D PDB:4GAR
PDB:4GAU PDBsum:1EG0 PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6
PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA
PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM
PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG
PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ
PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N
PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P
PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT
PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS
PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR
PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T
PDBsum:487D PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
ProtClustDB:PRK05498 HAMAP:MF_01365_B PANTHER:PTHR11655:SF6
PIR:D65123 RefSeq:NP_417764.1 RefSeq:YP_492127.1
ProteinModelPortal:P0AG55 SMR:P0AG55 DIP:DIP-35860N IntAct:P0AG55
MINT:MINT-1244940 PaxDb:P0AG55 PRIDE:P0AG55
EnsemblBacteria:EBESCT00000002485 EnsemblBacteria:EBESCT00000014824
GeneID:12934434 GeneID:947803 KEGG:ecj:Y75_p3871 KEGG:eco:b3305
PATRIC:32122042 EchoBASE:EB0862 EcoGene:EG10869
BioCyc:EcoCyc:EG10869-MONOMER BioCyc:ECOL316407:JW3267-MONOMER
EvolutionaryTrace:P0AG55 Genevestigator:P0AG55 Uniprot:P0AG55
Length = 177
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 82/174 (47%), Positives = 107/174 (61%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SR+ K P+ VP+ V + + GQ + +KG GEL+ V+V D+ L
Sbjct: 2 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADG 61
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
G R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ LSLGFSHPV +P GI
Sbjct: 62 WAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGI 121
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
T I + G DK IGQ AA +R +R PEPYKGKGV+Y DEV+R KE K
Sbjct: 122 TAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAK 175
>TIGR_CMR|ECH_0424 [details] [associations]
symbol:ECH_0424 "ribosomal protein L6" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR000702 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 PANTHER:PTHR11655:SF6
RefSeq:YP_507242.1 ProteinModelPortal:Q2GH41 STRING:Q2GH41
GeneID:3928038 KEGG:ech:ECH_0424 PATRIC:20576325
BioCyc:ECHA205920:GJNR-425-MONOMER Uniprot:Q2GH41
Length = 178
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 66/179 (36%), Positives = 97/179 (54%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SR+G PI +PSNV L G L +K L L V D D + + ++ ++
Sbjct: 2 SRVGSMPIAIPSNVQADLVGNQLILKNNENSLKLTLDYGVLCDITDGKIVLHVNDKSIKS 61
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
M G +R++ +N +G+S+G +L++ GVGY+A + G+ L LSLGFSH V+ IP GI
Sbjct: 62 RVMWGTYRSIINNYAIGLSQGLVVELEVNGVGYKAEVNGEYLSLSLGFSHGVKYKIPTGI 121
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK 225
+ + T+I V G+DK + A+ I R PYKGKG+ + RKE KKK
Sbjct: 122 VIQCVKPTQILVKGFDKQKVYMVASDICSIRKYNPYKGKGISIKGRYVHRKE--VNKKK 178
>POMBASE|SPAC12G12.08 [details] [associations]
symbol:mrpl6 "mitochondrial ribosomal protein subunit
L16 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
PomBase:SPAC12G12.08 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005762 GO:GO:0003735 GO:GO:0032543
GO:GO:0019843 eggNOG:COG0097 Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 PIR:S62539 RefSeq:NP_592890.1
ProteinModelPortal:Q09865 STRING:Q09865 EnsemblFungi:SPAC12G12.08.1
GeneID:2542846 KEGG:spo:SPAC12G12.08 HOGENOM:HOG000039904
OMA:KRRPEPY OrthoDB:EOG4RZ28K NextBio:20803887 Uniprot:Q09865
Length = 213
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 60/185 (32%), Positives = 106/185 (57%)
Query: 32 VNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDRE 91
