Query 027307
Match_columns 225
No_of_seqs 129 out of 319
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 1.2E-49 2.6E-54 312.0 9.5 101 42-142 1-101 (101)
2 PF05308 Mito_fiss_reg: Mitoch 96.6 0.0062 1.3E-07 55.1 7.2 25 126-150 122-146 (253)
3 COG3416 Uncharacterized protei 92.1 1.9 4.1E-05 39.2 10.3 69 82-150 11-79 (233)
4 PF05308 Mito_fiss_reg: Mitoch 91.2 0.43 9.4E-06 43.4 5.4 23 117-139 120-142 (253)
5 PF09849 DUF2076: Uncharacteri 85.2 7.4 0.00016 35.4 9.2 63 82-144 11-73 (247)
6 PF09006 Surfac_D-trimer: Lung 82.3 3 6.4E-05 29.5 4.2 28 121-148 1-28 (46)
7 KOG2675 Adenylate cyclase-asso 81.4 3 6.5E-05 41.4 5.4 7 142-148 199-205 (480)
8 PRK10265 chaperone-modulator p 77.9 4.4 9.5E-05 31.6 4.5 31 117-147 69-99 (101)
9 PLN02523 galacturonosyltransfe 77.1 8.7 0.00019 39.0 7.3 70 85-160 145-216 (559)
10 PF11333 DUF3135: Protein of u 74.5 10 0.00022 29.3 5.5 66 66-135 15-82 (83)
11 PLN02742 Probable galacturonos 65.3 25 0.00054 35.6 7.4 63 93-160 132-194 (534)
12 PF01213 CAP_N: Adenylate cycl 63.0 8.5 0.00018 36.0 3.6 8 113-120 141-148 (312)
13 PF12097 DUF3573: Protein of u 61.6 9.1 0.0002 37.1 3.5 22 120-141 43-64 (383)
14 PF13334 DUF4094: Domain of un 61.6 7.8 0.00017 30.5 2.6 24 118-141 72-95 (95)
15 PF07106 TBPIP: Tat binding pr 61.5 7 0.00015 32.4 2.5 79 68-146 20-106 (169)
16 PRK10803 tol-pal system protei 60.1 14 0.00029 33.3 4.2 31 119-149 54-84 (263)
17 PF06698 DUF1192: Protein of u 59.4 22 0.00047 26.1 4.4 28 121-148 23-50 (59)
18 PF08657 DASH_Spc34: DASH comp 56.0 41 0.00088 30.8 6.6 82 63-150 130-211 (259)
19 COG5509 Uncharacterized small 52.5 26 0.00056 26.4 3.9 27 121-147 27-53 (65)
20 PLN02910 polygalacturonate 4-a 51.4 86 0.0019 32.7 8.6 67 89-160 247-315 (657)
21 KOG1655 Protein involved in va 51.3 22 0.00048 32.2 4.0 55 74-148 1-55 (218)
22 PF04728 LPP: Lipoprotein leuc 50.9 39 0.00085 24.7 4.6 27 120-146 11-37 (56)
23 PF13591 MerR_2: MerR HTH fami 49.9 20 0.00043 26.9 3.1 24 117-140 61-84 (84)
24 cd04766 HTH_HspR Helix-Turn-He 49.3 31 0.00068 25.7 4.1 24 120-143 66-89 (91)
25 KOG4552 Vitamin-D-receptor int 47.9 48 0.001 30.6 5.7 58 82-147 58-120 (272)
26 KOG2675 Adenylate cyclase-asso 47.8 14 0.0003 36.9 2.4 6 103-108 93-98 (480)
27 PF04977 DivIC: Septum formati 46.5 41 0.00088 23.7 4.1 27 121-147 19-45 (80)
28 PLN02829 Probable galacturonos 44.7 69 0.0015 33.3 6.8 63 93-160 239-301 (639)
29 PF06305 DUF1049: Protein of u 44.6 49 0.0011 23.1 4.3 26 120-145 42-67 (68)
30 PF04977 DivIC: Septum formati 42.6 66 0.0014 22.6 4.7 27 119-145 24-50 (80)
31 PF15447 NTS: N-terminal segme 42.6 12 0.00026 25.1 0.8 16 5-20 3-18 (37)
32 KOG4196 bZIP transcription fac 41.8 42 0.0009 28.5 4.0 56 93-148 53-110 (135)
33 PF14197 Cep57_CLD_2: Centroso 41.8 56 0.0012 24.3 4.3 31 117-147 38-68 (69)
