Query 027306
Match_columns 225
No_of_seqs 154 out of 1083
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_I Ribosomal protein L6; l 100.0 1.1E-82 3.8E-87 550.1 10.9 222 1-225 1-223 (223)
2 1nkw_E 50S ribosomal protein L 100.0 1.8E-73 6E-78 489.2 23.5 183 42-224 24-206 (212)
3 3v2d_H 50S ribosomal protein L 100.0 1.7E-73 5.7E-78 479.9 19.4 180 46-225 1-180 (180)
4 1rl6_A Protein (ribosomal prot 100.0 1.2E-72 3.9E-77 473.6 19.2 176 47-222 1-176 (177)
5 3r8s_G 50S ribosomal protein L 100.0 4.2E-72 1.4E-76 469.9 15.0 176 47-222 1-176 (176)
6 2zjr_E 50S ribosomal protein L 100.0 1E-73 3.5E-78 482.7 0.3 179 46-224 1-179 (185)
7 1vq8_E 50S ribosomal protein L 100.0 7.1E-56 2.4E-60 371.7 19.2 164 51-218 3-173 (178)
8 3j21_F 50S ribosomal protein L 100.0 6.7E-53 2.3E-57 355.5 17.6 166 51-220 8-180 (184)
9 2zkr_e 60S ribosomal protein L 100.0 1E-51 3.6E-56 350.4 15.7 158 50-210 6-175 (192)
10 3iz5_F 60S ribosomal protein L 100.0 3.7E-50 1.3E-54 340.3 17.4 158 50-210 6-174 (190)
11 4a17_E RPL9, 60S ribosomal pro 100.0 3.1E-50 1E-54 340.3 14.8 158 50-210 6-173 (188)
12 3u5e_H L8, RP24, YL11, 60S rib 100.0 2.1E-49 7E-54 336.0 17.9 158 50-210 6-175 (191)
13 2cql_A OK/SW-CL.103, 60S ribos 99.9 4.2E-28 1.4E-32 186.1 8.1 88 44-131 6-98 (100)
14 4fei_A Heat shock protein-rela 72.9 7.1 0.00024 28.3 5.5 45 57-101 29-93 (102)
15 3gla_A Low molecular weight he 72.1 11 0.00038 26.9 6.4 44 57-100 27-95 (100)
16 3q9p_A Heat shock protein beta 67.9 9.4 0.00032 26.8 5.1 44 57-100 20-82 (85)
17 2cql_A OK/SW-CL.103, 60S ribos 63.7 5.4 0.00019 29.6 3.2 25 159-184 16-40 (100)
18 4eld_A MJ16.5-P1, small heat s 62.8 12 0.00042 29.3 5.4 45 57-101 79-149 (161)
19 2y1y_A Alpha-crystallin B chai 58.5 23 0.00079 24.9 5.7 45 57-101 19-82 (90)
20 2wj5_A Heat shock protein beta 57.8 23 0.00079 25.6 5.7 45 57-101 24-87 (101)
21 3j21_F 50S ribosomal protein L 52.8 74 0.0025 25.9 8.6 57 61-122 100-159 (184)
22 3l1e_A Alpha-crystallin A chai 52.2 31 0.0011 25.1 5.7 45 57-101 25-88 (106)
23 2zjr_E 50S ribosomal protein L 47.7 12 0.0004 30.8 2.9 22 54-75 115-137 (185)
24 1nkw_E 50S ribosomal protein L 46.9 14 0.00046 31.2 3.2 53 62-119 123-177 (212)
25 3aab_A Putative uncharacterize 44.7 54 0.0019 24.2 6.1 45 57-101 47-114 (123)
26 2zkr_e 60S ribosomal protein L 44.1 18 0.00062 29.8 3.6 43 73-120 119-164 (192)
27 1vq8_E 50S ribosomal protein L 44.1 75 0.0026 25.8 7.3 55 61-120 95-152 (178)
28 2klr_A Alpha-crystallin B chai 43.5 37 0.0012 27.3 5.3 45 57-101 86-149 (175)
29 3v2d_H 50S ribosomal protein L 38.8 17 0.00059 29.6 2.6 21 55-75 116-137 (180)
30 2bol_A TSP36, small heat shock 38.4 50 0.0017 29.1 5.7 45 57-101 125-187 (314)
31 3bbo_I Ribosomal protein L6; l 36.8 14 0.00048 31.3 1.8 54 61-119 138-193 (223)
32 1gme_A Heat shock protein 16.9 34.1 51 0.0017 25.5 4.6 45 57-101 66-136 (151)
33 3u5e_H L8, RP24, YL11, 60S rib 29.7 2.3E+02 0.0078 23.1 8.4 52 65-121 108-165 (191)
34 3iz5_F 60S ribosomal protein L 27.9 1.6E+02 0.0055 24.0 6.8 61 56-121 98-164 (190)
35 1x4m_A FAR upstream element bi 27.8 83 0.0028 22.2 4.5 30 175-205 63-93 (94)
36 4a17_E RPL9, 60S ribosomal pro 27.3 1.6E+02 0.0055 23.9 6.7 60 57-121 98-163 (188)
37 2bol_A TSP36, small heat shock 26.1 70 0.0024 28.1 4.6 19 57-75 247-265 (314)
38 1rl6_A Protein (ribosomal prot 25.6 2.6E+02 0.0089 22.4 7.9 57 59-120 92-150 (177)
39 4fqn_A Malcavernin; helical do 23.5 27 0.00094 25.9 1.1 17 182-198 30-46 (98)
40 2opv_A KHSRP protein; KH domai 23.5 1E+02 0.0036 21.1 4.3 31 165-196 44-82 (85)
No 1
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.1e-82 Score=550.07 Aligned_cols=222 Identities=78% Similarity=1.227 Sum_probs=178.3
Q ss_pred CcccccccccccccceeecccccccccccccccccccccccccccccccccCCeecCCCcEEEEeCCEEEEEeCCeEEEE
Q 027306 1 MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSL 80 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~ 80 (225)
||||++|+|+ +|++|+|+++.++.++.+.+..++++++++|+|||||++||.||+||+|+++++.|+|+||+|+|++
T Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mSrigk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~ 77 (223)
T 3bbo_I 1 MASSLVSSFQ---PRSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELAL 77 (223)
T ss_dssp --------------------------------------------CCCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEE
T ss_pred CcccccchhH---HHHHhccccccccccccccccccchhhhcccccccccccceecCCCCEEEEeCCEEEEECCCeEEEE
Confidence 8999999999 6999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred EcCCCeEE-EEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccccceEEEEEEEEEeEEEEEeCCEEEEEccceEeEE
Q 027306 81 VYPREVKV-DREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVR 159 (225)
Q Consensus 81 ~~~~~v~v-~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~ 159 (225)
+|++.+.+ +.+++.|.++.|+++++++++|||+||||+|||+|||+||+++|+|+|+||||.++|+.|+|+||||||+.