+ R+G + T S +GK+ I VP N+ L G+ L++ GP G L++ +P + + +
Sbjct: 17 IARLGMNFTTCSAARSYVGKKEIIVPKNIQFDLEGEQLQITGPHGTLNMRFPNYLNLSKT 76
Query: 92 DSFLRVRK--TVE---TRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQ 146
+ L+V +E T++ M G R + N V GV+ ++ +++VG+GYR +L
Sbjct: 77 NDILKVGMDANIEKQATKKQRAMWGTTRAILANNVKGVTMYWQSIIKLVGIGYRTSLNDG 136
Query: 147 VLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKG 206
+ L +G+++ + ++IP ++V T + + G D+ + QFAA IR ++ PEPYKGKG
Sbjct: 137 NIHLKIGYANDILVSIPTDVQVENPTPTSLVLRGIDRQKVTQFAAKIRSFKKPEPYKGKG 196
Query: 207 VKYVD 211
+ YVD
Sbjct: 197 I-YVD 200
>ASPGD|ASPL0000044544 [details] [associations]
symbol:AN1770 species:162425 "Emericella nidulans"
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PRINTS:PR00059 PROSITE:PS00525
GO:GO:0006412 EMBL:BN001307 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AACD01000028 eggNOG:COG0097 Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 HOGENOM:HOG000039904
OrthoDB:EOG4RZ28K OMA:MWGTVRS RefSeq:XP_659374.1
ProteinModelPortal:Q5BCG0 STRING:Q5BCG0
EnsemblFungi:CADANIAT00008416 GeneID:2875587 KEGG:ani:AN1770.2
Uniprot:Q5BCG0
Length = 251
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 65/167 (38%), Positives = 93/167 (55%)
Query: 69 LKVKGPLGELSLVYPREVKVDREDSFLRVRKTVE---TRRANQMHGLFRTLTDNMVVGVS 125
++V GPLG+L+L P V + +++ + TV M G R N ++GVS
Sbjct: 83 VEVNGPLGQLTLNIPSFVNIAHDENLRKASLTVADPAVPHQRAMWGTTRAHLQNYILGVS 142
Query: 126 KGFEKKLQMVGVGYRAALE-----------GQVLV-LSLGFSHPVRMTIPDGIKVNVEEN 173
+G L +VGVGYRA++E GQ V L G+SHP+ + IP+G++ + +
Sbjct: 143 EGHICILSLVGVGYRASIEPTATTVEPEYPGQQFVSLKAGYSHPIELGIPEGVQASTPQP 202
Query: 174 TRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
TRI + G DK + QFAA IR+WR PEPYKGKG+ E I+ K K
Sbjct: 203 TRILLQGSDKQVVTQFAAEIREWRKPEPYKGKGIFINGETIKLKAKK 249
>SGD|S000001190 [details] [associations]
symbol:MRPL6 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0003735
"structural constituent of ribosome" evidence=IEA;IDA;IPI]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0032543 "mitochondrial
translation" evidence=IC] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=IDA;IPI] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
SGD:S000001190 EMBL:BK006934 GO:GO:0005762 GO:GO:0003735
GO:GO:0032543 GO:GO:0019843 EMBL:U10397 EMBL:X69480 eggNOG:COG0097
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
HOGENOM:HOG000039904 OrthoDB:EOG4RZ28K PIR:S46764
RefSeq:NP_012017.1 ProteinModelPortal:P32904 SMR:P32904
DIP:DIP-5622N IntAct:P32904 MINT:MINT-503396 STRING:P32904
PaxDb:P32904 EnsemblFungi:YHR147C GeneID:856552 KEGG:sce:YHR147C
CYGD:YHR147c OMA:MWGTVRS NextBio:982360 Genevestigator:P32904
GermOnline:YHR147C Uniprot:P32904
Length = 214
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 60/159 (37%), Positives = 94/159 (59%)
Query: 67 QDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTV---ETRRANQMHGLFRTLTDNMVVG 123
Q++ VKGP GELS+ P + +D+++ ++ TV E + M G R+L +N ++G
Sbjct: 54 QNITVKGPKGELSVEVPDFLHLDKDEKHGKINVTVQNSEDKHQRSMWGTVRSLINNHIIG 113
Query: 124 VSKGFEKKLQMVGVGYRAALE--GQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGY 181
V++G L+ VG GYRA LE G+ + + +G S + +P+GI V T + + G
Sbjct: 114 VTEGHLAVLRFVGTGYRAQLENDGKFVNVKVGASIKQGLDVPEGIVVKTPAPTSLIIEGC 173
Query: 182 DKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
+K + FAA +RK+ PPEPYKGKG+ DE I+ K+ K
Sbjct: 174 NKQQVLLFAAKLRKFHPPEPYKGKGIYVNDETIKLKDKK 212
>TIGR_CMR|APH_0295 [details] [associations]
symbol:APH_0295 "ribosomal protein L6" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000702
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 PANTHER:PTHR11655:SF6
RefSeq:YP_504907.1 ProteinModelPortal:Q2GL44 STRING:Q2GL44