34 PF13600 DUF4140: N-terminal d 41.2 56 0.0012 24.8 4.4 32 119-150 70-101 (104)
35 cd01111 HTH_MerD Helix-Turn-He 41.0 82 0.0018 24.6 5.4 28 117-144 78-105 (107)
36 PLN02867 Probable galacturonos 40.9 2.4E+02 0.0053 28.8 9.9 62 94-160 117-178 (535)
37 cd00089 HR1 Protein kinase C-r 39.3 78 0.0017 22.8 4.7 28 119-146 42-69 (72)
38 PF12325 TMF_TATA_bd: TATA ele 38.7 70 0.0015 26.2 4.8 32 116-147 13-44 (120)
39 PRK00888 ftsB cell division pr 38.6 57 0.0012 25.8 4.2 27 120-146 28-54 (105)
40 smart00338 BRLZ basic region l 38.4 81 0.0018 22.2 4.6 28 119-146 33-60 (65)
41 PF08606 Prp19: Prp19/Pso4-lik 38.0 78 0.0017 24.2 4.6 32 117-148 6-37 (70)
42 COG3416 Uncharacterized protei 37.5 97 0.0021 28.4 5.9 45 106-150 28-72 (233)
43 PF14282 FlxA: FlxA-like prote 36.9 58 0.0013 25.7 4.0 25 121-145 53-77 (106)
44 TIGR02209 ftsL_broad cell divi 36.9 69 0.0015 23.2 4.2 27 120-146 32-58 (85)
45 PF10883 DUF2681: Protein of u 36.6 64 0.0014 25.3 4.1 30 121-150 32-61 (87)
46 PF11853 DUF3373: Protein of u 35.9 34 0.00075 34.3 3.1 33 112-145 18-50 (489)
47 PLN02769 Probable galacturonos 34.3 1.9E+02 0.0042 30.1 8.1 62 94-160 239-300 (629)
48 PRK11677 hypothetical protein; 33.5 56 0.0012 27.3 3.6 40 114-153 12-56 (134)
49 PF11471 Sugarporin_N: Maltopo 33.3 81 0.0017 23.0 3.9 27 123-149 29-55 (60)
50 PF11336 DUF3138: Protein of u 32.5 53 0.0011 33.1 3.7 28 118-145 24-51 (514)
51 PF12001 DUF3496: Domain of un 32.5 64 0.0014 26.4 3.7 29 122-150 3-39 (111)
52 PF06818 Fez1: Fez1; InterPro 32.5 74 0.0016 28.5 4.3 31 118-148 9-39 (202)
53 PHA02047 phage lambda Rz1-like 31.1 1.1E+02 0.0024 24.9 4.7 33 116-148 18-56 (101)
54 PF06696 Strep_SA_rep: Strepto 31.0 1.2E+02 0.0027 18.9 3.9 22 124-145 3-24 (25)
55 PF06295 DUF1043: Protein of u 30.7 63 0.0014 26.2 3.4 20 129-148 28-47 (128)
56 PHA02562 46 endonuclease subun 29.2 91 0.002 29.8 4.7 12 70-81 152-163 (562)
57 PF07716 bZIP_2: Basic region 29.1 1.3E+02 0.0028 20.7 4.2 26 121-146 27-52 (54)
58 PRK09039 hypothetical protein; 28.8 88 0.0019 29.4 4.4 26 120-145 138-163 (343)
59 PF11471 Sugarporin_N: Maltopo 27.6 1.1E+02 0.0024 22.2 3.9 28 119-146 32-59 (60)
60 PF14282 FlxA: FlxA-like prote 27.0 75 0.0016 25.0 3.1 23 118-140 18-40 (106)
61 PRK00451 glycine dehydrogenase 26.9 47 0.001 30.8 2.3 35 60-95 2-36 (447)
62 PF07334 IFP_35_N: Interferon- 25.9 1.1E+02 0.0023 23.7 3.6 27 121-147 2-28 (76)
63 PRK04406 hypothetical protein; 25.8 2.8E+02 0.0061 20.8 5.9 23 122-144 28-50 (75)
64 PF04420 CHD5: CHD5-like prote 25.8 1E+02 0.0022 25.9 3.9 33 117-149 64-96 (161)
65 cd04772 HTH_TioE_rpt1 First He 25.7 1.3E+02 0.0028 23.1 4.1 24 119-142 76-99 (99)
66 PLN02659 Probable galacturonos 25.6 2.5E+02 0.0054 28.7 7.1 61 95-160 114-174 (534)
67 PRK11239 hypothetical protein; 25.2 1.1E+02 0.0023 27.9 4.1 31 118-148 182-212 (215)
