Query 027306
Match_columns 225
No_of_seqs 154 out of 1083
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00140 rpl6 ribosomal protei 100.0 1.9E-69 4.1E-74 455.8 24.4 178 46-223 1-178 (178)
2 PRK05498 rplF 50S ribosomal pr 100.0 3.2E-67 7E-72 442.2 24.9 178 46-223 1-178 (178)
3 TIGR03654 L6_bact ribosomal pr 100.0 1.1E-66 2.3E-71 438.0 24.5 175 47-221 1-175 (175)
4 COG0097 RplF Ribosomal protein 100.0 1.3E-65 2.8E-70 430.0 22.1 177 46-223 1-178 (178)
5 KOG3254 Mitochondrial/chloropl 100.0 6.1E-61 1.3E-65 399.4 15.0 208 1-223 1-211 (211)
6 PRK05518 rpl6p 50S ribosomal p 100.0 5.9E-49 1.3E-53 331.7 20.3 154 51-208 7-165 (180)
7 TIGR03653 arch_L6P archaeal ri 100.0 1.2E-48 2.5E-53 327.3 21.1 148 51-199 1-153 (170)
8 PTZ00179 60S ribosomal protein 100.0 3E-47 6.6E-52 323.5 20.1 165 50-217 5-182 (189)
9 PTZ00027 60S ribosomal protein 100.0 4.9E-47 1.1E-51 322.4 20.7 155 51-208 7-172 (190)
10 PF00347 Ribosomal_L6: Ribosom 99.8 2.1E-18 4.5E-23 125.5 8.3 72 56-127 1-77 (77)
11 KOG3255 60S ribosomal protein 99.7 2.2E-17 4.7E-22 139.2 1.5 142 51-192 7-160 (179)
12 PF00347 Ribosomal_L6: Ribosom 98.6 7.9E-09 1.7E-13 74.9 -0.1 71 136-209 2-76 (77)
13 cd06479 ACD_HspB7_like Alpha c 73.3 5.9 0.00013 29.2 3.9 42 57-98 21-78 (81)
14 cd00298 ACD_sHsps_p23-like Thi 65.2 22 0.00048 23.6 5.3 42 57-98 19-77 (80)
15 PF00011 HSP20: Hsp20/alpha cr 62.6 26 0.00055 25.8 5.6 45 57-101 20-87 (102)
16 cd06481 ACD_HspB9_like Alpha c 61.9 15 0.00032 27.2 4.1 19 57-75 20-38 (87)
17 cd06470 ACD_IbpA-B_like Alpha- 57.6 25 0.00053 25.9 4.7 18 57-74 24-41 (90)
18 cd06497 ACD_alphaA-crystallin_ 55.8 31 0.00068 25.4 5.0 19 57-75 23-41 (86)
19 cd02393 PNPase_KH Polynucleoti 53.9 31 0.00067 23.7 4.4 29 165-193 32-60 (61)
20 COG0097 RplF Ribosomal protein 50.5 17 0.00036 31.1 3.1 25 54-78 115-140 (178)
21 cd06469 p23_DYX1C1_like p23_li 50.0 84 0.0018 21.8 6.7 44 57-100 19-67 (78)
22 cd06471 ACD_LpsHSP_like Group 49.6 55 0.0012 23.8 5.5 19 57-75 23-41 (93)
23 PF12970 DUF3858: Domain of Un 48.1 63 0.0014 25.8 5.7 61 52-118 41-104 (116)
24 TIGR03653 arch_L6P archaeal ri 45.4 1.8E+02 0.004 24.3 9.3 57 61-122 93-152 (170)
25 cd06464 ACD_sHsps-like Alpha-c 44.6 82 0.0018 21.9 5.6 20 57-76 20-39 (88)
26 PRK14420 acylphosphatase; Prov 43.6 3.4 7.3E-05 30.9 -2.0 24 174-199 42-65 (91)
27 PF11280 DUF3081: Protein of u 42.6 19 0.00042 26.8 2.0 39 123-161 18-61 (79)
28 COG0071 IbpA Molecular chapero 41.8 69 0.0015 25.7 5.3 45 57-101 63-132 (146)
29 PRK14434 acylphosphatase; Prov 41.1 6.2 0.00014 29.8 -0.9 25 174-198 43-67 (92)
30 cd06472 ACD_ScHsp26_like Alpha 41.0 68 0.0015 23.4 4.8 18 57-74 22-40 (92)
31 PF12646 DUF3783: Domain of un 40.9 32 0.0007 23.6 2.8 30 175-204 3-32 (58)
32 smart00099 btg1 tob/btg1 famil 40.7 32 0.00069 27.1 3.0 28 181-208 22-58 (108)
33 cd06477 ACD_HspB3_Like Alpha c 39.4 20 0.00043 26.5 1.7 19 57-75 20-38 (83)
34 cd06480 ACD_HspB8_like Alpha-c 37.5 22 0.00048 26.9 1.7 20 57-76 28-47 (91)
35 cd06498 ACD_alphaB-crystallin_ 36.7 23 0.0005 26.0 1.7 18 57-74 20-37 (84)
36 cd06478 ACD_HspB4-5-6 Alpha-cr 36.5 28 0.0006 25.4 2.0 18 57-74 20-37 (83)
37 cd06476 ACD_HspB2_like Alpha c 35.6 25 0.00054 25.8 1.7 19 57-75 20-38 (83)
38 PF00712 DNA_pol3_beta: DNA po 33.4 2.1E+02 0.0044 21.9 6.6 82 52-157 25-106 (120)
39 PTZ00179 60S ribosomal protein 31.9 2.8E+02 0.0061 23.7 7.7 57 61-122 100-164 (189)
40 CHL00140 rpl6 ribosomal protei 31.3 3.2E+02 0.0069 23.0 8.3 57 59-120 93-151 (178)
41 cd06482 ACD_HspB10 Alpha cryst 30.6 34 0.00073 25.5 1.7 19 57-75 21-39 (87)
42 PRK14446 acylphosphatase; Prov 30.4 18 0.00038 27.2 0.1 20 174-194 42-61 (88)
43 cd06526 metazoan_ACD Alpha-cry 30.3 35 0.00076 24.5 1.7 20 57-76 20-39 (83)
44 PRK05518 rpl6p 50S ribosomal p 28.7 3.6E+02 0.0078 22.8 9.7 71 61-136 99-172 (180)
45 PRK14436 acylphosphatase; Prov 28.6 9.5 0.00021 28.7 -1.6 20 175-195 45-64 (91)
46 COG1072 CoaA Panthothenate kin 28.2 39 0.00085 30.9 1.9 32 151-183 166-197 (283)
47 PRK14449 acylphosphatase; Prov 27.8 7.8 0.00017 29.0 -2.2 22 174-196 43-64 (90)
48 cd06475 ACD_HspB1_like Alpha c 26.7 46 0.001 24.5 1.8 18 57-74 23-40 (86)
49 cd01231 PH_Lnk LNK-family Plec 25.6 1.4E+02 0.003 23.5 4.3 37 159-195 67-106 (107)
50 PRK14429 acylphosphatase; Prov 25.6 13 0.00029 27.7 -1.3 21 175-196 43-63 (90)
51 PF00013 KH_1: KH domain syndr 24.2 1.8E+02 0.0039 19.1 4.3 28 165-193 30-60 (60)
52 PRK14435 acylphosphatase; Prov 24.1 13 0.00027 27.9 -1.7 21 174-195 42-62 (90)
53 PRK14433 acylphosphatase; Prov 24.0 15 0.00032 27.4 -1.3 52 133-195 10-61 (87)
54 PF09840 DUF2067: Uncharacteri 22.3 2.3E+02 0.0051 24.2 5.5 90 85-195 26-127 (190)
55 PRK14423 acylphosphatase; Prov 22.0 20 0.00044 26.9 -0.9 20 175-195 46-65 (92)
56 cd06463 p23_like Proteins cont 21.8 2.6E+02 0.0057 18.8 6.5 44 57-100 19-72 (84)
57 PF14250 AbrB-like: AbrB-like 21.5 1.4E+02 0.0031 21.8 3.4 13 146-158 57-69 (71)
58 TIGR03654 L6_bact ribosomal pr 21.4 4.9E+02 0.011 21.7 8.5 56 59-119 92-149 (175)
59 PRK14451 acylphosphatase; Prov 20.7 17 0.00036 27.2 -1.6 21 174-195 43-63 (89)
60 PF05137 PilN: Fimbrial assemb 20.5 1.2E+02 0.0027 20.8 3.0 9 55-63 9-17 (78)
61 PRK05498 rplF 50S ribosomal pr 20.5 5.1E+02 0.011 21.6 8.5 56 59-119 93-150 (178)
62 PRK14440 acylphosphatase; Prov 20.2 18 0.00039 27.1 -1.5 21 174-195 43-63 (90)
No 1
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=100.00 E-value=1.9e-69 Score=455.80 Aligned_cols=178 Identities=57% Similarity=0.971 Sum_probs=175.2
Q ss_pred ccccccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccc
Q 027306 46 ESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVS 125 (225)
Q Consensus 46 ~Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt 125 (225)
|||||++||.||+||+|+++++.|+|+||+|+|+++|++.++++.++|.+.+..|++++++++||||+||||+|||+||+
T Consensus 1 msrig~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~gt~~slI~Nmi~GVt 80 (178)
T CHL00140 1 MSRIGKLPIKIPDNVNVSIDDQIIKVKGPKGTLSRKIPDLITIEIQDNSLFVSKKDESKKARALHGLYRTLINNMVIGVS 80 (178)
T ss_pred CCcccceeeecCCCCEEEEECCEEEEECCCEEEEEECCCCeEEEEeCCEEEEEcCCCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 027306 126 KGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 205 (225)
Q Consensus 126 ~Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGK 205 (225)
+||+++|+++|+||||.+++|.|.|+||||||+.++||+||+|+++++|+|+|+|+|||+||||||+||+||+|||||||
T Consensus 81 ~Gf~~~L~lvGvGyr~~~~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK 160 (178)
T CHL00140 81 EGFEKKLELQGVGYRAQVQGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDKELVGQFAAKIRSVRPPEPYKGK 160 (178)
T ss_pred cCceEEEEEEEEEEEEEEeCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECCHHHHHHHHHHHhccCCCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCeEEEeccCcccC
Q 027306 206 GVKYVDEVIRRKEGKAGK 223 (225)
Q Consensus 206 GI~y~~E~I~lK~gKk~k 223 (225)
||+|.||+|++|+||++|
T Consensus 161 GI~y~~e~i~~K~gK~~~ 178 (178)