GeneID:3929992 KEGG:aph:APH_0295 PATRIC:20949164
BioCyc:APHA212042:GHPM-325-MONOMER Uniprot:Q2GL44
Length = 180
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 63/182 (34%), Positives = 101/182 (55%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKV---KGPLGELSLVYPREVKVDREDSFLRVRKTVET 103
SR+G PIE+P V +++ + V KG SL + + +D + L V + +
Sbjct: 2 SRVGAMPIEIPEGVQVSVDESGVTVSDAKGRTSTFSLSHGIKAVLDGKMLML-VNENKHS 60
Query: 104 RRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIP 163
+A M G +R+ +N + G++ GF + ++ GVGY+ +G+ L +SLGFSH V+ IP
Sbjct: 61 TKAKVMWGSYRSNINNAIRGMASGFLVEFEVNGVGYKVVHQGECLSISLGFSHSVKYVIP 120
Query: 164 DGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGK 223
+GI+V + T+ T+SG DK + AA + R +PYKGKG+ + + RKE K
Sbjct: 121 EGIEVKCTKPTQFTISGSDKIKVHMVAADLCSIRRYDPYKGKGIFVKGKYVYRKE--VSK 178
Query: 224 KK 225
KK
Sbjct: 179 KK 180
>TAIR|locus:2062200 [details] [associations]
symbol:AT2G18400 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PRINTS:PR00059 PROSITE:PS00525 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AC006439 UniGene:At.13887 UniGene:At.63473
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 HSSP:P02391 EMBL:AY044317
EMBL:AY088468 IPI:IPI00522811 PIR:H84563 RefSeq:NP_565438.1
ProteinModelPortal:Q9ZPX2 SMR:Q9ZPX2 STRING:Q9ZPX2 PaxDb:Q9ZPX2
PRIDE:Q9ZPX2 EnsemblPlants:AT2G18400.1 GeneID:816355
KEGG:ath:AT2G18400 TAIR:At2g18400 InParanoid:Q9ZPX2 OMA:GYSHEVQ
PhylomeDB:Q9ZPX2 ProtClustDB:CLSN2688231 ArrayExpress:Q9ZPX2
Genevestigator:Q9ZPX2 Uniprot:Q9ZPX2
Length = 102
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 45/98 (45%), Positives = 67/98 (68%)
Query: 128 FEKKLQMVGVGYRAALE--GQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSA 185
F + L++VGVGY+A E G+ L L LG+SH V + +P ++V +N + +G DK
Sbjct: 5 FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64
Query: 186 IGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGK 223
+ QFAA++R +PPEPYKGKG+ Y DEV+++K+GK K
Sbjct: 65 VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102
>TIGR_CMR|NSE_0281 [details] [associations]
symbol:NSE_0281 "ribosomal protein L6" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR000702 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
ProtClustDB:PRK05498 PANTHER:PTHR11655:SF6 RefSeq:YP_506172.1
ProteinModelPortal:Q2GEC4 STRING:Q2GEC4 GeneID:3931705
KEGG:nse:NSE_0281 PATRIC:22680655 OMA:CEVSAGR
BioCyc:NSEN222891:GHFU-308-MONOMER Uniprot:Q2GEC4
Length = 176
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 53/174 (30%), Positives = 95/174 (54%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SR+G+ I++ S + + V+ GE+S+ + + E S R++ + E
Sbjct: 2 SRVGESSIDI-SGLDCSFERSTGVVRFSSGEVSVSHSLPGGIFCEVSAGRIQLSAEDDSM 60
Query: 107 NQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
+ + GL R+L +N+ G+ K F+++L + GVGY+A + G+ L+L LG++H ++ I D +
Sbjct: 61 SMLLGLHRSLLNNIACGLRKKFQRRLVLNGVGYKAEVRGRYLILYLGYTHNIKYFIFDAV 120
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
+ + T + V DK +G + + R +PYKGKG+ D V+ RKE K
Sbjct: 121 SITAVKPTELLVESSDKHVLGLVVSDLCSLRRYDPYKGKGIFPSDVVMPRKEAK 174
>CGD|CAL0005711 [details] [associations]
symbol:MRPL6 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347 PRINTS:PR00059
PROSITE:PS00525 CGD:CAL0005711 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 EMBL:AACQ01000039 eggNOG:COG0097
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
RefSeq:XP_718643.1 ProteinModelPortal:Q5AAK3 STRING:Q5AAK3
GeneID:3639724 KEGG:cal:CaO19.7486 Uniprot:Q5AAK3
Length = 233
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 56/174 (32%), Positives = 91/174 (52%)
Query: 59 NVTITLGGQDLKVKGPLGELSLVYPREVKV------DREDSFLRVRKTVETRRANQMHGL 112