T Consensus 78 ~~~~~v~i~~~e~~~i~v~~~~~~k~~~a~~Gt~rslI~NMI~GVt~Gf~kkLelvGvGYra~~~G~~L~L~LG~SHpv~ 157 (223)
T 3bbo_I 78 TYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVK 157 (223)
T ss_dssp ECCSSCEEEECSSSCEEEECSSCCTTHHHHHHHHTTTTTHHHHHTTTCEEECEECCSTTCCEEECSSEEEECSSCSSCEE
T ss_pred EcCCCEEEEEecCCEEEEEcCCCcHHHHHHHHHHHHHhhcEEEeeccCcEEEEEEeeeceEEEecCCEEEEEeeCCccEE
Confidence 99999999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccCceeecCeEEEeccCcccCCC
Q 027306 160 MTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK 225 (225)
Q Consensus 160 ~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGKGI~y~~E~I~lK~gKk~kk~ 225 (225)
++||+||+++++++|+|+|+|+|||.||||||+||+||||||||||||+|.||+|+||+||++|||
T Consensus 158 ~~iP~GI~v~v~~~t~Iii~GiDKq~Vgq~AA~IR~~R~PEPYKGKGI~y~~E~I~rK~gK~~kkk 223 (223)
T 3bbo_I 158 MQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223 (223)
T ss_dssp EECCSSEEEECSSTTBCEEEESSSHHHHHHHHHTTSSSCCCTTTCCSCEETTCCCCCCCCCCSCCC
T ss_pred EECCCCeEEEeCCCCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCcEeECCeEEEEeccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999998776
No 2
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=1.8e-73 Score=489.17 Aligned_cols=183 Identities=47% Similarity=0.762 Sum_probs=179.4
Q ss_pred ccccccccccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcc
Q 027306 42 IECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMV 121 (225)
Q Consensus 42 ~~~~~Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI 121 (225)
.+|+|||||++||.||+||+|+++++.|+|+||+|+|+++|++.+.+..+++.|.++.|+++++++|+|||+||||+|||
T Consensus 24 ~~~~MSRIgk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~~v~i~~e~~~i~v~~~~~~k~~ra~~Gt~rslI~NMI 103 (212)
T 1nkw_E 24 KEDNMSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAV 103 (212)
T ss_pred cccccccccccceecCCCcEEEEeCCEEEEECCCEEEEEECCCCeEEEEECCEEEEEcCCCCHHHHHHHHHHHHHhhCEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCc
Q 027306 122 VGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEP 201 (225)
Q Consensus 122 ~GVt~Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~Pep 201 (225)
+|||+||+++|+|+|+||||.++|+.|+|+||||||+.++||+||+++++++|+|+|+|+|||.||||||+||+||||||
T Consensus 104 ~GVt~Gf~kkLelvGvGYra~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDKq~VGq~AA~IR~~R~PEP 183 (212)
T 1nkw_E 104 KGVSDGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDA 183 (212)
T ss_pred EeeccCeEEEEEEeeeeeEEEcCCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceeecCeEEEeccCcccCC
Q 027306 202 YKGKGVKYVDEVIRRKEGKAGKK 224 (225)
Q Consensus 202 YKGKGI~y~~E~I~lK~gKk~kk 224 (225)
||||||+|.||+|+||+||++|+
T Consensus 184 YKGKGIry~~E~I~rK~gK~~k~ 206 (212)
T 1nkw_E 184 YHGKGVRFVGEQIALKAGKAGAT 206 (212)
T ss_pred cCCCcEeECCeEEEEcCccccCC
Confidence 99999999999999999998765
No 3
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=1.7e-73 Score=479.88 Aligned_cols=180 Identities=48% Similarity=0.779 Sum_probs=172.8
Q ss_pred ccccccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccc
Q 027306 46 ESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVS 125 (225)
Q Consensus 46 ~Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt 125 (225)
|||||++||.||+||+|+++++.|+|+||+|+|+++|++.+.++.+++.|.++.|+++|+++|||||+||||+|||+|||
T Consensus 1 mSrigk~pI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt 80 (180)
T 3v2d_H 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVS 80 (180)
T ss_dssp -CCTTTSCEECCTTCEEEEETTEEEEECSSCEEEEECCTTSEEEEETTEEEEECSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCceeeCCCCcEEEEeCCEEEEEeCCcEEEEEeCCCEEEEEECCEEEEEECCCcHHHHHHHHHHHHHHhhhEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 027306 126 KGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 205 (225)
Q Consensus 126 ~Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGK 205 (225)
+||+|+|+++|+||||.++|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.||||||+||+||+|||||||
T Consensus 81 ~Gf~~kL~lvgvgyra~~~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke~Vgq~AA~Ir~~r~PepYKGK 160 (180)
T 3v2d_H 81 EGYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEK 160 (180)
T ss_dssp TCEEEEEEEESTTCEEEEETTEEEEECSSSSCEEECCCTTCEEECSSTTEEEEEESCHHHHHHHHHHHHHHTCCCSSSSC
T ss_pred CCcEEEEEEEEEeeEEEECCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHHHHHHHHHHhcccCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCeEEEeccCcccCCC
Q 027306 206 GVKYVDEVIRRKEGKAGKKK 225 (225)
Q Consensus 206 GI~y~~E~I~lK~gKk~kk~ 225 (225)
||||+||+|++|+||++|||
T Consensus 161 GIry~~e~I~~K~gK~~~k~ 180 (180)
T 3v2d_H 161 GIYYAGEPVRLKPGKAGAKK 180 (180)
T ss_dssp EEEETTCCCCCCCCC-----
T ss_pred cccCCCEEEEEeCccccCCC
Confidence 99999999999999998875
No 4
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=1.2e-72 Score=473.60 Aligned_cols=176 Identities=48% Similarity=0.880 Sum_probs=162.7
Q ss_pred cccccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhccccccc
Q 027306 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSK 126 (225)
Q Consensus 47 Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~ 126 (225)
||||++||.||+||+|+++++.|+|+||+|+|+++|++.+.+..+++.+.++.|+++++++|||||+||||+|||+|||+
T Consensus 1 srigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~ 80 (177)
T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 80 (177)
T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccceEcCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEeCCEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeEcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccCc
Q 027306 127 GFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKG 206 (225)
Q Consensus 127 Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGKG 206 (225)
||+++|+|+|+||||.++|+.|+|+||||||+.++||+||+++++++|+|+|+|+|||.||||||+||+|||||||||||
T Consensus 81 Gf~~~L~lvGvGyra~~~G~~l~l~LG~Shpv~~~iP~gi~v~v~~~t~I~v~G~Dkq~Vgq~AA~Ir~~R~PepYKGKG 160 (177)
T 1rl6_A 81 GYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKG 160 (177)
T ss_dssp CEEEEEEEESTTCEEEEETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCCE
T ss_pred CcEEEEEEEeeceEEEecCCEEEEEecCCccEEEeCCCCcEEEECCCCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCeEEEeccCccc
Q 027306 207 VKYVDEVIRRKEGKAG 222 (225)
Q Consensus 207 I~y~~E~I~lK~gKk~ 222 (225)
|+|.||+|+||+||++
T Consensus 161 I~y~~E~i~~K~gK~~ 176 (177)
T 1rl6_A 161 IRYEGELVRLKEGKTG 176 (177)
T ss_dssp EEETTCCCCC------
T ss_pred EeECCeEEEEcCccCC
Confidence 9999999999999986
No 5
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=4.2e-72 Score=469.87 Aligned_cols=176 Identities=47% Similarity=0.765 Sum_probs=173.7
Q ss_pred cccccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhccccccc
Q 027306 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSK 126 (225)
Q Consensus 47 Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~ 126 (225)
||||++||.||+||+|+++++.|+|+||+|+|+++|++.+.+..+++.|.++.|+++++++|||||+||||+|||+|||+
T Consensus 1 Srigk~pI~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~ 80 (176)
T 3r8s_G 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE 80 (176)
T ss_dssp CTTTTSCEECCTTCCCEESSSEEECCBTTBCCEEECCSSCEEEEETTEEEEECCTTCSSTHHHHHHHHHHHHHTTTHHHH
T ss_pred CCccccceeCCCCcEEEEeCCEEEEEcCCEEEEEECCCCEEEEEeCCEEEEEECCCcHHHHHHHHHHHHHHHhHhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccCc
Q 027306 127 GFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKG 206 (225)
Q Consensus 127 Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGKG 206 (225)
||+++|+++|+||||.++|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.||||||+||+|||||||||||
T Consensus 81 Gf~~kL~lvgvgyra~~~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke~Vgq~AA~Ir~~R~PepYKGKG 160 (176)
T 3r8s_G 81 GFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKG 160 (176)
T ss_dssp CEEECEEEESTTCEEECSSSEEEEECSSSSCEEEECCTTCEEEEEETTEEEEEESCHHHHHHHHHHHHHTTCCCSSSCCE
T ss_pred CeEEEEEEeeeeeEEEeCCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHHHHHHHHHHhhccCCCCCccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCeEEEeccCccc
Q 027306 207 VKYVDEVIRRKEGKAG 222 (225)
Q Consensus 207 I~y~~E~I~lK~gKk~ 222 (225)
|+|.||+|+||+|||+
T Consensus 161 I~y~~E~i~~K~gKkk 176 (176)
T 3r8s_G 161 VRYADEVVRTKEAKKK 176 (176)
T ss_dssp EEESSCCCCCCCCCCC
T ss_pred eeECCeEEEeccccCC
Confidence 9999999999999974
No 6
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=1e-73 Score=482.73 Aligned_cols=179 Identities=47% Similarity=0.780 Sum_probs=169.1
Q ss_pred ccccccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccc
Q 027306 46 ESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVS 125 (225)
Q Consensus 46 ~Srigk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt 125 (225)
|||||++||.||+||+|+++++.|+|+||+|+|+++|++.+.++.+++.|.++.|+++++++|||||+||||+|||+|||
T Consensus 1 mSrigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~GVt 80 (185)
T 2zjr_E 1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS 80 (185)
T ss_dssp ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEeCCEEEEECCCCCHHHHHHHHHHHHHhhcEEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEEEeEEEEEeCCEEEEEccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 027306 126 KGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 205 (225)
Q Consensus 126 ~Gf~~kL~lvGvGYra~~~gn~L~l~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGK 205 (225)
+||+++|+|+|+||||.++|+.|+|+||||||+.++||+||+++++++|+|+|+|+|||.||||||+||+||||||||||
T Consensus 81 ~Gf~kkL~lvGvGYra~~~G~~l~l~LG~Shpv~~~iP~gI~v~v~~~t~I~l~G~DKq~Vgq~AA~Ir~~R~PepYKGK 160 (185)
T 2zjr_E 81 DGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGK 160 (185)
T ss_dssp HCEEEEEECBSTTCCCCCBTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCC
T ss_pred cCcEEEEEEeeeccEEEEcCCEEEEEeeCCccEEEECCCCeEEEECCCCEEEEEecCHHHHHHHHHHHhccCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCeEEEeccCcccCC
Q 027306 206 GVKYVDEVIRRKEGKAGKK 224 (225)
Q Consensus 206 GI~y~~E~I~lK~gKk~kk 224 (225)
||+|.||+|+||+||++|+
T Consensus 161 GI~y~~E~i~~K~gK~~k~ 179 (185)
T 2zjr_E 161 GVRFVGEQIALKAGKAGAT 179 (185)
T ss_dssp BCCCSSCCCCCCCCC----
T ss_pred cEeECCeEEEEcCccccCC
Confidence 9999999999999998764
No 7
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=7.1e-56 Score=371.74 Aligned_cols=164 Identities=26% Similarity=0.387 Sum_probs=158.3
Q ss_pred cCCeecCCCcEEEEeCCEEEEEeCCeEEEEEc-CCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccccceE
Q 027306 51 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVY-PREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFE 129 (225)
Q Consensus 51 k~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~-~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~Gf~ 129 (225)
.+||.||+||+|+++++.|+|+||+|+|+++| +..+.+..+++.+.++.|+++|+++|+|||+||||+|||+|||+||+
T Consensus 3 ~~pI~IP~gV~v~i~~~~vtVkGpkG~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~ 82 (178)
T 1vq8_E 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWE 82 (178)
T ss_dssp EEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred cccEEcCCCCEEEEeCCEEEEECCCeEEEEEEECCeEEEEEECCEEEEEcCCCCHHHHHHHHHHHHHHcCEEEEEccCeE
Confidence 36999999999999999999999999999999 66899999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeE--EEEEeCCEEEE--EccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 027306 130 KKLQMVGVGY--RAALEGQVLVL--SLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 205 (225)
Q Consensus 130 ~kL~lvGvGY--ra~~~gn~L~l--~LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGK 205 (225)
|+|+++|+|| ||.++|+.|.| +||||||+.++||+||++++++ |+|+|+|+|||.||||||+||++|+| |||
T Consensus 83 ~~L~ivGvGypira~~~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~-~~I~v~G~Dkq~Vgq~AA~Ir~~r~p---KGK 158 (178)
T 1vq8_E 83 YGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDG-EELTVSGPDIEAVGQTAADIEQLTRI---NDK 158 (178)
T ss_dssp EEEEEECSSSCCEEEEETTEEEEESGGGCSSCEEEECCTTCEEEEET-TEEEEEESCHHHHHHHHHHHHHTTCC---SSS
T ss_pred EEEEEEeeCCceEEEEcCCEEEEEccccccccEEEeCCCCeEEEEeC-CEEEEEECCHHHHHHHHHHHhccCCC---CCC
Confidence 9999999999 99999999999 8999999999999999999998 89999999999999999999999999 999
Q ss_pred ce--eecCeEEEecc
Q 027306 206 GV--KYVDEVIRRKE 218 (225)
Q Consensus 206 GI--~y~~E~I~lK~ 218 (225)
|| |.+|++|.-|.