T CHL00140 161 GIRYKGEVIRRKAGKAGK 178 (178)
T ss_pred cEeECCEEEEEecccCCC
Confidence 999999999999999954
No 2
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=100.00 E-value=3.2e-67 Score=442.18 Aligned_cols=178 Identities=54% Similarity=0.917 Sum_probs=174.8
Q ss_pred ccccccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccc
Q 027306 46 ESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVS 125 (225)
Q Consensus 46 ~Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt 125 (225)
|||||+++|.||++|+|+++++.|+|+||+|+|+++|++.+.++.+++.|.++.|+++++++++|||+||||+|||.||+
T Consensus 1 ms~ig~~~I~IP~~V~v~~~~~~v~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~gt~~s~I~Nmi~GVt 80 (178)
T PRK05498 1 MSRIGKKPIAIPAGVEVTINGNVVTVKGPKGELSRTLNPDVTVKVEDNEITVTRPDDSKKARALHGTTRALINNMVVGVT 80 (178)
T ss_pred CCcccccceecCCCCEEEEECCEEEEECCCEEEEEEcCCCeEEEEECCEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 027306 126 KGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 205 (225)
Q Consensus 126 ~Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGK 205 (225)
+||+++|+++|+||||.+++|.|.|+|||||++.++||+||+|+++++|+|+|+|+|+|+||||||+||++|+|||||||
T Consensus 81 ~Gf~~~L~lvGvgyrv~~~g~~l~l~LG~sh~i~~~Ip~gv~v~~~~~t~I~i~G~dke~Vg~~AA~Ir~~r~pe~Ykgk 160 (178)
T PRK05498 81 EGFEKKLEIVGVGYRAQVKGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQLVGQVAAEIRSYRPPEPYKGK 160 (178)
T ss_pred CCeEEEEEEEeEEEEEEEeCCeEEEEecCCEEEEEECCCCeEEEeCCCCEEEEEECCHHHHHHHHHHHhccCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCeEEEeccCcccC
Q 027306 206 GVKYVDEVIRRKEGKAGK 223 (225)
Q Consensus 206 GI~y~~E~I~lK~gKk~k 223 (225)
||+|.||+|+||+|||++
T Consensus 161 Gi~~~~e~i~~K~gKk~~ 178 (178)
T PRK05498 161 GIRYAGEVVRRKEGKKKK 178 (178)
T ss_pred cEeECCEEEEEecccCCC
Confidence 999999999999999864
No 3
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=100.00 E-value=1.1e-66 Score=437.99 Aligned_cols=175 Identities=55% Similarity=0.914 Sum_probs=172.5
Q ss_pred cccccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhccccccc
Q 027306 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSK 126 (225)
Q Consensus 47 Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~ 126 (225)
||||++||.||++|+|+++++.|+|+||+|+|+++|++.+.++.++|.+.++.|++++++++||||+||||+|||.||++
T Consensus 1 s~ig~~~I~IP~~V~v~~~~~~v~v~Gp~G~l~~~l~~~i~i~~~~~~i~v~~~~~~kk~~a~~gt~~s~i~Nmi~GVt~ 80 (175)
T TIGR03654 1 SRIGKKPIAIPAGVEVTIDGNVVTVKGPKGELSRTLHPGVTVKVEDGQLTVSRPNDSKEARALHGTTRALINNMVIGVSE 80 (175)
T ss_pred CcccccceecCCCcEEEEeCCEEEEEcCCeEEEEEcCCCeEEEEECCEEEEEecCCCHHHHHHHHHHHHHHHHHhheecc
Confidence 89999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccCc
Q 027306 127 GFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKG 206 (225)
Q Consensus 127 Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGKG 206 (225)
||+++|+++|+||||.+++|.|.|+|||||++.++||+||+++++++|+|+|+|+|||+||||||+||++||||||||||
T Consensus 81 Gf~~~L~lvGvgyrv~~~g~~l~l~LG~sh~i~~~Ip~~v~v~~~~~t~I~i~G~dke~Vgq~AA~Ir~~r~pepYKgkG 160 (175)
T TIGR03654 81 GFEKKLEIVGVGYRAQLQGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQLVGQVAAEIRAFRKPEPYKGKG 160 (175)
T ss_pred CcEEEEEEEEEEEEEEEeCCeEEEEecCceeEEEECCCCeEEEeCCCCEEEEEECCHHHHHHHHHHHhccCCCCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCeEEEeccCcc
Q 027306 207 VKYVDEVIRRKEGKA 221 (225)
Q Consensus 207 I~y~~E~I~lK~gKk 221 (225)
|+|.||+|+||+|||
T Consensus 161 i~~~~e~I~~K~gKk 175 (175)
T TIGR03654 161 IRYAGEVVRRKEGKK 175 (175)
T ss_pred EeECCEEEEEeCcCC
Confidence 999999999999996
No 4
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-65 Score=430.05 Aligned_cols=177 Identities=55% Similarity=0.881 Sum_probs=170.3
Q ss_pred ccccccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCe-EEEEeCCEEEEEecccchhhhhHHHhHHHHHhhccccc
Q 027306 46 ESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREV-KVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGV 124 (225)
Q Consensus 46 ~Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v-~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GV 124 (225)
|||||++||.+|+||+|+++++.++|+||+|+|+++|++.+ .++.+|+.+.+..++. ++.+|||||+||||+||++||
T Consensus 1 Msri~k~~i~~P~gV~V~i~~~~v~vkGpkGeL~~~~~~~~v~v~~~~~~~vv~~~~~-k~~~a~~Gt~rali~Nmv~GV 79 (178)
T COG0097 1 MSRIGKRPIVIPAGVTVSIEGQVVTVKGPKGELTREFHDNVVKVEVEDNILVVRPVDG-KRKRALHGTVRALINNMVKGV 79 (178)
T ss_pred CCceeeccEecCCCeEEEEeccEEEEECCCcEEEEEecCcceEEEecCCEEEEeeccc-chhHHHHHHHHHHHHHHheec
Confidence 89999999999999999999999999999999999999876 7788888888888777 666699999999999999999
Q ss_pred ccceEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCcccc
Q 027306 125 SKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKG 204 (225)
Q Consensus 125 t~Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKG 204 (225)
|+||+|+|+|+|+||||.++++.|.|+||||||+.+.||+|++++++++|+|+|+|+|||.||||||+||++|+||||||
T Consensus 80 teGf~~kL~ivgvgyra~v~g~~l~l~LG~shp~~~~ip~gi~v~v~~~t~I~v~GidKe~VGQ~AA~Ir~~r~pepykg 159 (178)
T COG0097 80 TEGFEKKLEIVGVGYRAQVVGGNLELFLGYSHPVVIEIPEGITVEVPGPTEIVVEGIDKELVGQVAANIRAARKPEPYKG 159 (178)
T ss_pred ccceEEEEEEEEecceeEEeccEEEEeecccCCeEEECCCCeEEEecCCCEEEEEcCCHHHHhHHHHHHHhccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCeEEEeccCcccC
Q 027306 205 KGVKYVDEVIRRKEGKAGK 223 (225)
Q Consensus 205 KGI~y~~E~I~lK~gKk~k 223 (225)
|||||+||+|++|+||++|
T Consensus 160 Kgi~ydge~I~~K~gK~~k 178 (178)
T COG0097 160 KGIRYDGEYIRRKEGKTGK 178 (178)
T ss_pred cceEEcCEEEEEeccccCC
Confidence 9999999999999999865
No 5
>KOG3254 consensus Mitochondrial/chloroplast ribosomal protein L6 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-61 Score=399.41 Aligned_cols=208 Identities=39% Similarity=0.617 Sum_probs=186.1
Q ss_pred CcccccccccccccceeecccccccccccccccccccccccccccccccccCCeecCCCcEEEEeCCEEEEEeCCeEEEE
Q 027306 1 MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSL 80 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~ 80 (225)
|+|+-.++|++ ++.|+++++.+.-++++.+.++.....++|+.++++. ++++.++|+||+|+|.+
T Consensus 1 M~si~~~l~~~---~l~fr~~r~~~~~~~~p~aqv~~~~k~i~~~e~k~~~------------lege~l~vkGP~gel~l 65 (211)
T KOG3254|consen 1 MFSIDSCLKTR---PLTFRIARLGMNFTTCPAAQVYVGKKEIIVKENKQRD------------LEGEQLQVKGPHGELNL 65 (211)
T ss_pred CchhhhhhccC---cceeeeeccceeeeecchHheeecceeEEeehhhccc------------cccCceEeeCCcceeec
Confidence 78888888877 8899999988877777766666666666666666655 89999999999999999
Q ss_pred EcCCCeEEEEe--C-CEEEEEecccchhhhhHHHhHHHHHhhcccccccceEEEEEEEEEeEEEEEeCCEEEEEccceEe
Q 027306 81 VYPREVKVDRE--D-SFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHP 157 (225)
Q Consensus 81 ~~~~~v~v~~~--~-~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~ 157 (225)
++|++++++.+ . +.+......++|++++||||+|||++||+.|||.||.+.|+|||+||||.++|+.|+|+|||||+
T Consensus 66 ~~P~~l~L~~dkk~~g~~~~~k~~etkkqr~mwgt~R~l~~N~v~GVt~g~~k~l~lVGvGYRa~legk~l~lklG~S~~ 145 (211)
T KOG3254|consen 66 RFPNYLNLSNDKKKSGMDANIKKQETKKQRAMWGTFRALLANNVKGVTMGFLKILKLVGVGYRASLEGKFLHLKLGYSHD 145 (211)