N T L Q + GPLG+L + P + + + + S + K E + + G
Sbjct: 59 NKTFILDRQII-TSGPLGKLRVEIPEFINISENNTNENDKSIIVSVKKPENKIQRSLWGT 117
Query: 113 FRTLTDNMVVGVSKGFEKKLQMVGVGYRAALE-----GQ-VLVLSLGFSHPVRMTIPDGI 166
+R++ N ++G+++G ++ VG GYRA LE G+ ++ L +G ++ IP G+
Sbjct: 118 YRSILYNNIIGITEGHLSIVKFVGTGYRAILEKDPQTGEDIISLKIGLPFTPKLKIPKGL 177
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
KV+ R+ + G DK + FAA IR+ + PEPYKGKG+ DE I K+ K
Sbjct: 178 KVSSPNPARLVIEGSDKQQVKLFAAFIREHKKPEPYKGKGIFVDDEKIVLKQRK 231
>DICTYBASE|DDB_G0294038 [details] [associations]
symbol:mrpl6 "ribosomal protein L6, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000702 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
dictyBase:DDB_G0294038 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AB000109 GenomeReviews:AB000109_GR GO:GO:0019843
EMBL:D63523 eggNOG:COG0097 Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 PIR:T43779 RefSeq:NP_050100.1
ProteinModelPortal:O21037 STRING:O21037 GeneID:2193925
KEGG:ddi:DidioMp33 Uniprot:O21037
Length = 170
Score = 143 (55.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 36/114 (31%), Positives = 62/114 (54%)
Query: 110 HGLFRTLTDNM---VVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGI 166
HG R + M + GV GF +L++VG+G+ G LVL +G+SH IP +
Sbjct: 56 HGDSRIIIGTMKQQIQGVLAGFCIELKLVGLGFVVHKVGNTLVLDVGYSHYRSCLIPKEV 115
Query: 167 KVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
V +E ++I + +K + FA+ ++ ++ YKG G+ ++E I+ K+GK
Sbjct: 116 VVKLE-GSQIILYSINKEKVTTFASLLKTFKKINMYKGTGILGINEKIKLKKGK 168
Score = 38 (18.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 38 SRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVY 82
S T E E +I + +++ S+ + + ++LK+K P + + +Y
Sbjct: 8 SLNTFEI-EYKIANKSVKIKSSGKMGVITKELKLKEPAIQSNNIY 51
>DICTYBASE|DDB_G0278959 [details] [associations]
symbol:rpl9 "60S ribosomal protein L9" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000702
InterPro:IPR002359 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PROSITE:PS00700 dictyBase:DDB_G0278959
GO:GO:0045335 GenomeReviews:CM000152_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AAFI02000024 GO:GO:0019843 eggNOG:COG0097
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053 HSSP:P32969
OMA:AVRTVCS RefSeq:XP_647818.2 ProteinModelPortal:Q54XI5
STRING:Q54XI5 PRIDE:Q54XI5 EnsemblProtists:DDB0231259
GeneID:8621778 KEGG:ddi:DDB_G0278959 Uniprot:Q54XI5
Length = 188
Score = 123 (48.4 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 47/172 (27%), Positives = 84/172 (48%)
Query: 54 IEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMH-GL 112
+++P NVT+ + G+ +KV GP G LS + VD + + TV+ N+
Sbjct: 10 VQIPENVTVDVKGRSVKVTGPRGTLSKSFDH-ASVDI-NLVGKKELTVDLWFGNRKQIAC 67
Query: 113 FRTLT---DNMVVGVSKGFEKKLQMVGVGY--RAALE--GQVLVLSLGFSHPV--RMTIP 163
+T+T +NM+ GV+KG+E K++ V + A+ G+V+ + F + R+ +
Sbjct: 68 IKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELL 127
Query: 164 DGIKV--NVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEV 213
DGI N + I ++G + Q A+I+ R YK K++D +
Sbjct: 128 DGITCYRNEKAKDEIVLTGNSLELLSQSCATIQL-RSAIKYKDVR-KFLDGI 177
>SGD|S000003115 [details] [associations]
symbol:RPL9A "Ribosomal 60S subunit protein L9A" species:4932
"Saccharomyces cerevisiae" [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;IDA] [GO:0002181 "cytoplasmic translation"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000702 InterPro:IPR002359
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PROSITE:PS00700
SGD:S000003115 EMBL:BK006941 GO:GO:0003735 GO:GO:0002181
GO:GO:0019843 EMBL:X60190 EMBL:X99960 PDB:4B6A PDBsum:4B6A PDB:3J16
PDBsum:3J16 GO:GO:0022625 RefSeq:NP_011368.3 GeneID:852730