T Consensus 159 GIr~F~DGiyi~~k~ 173 (178)
T 1vq8_E 159 DVRVFQDGVYITRKP 173 (178)
T ss_dssp CTTTCCCEEEEEECC
T ss_pred ceeEEECCEEEEecc
Confidence 99 78899998773
No 8
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=6.7e-53 Score=355.51 Aligned_cols=166 Identities=30% Similarity=0.465 Sum_probs=157.2
Q ss_pred cCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcC-CCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhcccccccceE
Q 027306 51 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYP-REVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFE 129 (225)
Q Consensus 51 k~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~-~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~Gf~ 129 (225)
+.||.||+||+|+++++.|+|+||+|+|+++|+ ..+.++.+++.+.++.|+++|+++|||||+|||++|||+|||+||+
T Consensus 8 ~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf~ 87 (184)
T 3j21_F 8 REEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVVIYKDFPRRKDVAIARTFAAHIRNMIKGVTEGFT 87 (184)
T ss_dssp EEEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEEEETTEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred eEEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEEEeCCEEEEEECCCCHHHHHHHHHHHHHHHhhheeeccCeE
Confidence 569999999999999999999999999999996 5799999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeE--EEEEeCCEEEEE--ccceEeEEEECCCCcEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 027306 130 KKLQMVGVGY--RAALEGQVLVLS--LGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 205 (225)
Q Consensus 130 ~kL~lvGvGY--ra~~~gn~L~l~--LG~SH~i~~~IP~~Vkv~v~~~t~Iil~GiDKq~Vgq~AA~Ir~~R~PepYKGK 205 (225)
|+|+++|+|| ||.++|+.|.|. ||||||+.++||+||+++++++ +|+|+|+|||.|||+||+||++++ ||||
T Consensus 88 ~kL~lvgvgypira~~~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~~-~Iil~G~Dke~Vgq~AA~Ir~~~~---vK~K 163 (184)
T 3j21_F 88 YKLKVVYSHFPISVKVQGDEVIIENFLGEKAPRKAKILPGVTVKVRGQ-EIIVEGIDKEAVGQTAANIEQATR---ITKW 163 (184)
T ss_dssp EEEEEECSSSCCEEEEETTEEEEECGGGCSSCEEEECCTTEEEEEETT-EEEEEESCHHHHHHHHHHHHHHHC---CCSS
T ss_pred EEEEEEEecccceEEEcCCEEEEEecCCccccEEEECCCCeEEEecCC-EEEEEECCHHHHHHHHHHHhhccc---cCCC
Confidence 9999999999 999999999885 9999999999999999999986 999999999999999999999995 9999
Q ss_pred ceee--cCeEEEeccCc
Q 027306 206 GVKY--VDEVIRRKEGK 220 (225)
Q Consensus 206 GI~y--~~E~I~lK~gK 220 (225)
+||+ ++-+|.-|.||
T Consensus 164 DiR~F~DGiyv~ek~~~ 180 (184)
T 3j21_F 164 DRRIFQDGIYIVEKAGK 180 (184)
T ss_dssp CSSSCCCEEEESCSSSC
T ss_pred cccEeeCCEEEEecCcc
Confidence 9998 46677777665
No 9
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1e-51 Score=350.35 Aligned_cols=158 Identities=26% Similarity=0.383 Sum_probs=147.6
Q ss_pred ccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEEEeCCE---EEEEecccchhhhhHHHhHHHHHhhcccccc
Q 027306 50 GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDREDSF---LRVRKTVETRRANQMHGLFRTLTDNMVVGVS 125 (225)
Q Consensus 50 gk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~-~v~v~~~~~~---i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt 125 (225)
.++||.||+||+|+++++.|+|+||+|+|+++|++ .+.++.+++. +.++.|+++++++|+|||+||||+|||.|||
T Consensus 6 ~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~NmI~GVt 85 (192)
T 2zkr_e 6 SNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVT 85 (192)
T ss_dssp ----CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEETTTTCEEEEECSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEEEecCceeEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeec
Confidence 47799999999999999999999999999999998 7999999998 9999999999999999999999999999999
Q ss_pred cceEEEEEEEEEeEEEE--E--eCCEEEE--EccceEeEEEECCCCcEEEEccC--CeEEEEeccHHHHHHHHHHhhccC
Q 027306 126 KGFEKKLQMVGVGYRAA--L--EGQVLVL--SLGFSHPVRMTIPDGIKVNVEEN--TRITVSGYDKSAIGQFAASIRKWR 197 (225)
Q Consensus 126 ~Gf~~kL~lvGvGYra~--~--~gn~L~l--~LG~SH~i~~~IP~~Vkv~v~~~--t~Iil~GiDKq~Vgq~AA~Ir~~R 197 (225)
+||+++|+|+|+||||. + +|+.|.| +||||||+.++||+||+++++++ |+|+|+|+|||.||||||+||+++
T Consensus 86 ~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~Vgq~AA~IR~~~ 165 (192)
T 2zkr_e 86 LGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQAT 165 (192)
T ss_dssp TCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHHHHHHHHHHhhC
Confidence 99999999999999987 8 5778999 89999999999999999999987 999999999999999999999999
Q ss_pred CCCccccCceeec
Q 027306 198 PPEPYKGKGVKYV 210 (225)
Q Consensus 198 ~PepYKGKGI~y~ 210 (225)
++ |+|+||-+
T Consensus 166 ~v---k~kD~R~F 175 (192)
T 2zkr_e 166 TV---KNKDIRKF 175 (192)
T ss_dssp CC---SSSCTTTC
T ss_pred cC---CCCCccEe
Confidence 87 99998754
No 10
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=100.00 E-value=3.7e-50 Score=340.27 Aligned_cols=158 Identities=20% Similarity=0.343 Sum_probs=149.0
Q ss_pred ccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEEE--eCCEEEEEecccchhhhhHHHhHHHHHhhccccccc
Q 027306 50 GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDR--EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSK 126 (225)
Q Consensus 50 gk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~-~v~v~~--~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~ 126 (225)
.++||.||+||+|+++++.|+|+||+|+|+++|++ .+.+.. +++.+.+..|+++|+++|||||+|||++|||+|||+
T Consensus 6 ~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~ 85 (190)
T 3iz5_F 6 ASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTK 85 (190)
T ss_dssp CCEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTEEEEEETTTTEEEEEESCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCccEECCCCCEEEEeCCEEEEECCCceEEEEccCCcEEEEEEcCCCEEEEEECCCCHHHHHHHHHHHHHHHhheeeecc
Confidence 46799999999999999999999999999999974 689988 889999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEeEEEEE----eCCEEEEE--ccceEeEEEECCCCcEEEEccC--CeEEEEeccHHHHHHHHHHhhccCC
Q 027306 127 GFEKKLQMVGVGYRAAL----EGQVLVLS--LGFSHPVRMTIPDGIKVNVEEN--TRITVSGYDKSAIGQFAASIRKWRP 198 (225)
Q Consensus 127 Gf~~kL~lvGvGYra~~----~gn~L~l~--LG~SH~i~~~IP~~Vkv~v~~~--t~Iil~GiDKq~Vgq~AA~Ir~~R~ 198 (225)
||+|+|+++|+||||.+ +|+.|.|+ ||||||+.++||+||+++++++ |+|+|+|+|||.||||||+||+.+
T Consensus 86 Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~Dke~Vgq~AA~Irq~~- 164 (190)
T 3iz5_F 86 GYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKC- 164 (190)
T ss_dssp CEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESCHHHHHHHHHHHHHHT-
T ss_pred CEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECCHHHHHHHHHHHHhhc-
Confidence 99999999999999655 68899997 9999999999999999999987 799999999999999999999999
Q ss_pred CCccccCceeec
Q 027306 199 PEPYKGKGVKYV 210 (225)
Q Consensus 199 PepYKGKGI~y~ 210 (225)
.+|+|+||-+
T Consensus 165 --~vk~kD~R~F 174 (190)
T 3iz5_F 165 --HVKNKDIRKF 174 (190)
T ss_dssp --CCCSSCTTTC
T ss_pred --cccCCcccEe
Confidence 5899999854
No 11
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=100.00 E-value=3.1e-50 Score=340.32 Aligned_cols=158 Identities=21% Similarity=0.379 Sum_probs=148.6
Q ss_pred ccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEEE-eCCEEEEEecccchhhhhHHHhHHHHHhhcccccccc
Q 027306 50 GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDR-EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKG 127 (225)