T ss_pred cCCccccccchhhhcceeeeecchhhHHHHHHHHHHHHHHhccchhhhhhhhheeeEEeeeeEEEecCceEEEEeccccc
Confidence 99999999533 3 44444444588999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccCceeecCeEEEeccCcccC
Q 027306 158 VRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGK 223 (225)
Q Consensus 158 i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGKGI~y~~E~I~lK~gKk~k 223 (225)
+.+.||++|+|+++.||.|+++|+|||+|+||||.+|+|+||||||||||+|+||++++|+||++|
T Consensus 146 v~l~iP~~v~Vk~p~ptsl~~~G~dKq~V~qFAAkvRsfkpPEPYKGKGIyv~dE~vklK~kK~~k 211 (211)
T KOG3254|consen 146 VLLSIPTDVQVKNPTPTSLVLRGIDKQKVTQFAAKVRSFKPPEPYKGKGIYVDDEKVKLKAKKSIK 211 (211)
T ss_pred eeecCCCceEEecCCCCEEEEecccHHHHHHHHHHHhccCCCCCcCCCceEeccceeeecccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999865
No 6
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=100.00 E-value=5.9e-49 Score=331.65 Aligned_cols=154 Identities=33% Similarity=0.534 Sum_probs=146.6
Q ss_pred cCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccccceE
Q 027306 51 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFE 129 (225)
Q Consensus 51 k~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~-~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~Gf~ 129 (225)
++||.||+||+|+++++.|+|+||+|+|+++|++ .++++.++|.+.+..|+++++++++|||+||||+|||+||++||+
T Consensus 7 ~~pI~IP~~V~v~i~~~~v~VkGp~G~L~~~~~~~~v~i~~~~~~i~v~~~~~~kk~ra~~gt~rslI~NmI~GVt~Gf~ 86 (180)
T PRK05518 7 REEIEIPEGVTVEIEGLVVTVKGPKGELTRDFWYPGVTISVEDGKVVIETEFARKKTKAMVGTFASHIKNMIKGVTEGFE 86 (180)
T ss_pred cccEEcCCCCEEEEECCEEEEECCCeEEEEEecCCcEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHhhheecccceE
Confidence 5799999999999999999999999999999987 899999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeE--EEEEeCCEEEE--EccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 027306 130 KKLQMVGVGY--RAALEGQVLVL--SLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 205 (225)
Q Consensus 130 ~kL~lvGvGY--ra~~~gn~L~l--~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGK 205 (225)
++|+++|+|| ||.++|+.|.| +||||||+.++||+||++++++ |+|+|+|+|||+||||||+||+.++ -|+|
T Consensus 87 ~~LelvGvGypira~~~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~-t~I~i~GiDKq~Vgq~AA~Ir~~~~---~~~k 162 (180)
T PRK05518 87 YKLKIVYSHFPMQVKVQGNEVVIENFLGEKSPRRAKILGGVKVKVKG-EDVIVEGIDKEDVGQTAANIEQATK---IKGF 162 (180)
T ss_pred EEEEEEecCccEEEEEcCCEEEEEeccccceeEEEeCCCCeEEEecC-CEEEEEeCCHHHHHHHHHHHHHhhc---ccCC
Confidence 9999999999 99999999999 8999999999999999999999 9999999999999999999999995 4555
Q ss_pred cee
Q 027306 206 GVK 208 (225)
Q Consensus 206 GI~ 208 (225)
.+|
T Consensus 163 d~r 165 (180)
T PRK05518 163 DRR 165 (180)
T ss_pred CCC
Confidence 554
No 7
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=100.00 E-value=1.2e-48 Score=327.30 Aligned_cols=148 Identities=32% Similarity=0.569 Sum_probs=142.3
Q ss_pred cCCeecCCCcEEEEeCCEEEEEeCCeEEEEEc-CCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccccceE
Q 027306 51 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVY-PREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFE 129 (225)
Q Consensus 51 k~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~-~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~Gf~ 129 (225)
..||.||+||+|+++++.|+|+||+|+|+++| ++.+.++.++|.+.++.|+++++++++|||+|||++|||+||++||+
T Consensus 1 ~~pI~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~Gf~ 80 (170)
T TIGR03653 1 REEIEIPEGVSVTIEGNIVTVKGPKGEVTRELWYPGIEISVEDGKVVIETDFARKKDKAMVGTYRSHIKNMIKGVTEGFE 80 (170)
T ss_pred CceEecCCCCEEEEeCCEEEEECCCeEEEEEEeCCcEEEEEeCCEEEEEeCCCCHHHHHHHHHHHHHHHhheeecccCeE
Confidence 36899999999999999999999999999999 78999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeE--EEEEeCCEEEE--EccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCC
Q 027306 130 KKLQMVGVGY--RAALEGQVLVL--SLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPP 199 (225)
Q Consensus 130 ~kL~lvGvGY--ra~~~gn~L~l--~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~P 199 (225)
++|+++|+|| ||.++|+.|.| +||||||+.++||+||+++++++ +|+|+|+|||.||||||.||+.++.
T Consensus 81 ~~LeivGvGy~~ra~~~g~~L~l~n~LG~Sh~i~~~iP~gI~v~~~~~-~I~i~G~DKq~Vgq~AA~Ir~~~~~ 153 (170)
T TIGR03653 81 YKMKVVYSHFPMQVKVEGNKVVIENFLGEKAPRRAKIPGGVKVKVKGE-EVIVTGIDKEDVGQTAANIEQATRI 153 (170)
T ss_pred EEEEEEeccccEEEEEcCCeEEEeeccccceeEEEECCCCeEEEecCC-EEEEEeCCHHHHHHHHHHHHHhhcc
Confidence 9999999999 99999999999 89999999999999999999985 9999999999999999999998853
No 8
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=100.00 E-value=3e-47 Score=323.49 Aligned_cols=165 Identities=21% Similarity=0.330 Sum_probs=150.5
Q ss_pred ccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCC---CeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhccccccc
Q 027306 50 GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR---EVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSK 126 (225)
Q Consensus 50 gk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~---~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~ 126 (225)
-..||.||+||+|+++++.|+|+||+|+|+++|++ .+.++.+++.|.++.|+++++.+++|||+||||+|||+||++
T Consensus 5 ~~~pI~IP~~V~V~i~~~~ItVkGpkG~Ls~~~~~~~~~i~i~~~~~~I~v~~~~~~kk~~al~Gt~rslI~NMI~GVt~ 84 (189)
T PTZ00179 5 SQDTITIPEDVTVSVKDRIVTVKGKRGTLTKDLRHLQLDFRVNKKNRTFTAVRWFGSKIPNSTINTALSHVRNMITGVTK 84 (189)
T ss_pred ccccEeCCCCCEEEEeCCEEEEECCCcEEEEEcCCCCcEEEEEecCCEEEEEeCCCCHHHHHHHHHHHHHHHHHhhhhcC
Confidence 45699999999999999999999999999999998 588888889999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEeE--EEEEeCCEEEE--EccceEeEEEECCCCcEEEEccC----CeEEEEeccHHHHHHHHHHhhccCC
Q 027306 127 GFEKKLQMVGVGY--RAALEGQVLVL--SLGFSHPVRMTIPDGIKVNVEEN----TRITVSGYDKSAIGQFAASIRKWRP 198 (225)
Q Consensus 127 Gf~~kL~lvGvGY--ra~~~gn~L~l--~LG~SH~i~~~IP~~Vkv~v~~~----t~Iil~GiDKq~Vgq~AA~Ir~~R~ 198 (225)
||+++|+++|+|| ||.++|+.|.| +||||||+.++||+||++++++| |+|+|+|+|||.||||||+|++.+
T Consensus 85 GF~k~L~ivgvgyp~ra~v~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~i~G~DKq~Vgq~AA~i~~~~- 163 (189)
T PTZ00179 85 GFRFKVRFAYAHFPISVSVENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELVLEGNDLEQVSREAAVMHQLC- 163 (189)
T ss_pred CEEEEEEEEEeCcceEEEEcCCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEEEEeCCHHHHHHHHHHHHHhh-
Confidence 9999999999999 99999999999 79999999999999999999998 899999999999999999999988
Q ss_pred CCccccCceee--cCeEEEec
Q 027306 199 PEPYKGKGVKY--VDEVIRRK 217 (225)
Q Consensus 199 PepYKGKGI~y--~~E~I~lK 217 (225)
--|+|.+|. ++=+|.-|
T Consensus 164 --~~~~~d~r~f~dgiy~~~k 182 (189)
T PTZ00179 164 --LVKKKDIRKFLDGIYVQTK 182 (189)
T ss_pred --cccCCCccEeecCEEEEEe
Confidence 445665543 34444433
No 9
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=100.00 E-value=4.9e-47 Score=322.44 Aligned_cols=155 Identities=23% Similarity=0.387 Sum_probs=143.4