KEGG:sce:YGL147C KO:K02940 KO:K02835 RefSeq:NP_011372.3
GeneID:852734 KEGG:sce:YGL143C Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 PDB:1K5Y PDB:1S1I PDB:3IZS PDB:3O58 PDB:3O5H
PDB:3U5E PDB:3U5I PDBsum:1K5Y PDBsum:1S1I PDBsum:3IZS PDBsum:3O58
PDBsum:3O5H PDBsum:3U5E PDBsum:3U5I HOGENOM:HOG000039905
OMA:RDTRIFQ OrthoDB:EOG4RJK9X EMBL:Z72669 PIR:S19077
ProteinModelPortal:P05738 SMR:P05738 DIP:DIP-4826N IntAct:P05738
MINT:MINT-493534 STRING:P05738 PeptideAtlas:P05738
EnsemblFungi:YGL147C CYGD:YGL147c GeneTree:ENSGT00390000015224
EvolutionaryTrace:P05738 NextBio:972123 Genevestigator:P05738
GermOnline:YGL147C Uniprot:P05738
Length = 191
Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
Identities = 39/158 (24%), Positives = 76/158 (48%)
Query: 51 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDREDSFLRVRKTVETRRANQM 109
+Q IEVP VT+++ + +KV GP G L+ +V + ++ L ++ V +
Sbjct: 7 EQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQL-IKVAVHNGGRKHV 65
Query: 110 HGL--FRTLTDNMVVGVSKGFEKKLQMVGVGYRAAL-----EGQVLVLSLGF--SHPVR- 159
L ++L DNM+ GV+KG++ K++ V + + +G + F +R
Sbjct: 66 AALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRN 125
Query: 160 MTIPDGIKVNVEENTR--ITVSGYDKSAIGQFAASIRK 195
+ + DG+ + N + I +SG + Q AA +++
Sbjct: 126 VPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQ 163
>SGD|S000005011 [details] [associations]
symbol:RPL9B "Ribosomal 60S subunit protein L9B" species:4932
"Saccharomyces cerevisiae" [GO:0002181 "cytoplasmic translation"
evidence=IDA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=IDA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000702 InterPro:IPR002359 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PROSITE:PS00700 SGD:S000005011
EMBL:BK006947 GO:GO:0003735 GO:GO:0002181 EMBL:U12141 GO:GO:0019843
EMBL:X86470 EMBL:Z71343 GO:GO:0022625 KO:K02940 eggNOG:COG0097
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
HOGENOM:HOG000039905 OMA:AVRTVCS OrthoDB:EOG4RJK9X
GeneTree:ENSGT00390000015224 EMBL:AY693129 PIR:S53915
RefSeq:NP_014332.1 ProteinModelPortal:P51401 SMR:P51401
IntAct:P51401 MINT:MINT-2732420 STRING:P51401 PaxDb:P51401
PeptideAtlas:P51401 EnsemblFungi:YNL067W GeneID:855658
KEGG:sce:YNL067W CYGD:YNL067w NextBio:979917 Genevestigator:P51401
GermOnline:YNL067W Uniprot:P51401
Length = 191
Score = 109 (43.4 bits), Expect = 0.00021, P = 0.00021
Identities = 38/158 (24%), Positives = 76/158 (48%)
Query: 51 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDREDSFLRVRKTVETRRANQM 109
+Q IE+P VT+++ + +KV GP G L+ +V + ++ L ++ V +
Sbjct: 7 EQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQL-IKVAVHNGDRKHV 65
Query: 110 HGL--FRTLTDNMVVGVSKGFEKKLQMVGVGYRAAL-----EGQVLVLSLGF--SHPVR- 159
L ++L DNM+ GV+KG++ K++ V + + +G + F +R
Sbjct: 66 AALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRN 125
Query: 160 MTIPDGIKVNVEENTR--ITVSGYDKSAIGQFAASIRK 195
+ + DG+ + N + I +SG + Q AA +++
Sbjct: 126 VPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQ 163
>ZFIN|ZDB-GENE-030131-8646 [details] [associations]
symbol:rpl9 "ribosomal protein L9" species:7955
"Danio rerio" [GO:0019843 "rRNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR000702
InterPro:IPR002359 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PROSITE:PS00700 ZFIN:ZDB-GENE-030131-8646
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 KO:K02940
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
HOGENOM:HOG000039905 GeneTree:ENSGT00390000015224 CTD:6133
HOVERGEN:HBG000942 EMBL:CR759875 EMBL:AY648736 IPI:IPI00497811
RefSeq:NP_001003861.1 UniGene:Dr.29079 SMR:Q6DRM3 STRING:Q6DRM3
Ensembl:ENSDART00000054340 GeneID:336702 KEGG:dre:336702
InParanoid:Q6DRM3 NextBio:20811865 Uniprot:Q6DRM3