Q Consensus 50 gk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~-~v~v~~-~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~G 127 (225)
.++||.||+||+|+++++.|+|+||+|+|+++|++ .+.+.. +++.+.++.|+++|+++|||||+|||++|||+|||+|
T Consensus 6 ~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~G 85 (188)
T 4a17_E 6 TEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADNVKLQIWQASRKERAVLQSIASQIKNMIRGVTEG 85 (188)
T ss_dssp EEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEECCCBTTBCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEccCCeEEEEECCCCHHHHHHHHHHHHHHHhheEeeccC
Confidence 35799999999999999999999999999999987 689888 8899999999999999999999999999999999999
Q ss_pred eEEEEEEEEEeEEEE--E--eCCEEEEE--ccceEeEEEECCCCcEEEEccC--CeEEEEeccHHHHHHHHHHhhccCCC
Q 027306 128 FEKKLQMVGVGYRAA--L--EGQVLVLS--LGFSHPVRMTIPDGIKVNVEEN--TRITVSGYDKSAIGQFAASIRKWRPP 199 (225)
Q Consensus 128 f~~kL~lvGvGYra~--~--~gn~L~l~--LG~SH~i~~~IP~~Vkv~v~~~--t~Iil~GiDKq~Vgq~AA~Ir~~R~P 199 (225)
|+|+|+++|+||||. + +|+.|.|+ ||||||+.++||+||+++++++ |+|+|+|+|||.||||||+||+.+
T Consensus 86 f~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~Dke~Vgq~AA~Ir~~~-- 163 (188)
T 4a17_E 86 YKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSC-- 163 (188)
T ss_dssp EEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESCHHHHHHHHHHHHHHT--
T ss_pred eEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcCHHHHHHHHHHHHhhc--
Confidence 999999999999955 4 57789995 9999999999999999999998 899999999999999999999999
Q ss_pred CccccCceeec
Q 027306 200 EPYKGKGVKYV 210 (225)
Q Consensus 200 epYKGKGI~y~ 210 (225)
.+|+|+||-+
T Consensus 164 -~vk~kD~R~F 173 (188)
T 4a17_E 164 -LVKEKDIRQF 173 (188)
T ss_dssp -CCCSSCHHHH
T ss_pred -ccCCCcccEe
Confidence 6899999844
No 12
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=100.00 E-value=2.1e-49 Score=335.98 Aligned_cols=158 Identities=24% Similarity=0.412 Sum_probs=148.4
Q ss_pred ccCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEE-EeCCEEEEEecccchhhhhHHHhHHHHHhhcccccccc
Q 027306 50 GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVD-REDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKG 127 (225)
Q Consensus 50 gk~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~~-~v~v~-~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~GVt~G 127 (225)
.++||.||+||+|+++++.|+|+||+|+|+++|++ .+.++ .+++.+.+..|+++|+++|||||+|||++|||+|||+|
T Consensus 6 ~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~G 85 (191)
T 3u5e_H 6 TEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKG 85 (191)
T ss_dssp EEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEEecCCeEEEEECCCCHHHHHHHHHHHHHHHhheeeeccC
Confidence 35799999999999999999999999999999987 57777 67999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEeEE--EEE----eCCEEEEE--ccceEeEEEECCCCcEEEEccC--CeEEEEeccHHHHHHHHHHhhccC
Q 027306 128 FEKKLQMVGVGYR--AAL----EGQVLVLS--LGFSHPVRMTIPDGIKVNVEEN--TRITVSGYDKSAIGQFAASIRKWR 197 (225)
Q Consensus 128 f~~kL~lvGvGYr--a~~----~gn~L~l~--LG~SH~i~~~IP~~Vkv~v~~~--t~Iil~GiDKq~Vgq~AA~Ir~~R 197 (225)
|+|+|+++|+||| |.+ +|+.|.|+ ||||||+.++||+||+++++++ |+|+|+|+|||.||||||+||+.+
T Consensus 86 f~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vgq~AA~Irq~~ 165 (191)
T 3u5e_H 86 YKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQIC 165 (191)
T ss_dssp EEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHHHHHHHHHHTT
T ss_pred EEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHhhc
Confidence 9999999999998 677 78899995 9999999999999999999986 999999999999999999999999
Q ss_pred CCCccccCceeec
Q 027306 198 PPEPYKGKGVKYV 210 (225)
Q Consensus 198 ~PepYKGKGI~y~ 210 (225)
-+|+|.||-+
T Consensus 166 ---~vk~kD~R~F 175 (191)
T 3u5e_H 166 ---RVRNKDIRKF 175 (191)
T ss_dssp ---CCCSSCTTTC
T ss_pred ---ccCCCcccEe
Confidence 6899999844
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.95 E-value=4.2e-28 Score=186.12 Aligned_cols=88 Identities=30% Similarity=0.362 Sum_probs=83.3
Q ss_pred ccccccc-cCCeecCCCcEEEEeCCEEEEEeCCeEEEEEcC-CCeEEEEeCCE---EEEEecccchhhhhHHHhHHHHHh
Q 027306 44 CKESRIG-KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYP-REVKVDREDSF---LRVRKTVETRRANQMHGLFRTLTD 118 (225)
Q Consensus 44 ~~~Srig-k~~I~IP~~V~v~i~~~~i~VkGplG~l~~~~~-~~v~v~~~~~~---i~v~~~~~~kk~~a~~GT~rsli~ 118 (225)
..|+||+ ++||.||+||+|+++++.|+|+||+|+|+++|+ +.+.++.+++. |.+..|+++|+++|+|||+||||+
T Consensus 6 ~~Mk~i~~k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~h~~v~i~~e~~~~~~i~v~~~~~~k~~ra~~Gt~RslI~ 85 (100)
T 2cql_A 6 SGMKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQ 85 (100)
T ss_dssp SSCCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHHHH
T ss_pred cccccccccCcEEcCCCCEEEEeCCEEEEECCCceEEEEeccCcEEEEEcCCceeEEEEEccCCCHHHHHHHHHHHHHHH
Confidence 4699999 899999999999999999999999999999999 68999998776 999999999999999999999999
Q ss_pred hcccccccceEEE
Q 027306 119 NMVVGVSKGFEKK 131 (225)
Q Consensus 119 NmI~GVt~Gf~~k 131 (225)
|||+|||+||+|.
T Consensus 86 NMI~GVt~Gf~y~ 98 (100)
T 2cql_A 86 NMIKGVTLGSGPS 98 (100)
T ss_dssp HHHHHHHTSCCSC
T ss_pred hhhEeecCCEEEc
Confidence 9999999999874
No 14
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=72.94 E-value=7.1 Score=28.31 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=33.4
Q ss_pred CCCcEEEEeCCEEEEEeC-------------CeEEEEEc--CC-----CeEEEEeCCEEEEEecc
Q 027306 57 PSNVTITLGGQDLKVKGP-------------LGELSLVY--PR-----EVKVDREDSFLRVRKTV 101 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGp-------------lG~l~~~~--~~-----~v~v~~~~~~i~v~~~~ 101 (225)
|++++|+++++.|+|+|- .|...+.| |. .+.-..++|.|.|....
T Consensus 29 ~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~GvL~I~lpK 93 (102)
T 4fei_A 29 AGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAGGVLTVRFEK 93 (102)
T ss_dssp GGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEETTEEEEEEEB
T ss_pred hHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEECCEEEEEEEc
Confidence 589999999999999984 36666554 43 35666788988887553
No 15
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=72.08 E-value=11 Score=26.89 Aligned_cols=44 Identities=18% Similarity=0.424 Sum_probs=32.0
Q ss_pred CCCcEEEEeCCEEEEEeC------------------CeEEEEE--cCC-----CeEEEEeCCEEEEEec
Q 027306 57 PSNVTITLGGQDLKVKGP------------------LGELSLV--YPR-----EVKVDREDSFLRVRKT 100 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGp------------------lG~l~~~--~~~-----~v~v~~~~~~i~v~~~ 100 (225)
|++++|+++++.|+|+|- .|...+. ||. .+.-..++|.|.|...
T Consensus 27 ~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 95 (100)
T 3gla_A 27 PSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAGRNGVLEIRIP 95 (100)
T ss_dssp GGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEEEETTEEEEEEE
T ss_pred HHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEEEeCCEEEEEEe
Confidence 589999999999999984 3455544 443 3566678898888754
No 16
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=67.88 E-value=9.4 Score=26.81 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=31.5
Q ss_pred CCCcEEEEeCCEEEEEeCC-----------eEEEEEc--CCC-----eEEEEe-CCEEEEEec
Q 027306 57 PSNVTITLGGQDLKVKGPL-----------GELSLVY--PRE-----VKVDRE-DSFLRVRKT 100 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl-----------G~l~~~~--~~~-----v~v~~~-~~~i~v~~~ 100 (225)
|++++|+++++.|+|+|-. |+..+.| |.. +.-... +|.|.|...