Q ss_pred cCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCC---CeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccccc
Q 027306 51 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR---EVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKG 127 (225)
Q Consensus 51 k~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~---~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~G 127 (225)
..||.||+||+|+++++.|+|+||+|+|+++|++ .+.++.+++.|.++.|+++++.+++|||+||||+|||+||++|
T Consensus 7 ~~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~~~~~~~~i~i~~~~~~i~v~~~~~~~k~~a~~Gt~rslI~NmI~GVt~G 86 (190)
T PTZ00027 7 SEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKLSKDGKYIKVEMWFGTPSHLACIRTVCSHIKNMMTGVTKK 86 (190)
T ss_pred CCCEecCCCCEEEEECCEEEEECCCceEEEEecCCCceEEEEeCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 4599999999999999999999999999999997 6777778999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEeEEEE--E--eCCEEEE--EccceEeEEEECCCCcEEEEccC--CeEEEEeccHHHHHHHHHHhhccCCC
Q 027306 128 FEKKLQMVGVGYRAA--L--EGQVLVL--SLGFSHPVRMTIPDGIKVNVEEN--TRITVSGYDKSAIGQFAASIRKWRPP 199 (225)
Q Consensus 128 f~~kL~lvGvGYra~--~--~gn~L~l--~LG~SH~i~~~IP~~Vkv~v~~~--t~Iil~GiDKq~Vgq~AA~Ir~~R~P 199 (225)
|+++|+++|+||||. + +|+.|.| +||||||+.++||+||+++++++ |+|+|+|+|||.||||||+||+.++-
T Consensus 87 f~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~G~DKq~Vgq~AA~I~~~~~~ 166 (190)
T PTZ00027 87 FQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAALIHQSTLV 166 (190)
T ss_pred EEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999 6 6788999 89999999999999999999976 89999999999999999999998843
Q ss_pred CccccCcee
Q 027306 200 EPYKGKGVK 208 (225)
Q Consensus 200 epYKGKGI~ 208 (225)
|+|..|
T Consensus 167 ---~~~d~r 172 (190)
T PTZ00027 167 ---RNKDIR 172 (190)
T ss_pred ---cCCCcc
Confidence 455433
No 10
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=99.76 E-value=2.1e-18 Score=125.54 Aligned_cols=72 Identities=39% Similarity=0.657 Sum_probs=68.7
Q ss_pred cCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEE--EeCCEEEEEecccchhhhh---HHHhHHHHHhhcccccccc
Q 027306 56 VPSNVTITLGGQDLKVKGPLGELSLVYPREVKVD--REDSFLRVRKTVETRRANQ---MHGLFRTLTDNMVVGVSKG 127 (225)
Q Consensus 56 IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~--~~~~~i~v~~~~~~kk~~a---~~GT~rsli~NmI~GVt~G 127 (225)
||+||+|+++++.++|+||+|+|++++|+.+.++ .+++.+.+..+.+.+++++ +|||+|+|++||++||++|
T Consensus 1 IP~gV~v~~~~~~i~v~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~~~a~~gt~rsli~n~i~GV~~G 77 (77)
T PF00347_consen 1 IPEGVKVTIKGNIITVKGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKAFAAMIGTYRSLINNMIKGVTEG 77 (77)
T ss_dssp SSTTCEEEEETTEEEEESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred CCCcEEEEEeCcEEEEECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhhhHHhhccccccccCceeEECCC
Confidence 7999999999999999999999999999998888 6699999999999999999 9999999999999999987
No 11
>KOG3255 consensus 60S ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.2e-17 Score=139.19 Aligned_cols=142 Identities=25% Similarity=0.326 Sum_probs=122.9
Q ss_pred cCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEEEeCC---EEEEEecccchhhhhHHHhHHHHHhhccccccc
Q 027306 51 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDREDS---FLRVRKTVETRRANQMHGLFRTLTDNMVVGVSK 126 (225)
Q Consensus 51 k~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~-~v~v~~~~~---~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~ 126 (225)
++.+.||+||++++++..++|+||+|+|.++|.| .+.+...++ .+.+..|.+.|+..+..-|..++++||+.||+.
T Consensus 7 n~tv~iPe~v~it~k~~v~~v~gprgtl~~d~~hi~~~~~~~~~~~~~ik~~~~~~~Rk~va~l~t~~s~ien~i~gvt~ 86 (179)
T KOG3255|consen 7 NQTVHIPENVDITLKGHVVIVKGPRGTLWRDFNHINVELSLLGKKKKRLKIDKWWGTRKGVACLRTVVSHIENCIKGVTI 86 (179)
T ss_pred ceEEecCCCceEEEeeEEEEEeCCCcceeccccccchhhhhhcchhhhhhhhhhhccchhHHHHHHHHHHHHHHHhcchH
Confidence 5678999999999999999999999999999985 344443333 488899999999999999999999999999999
Q ss_pred ceEEEEEEEEEeEE--EEEeCC----EEEEEccceEeEEEECCCCcEEEEc--cCCeEEEEeccHHHHHHHHHH
Q 027306 127 GFEKKLQMVGVGYR--AALEGQ----VLVLSLGFSHPVRMTIPDGIKVNVE--ENTRITVSGYDKSAIGQFAAS 192 (225)
Q Consensus 127 Gf~~kL~lvGvGYr--a~~~gn----~L~l~LG~SH~i~~~IP~~Vkv~v~--~~t~Iil~GiDKq~Vgq~AA~ 192 (225)
||.|+|..++.||- ....++ .+..+||.+.+.+++..+|+..... -+++|+++|.|.+.|++-||.
T Consensus 87 ~~i~k~~av~a~f~in~~~~~~~~s~~i~n~l~~k~~~~~~~~~Gv~~~~~~~~~~~i~~~~~~~~~vs~~~a~ 160 (179)
T KOG3255|consen 87 GFIYKMRAVYAHFPINTVIQENGKSEEIRNFLGEKLVRRVEMRPGVTIVRSSKVKDEIVLEGNDLELVSQSAAL 160 (179)
T ss_pred HHHHHhhhHHhhccccceecCCCcchhhhhhhhhhccceEecCCCeEEeeehhcchhheecccchhhhhhHhHh
Confidence 99999999999994 445555 2344799999999999999888663 377899999999999998877
No 12
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=98.60 E-value=7.9e-09 Score=74.90 Aligned_cols=71 Identities=28% Similarity=0.374 Sum_probs=62.5
Q ss_pred EEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEc--c--CCeEEEEeccHHHHHHHHHHhhccCCCCccccCceee
Q 027306 136 GVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVE--E--NTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKY 209 (225)
Q Consensus 136 GvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~--~--~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGKGI~y 209 (225)
+.||++.+++ .+....|++|...+++|++|.+++. + .+...+.+.|++.. +||.++.+|.+.+|+++|+.+
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~--~~a~~gt~rsli~n~i~GV~~ 76 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKA--FAAMIGTYRSLINNMIKGVTE 76 (77)
T ss_dssp STTCEEEEET-TEEEEESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeC-cEEEEECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhh--hHHhhccccccccCceeEECC
Confidence 4688999999 8888999999999999999999965 3 33557899999999 999999999999999999864
No 13
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=73.34 E-value=5.9 Score=29.21 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=29.8
Q ss_pred CCCcEEEEeCCEEEEEeCC--------eEEEEEcC--CC-----eEEEE-eCCEEEEE
Q 027306 57 PSNVTITLGGQDLKVKGPL--------GELSLVYP--RE-----VKVDR-EDSFLRVR 98 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl--------G~l~~~~~--~~-----v~v~~-~~~~i~v~ 98 (225)
|++++|+++++.|+|+|-+ |+.++.|. .. ++-.. ++|.|.|.
T Consensus 21 pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~ 78 (81)
T cd06479 21 PEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIK 78 (81)
T ss_pred HHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEE
Confidence 7899999999999999854 66666554 21 34444 56777664
No 14
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=65.24 E-value=22 Score=23.61 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=28.9
Q ss_pred CCCcEEEEeCCEEEEEeCCe------------EEEEEcCCC-----eEEEEeCCEEEEE
Q 027306 57 PSNVTITLGGQDLKVKGPLG------------ELSLVYPRE-----VKVDREDSFLRVR 98 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGplG------------~l~~~~~~~-----v~v~~~~~~i~v~ 98 (225)
|+.+.|.++++.+.|+|... .+..+||+. +.....++.|.+.