Length = 193
Score = 108 (43.1 bits), Expect = 0.00029, P = 0.00029
Identities = 43/166 (25%), Positives = 78/166 (46%)
Query: 49 IGKQPIEVPSNVTITLGGQDLKVKGPLG-----------ELSLVYPREVKVDREDSFLRV 97
+ Q +++P NVT++L G+ + VKGP G ELSL+ ++ K+ R D +
Sbjct: 5 LSNQTVDIPDNVTVSLKGRTVTVKGPRGVLRREFNHINLELSLLGKKQKKL-RVDKWWGN 63
Query: 98 RKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGY--RAALE--GQVLVLS-- 151
RK + T R H NM+ GV+ GF K++ V + ++ G ++ +
Sbjct: 64 RKELATVRTICSH------VQNMIKGVTLGFRYKMRSVYAHFPINVVIQESGSLVEIRNF 117
Query: 152 LGFSHPVRMTIPDGIK--VNVEENTRITVSGYDKSAIGQFAASIRK 195
LG + R+ + G+ V+ + + + G D + AA I++
Sbjct: 118 LGEKYIRRVRMRQGVACAVSAAQKDELVLEGNDIELVSNSAALIQQ 163
>UNIPROTKB|E2R149 [details] [associations]
symbol:RPL9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0019843 "rRNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000702 InterPro:IPR002359
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PROSITE:PS00700
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 KO:K02940
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053 OMA:AVRTVCS
GeneTree:ENSGT00390000015224 CTD:6133 EMBL:AAEX03002535
RefSeq:XP_003434445.1 RefSeq:XP_536256.1 ProteinModelPortal:E2R149
SMR:E2R149 PRIDE:E2R149 Ensembl:ENSCAFT00000008062 GeneID:479109
KEGG:cfa:479109 NextBio:20854340 Uniprot:E2R149
Length = 192
Score = 104 (41.7 bits), Expect = 0.00090, P = 0.00090
Identities = 44/185 (23%), Positives = 85/185 (45%)
Query: 49 IGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVD-----REDSFLRVRKTVET 103
+ Q +++P NV ITL G+ + VKGP G L + + V+ ++ LRV K
Sbjct: 5 LSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDF-NHINVELSLLGKKKKRLRVDKWWGN 63
Query: 104 RRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGY--RAALE--GQVLVLS--LGFSHP 157
R+ + NM+ GV+ GF K++ V + ++ G ++ + LG +
Sbjct: 64 RKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYI 123
Query: 158 VRMTIPDGIKVNVEENTR--ITVSGYDKSAIGQFAASIRKWRPPEPYKGKGV-KYVDEVI 214
R+ + G+ +V + + + + G D + AA I++ K K + K++D +
Sbjct: 124 RRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQ---ATTVKNKDIRKFLDGIY 180
Query: 215 RRKEG 219
++G
Sbjct: 181 VSEKG 185
>UNIPROTKB|P32969 [details] [associations]
symbol:RPL9 "60S ribosomal protein L9" species:9606 "Homo
sapiens" [GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412
"translation" evidence=NAS;TAS] [GO:0003735 "structural constituent
of ribosome" evidence=NAS] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005840 "ribosome" evidence=TAS] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006413 "translational initiation" evidence=TAS] [GO:0006414
"translational elongation" evidence=TAS] [GO:0006415 "translational
termination" evidence=TAS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0019058 "viral infectious cycle" evidence=TAS] [GO:0019083
"viral transcription" evidence=TAS] [GO:0044267 "cellular protein
metabolic process" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000702 InterPro:IPR002359 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PROSITE:PS00700
Reactome:REACT_116125 GO:GO:0005730 GO:GO:0000184 GO:GO:0006413
GO:GO:0003723 GO:GO:0003735 GO:GO:0019843 GO:GO:0006415
GO:GO:0006414 Reactome:REACT_1762 GO:GO:0006614 GO:GO:0022625
GO:GO:0019083 KO:K02940 eggNOG:COG0097 Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 HOGENOM:HOG000039905 OMA:AVRTVCS
CTD:6133 HOVERGEN:HBG000942 OrthoDB:EOG4T4CWJ EMBL:D14531
EMBL:U09953 EMBL:U09954 EMBL:U21138 EMBL:AB062431 EMBL:BC000483
EMBL:BC004156 EMBL:BC004206 EMBL:BC007967 EMBL:BC012149
EMBL:BC031906 EMBL:BC066318 EMBL:BC070214 EMBL:AB007169
IPI:IPI00031691 PIR:S65792 RefSeq:NP_000652.2 RefSeq:NP_001020092.1
