RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027306
(225 letters)
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 95
Score = 143 bits (362), Expect = 6e-45
Identities = 56/93 (60%), Positives = 66/93 (70%)
Query: 128 FEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIG 187
F KKLQ+VGVGYRAA++G V+ LSLGFSHPV +P GI T I + G DK IG
Sbjct: 1 FTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIG 60
Query: 188 QFAASIRKWRPPEPYKGKGVKYVDEVIRRKEGK 220
Q AA +R +R PEPYKGKGV+Y DEV+R KE K
Sbjct: 61 QVAADLRAYRRPEPYKGKGVRYADEVVRTKEAK 93
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 138 bits (349), Expect = 5e-43
Identities = 43/88 (48%), Positives = 57/88 (64%)
Query: 128 FEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIG 187
+ K+L + G+GYRA L G+ L L++GFSHPV + P+GI V E TR+ VSG DK +G
Sbjct: 1 YSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVG 60
Query: 188 QFAASIRKWRPPEPYKGKGVKYVDEVIR 215
Q AA+IR R P Y KG+ Y E +R
Sbjct: 61 QVAANIRAIRKPSAYHEKGIYYAGEPVR 88
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 89
Score = 132 bits (334), Expect = 9e-41
Identities = 46/88 (52%), Positives = 67/88 (76%)
Query: 128 FEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIG 187
+EK L++VGVGYRA+ +G+ LVLS+G+SHPV + +G+++ V T+I V G DK +G
Sbjct: 1 YEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVG 60
Query: 188 QFAASIRKWRPPEPYKGKGVKYVDEVIR 215
+ AA+IR RPPEPYKGKG++Y E++R
Sbjct: 61 ELAANIRAVRPPEPYKGKGIRYEGELVR 88
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 90
Score = 131 bits (332), Expect = 2e-40
Identities = 43/90 (47%), Positives = 60/90 (66%)
Query: 128 FEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIG 187
+ L++ GVG+RA L G+ L +++G+SHPV + P G+ V E TRI VSG DK +G
Sbjct: 1 YTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVG 60
Query: 188 QFAASIRKWRPPEPYKGKGVKYVDEVIRRK 217
Q AA++RK R P+ Y GKGV++V E I K
Sbjct: 61 QVAANVRKVRKPDAYHGKGVRFVGEQIALK 90
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 94.1 bits (234), Expect = 7e-26
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRA 106
SR+ K P+ VP+ V + + GQ + +KG GEL+ V+V D+ L
Sbjct: 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADG 60
Query: 107 NQMHGLFRTLTDNMVVGVSKG 127
G R L ++MV+GV++G
Sbjct: 61 WAQAGTARALLNSMVIGVTEG 81
Score = 24.7 bits (54), Expect = 4.1
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 161 TIPDGIKVNVEENTRITVSG 180
+P G+ V + IT+ G
Sbjct: 9 VVPAGVDVKINGQV-ITIKG 27
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 78
Score = 87.2 bits (216), Expect = 3e-23
Identities = 35/78 (44%), Positives = 46/78 (58%)
Query: 50 GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQM 109
GKQPI VPS VT+ KVKGP GEL++ Y E+ V ++ L V + + ++ +
Sbjct: 1 GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRAL 60
Query: 110 HGLFRTLTDNMVVGVSKG 127
HGL RTL N V GVS G
Sbjct: 61 HGLTRTLVANAVKGVSDG 78
Score = 25.5 bits (56), Expect = 2.0
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 161 TIPDGIKVNVEENTRITVSG 180
+P G+ VN ++ V G
Sbjct: 6 AVPSGVTVNAQDGV-FKVKG 24
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 75
Score = 82.6 bits (204), Expect = 2e-21
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 53 PIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGL 112
PIE+P+ VT+T+ G + VKGP GEL+ + ++ + E + + V + + + +HG
Sbjct: 1 PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGT 60
Query: 113 FRTLTDNMVVGVSKG 127
R+L NMV GVSKG
Sbjct: 61 TRSLLANMVEGVSKG 75
Score = 25.2 bits (55), Expect = 2.0
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 161 TIPDGIKVNVEENTRITVSG 180
IP G+ V V NT +TV G