T Consensus 19 ~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~ 77 (80)
T cd00298 19 KEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEIT 77 (80)
T ss_pred HHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEE
Confidence 58899999999999998754 455556543 3334556666654
No 15
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=62.58 E-value=26 Score=25.84 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=32.5
Q ss_pred CCCcEEEEeCCEEEEEeCCe------------------EEEEEcCCC-----eEEEEeCCEEEEEecc
Q 027306 57 PSNVTITLGGQDLKVKGPLG------------------ELSLVYPRE-----VKVDREDSFLRVRKTV 101 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGplG------------------~l~~~~~~~-----v~v~~~~~~i~v~~~~ 101 (225)
|++++|+++++.|+|+|-.. .-++.||.. ++...++|.|.|....
T Consensus 20 ~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~pk 87 (102)
T PF00011_consen 20 KEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGVLTITIPK 87 (102)
T ss_dssp GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSEEEEEEEB
T ss_pred hHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCEEEEEEEc
Confidence 58999999999999999887 334555533 5566778888887554
No 16
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=61.92 E-value=15 Score=27.18 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=17.0
Q ss_pred CCCcEEEEeCCEEEEEeCC
Q 027306 57 PSNVTITLGGQDLKVKGPL 75 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl 75 (225)
|++++|+++++.|+|+|-.
T Consensus 20 ~edI~V~v~~~~L~I~g~~ 38 (87)
T cd06481 20 PEDLSVRVDGRKLVVTGKR 38 (87)
T ss_pred hHHeEEEEECCEEEEEEEE
Confidence 7899999999999999864
No 17
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=57.55 E-value=25 Score=25.91 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=16.3
Q ss_pred CCCcEEEEeCCEEEEEeC
Q 027306 57 PSNVTITLGGQDLKVKGP 74 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGp 74 (225)
|++++|+++++.|+|+|.
T Consensus 24 kedi~v~~~~~~L~I~g~ 41 (90)
T cd06470 24 EDDLEIEVENNQLTVTGK 41 (90)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 588999999999999985
No 18
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=55.84 E-value=31 Score=25.37 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=17.2
Q ss_pred CCCcEEEEeCCEEEEEeCC
Q 027306 57 PSNVTITLGGQDLKVKGPL 75 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl 75 (225)
|++++|++.++.|+|+|-.
T Consensus 23 ~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06497 23 PEDLTVKVLDDYVEIHGKH 41 (86)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 6899999999999999964
No 19
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=53.85 E-value=31 Score=23.68 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=22.8
Q ss_pred CcEEEEccCCeEEEEeccHHHHHHHHHHh
Q 027306 165 GIKVNVEENTRITVSGYDKSAIGQFAASI 193 (225)
Q Consensus 165 ~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~I 193 (225)
|+++.++++..+.|+|.|++.|....+.|
T Consensus 32 g~~I~i~~~g~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 32 GVKIDIEDDGTVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred CCEEEeCCCCEEEEEeCCHHHHHHHHHHh
Confidence 56666777778999999999988776655
No 20
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=50.53 E-value=17 Score=31.05 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=20.7
Q ss_pred eecCCCcEEEEeC-CEEEEEeCCeEE
Q 027306 54 IEVPSNVTITLGG-QDLKVKGPLGEL 78 (225)
Q Consensus 54 I~IP~~V~v~i~~-~~i~VkGplG~l 78 (225)
++||+||++++.+ ..|+|+|+.=++
T Consensus 115 ~~ip~gi~v~v~~~t~I~v~GidKe~ 140 (178)
T COG0097 115 IEIPEGITVEVPGPTEIVVEGIDKEL 140 (178)
T ss_pred EECCCCeEEEecCCCEEEEEcCCHHH
Confidence 4899999999988 669999987443
No 21
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=49.98 E-value=84 Score=21.75 Aligned_cols=44 Identities=20% Similarity=0.102 Sum_probs=32.0
Q ss_pred CCCcEEEEeCCEEEEEeCCeEEEEEcCCCe-----EEEEeCCEEEEEec
Q 027306 57 PSNVTITLGGQDLKVKGPLGELSLVYPREV-----KVDREDSFLRVRKT 100 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGplG~l~~~~~~~v-----~v~~~~~~i~v~~~ 100 (225)
+++++++++++.+.+.|..=.+..+|++.| .....++.+.+...
T Consensus 19 ~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~ 67 (78)
T cd06469 19 TSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGNGVLVFTLV 67 (78)
T ss_pred cccceEEEecCEEEEcCCCEEEEEeCcccccccccEEEEeCCEEEEEEE
Confidence 688999999999999986555667777654 33456777777644
No 22
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=49.64 E-value=55 Score=23.82 Aligned_cols=19 Identities=5% Similarity=0.142 Sum_probs=15.9
Q ss_pred CCCcEEEEeCCEEEEEeCC
Q 027306 57 PSNVTITLGGQDLKVKGPL 75 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl 75 (225)
|++++|++.++.|+|+|-.
T Consensus 23 ~edi~v~~~~~~L~I~g~~ 41 (93)
T cd06471 23 KEDIKLDYKDGYLTISAKR 41 (93)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 4889999999999998844
No 23
>PF12970 DUF3858: Domain of Unknown Function with PDB structure (DUF3858); InterPro: IPR024544 This domain of unknown function is structurally similar to part of neuropilin-2. The proteins it occurs in have not yet been functionally characterised.; PDB: 3KD4_A.
Probab=48.10 E-value=63 Score=25.77 Aligned_cols=61 Identities=23% Similarity=0.431 Sum_probs=36.4
Q ss_pred CCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhh---hHHHhHHHHHh
Q 027306 52 QPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRAN---QMHGLFRTLTD 118 (225)
Q Consensus 52 ~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~---a~~GT~rsli~ 118 (225)
..|.+|+|-++.--...-.+.-|-|++++. +..+++.+.|...-.-+||. +=..-+|+|+.
T Consensus 41 yti~~pegm~l~t~~~~K~I~N~~Gk~~is------v~~~~~~~~V~rsL~L~KqlitPaEY~afr~L~~ 104 (116)
T PF12970_consen 41 YTIELPEGMKLVTPPMEKKIDNPVGKVSIS------VKPEGNKIKVTRSLELKKQLITPAEYPAFRSLMT 104 (116)
T ss_dssp EEEEE-TT-EE-S--S-EEEEETTEEEEEE------EEEETTEEEEEEEEEE--SEE-HHHHHHHHHHHH
T ss_pred EEEEcCCCCeeecCccceeccCCcceEEEE------EEecCCeEEEEEEEEEeeeeeCchhHHHHHHHHH
Confidence 468999999988877788999999998874 46778888776544333332 12234566554
No 24
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=45.41 E-value=1.8e+02 Score=24.34 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=40.9
Q ss_pred EEEEeCCEEEEE---eCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhccc
Q 027306 61 TITLGGQDLKVK---GPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVV 122 (225)
Q Consensus 61 ~v~i~~~~i~Vk---GplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~ 122 (225)
+++++++.+.++ |=.-...+++|..+.++..++.|.++-.+ ++..|.+.|.|++...
T Consensus 93 ra~~~g~~L~l~n~LG~Sh~i~~~iP~gI~v~~~~~~I~i~G~D-----Kq~Vgq~AA~Ir~~~~ 152 (170)
T TIGR03653 93 QVKVEGNKVVIENFLGEKAPRRAKIPGGVKVKVKGEEVIVTGID-----KEDVGQTAANIEQATR 152 (170)
T ss_pred EEEEcCCeEEEeeccccceeEEEECCCCeEEEecCCEEEEEeCC-----HHHHHHHHHHHHHhhc
Confidence 556677777774 44456778888888888776667776554 4678899999988654
No 25
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=44.63 E-value=82 Score=21.85 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=16.8
Q ss_pred CCCcEEEEeCCEEEEEeCCe
Q 027306 57 PSNVTITLGGQDLKVKGPLG 76 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGplG 76 (225)
|++++|++.++.|.|+|..-
T Consensus 20 ~~~i~V~v~~~~l~I~g~~~ 39 (88)
T cd06464 20 KEDIKVEVEDGVLTISGERE 39 (88)
T ss_pred HHHeEEEEECCEEEEEEEEe
Confidence 58899999999999997654
No 26
>PRK14420 acylphosphatase; Provisional
Probab=43.65 E-value=3.4 Score=30.93 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=19.1
Q ss_pred CeEEEEeccHHHHHHHHHHhhccCCC
Q 027306 174 TRITVSGYDKSAIGQFAASIRKWRPP 199 (225)
Q Consensus 174 t~Iil~GiDKq~Vgq~AA~Ir~~R~P 199 (225)
-+|.++|.+ +.|-+|...|++- ||
T Consensus 42 Vei~~qG~~-~~i~~f~~~l~~~-p~ 65 (91)
T PRK14420 42 VEIEAEGPE-EALQLFLDAIEKG-SP 65 (91)
T ss_pred EEEEEEECH-HHHHHHHHHHHhC-CC
Confidence 378888965 8899999999975 44
No 27
>PF11280 DUF3081: Protein of unknown function (DUF3081); InterPro: IPR021432 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=42.63 E-value=19 Score=26.75 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=26.3
Q ss_pred ccccceEEEEEEEEE-----eEEEEEeCCEEEEEccceEeEEEE
Q 027306 123 GVSKGFEKKLQMVGV-----GYRAALEGQVLVLSLGFSHPVRMT 161 (225)
Q Consensus 123 GVt~Gf~~kL~lvGv-----GYra~~~gn~L~l~LG~SH~i~~~ 161 (225)
|=.....+.|.=+-+ ||.+.++++.+.|.|||=..-.+.