UniGene:Hs.412370 UniGene:Hs.513083 UniGene:Hs.730597
UniGene:Hs.741045 PDB:2CQL PDBsum:2CQL ProteinModelPortal:P32969
SMR:P32969 IntAct:P32969 MINT:MINT-5000985 STRING:P32969
PhosphoSite:P32969 DMDM:417677 SWISS-2DPAGE:P32969 PaxDb:P32969
PeptideAtlas:P32969 PRIDE:P32969 DNASU:6133 Ensembl:ENST00000295955
Ensembl:ENST00000449470 GeneID:6133 KEGG:hsa:6133 UCSC:uc003gub.3
HGNC:HGNC:10369 HPA:HPA003372 MIM:603686 neXtProt:NX_P32969
PharmGKB:PA34769 InParanoid:P32969 PhylomeDB:P32969
EvolutionaryTrace:P32969 GenomeRNAi:6133 NextBio:23821
ArrayExpress:P32969 Bgee:P32969 CleanEx:HS_RPL9
Genevestigator:P32969 GermOnline:ENSG00000163682
GermOnline:ENSG00000169653 GermOnline:ENSG00000182754
GermOnline:ENSG00000185078 Uniprot:P32969
Length = 192
Score = 104 (41.7 bits), Expect = 0.00090, P = 0.00090
Identities = 44/185 (23%), Positives = 85/185 (45%)
Query: 49 IGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVD-----REDSFLRVRKTVET 103
+ Q +++P NV ITL G+ + VKGP G L + + V+ ++ LRV K
Sbjct: 5 LSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDF-NHINVELSLLGKKKKRLRVDKWWGN 63
Query: 104 RRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGY--RAALE--GQVLVLS--LGFSHP 157
R+ + NM+ GV+ GF K++ V + ++ G ++ + LG +
Sbjct: 64 RKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYI 123
Query: 158 VRMTIPDGIKVNVEENTR--ITVSGYDKSAIGQFAASIRKWRPPEPYKGKGV-KYVDEVI 214
R+ + G+ +V + + + + G D + AA I++ K K + K++D +
Sbjct: 124 RRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQ---ATTVKNKDIRKFLDGIY 180
Query: 215 RRKEG 219
++G
Sbjct: 181 VSEKG 185
>UNIPROTKB|I3LP78 [details] [associations]
symbol:RPL9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000702 InterPro:IPR002359
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PROSITE:PS00700
GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 GO:GO:0019843
GO:GO:0022625 KO:K02940 Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 OMA:AVRTVCS GeneTree:ENSGT00390000015224 CTD:6133
EMBL:FP312767 RefSeq:NP_001230410.1 UniGene:Ssc.26752
ProteinModelPortal:I3LP78 SMR:I3LP78 PRIDE:I3LP78
Ensembl:ENSSSCT00000026428 GeneID:100627537 KEGG:ssc:100627537
Uniprot:I3LP78
Length = 192
Score = 104 (41.7 bits), Expect = 0.00090, P = 0.00090
Identities = 44/185 (23%), Positives = 85/185 (45%)
Query: 49 IGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVD-----REDSFLRVRKTVET 103
+ Q +++P NV ITL G+ + VKGP G L + + V+ ++ LRV K
Sbjct: 5 LSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDF-NHINVELSLLGKKKKRLRVDKWWGN 63
Query: 104 RRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGY--RAALE--GQVLVLS--LGFSHP 157
R+ + NM+ GV+ GF K++ V + ++ G ++ + LG +
Sbjct: 64 RKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYI 123
Query: 158 VRMTIPDGIKVNVEENTR--ITVSGYDKSAIGQFAASIRKWRPPEPYKGKGV-KYVDEVI 214
R+ + G+ +V + + + + G D + AA I++ K K + K++D +
Sbjct: 124 RRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQ---ATTVKNKDIRKFLDGIY 180
Query: 215 RRKEG 219
++G
Sbjct: 181 VSEKG 185
>MGI|MGI:1298373 [details] [associations]
symbol:Rpl9 "ribosomal protein L9" species:10090 "Mus
musculus" [GO:0003735 "structural constituent of ribosome"
evidence=IC] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IC]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO;IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000702
InterPro:IPR002359 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PROSITE:PS00700 MGI:MGI:1298373 GO:GO:0006412
GO:GO:0003735 GO:GO:0019843 GO:GO:0022625 KO:K02940 eggNOG:COG0097
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
HOGENOM:HOG000039905 OMA:AVRTVCS CTD:6133 HOVERGEN:HBG000942
OrthoDB:EOG4T4CWJ EMBL:AF260271 EMBL:AK012331 EMBL:AK012445