T Consensus 20 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lP 82 (85)
T 3q9p_A 20 PDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP 82 (85)
T ss_dssp CSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEE
Confidence 6899999999999999963 5555554 332 455566 788877654
No 17
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=63.72 E-value=5.4 Score=29.56 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=20.1
Q ss_pred EEECCCCcEEEEccCCeEEEEeccHH
Q 027306 159 RMTIPDGIKVNVEENTRITVSGYDKS 184 (225)
Q Consensus 159 ~~~IP~~Vkv~v~~~t~Iil~GiDKq 184 (225)
.+.||+||+|++.++ .|+++|.-=+
T Consensus 16 pI~IP~gV~V~i~~~-~VtVKGPkG~ 40 (100)
T 2cql_A 16 TVDIPENVDITLKGR-TVIVKGPRGT 40 (100)
T ss_dssp EECCCSSCEEEEETT-EEEEEETTEE
T ss_pred cEEcCCCCEEEEeCC-EEEEECCCce
Confidence 468999999999865 7899997633
No 18
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=62.82 E-value=12 Score=29.29 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCCcEEEEeCCEEEEEeC-------------------CeEEEEE--cCCC-----eEEEEeCCEEEEEecc
Q 027306 57 PSNVTITLGGQDLKVKGP-------------------LGELSLV--YPRE-----VKVDREDSFLRVRKTV 101 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGp-------------------lG~l~~~--~~~~-----v~v~~~~~~i~v~~~~ 101 (225)
|++|+|+++++.|+|+|- .|...+. ||.. +.-..+||.|.|....
T Consensus 79 ~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lpK 149 (161)
T 4eld_A 79 KEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPK 149 (161)
T ss_dssp GGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEEETTEEEEEEEB
T ss_pred hHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEEECCEEEEEEEc
Confidence 479999999999999983 3555544 4432 5556789999887654
No 19
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=58.50 E-value=23 Score=24.89 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=31.4
Q ss_pred CCCcEEEEeCCEEEEEeCCeE-----------E--EEEcCCC-----eEEEE-eCCEEEEEecc
Q 027306 57 PSNVTITLGGQDLKVKGPLGE-----------L--SLVYPRE-----VKVDR-EDSFLRVRKTV 101 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGplG~-----------l--~~~~~~~-----v~v~~-~~~~i~v~~~~ 101 (225)
|++++|+++++.|+|+|-.-. . ++.||.. +.-.. ++|.|.|....
T Consensus 19 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~pK 82 (90)
T 2y1y_A 19 PEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPR 82 (90)
T ss_dssp GGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEECB
T ss_pred HHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEc
Confidence 588999999999999997532 2 3345533 45567 68888876543
No 20
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=57.81 E-value=23 Score=25.56 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=32.9
Q ss_pred CCCcEEEEeCCEEEEEeCCeE-------------EEEEcCCC-----eEEEE-eCCEEEEEecc
Q 027306 57 PSNVTITLGGQDLKVKGPLGE-------------LSLVYPRE-----VKVDR-EDSFLRVRKTV 101 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGplG~-------------l~~~~~~~-----v~v~~-~~~~i~v~~~~ 101 (225)
|++++|+++++.|+|+|-... -++.||.. +.-.. ++|.|.|....
T Consensus 24 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I~lPK 87 (101)
T 2wj5_A 24 PEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATP 87 (101)
T ss_dssp GGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEEEECB
T ss_pred HHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEEEEEC
Confidence 588999999999999997643 23455532 56667 68888887543
No 21
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.79 E-value=74 Score=25.90 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=44.0
Q ss_pred EEEEeCCEEEEE---eCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhccc
Q 027306 61 TITLGGQDLKVK---GPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVV 122 (225)
Q Consensus 61 ~v~i~~~~i~Vk---GplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~NmI~ 122 (225)
++.++++.|.+. |=.--...++|..+.+...++.|.++-.+ ++..|.+.|.|++.-.
T Consensus 100 ra~~~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~~~Iil~G~D-----ke~Vgq~AA~Ir~~~~ 159 (184)
T 3j21_F 100 SVKVQGDEVIIENFLGEKAPRKAKILPGVTVKVRGQEIIVEGID-----KEAVGQTAANIEQATR 159 (184)
T ss_dssp EEEEETTEEEEECGGGCSSCEEEECCTTEEEEEETTEEEEEESC-----HHHHHHHHHHHHHHHC
T ss_pred eEEEcCCEEEEEecCCccccEEEECCCCeEEEecCCEEEEEECC-----HHHHHHHHHHHhhccc
Confidence 556678888886 76677888899899998888888777554 4678888888888654
No 22
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=52.25 E-value=31 Score=25.09 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=31.3
Q ss_pred CCCcEEEEeCCEEEEEeCCe-------E----EE--EEcCC-----CeEEEE-eCCEEEEEecc
Q 027306 57 PSNVTITLGGQDLKVKGPLG-------E----LS--LVYPR-----EVKVDR-EDSFLRVRKTV 101 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGplG-------~----l~--~~~~~-----~v~v~~-~~~~i~v~~~~ 101 (225)
|++++|+++++.|+|+|-.. . .. +.||. .+.-.. ++|.|.|....
T Consensus 25 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I~~PK 88 (106)
T 3l1e_A 25 PEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPK 88 (106)
T ss_dssp GGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEEEEEB
T ss_pred hHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEc
Confidence 58999999999999999542 1 22 23442 256667 68888887543
No 23
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=47.65 E-value=12 Score=30.81 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=15.9
Q ss_pred eecCCCcEEEEeCC-EEEEEeCC
Q 027306 54 IEVPSNVTITLGGQ-DLKVKGPL 75 (225)
Q Consensus 54 I~IP~~V~v~i~~~-~i~VkGpl 75 (225)
++||+||++++.++ .|+++|..
T Consensus 115 ~~iP~gI~v~v~~~t~I~l~G~D 137 (185)
T 2zjr_E 115 IEPPAGVTFAVPEPTRIDVSGID 137 (185)
T ss_dssp CCCCTTEEEECSSTTEEEEEESS
T ss_pred EECCCCeEEEECCCCEEEEEecC
Confidence 37888888887654 67777753
No 24
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=46.87 E-value=14 Score=31.20 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=27.2
Q ss_pred EEEeCCEEEEE-eCCeEEEEEcCCCeEEEEeC-CEEEEEecccchhhhhHHHhHHHHHhh
Q 027306 62 ITLGGQDLKVK-GPLGELSLVYPREVKVDRED-SFLRVRKTVETRRANQMHGLFRTLTDN 119 (225)
Q Consensus 62 v~i~~~~i~Vk-GplG~l~~~~~~~v~v~~~~-~~i~v~~~~~~kk~~a~~GT~rsli~N 119 (225)
+.++++.|.+. |=.--...++|..|+++..+ +.|.++-.+ ++..|.+.|.|++
T Consensus 123 a~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiD-----Kq~VGq~AA~IR~ 177 (212)
T 1nkw_E 123 AKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGID-----KQLVGQVAANVRK 177 (212)
T ss_pred EEcCCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCC-----HHHHHHHHHHHhc
Confidence 33444444333 55555666666666665544 355554333 3455666666654
No 25
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=44.66 E-value=54 Score=24.20 Aligned_cols=45 Identities=13% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCCcEEEEeC-CEEEEEeCCe--------------EE--EEEcCC-----Ce-EEEEeCCEEEEEecc
Q 027306 57 PSNVTITLGG-QDLKVKGPLG--------------EL--SLVYPR-----EV-KVDREDSFLRVRKTV 101 (225)
Q Consensus 57 P~~V~v~i~~-~~i~VkGplG--------------~l--~~~~~~-----~v-~v~~~~~~i~v~~~~ 101 (225)
|++++|++++ +.|+|+|-.- .. +..||. .+ .-..++|.|.|....