T Consensus 18 Ge~~~~~y~l~GI~A~~D~DGYtv~L~~~~VtLtl~FHnty~~d 61 (79)
T PF11280_consen 18 GEKTEGGYELEGITAFSDFDGYTVYLEDNGVTLTLGFHNTYHLD 61 (79)
T ss_pred CccCCCcEEEccEEEEecCCCcEEEEeCCCEEEEEEeccceecC
Confidence 333444454443333 889999999999999996654443
No 28
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=41.76 E-value=69 Score=25.67 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=31.7
Q ss_pred CCCcEEEEeCCEEEEEeCC------------------eEEEE--EcCCC-----eEEEEeCCEEEEEecc
Q 027306 57 PSNVTITLGGQDLKVKGPL------------------GELSL--VYPRE-----VKVDREDSFLRVRKTV 101 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl------------------G~l~~--~~~~~-----v~v~~~~~~i~v~~~~ 101 (225)
+++++|++.++.|+|+|-. |+..+ .||.+ +.-..++|.|.|....
T Consensus 63 kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk 132 (146)
T COG0071 63 KEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPK 132 (146)
T ss_pred hHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEeeCcEEEEEEec
Confidence 4799999999999999877 44444 44433 3445678888886543
No 29
>PRK14434 acylphosphatase; Provisional
Probab=41.06 E-value=6.2 Score=29.78 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=19.6
Q ss_pred CeEEEEeccHHHHHHHHHHhhccCC
Q 027306 174 TRITVSGYDKSAIGQFAASIRKWRP 198 (225)
Q Consensus 174 t~Iil~GiDKq~Vgq~AA~Ir~~R~ 198 (225)
-+|.++|.+.+.|-+|...|++=.|
T Consensus 43 Vei~~qG~~~~~l~~f~~~l~~g~p 67 (92)
T PRK14434 43 VEILAQSDDSAKLAKFIQEIRKGPS 67 (92)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCC
Confidence 3677888777789999999987443
No 30
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=41.04 E-value=68 Score=23.42 Aligned_cols=18 Identities=17% Similarity=0.446 Sum_probs=14.9
Q ss_pred CCCcEEEEeC-CEEEEEeC
Q 027306 57 PSNVTITLGG-QDLKVKGP 74 (225)
Q Consensus 57 P~~V~v~i~~-~~i~VkGp 74 (225)
|++++|++++ +.|+|+|-
T Consensus 22 ~edi~i~v~~~~~L~I~g~ 40 (92)
T cd06472 22 KEDVKVEVEDGRVLRISGE 40 (92)
T ss_pred hHhEEEEEeCCCEEEEEEE
Confidence 5899999986 48999984
No 31
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.87 E-value=32 Score=23.57 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=27.0
Q ss_pred eEEEEeccHHHHHHHHHHhhccCCCCcccc
Q 027306 175 RITVSGYDKSAIGQFAASIRKWRPPEPYKG 204 (225)
Q Consensus 175 ~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKG 204 (225)
-+++.|.+-+.+.++-..+|+..-|.|||.
T Consensus 3 ~ll~~g~~~~el~~~l~~~r~~~~~~~~kA 32 (58)
T PF12646_consen 3 FLLFSGFSGEELDKFLDALRKAGIPIPLKA 32 (58)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCCcceEE
Confidence 478999999999999999999988998874
No 32
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=40.69 E-value=32 Score=27.06 Aligned_cols=28 Identities=36% Similarity=0.875 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHHhhc---------cCCCCccccCcee
Q 027306 181 YDKSAIGQFAASIRK---------WRPPEPYKGKGVK 208 (225)
Q Consensus 181 iDKq~Vgq~AA~Ir~---------~R~PepYKGKGI~ 208 (225)
.+.+.|+.|++.+.. |-|.+|.||-|-|
T Consensus 22 l~~~~v~~F~~~L~~~L~~~y~~HWyP~~P~kGqayR 58 (108)
T smart00099 22 LSKRRVEIFAEKLTRLLKEKYKNHWYPEKPYKGSGFR 58 (108)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceE
Confidence 688999999999874 9999999999954
No 33
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=39.37 E-value=20 Score=26.50 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=16.1
Q ss_pred CCCcEEEEeCCEEEEEeCC
Q 027306 57 PSNVTITLGGQDLKVKGPL 75 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl 75 (225)
|+.++|+++++.|+|+|-.
T Consensus 20 ~edI~V~v~~~~L~I~ge~ 38 (83)
T cd06477 20 PEDIIIQVFEGWLLIKGQH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 6888999999999998854
No 34
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=37.55 E-value=22 Score=26.85 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.6
Q ss_pred CCCcEEEEeCCEEEEEeCCe
Q 027306 57 PSNVTITLGGQDLKVKGPLG 76 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGplG 76 (225)
|+.++|++.++.|+|+|...
T Consensus 28 pEDL~Vkv~~~~L~V~Gkh~ 47 (91)
T cd06480 28 PEELTVKTKDGFVEVSGKHE 47 (91)
T ss_pred HHHcEEEEECCEEEEEEEEC
Confidence 89999999999999998654
No 35
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=36.72 E-value=23 Score=25.99 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=16.1
Q ss_pred CCCcEEEEeCCEEEEEeC
Q 027306 57 PSNVTITLGGQDLKVKGP 74 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGp 74 (225)
|++++|++.++.|+|+|-
T Consensus 20 ~edi~V~v~~~~L~I~g~ 37 (84)
T cd06498 20 PEELKVKVLGDFIEIHGK 37 (84)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 689999999999999984
No 36
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=36.55 E-value=28 Score=25.39 Aligned_cols=18 Identities=17% Similarity=0.525 Sum_probs=15.9
Q ss_pred CCCcEEEEeCCEEEEEeC
Q 027306 57 PSNVTITLGGQDLKVKGP 74 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGp 74 (225)
|++++|+++++.|+|+|-
T Consensus 20 ~edI~V~v~~~~L~I~g~ 37 (83)
T cd06478 20 PEELSVKVLGDFVEIHGK 37 (83)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 689999999999999984
No 37
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=35.59 E-value=25 Score=25.84 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.4
Q ss_pred CCCcEEEEeCCEEEEEeCC
Q 027306 57 PSNVTITLGGQDLKVKGPL 75 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl 75 (225)
|++++|++.++.|+|+|-.
T Consensus 20 ~edi~V~v~~~~L~I~g~~ 38 (83)
T cd06476 20 PDEITVRTVDNLLEVSARH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 6889999999999999854
No 38
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AWA_C 1VPK_A 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D ....
Probab=33.38 E-value=2.1e+02 Score=21.87 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=50.1
Q ss_pred CCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccccceEEE
Q 027306 52 QPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKK 131 (225)
Q Consensus 52 ~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~Gf~~k 131 (225)
..++|-.||.++.+++.|++.+-..++.....-......+++.+.+... ++.+++.....+=...
T Consensus 25 ~~~piL~~ili~a~~~~l~l~atD~e~~i~~~i~~~~~~~~G~~~v~ak---------------~l~~ivk~lp~~~~I~ 89 (120)
T PF00712_consen 25 STIPILSNILIEAKDNKLTLTATDLEISIRTTIPAEIEEEEGSILVPAK---------------KLFDIVKKLPDDEEIT 89 (120)
T ss_dssp SSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEETEEEEE-EEEEEEHH---------------HHHHHHHHSSSTSEEE
T ss_pred CChHHhccEEEEEeCCEEEEEEEcCeEEEEEEEeceeecCCeEEEEEhH---------------HHHHHHHhCCCCCeEE
Confidence 3557779999999999999999999888766433333345677777422 3444555555533444
Q ss_pred EEEEEEeEEEEEeCCEEEEEccceEe
Q 027306 132 LQMVGVGYRAALEGQVLVLSLGFSHP 157 (225)
Q Consensus 132 L~lvGvGYra~~~gn~L~l~LG~SH~ 157 (225)
++.. ++.+.+.-|-++.
T Consensus 90 i~~~---------~~~l~I~~~~~~f 106 (120)
T PF00712_consen 90 IEVE---------ENKLTIKSGKSRF 106 (120)
T ss_dssp EEEE---------TTEEEEEETTEEE
T ss_pred EEEe---------CCEEEEEECCEEE
Confidence 4443 4566665555443
No 39
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=31.86 E-value=2.8e+02 Score=23.65 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=41.4
Q ss_pred EEEEeCCEEEEE---eCCeEEEEEcCCCeEEEEeC-----CEEEEEecccchhhhhHHHhHHHHHhhccc
Q 027306 61 TITLGGQDLKVK---GPLGELSLVYPREVKVDRED-----SFLRVRKTVETRRANQMHGLFRTLTDNMVV 122 (225)
Q Consensus 61 ~v~i~~~~i~Vk---GplG~l~~~~~~~v~v~~~~-----~~i~v~~~~~~kk~~a~~GT~rsli~NmI~ 122 (225)
+++++++.|.++ |=.-....++|..+.+...+ +.|.++-.+ ++..|.++|.|++...