EMBL:AK017388 EMBL:AK017427 EMBL:AK084278 EMBL:BC013165
EMBL:BC081435 EMBL:BC083166 EMBL:BC083329 EMBL:U17332 EMBL:U17331
IPI:IPI00122413 RefSeq:NP_035422.1 UniGene:Mm.300271
UniGene:Mm.383918 UniGene:Mm.422908 ProteinModelPortal:P51410
SMR:P51410 STRING:P51410 PhosphoSite:P51410 PaxDb:P51410
PRIDE:P51410 Ensembl:ENSMUST00000057885 Ensembl:ENSMUST00000120094
GeneID:20005 KEGG:mmu:20005 InParanoid:P51410 NextBio:297507
Bgee:P51410 CleanEx:MM_RPL9 Genevestigator:P51410
GermOnline:ENSMUSG00000071269 Uniprot:P51410
Length = 192
Score = 104 (41.7 bits), Expect = 0.00090, P = 0.00090
Identities = 44/185 (23%), Positives = 85/185 (45%)
Query: 49 IGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVD-----REDSFLRVRKTVET 103
+ Q +++P NV ITL G+ + VKGP G L + + V+ ++ LRV K
Sbjct: 5 LSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDF-NHINVELSLLGKKKKRLRVDKWWGN 63
Query: 104 RRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGY--RAALE--GQVLVLS--LGFSHP 157
R+ + NM+ GV+ GF K++ V + ++ G ++ + LG +
Sbjct: 64 RKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYI 123
Query: 158 VRMTIPDGIKVNVEENTR--ITVSGYDKSAIGQFAASIRKWRPPEPYKGKGV-KYVDEVI 214
R+ + G+ +V + + + + G D + AA I++ K K + K++D +
Sbjct: 124 RRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQ---ATTVKNKDIRKFLDGIY 180
Query: 215 RRKEG 219
++G
Sbjct: 181 VSEKG 185
>RGD|62049 [details] [associations]
symbol:Rpl9 "ribosomal protein L9" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=ISO] InterPro:IPR000702 InterPro:IPR002359
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PROSITE:PS00700
RGD:62049 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
KO:K02940 eggNOG:COG0097 Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 HOGENOM:HOG000039905 OMA:AVRTVCS
GeneTree:ENSGT00390000015224 CTD:6133 HOVERGEN:HBG000942
OrthoDB:EOG4T4CWJ EMBL:X51706 EMBL:BC086561 IPI:IPI00515778
PIR:JH0222 RefSeq:NP_001007599.3 RefSeq:XP_002725578.1
RefSeq:XP_002729193.1 RefSeq:XP_003748822.1 RefSeq:XP_003753735.1
UniGene:Rn.107914 UniGene:Rn.201359 ProteinModelPortal:P17077
SMR:P17077 IntAct:P17077 STRING:P17077 PhosphoSite:P17077
PRIDE:P17077 Ensembl:ENSRNOT00000038927 Ensembl:ENSRNOT00000042201
GeneID:100360449 GeneID:100364457 GeneID:29257 KEGG:rno:100360449
KEGG:rno:100364457 KEGG:rno:29257 UCSC:RGD:62049 InParanoid:P17077
NextBio:608568 Genevestigator:P17077 GermOnline:ENSRNOG00000026716
GermOnline:ENSRNOG00000030476 Uniprot:P17077
Length = 192
Score = 104 (41.7 bits), Expect = 0.00090, P = 0.00090
Identities = 44/185 (23%), Positives = 85/185 (45%)
Query: 49 IGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVD-----REDSFLRVRKTVET 103
+ Q +++P NV ITL G+ + VKGP G L + + V+ ++ LRV K
Sbjct: 5 LSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDF-NHINVELSLLGKKKKRLRVDKWWGN 63
Query: 104 RRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGY--RAALE--GQVLVLS--LGFSHP 157
R+ + NM+ GV+ GF K++ V + ++ G ++ + LG +
Sbjct: 64 RKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYI 123
Query: 158 VRMTIPDGIKVNVEENTR--ITVSGYDKSAIGQFAASIRKWRPPEPYKGKGV-KYVDEVI 214
R+ + G+ +V + + + + G D + AA I++ K K + K++D +
Sbjct: 124 RRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQ---ATTVKNKDIRKFLDGIY 180
Query: 215 RRKEG 219
++G
Sbjct: 181 VSEKG 185
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 225 225 0.00077 113 3 11 22 0.42 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 584 (62 KB)
Total size of DFA: 149 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.12u 0.10s 18.22t Elapsed: 00:00:01
Total cpu time: 18.13u 0.10s 18.23t Elapsed: 00:00:01
Start: Fri May 10 09:10:48 2013 End: Fri May 10 09:10:49 2013