T Consensus 47 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~~GvL~I~lPK 114 (123)
T 3aab_A 47 KEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPI 114 (123)
T ss_dssp GGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEEETTEEEEEEEG
T ss_pred HHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEcCCEEEEEEEc
Confidence 4789999999 9999999842 22 345553 35 667788988887653
No 26
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=44.09 E-value=18 Score=29.80 Aligned_cols=43 Identities=9% Similarity=-0.075 Sum_probs=19.0
Q ss_pred eCCeEEEEEcCCCeEEEEeC---CEEEEEecccchhhhhHHHhHHHHHhhc
Q 027306 73 GPLGELSLVYPREVKVDRED---SFLRVRKTVETRRANQMHGLFRTLTDNM 120 (225)
Q Consensus 73 GplG~l~~~~~~~v~v~~~~---~~i~v~~~~~~kk~~a~~GT~rsli~Nm 120 (225)
|=.--...++|..+.+...+ +.|.++-.+ ++..|.+.|.|+..
T Consensus 119 G~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiD-----Kq~Vgq~AA~IR~~ 164 (192)
T 2zkr_e 119 GEKYIRRVRMRPGVACSVSQAQKDELILEGND-----IELVSNSAALIQQA 164 (192)
T ss_dssp GCSSCEEEECCSSCEEEECSSCSSEEEEEESC-----HHHHHHHHHHHHHH
T ss_pred CCcccEEeeCCCCeEEEEcCCCCCEEEEEeCC-----HHHHHHHHHHHHhh
Confidence 33344444444444444332 234443332 34455555555553
No 27
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=44.08 E-value=75 Score=25.76 Aligned_cols=55 Identities=11% Similarity=0.162 Sum_probs=41.3
Q ss_pred EEEEeCCEEEEE---eCCeEEEEEcCCCeEEEEeCCEEEEEecccchhhhhHHHhHHHHHhhc
Q 027306 61 TITLGGQDLKVK---GPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNM 120 (225)
Q Consensus 61 ~v~i~~~~i~Vk---GplG~l~~~~~~~v~v~~~~~~i~v~~~~~~kk~~a~~GT~rsli~Nm 120 (225)
++.++++.|.++ |=.--...++|..++++..++.|.++-.+ ++..|.+.|.|+..
T Consensus 95 ra~~~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~~~I~v~G~D-----kq~Vgq~AA~Ir~~ 152 (178)
T 1vq8_E 95 QVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPD-----IEAVGQTAADIEQL 152 (178)
T ss_dssp EEEEETTEEEEESGGGCSSCEEEECCTTCEEEEETTEEEEEESC-----HHHHHHHHHHHHHT
T ss_pred EEEEcCCEEEEEccccccccEEEeCCCCeEEEEeCCEEEEEECC-----HHHHHHHHHHHhcc
Confidence 677788888885 44445688888888888777888887554 46788888888875
No 28
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=43.51 E-value=37 Score=27.29 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=32.3
Q ss_pred CCCcEEEEeCCEEEEEeCCeE-------------EEEEcCCC-----eEEEE-eCCEEEEEecc
Q 027306 57 PSNVTITLGGQDLKVKGPLGE-------------LSLVYPRE-----VKVDR-EDSFLRVRKTV 101 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGplG~-------------l~~~~~~~-----v~v~~-~~~~i~v~~~~ 101 (225)
|++|+|+++++.|+|+|-..+ -++.||.. +.-.. ++|.|.|....
T Consensus 86 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I~lPK 149 (175)
T 2klr_A 86 PEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 149 (175)
T ss_dssp GGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEEEEEC
T ss_pred hHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEEEEEC
Confidence 478999999999999997643 23345532 56667 68888887554
No 29
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=38.81 E-value=17 Score=29.62 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=16.2
Q ss_pred ecCCCcEEEEeCC-EEEEEeCC
Q 027306 55 EVPSNVTITLGGQ-DLKVKGPL 75 (225)
Q Consensus 55 ~IP~~V~v~i~~~-~i~VkGpl 75 (225)
.||+||+|++.++ .|+++|..
T Consensus 116 ~ip~gv~v~v~~~t~Iil~G~D 137 (180)
T 3v2d_H 116 EPPEGITFEVPEPTRVRVSGID 137 (180)
T ss_dssp CCCTTCEEECSSTTEEEEEESC
T ss_pred ECCCCeEEEECCCCEEEEEECc
Confidence 7889999888764 67777754
No 30
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=38.39 E-value=50 Score=29.10 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=34.2
Q ss_pred CCCcEEEEeCCEEEEEeCC----------eEEEEE--cCCC-----eEEEEe-CCEEEEEecc
Q 027306 57 PSNVTITLGGQDLKVKGPL----------GELSLV--YPRE-----VKVDRE-DSFLRVRKTV 101 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl----------G~l~~~--~~~~-----v~v~~~-~~~i~v~~~~ 101 (225)
|++|+|+++++.|+|+|-. |+..+. ||.. +.-..+ +|.|.|....
T Consensus 125 ~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~nGVL~I~lPK 187 (314)
T 2bol_A 125 AEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPV 187 (314)
T ss_dssp TTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSSEEEEEEEB
T ss_pred hHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCCCEEEEEEec
Confidence 5899999999999999976 455554 4433 566678 8999887654
No 31
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=36.75 E-value=14 Score=31.34 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=28.6
Q ss_pred EEEEeCCEEEEE-eCCeEEEEEcCCCeEEEEeC-CEEEEEecccchhhhhHHHhHHHHHhh
Q 027306 61 TITLGGQDLKVK-GPLGELSLVYPREVKVDRED-SFLRVRKTVETRRANQMHGLFRTLTDN 119 (225)
Q Consensus 61 ~v~i~~~~i~Vk-GplG~l~~~~~~~v~v~~~~-~~i~v~~~~~~kk~~a~~GT~rsli~N 119 (225)
.+.++++.|.+. |=..-...++|..|+++..+ +.|.++-.+ ++..|.+.|.|+.
T Consensus 138 ra~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iii~GiD-----Kq~Vgq~AA~IR~ 193 (223)
T 3bbo_I 138 RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYD-----KSEIGQFAATVRK 193 (223)
T ss_dssp CEEECSSEEEECSSCSSCEEEECCSSEEEECSSTTBCEEEESS-----SHHHHHHHHHTTS
T ss_pred EEEecCCEEEEEeeCCccEEEECCCCeEEEeCCCCEEEEEeCC-----HHHHHHHHHHHhc
Confidence 344455554443 55566666666666666544 355555433 3455666666554
No 32
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=34.13 E-value=51 Score=25.48 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=31.1
Q ss_pred CCCcEEEE-eCCEEEEEeCC------------------eEEEE--EcCCC-----eEEEEeCCEEEEEecc
Q 027306 57 PSNVTITL-GGQDLKVKGPL------------------GELSL--VYPRE-----VKVDREDSFLRVRKTV 101 (225)
Q Consensus 57 P~~V~v~i-~~~~i~VkGpl------------------G~l~~--~~~~~-----v~v~~~~~~i~v~~~~ 101 (225)
|++|+|++ +++.|+|+|-. |...+ .||.. +.-..++|.|.|....