T Consensus 100 ra~v~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~i~G~D-----Kq~Vgq~AA~i~~~~~ 164 (189)
T PTZ00179 100 SVSVENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELVLEGND-----LEQVSREAAVMHQLCL 164 (189)
T ss_pred EEEEcCCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEEEEeCC-----HHHHHHHHHHHHHhhc
Confidence 667788888885 55556778888888887654 467676443 4678999999998654
No 40
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=31.29 E-value=3.2e+02 Score=22.96 Aligned_cols=57 Identities=16% Similarity=0.298 Sum_probs=39.6
Q ss_pred CcEEEEeCCEEEE-EeCCeEEEEEcCCCeEEEEeCC-EEEEEecccchhhhhHHHhHHHHHhhc
Q 027306 59 NVTITLGGQDLKV-KGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDNM 120 (225)
Q Consensus 59 ~V~v~i~~~~i~V-kGplG~l~~~~~~~v~v~~~~~-~i~v~~~~~~kk~~a~~GT~rsli~Nm 120 (225)
|.+++++++.|.+ =|=.-.....+|..+.+...+. .|.++-.+ ++..|.+.|.|++.
T Consensus 93 Gyr~~~~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~d-----ke~Vgq~AA~Ir~~ 151 (178)
T CHL00140 93 GYRAQVQGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGID-----KELVGQFAAKIRSV 151 (178)
T ss_pred EEEEEEeCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECC-----HHHHHHHHHHHhcc
Confidence 3566667776554 3555567888888888887765 67776554 45678888888763
No 41
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=30.62 E-value=34 Score=25.54 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=15.9
Q ss_pred CCCcEEEEeCCEEEEEeCC
Q 027306 57 PSNVTITLGGQDLKVKGPL 75 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl 75 (225)
|++|+|+++++.|+|+|-.
T Consensus 21 kedI~V~v~~~~L~I~ger 39 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAER 39 (87)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5788999999999998853
No 42
>PRK14446 acylphosphatase; Provisional
Probab=30.37 E-value=18 Score=27.18 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=15.9
Q ss_pred CeEEEEeccHHHHHHHHHHhh
Q 027306 174 TRITVSGYDKSAIGQFAASIR 194 (225)
Q Consensus 174 t~Iil~GiDKq~Vgq~AA~Ir 194 (225)
-+|.++| |.+.+.+|.+.++
T Consensus 42 Vei~~qG-~~~~l~~f~~~l~ 61 (88)
T PRK14446 42 VEVVAAG-SAAALEALEAWLW 61 (88)
T ss_pred EEEEEEe-CHHHHHHHHHHHh
Confidence 3667777 5678999999998
No 43
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=30.29 E-value=35 Score=24.54 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=17.2
Q ss_pred CCCcEEEEeCCEEEEEeCCe
Q 027306 57 PSNVTITLGGQDLKVKGPLG 76 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGplG 76 (225)
|++++|+++++.|+|+|-..
T Consensus 20 ~edI~v~v~~~~L~I~g~~~ 39 (83)
T cd06526 20 PEELKVKVSDNKLVVEGKHE 39 (83)
T ss_pred HHHcEEEEECCEEEEEEEEe
Confidence 68999999999999998743
No 44
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=28.73 E-value=3.6e+02 Score=22.82 Aligned_cols=71 Identities=10% Similarity=-0.034 Sum_probs=46.1
Q ss_pred EEEEeCCEEEEE---eCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccccceEEEEEEEE
Q 027306 61 TITLGGQDLKVK---GPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVG 136 (225)
Q Consensus 61 ~v~i~~~~i~Vk---GplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~Gf~~kL~lvG 136 (225)
+++++++.+.++ |=.-.....+|..+.++..+..|.++-.+ ++..|.+.|.|+|...-=.....+-|.=+|
T Consensus 99 ra~~~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~t~I~i~GiD-----Kq~Vgq~AA~Ir~~~~~~~kd~r~f~dgiy 172 (180)
T PRK05518 99 QVKVQGNEVVIENFLGEKSPRRAKILGGVKVKVKGEDVIVEGID-----KEDVGQTAANIEQATKIKGFDRRVFQDGIY 172 (180)
T ss_pred EEEEcCCEEEEEeccccceeEEEeCCCCeEEEecCCEEEEEeCC-----HHHHHHHHHHHHHhhcccCCCCCEeecCEE
Confidence 556677777774 44445677788788887666567776554 466889999999976544444444443333
No 45
>PRK14436 acylphosphatase; Provisional
Probab=28.64 E-value=9.5 Score=28.67 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=15.8
Q ss_pred eEEEEeccHHHHHHHHHHhhc
Q 027306 175 RITVSGYDKSAIGQFAASIRK 195 (225)
Q Consensus 175 ~Iil~GiDKq~Vgq~AA~Ir~ 195 (225)
+|.++| +.+.|.+|-+.+++
T Consensus 45 ei~~qG-~~~~i~~f~~~l~~ 64 (91)
T PRK14436 45 EAVLEG-DEERVEALIGWAHQ 64 (91)
T ss_pred EEEEEc-CHHHHHHHHHHHhh
Confidence 677778 55779999999884
No 46
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=28.20 E-value=39 Score=30.90 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=26.4
Q ss_pred EccceEeEEEECCCCcEEEEccCCeEEEEeccH
Q 027306 151 SLGFSHPVRMTIPDGIKVNVEENTRITVSGYDK 183 (225)
Q Consensus 151 ~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDK 183 (225)
-=.|||.+.-.+|.+..| +++++.|+++|++.
T Consensus 166 aPvysh~~yD~vpd~~~v-~~~pdIlI~EG~nv 197 (283)
T COG1072 166 APVYSHLIYDPVPDAFQV-VPQPDILIVEGNNV 197 (283)
T ss_pred cccccccccccCCCceee-cCCCCEEEEechhh
Confidence 346999999999999887 55577889999974
No 47
>PRK14449 acylphosphatase; Provisional
Probab=27.77 E-value=7.8 Score=28.97 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=17.1
Q ss_pred CeEEEEeccHHHHHHHHHHhhcc
Q 027306 174 TRITVSGYDKSAIGQFAASIRKW 196 (225)
Q Consensus 174 t~Iil~GiDKq~Vgq~AA~Ir~~ 196 (225)
-+|.++| |.+.|.+|.+.|++-
T Consensus 43 Vei~~~G-~~~~v~~f~~~l~~~ 64 (90)
T PRK14449 43 VEVVAEG-DEENIKELINFIKTG 64 (90)
T ss_pred EEEEEEe-CHHHHHHHHHHHhhC
Confidence 3677888 446799999999873
No 48
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=26.72 E-value=46 Score=24.47 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=15.3
Q ss_pred CCCcEEEEeCCEEEEEeC
Q 027306 57 PSNVTITLGGQDLKVKGP 74 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGp 74 (225)
|++++|++.++.|+|+|-
T Consensus 23 ~edi~V~v~~~~L~I~g~ 40 (86)
T cd06475 23 PEELVVKTKDGVVEITGK 40 (86)
T ss_pred HHHEEEEEECCEEEEEEE
Confidence 588889998889999884
No 49
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=25.63 E-value=1.4e+02 Score=23.47 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=29.2
Q ss_pred EEECCCCcEE---EEccCCeEEEEeccHHHHHHHHHHhhc
Q 027306 159 RMTIPDGIKV---NVEENTRITVSGYDKSAIGQFAASIRK 195 (225)
Q Consensus 159 ~~~IP~~Vkv---~v~~~t~Iil~GiDKq~Vgq~AA~Ir~ 195 (225)
.+++|+.... ++.++++++++-.|-|++.+--|.||.