Sbjct: 3 EIPAGVTVTVNGNT-VTVKG 21
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 71
Score = 76.8 bits (189), Expect = 2e-19
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 57 PSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTL 116
P V++ + +KVKGP GEL + E++V E+ +RV + + RR +HGL RTL
Sbjct: 1 PKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTL 60
Query: 117 TDNMVVGVSKG 127
N V GVS+G
Sbjct: 61 IANAVKGVSEG 71
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 75.7 bits (186), Expect = 1e-18
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPRE----VKVDREDSFLRVRKTVE 102
+ + Q +++P NV ITL G+ + VKGP G L + + ++ LRV K
Sbjct: 3 TILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWG 62
Query: 103 TRRANQMHGLFRTLTDNMVVGVSKG 127
R+ + NM+ GV+ G
Sbjct: 63 NRKELATVRTICSHVQNMIKGVTLG 87
Score = 23.7 bits (51), Expect = 9.0
Identities = 5/21 (23%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 160 MTIPDGIKVNVEENTRITVSG 180
+ IP+ + + ++ T + V G
Sbjct: 10 VDIPENVDITLKGRT-VIVKG 29
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 79
Score = 73.8 bits (181), Expect = 4e-18
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 51 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPRE-VKVDREDSFLRVRKTVETRRANQM 109
+ +E+P +V D+ V+G G ++ + V + + + + +
Sbjct: 2 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMST 61
Query: 110 HGLFRTLTDNMVVGVSKG 127
G F++ +NM GV++G
Sbjct: 62 IGTFQSHIENMFHGVTEG 79
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 93
Score = 34.3 bits (79), Expect = 0.002
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 152 LGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRK 195
LG P R TI V ++ +TVSG D A+GQ AA I +
Sbjct: 29 LGEKAPRRTTIHGDTDVEIDGE-ELTVSGPDIEAVGQTAADIEQ 71
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella
oneidensis [TaxId: 70863]}
Length = 387
Score = 28.7 bits (64), Expect = 0.60
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 137 VGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKW 196
+ Y+ A + + + LG SHP+ + K +++ +++ +F +R +
Sbjct: 156 LAYKRASDALLKIQPLGISHPISHDLLRVTKQALQDVIESNQQLFNRLDTDRFFYCVRPY 215
Query: 197 RPPEPYKGKGVKY 209
+PY+ V Y
Sbjct: 216 Y--KPYRVGSVVY 226
>d1vpza_ b.151.1.1 (A:) Carbon storage regulator homolog, CsrA
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 57
Score = 25.3 bits (56), Expect = 1.2
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 47 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRK 99
+R + + V +VT+T+ L VKG + + P+EV V RE+ + R++K
Sbjct: 7 TRRVGETLMVGDDVTVTV----LGVKGNQVRIGVNAPKEVAVHREEIYQRIQK 55
>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
(Rhodosporidium toruloides) [TaxId: 5286]}
Length = 678
Score = 26.5 bits (58), Expect = 3.4
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 41 TIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKT 100
T + + I ++ + P++ T+ L G L + G++ V R+ +RV+ +
Sbjct: 1 TTQVTQVDIVEKMLAAPTDSTLELDGYSLNL----GDV-------VSAARKGRPVRVKDS 49
Query: 101 VETR-RANQMHGLFRTLTDNMVVGVSKGF 128
E R + ++ R+ V GV+ GF
Sbjct: 50 DEIRSKIDKSVEFLRSQLSMSVYGVTTGF 78
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 23.9 bits (52), Expect = 5.5
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 165 GIKVNVEENTRITVSGYDKSAIGQFAASIRK 195
G + V N RI + + + +IRK
Sbjct: 31 GCSIFVANNGRIWATCPSRFSEEILIEAIRK 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.381
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 791,353
Number of extensions: 34926
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 24
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)