T Consensus 66 kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK 136 (151)
T 1gme_A 66 KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 136 (151)
T ss_dssp GGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEETTEEEEEEEC
T ss_pred hHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEEEECCEEEEEEEc
Confidence 36899999 57899999853 34444 45432 5556788998887543
No 33
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=29.71 E-value=2.3e+02 Score=23.07 Aligned_cols=52 Identities=8% Similarity=0.019 Sum_probs=39.7
Q ss_pred eCCEEEEE---eCCeEEEEEcCCCeEEEEeC---CEEEEEecccchhhhhHHHhHHHHHhhcc
Q 027306 65 GGQDLKVK---GPLGELSLVYPREVKVDRED---SFLRVRKTVETRRANQMHGLFRTLTDNMV 121 (225)
Q Consensus 65 ~~~~i~Vk---GplG~l~~~~~~~v~v~~~~---~~i~v~~~~~~kk~~a~~GT~rsli~NmI 121 (225)
+++.|.++ |=.--...++|..+.+...+ +.|.++-.+ ++..|.+.|.|+...
T Consensus 108 ~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~D-----ke~Vgq~AA~Irq~~ 165 (191)
T 3u5e_H 108 GAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNS-----VEDVSQNAADLQQIC 165 (191)
T ss_dssp SCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESC-----HHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECC-----HHHHHHHHHHHHhhc
Confidence 67778876 66677888888888888776 678887554 467888888888864
No 34
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=27.88 E-value=1.6e+02 Score=23.98 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=44.8
Q ss_pred cCCCcEEEEeCCEEEEE---eCCeEEEEEcCCCeEEEEeC---CEEEEEecccchhhhhHHHhHHHHHhhcc
Q 027306 56 VPSNVTITLGGQDLKVK---GPLGELSLVYPREVKVDRED---SFLRVRKTVETRRANQMHGLFRTLTDNMV 121 (225)
Q Consensus 56 IP~~V~v~i~~~~i~Vk---GplG~l~~~~~~~v~v~~~~---~~i~v~~~~~~kk~~a~~GT~rsli~NmI 121 (225)
.|..+.+..+++.|.++ |=.--...++|..+.+...+ +.|.++-.+ ++..|.+.|.|++..
T Consensus 98 yr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~D-----ke~Vgq~AA~Irq~~ 164 (190)
T 3iz5_F 98 FPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGND-----IELVSRSAALINQKC 164 (190)
T ss_dssp SCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESC-----HHHHHHHHHHHHHHT
T ss_pred ccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECC-----HHHHHHHHHHHHhhc
Confidence 45555555578888886 77777888888888888765 468777554 467888888888864
No 35
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=27.77 E-value=83 Score=22.19 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=22.5
Q ss_pred eEEEEeccHHHHHHHHHHhhc-cCCCCccccC
Q 027306 175 RITVSGYDKSAIGQFAASIRK-WRPPEPYKGK 205 (225)
Q Consensus 175 ~Iil~GiDKq~Vgq~AA~Ir~-~R~PepYKGK 205 (225)
.+.|+| |.+.|-.....|+. ++.++.|-.-
T Consensus 63 ~v~I~G-~~~~v~~A~~~I~~~i~~~~~~~~~ 93 (94)
T 1x4m_A 63 PLRITG-DPYKVQQAKEMVLELIRDQGSGPSS 93 (94)
T ss_dssp EEEEEE-CTTTHHHHHHHHHHHHCCCSSCSSC
T ss_pred EEEEEe-CHHHHHHHHHHHHHHHhccCCCCCC
Confidence 388999 88988888887776 5666766543
No 36
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=27.29 E-value=1.6e+02 Score=23.92 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=43.2
Q ss_pred CCCcEEEEeCCEEEEE---eCCeEEEEEcCCCeEEEEeC---CEEEEEecccchhhhhHHHhHHHHHhhcc
Q 027306 57 PSNVTITLGGQDLKVK---GPLGELSLVYPREVKVDRED---SFLRVRKTVETRRANQMHGLFRTLTDNMV 121 (225)
Q Consensus 57 P~~V~v~i~~~~i~Vk---GplG~l~~~~~~~v~v~~~~---~~i~v~~~~~~kk~~a~~GT~rsli~NmI 121 (225)
|..+.+.-+++.|.++ |=.--...++|..+.+...+ +.|.++-.+ ++..|.+.|.|++..
T Consensus 98 r~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~D-----ke~Vgq~AA~Ir~~~ 163 (188)
T 4a17_E 98 PIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGID-----LNNVSQTCALIHQSC 163 (188)
T ss_dssp CCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESC-----HHHHHHHHHHHHHHT
T ss_pred cceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcC-----HHHHHHHHHHHHhhc
Confidence 4444444467788885 76777888888889988776 568777554 467888888888864
No 37
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=26.05 E-value=70 Score=28.10 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.2
Q ss_pred CCCcEEEEeCCEEEEEeCC
Q 027306 57 PSNVTITLGGQDLKVKGPL 75 (225)
Q Consensus 57 P~~V~v~i~~~~i~VkGpl 75 (225)
|++|+|+++++.|+|+|-.
T Consensus 247 ~edi~V~v~~~~LtI~ge~ 265 (314)
T 2bol_A 247 PKDVKVWAKGNKVYVHGVT 265 (314)
T ss_dssp GGGEEEEESSSEEEEEEEE
T ss_pred hHHeEEEEECCEEEEEEEE
Confidence 4788999999999999865
No 38
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=25.60 E-value=2.6e+02 Score=22.40 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=38.2
Q ss_pred CcEEEEeCCEEEEE-eCCeEEEEEcCCCeEEEEeC-CEEEEEecccchhhhhHHHhHHHHHhhc
Q 027306 59 NVTITLGGQDLKVK-GPLGELSLVYPREVKVDRED-SFLRVRKTVETRRANQMHGLFRTLTDNM 120 (225)
Q Consensus 59 ~V~v~i~~~~i~Vk-GplG~l~~~~~~~v~v~~~~-~~i~v~~~~~~kk~~a~~GT~rsli~Nm 120 (225)
|-.+.++++.|.+. |=.-....++|..++++..+ +.|.++-.+ ++..|.+.|.|+..
T Consensus 92 Gyra~~~G~~l~l~LG~Shpv~~~iP~gi~v~v~~~t~I~v~G~D-----kq~Vgq~AA~Ir~~ 150 (177)
T 1rl6_A 92 GYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGAD-----KQRVGELAANIRAV 150 (177)
T ss_dssp TCEEEEETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESC-----HHHHHHHHHHHHTT
T ss_pred ceEEEecCCEEEEEecCCccEEEeCCCCcEEEECCCCEEEEEeCC-----HHHHHHHHHHHhcc
Confidence 44566667776663 44455677888778887664 477776554 46778888888753
No 39
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=23.52 E-value=27 Score=25.91 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHhhccCC
Q 027306 182 DKSAIGQFAASIRKWRP 198 (225)
Q Consensus 182 DKq~Vgq~AA~Ir~~R~ 198 (225)
+.+++.|||+.||+||-
T Consensus 30 ~~~ElqqFA~Llr~YR~ 46 (98)
T 4fqn_A 30 SSQEIQQFAALLHEYRN 46 (98)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHc
Confidence 57899999999999985
No 40
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=23.50 E-value=1e+02 Score=21.10 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=21.9
Q ss_pred CcEEEEccCCe--------EEEEeccHHHHHHHHHHhhcc
Q 027306 165 GIKVNVEENTR--------ITVSGYDKSAIGQFAASIRKW 196 (225)
Q Consensus 165 ~Vkv~v~~~t~--------Iil~GiDKq~Vgq~AA~Ir~~ 196 (225)
|+++.++++.. +.|+| |.+.+-.....|+.+
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i 82 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDI 82 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHH
Confidence 45555554333 89999 999998877777653
Done!