T Consensus 67 ~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 67 RLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 3566765444 446688999999999999999999974
No 50
>PRK14429 acylphosphatase; Provisional
Probab=25.57 E-value=13 Score=27.70 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=15.9
Q ss_pred eEEEEeccHHHHHHHHHHhhcc
Q 027306 175 RITVSGYDKSAIGQFAASIRKW 196 (225)
Q Consensus 175 ~Iil~GiDKq~Vgq~AA~Ir~~ 196 (225)
+|.++| +.+.|-+|.+.|++-
T Consensus 43 ei~~qG-~~~~i~~f~~~l~~g 63 (90)
T PRK14429 43 EILAQG-SDPAVDNLIAWCEVG 63 (90)
T ss_pred EEEEEe-CHHHHHHHHHHHhhC
Confidence 567777 556699999999863
No 51
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=24.18 E-value=1.8e+02 Score=19.10 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=19.1
Q ss_pred CcEEEEcc---CCeEEEEeccHHHHHHHHHHh
Q 027306 165 GIKVNVEE---NTRITVSGYDKSAIGQFAASI 193 (225)
Q Consensus 165 ~Vkv~v~~---~t~Iil~GiDKq~Vgq~AA~I 193 (225)
|+.+.+++ ...+.|+| +.+.|.+-.+.|
T Consensus 30 ~~~I~i~~~~~~~~v~I~G-~~~~v~~A~~~I 60 (60)
T PF00013_consen 30 GVKIQIPDDDERDIVTISG-SPEQVEKAKKMI 60 (60)
T ss_dssp TSEEEEESTTEEEEEEEEE-SHHHHHHHHHHH
T ss_pred CeEEEEcCCCCcEEEEEEe-CHHHHHHHHhhC
Confidence 44555554 35789999 999888766554
No 52
>PRK14435 acylphosphatase; Provisional
Probab=24.06 E-value=13 Score=27.90 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=16.4
Q ss_pred CeEEEEeccHHHHHHHHHHhhc
Q 027306 174 TRITVSGYDKSAIGQFAASIRK 195 (225)
Q Consensus 174 t~Iil~GiDKq~Vgq~AA~Ir~ 195 (225)
-+|.++|.+ +.|.+|.+.|++
T Consensus 42 Vei~~~G~~-~~i~~f~~~l~~ 62 (90)
T PRK14435 42 VFIHAEGDE-NALRRFLNEVAK 62 (90)
T ss_pred EEEEEEECH-HHHHHHHHHHhh
Confidence 467788844 669999999984
No 53
>PRK14433 acylphosphatase; Provisional
Probab=23.97 E-value=15 Score=27.41 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=29.7
Q ss_pred EEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhc
Q 027306 133 QMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRK 195 (225)
Q Consensus 133 ~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~ 195 (225)
++-|||||..+...-. +||.+--+ -++|+| .-+|.++|.+ +.|-+|...|++
T Consensus 10 ~VQGVGFR~~v~~~A~--~~~l~G~V-~N~~dG-------~Vei~~~G~~-~~i~~f~~~l~~ 61 (87)
T PRK14433 10 RVQGVGYRAFVQKKAR--ELGLSGYA-ENLSDG-------RVEVVAEGPK-EALERLLHWLRR 61 (87)
T ss_pred eeeCcCchHHHHHHHH--HcCCEEEE-EECCCC-------CEEEEEEECH-HHHHHHHHHHhh
Confidence 5678888876532111 12222221 344444 1357777766 589999999973
No 54
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=22.25 E-value=2.3e+02 Score=24.21 Aligned_cols=90 Identities=11% Similarity=0.175 Sum_probs=56.9
Q ss_pred CeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhccc--ccccceEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEEC
Q 027306 85 EVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVV--GVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTI 162 (225)
Q Consensus 85 ~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~--GVt~Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~I 162 (225)
++.++..+|.+.|......+..+..|..++++.+..=. +-.-.|+|.|.-+ ++... .++
T Consensus 26 ~~~v~~k~n~l~I~i~G~~~eike~~~~Ik~~~~~vr~k~~~~g~~~y~l~~i------------------~r~a~-~~v 86 (190)
T PF09840_consen 26 YIYVEVKGNSLKIEIQGYEKEIKEAIRRIKELVRRVRSKYNKRGLYRYSLDDI------------------FREAG-YPV 86 (190)
T ss_pred EEEEEEeCCEEEEEEecChHHHHHHHHHHHHHHHHHHHHhccCCceEEcHHHH------------------HHHcC-CCC
Confidence 45667778889888777666666666666665544211 1333444444433 21111 566
Q ss_pred CC----------CcEEEEccCCeEEEEeccHHHHHHHHHHhhc
Q 027306 163 PD----------GIKVNVEENTRITVSGYDKSAIGQFAASIRK 195 (225)
Q Consensus 163 P~----------~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~ 195 (225)
|+ |.+++..+. .+.+.++.+.|-++|..|-.
T Consensus 87 p~d~L~~~L~~~G~~ae~~~~--~i~T~a~~eev~~l~~~Lse 127 (190)
T PF09840_consen 87 PPDLLVDALKLLGYKAEYRED--VIKTDAPLEEVVELAERLSE 127 (190)
T ss_pred CHHHHHHHHHhCCCeeEEeCC--eEEecCCHHHHHHHHHHHHH
Confidence 64 677777766 67799999999999887653
No 55
>PRK14423 acylphosphatase; Provisional
Probab=22.02 E-value=20 Score=26.86 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=15.6
Q ss_pred eEEEEeccHHHHHHHHHHhhc
Q 027306 175 RITVSGYDKSAIGQFAASIRK 195 (225)
Q Consensus 175 ~Iil~GiDKq~Vgq~AA~Ir~ 195 (225)
+|.++|.+ +.|.+|...+++
T Consensus 46 ei~~~G~~-~~i~~f~~~l~~ 65 (92)
T PRK14423 46 EAVFEGPR-DAVEAMVEWCHE 65 (92)
T ss_pred EEEEEECH-HHHHHHHHHHHh
Confidence 67788854 579999999984
No 56
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=21.75 E-value=2.6e+02 Score=18.78 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=29.8
Q ss_pred CCCcEEEEeCCEEEEEeCC---e--EEEEEcCCC-----eEEEEeCCEEEEEec
Q 027306 57 PSNVTITLGGQDLKVKGPL---G--ELSLVYPRE-----VKVDREDSFLRVRKT 100 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl---G--~l~~~~~~~-----v~v~~~~~~i~v~~~ 100 (225)
++++.|.++++.++|+... + .+..+|++. ......++.+.|...
T Consensus 19 ~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~ 72 (84)
T cd06463 19 KKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLK 72 (84)
T ss_pred ccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEE
Confidence 6889999999988887654 2 466666654 334456777777543
No 57
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=21.48 E-value=1.4e+02 Score=21.76 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=8.8
Q ss_pred CEEEEEccceEeE
Q 027306 146 QVLVLSLGFSHPV 158 (225)
Q Consensus 146 n~L~l~LG~SH~i 158 (225)
+...++||++|..
T Consensus 57 dEFeI~LgrKhI~ 69 (71)
T PF14250_consen 57 DEFEIKLGRKHIH 69 (71)
T ss_pred CEEEEEeCcceEE
Confidence 4566778888743
No 58
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=21.35 E-value=4.9e+02 Score=21.73 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=38.5
Q ss_pred CcEEEEeCCEEEE-EeCCeEEEEEcCCCeEEEEeCC-EEEEEecccchhhhhHHHhHHHHHhh
Q 027306 59 NVTITLGGQDLKV-KGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 119 (225)
Q Consensus 59 ~V~v~i~~~~i~V-kGplG~l~~~~~~~v~v~~~~~-~i~v~~~~~~kk~~a~~GT~rsli~N 119 (225)
|-++.++++.|.+ =|=.-....++|..+.+...++ .|.++-.+ ++..|.+.|.|+.
T Consensus 92 gyrv~~~g~~l~l~LG~sh~i~~~Ip~~v~v~~~~~t~I~i~G~d-----ke~Vgq~AA~Ir~ 149 (175)
T TIGR03654 92 GYRAQLQGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGID-----KQLVGQVAAEIRA 149 (175)
T ss_pred EEEEEEeCCeEEEEecCceeEEEECCCCeEEEeCCCCEEEEEECC-----HHHHHHHHHHHhc
Confidence 4466666776655 3555567788888888887765 67776554 3567888888876
No 59
>PRK14451 acylphosphatase; Provisional
Probab=20.70 E-value=17 Score=27.24 Aligned_cols=21 Identities=14% Similarity=0.369 Sum_probs=16.5
Q ss_pred CeEEEEeccHHHHHHHHHHhhc
Q 027306 174 TRITVSGYDKSAIGQFAASIRK 195 (225)
Q Consensus 174 t~Iil~GiDKq~Vgq~AA~Ir~ 195 (225)
-+|.++| |.+.|.+|...+++
T Consensus 43 Vei~~qG-~~~~i~~f~~~l~~ 63 (89)
T PRK14451 43 VEVFACG-KEDKLEEFYTWLQK 63 (89)
T ss_pred EEEEEEE-CHHHHHHHHHHHhh
Confidence 3677888 55779999999984
No 60
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=20.54 E-value=1.2e+02 Score=20.81 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=5.2
Q ss_pred ecCCCcEEE
Q 027306 55 EVPSNVTIT 63 (225)
Q Consensus 55 ~IP~~V~v~ 63 (225)
.+|+||.++
T Consensus 9 ~~P~~v~l~ 17 (78)
T PF05137_consen 9 ALPEGVWLT 17 (78)
T ss_pred hCCCCEEEE
Confidence 356776554
No 61
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=20.48 E-value=5.1e+02 Score=21.63 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=38.6
Q ss_pred CcEEEEeCCEEEE-EeCCeEEEEEcCCCeEEEEeCC-EEEEEecccchhhhhHHHhHHHHHhh
Q 027306 59 NVTITLGGQDLKV-KGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 119 (225)
Q Consensus 59 ~V~v~i~~~~i~V-kGplG~l~~~~~~~v~v~~~~~-~i~v~~~~~~kk~~a~~GT~rsli~N 119 (225)
|-+++++++.|.+ =|=.-.....+|..+.+...++ .|.++-.+ +...|.+.|.|++
T Consensus 93 gyrv~~~g~~l~l~LG~sh~i~~~Ip~gv~v~~~~~t~I~i~G~d-----ke~Vg~~AA~Ir~ 150 (178)
T PRK05498 93 GYRAQVKGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGID-----KQLVGQVAAEIRS 150 (178)
T ss_pred EEEEEEeCCeEEEEecCCEEEEEECCCCeEEEeCCCCEEEEEECC-----HHHHHHHHHHHhc
Confidence 4466666776655 3555567788888888887665 57776554 4567888888877
No 62
>PRK14440 acylphosphatase; Provisional
Probab=20.18 E-value=18 Score=27.09 Aligned_cols=21 Identities=19% Similarity=0.588 Sum_probs=17.1
Q ss_pred CeEEEEeccHHHHHHHHHHhhc
Q 027306 174 TRITVSGYDKSAIGQFAASIRK 195 (225)
Q Consensus 174 t~Iil~GiDKq~Vgq~AA~Ir~ 195 (225)
-+|.+.|.+ +.|-+|...|++
T Consensus 43 Vei~~~G~~-~~v~~f~~~l~~ 63 (90)
T PRK14440 43 VEVVAEGYE-EALSKLLERIKQ 63 (90)
T ss_pred EEEEEEcCH-HHHHHHHHHHhh
Confidence 367888866 889999999984
Done!