68 PF03242 LEA_3: Late embryogen 25.1 30 0.00065 27.3 0.6 20 103-122 58-77 (93)
69 PF07462 MSP1_C: Merozoite sur 24.7 1.7E+02 0.0038 30.1 5.8 11 136-146 245-255 (574)
70 cd00890 Prefoldin Prefoldin is 24.6 1.6E+02 0.0035 22.5 4.6 31 119-149 6-36 (129)
71 PF04102 SlyX: SlyX; InterPro 24.5 1E+02 0.0023 22.4 3.3 26 121-146 20-45 (69)
72 PLN02718 Probable galacturonos 24.4 2.8E+02 0.006 28.8 7.3 62 94-160 222-283 (603)
73 PF06295 DUF1043: Protein of u 24.3 1.5E+02 0.0032 24.1 4.4 32 119-150 25-56 (128)
74 PF15483 DUF4641: Domain of un 24.1 80 0.0017 31.5 3.3 31 114-145 414-444 (445)
75 PRK00888 ftsB cell division pr 24.1 1.4E+02 0.0029 23.7 4.1 27 121-147 36-62 (105)
76 PRK01203 prefoldin subunit alp 23.6 1.3E+02 0.0029 25.1 4.1 28 120-147 8-35 (130)
77 PRK00295 hypothetical protein; 23.6 1.5E+02 0.0033 21.7 4.0 22 123-144 23-44 (68)
78 PRK04325 hypothetical protein; 23.4 2.3E+02 0.005 21.1 5.0 17 124-140 35-51 (74)
79 PF05120 GvpG: Gas vesicle pro 23.4 1E+02 0.0022 23.7 3.2 36 113-148 8-43 (79)
80 cd00584 Prefoldin_alpha Prefol 23.3 1.5E+02 0.0033 23.2 4.3 31 120-150 7-37 (129)
81 smart00150 SPEC Spectrin repea 23.0 2.1E+02 0.0045 19.8 4.5 40 111-150 23-62 (101)
82 PRK00846 hypothetical protein; 22.8 3.2E+02 0.007 21.0 5.8 24 121-144 29-52 (77)
83 PF00170 bZIP_1: bZIP transcri 22.6 1.9E+02 0.0041 20.3 4.2 28 120-147 27-54 (64)
84 TIGR00293 prefoldin, archaeal 22.6 1.8E+02 0.004 22.6 4.6 29 120-148 7-35 (126)
85 PF10685 KGG: Stress-induced b 22.5 50 0.0011 20.1 1.1 13 2-14 4-16 (23)
86 PF13600 DUF4140: N-terminal d 22.5 1.5E+02 0.0032 22.4 3.9 26 120-145 78-103 (104)
87 PF15300 INT_SG_DDX_CT_C: INTS 22.5 77 0.0017 23.7 2.3 27 81-107 23-51 (65)
88 PF12718 Tropomyosin_1: Tropom 22.4 1.4E+02 0.0031 24.7 4.1 31 119-149 35-65 (143)
89 PRK02793 phi X174 lysis protei 22.1 1.7E+02 0.0036 21.8 4.0 22 121-142 31-52 (72)
90 PF12325 TMF_TATA_bd: TATA ele 22.1 1.7E+02 0.0036 24.0 4.3 29 119-147 30-58 (120)
91 PF09789 DUF2353: Uncharacteri 22.0 1.1E+02 0.0024 29.1 3.8 37 114-150 191-227 (319)
92 PF14257 DUF4349: Domain of un 21.8 1.7E+02 0.0037 25.7 4.7 34 117-150 160-193 (262)
93 PRK09413 IS2 repressor TnpA; R 21.4 1.6E+02 0.0034 23.2 4.0 25 121-145 73-97 (121)
94 PRK14127 cell division protein 21.1 2.2E+02 0.0047 23.1 4.8 30 121-150 39-68 (109)
95 PRK04406 hypothetical protein; 21.1 1.8E+02 0.0039 21.9 4.0 24 120-143 33-56 (75)
96 PF04728 LPP: Lipoprotein leuc 21.0 2E+02 0.0044 21.0 4.1 24 121-144 19-42 (56)
97 PLN02870 Probable galacturonos 20.6 3.1E+02 0.0068 28.1 6.7 59 97-160 115-173 (533)
98 PF00172 Zn_clus: Fungal Zn(2) 20.6 60 0.0013 21.0 1.2 15 41-55 1-15 (40)
99 PRK02119 hypothetical protein; 20.5 1.9E+02 0.0041 21.6 4.0 21 123-143 27-47 (73)
100 PF08227 DASH_Hsk3: DASH compl 20.4 2.3E+02 0.0049 19.8 4.1 29 120-148 3-31 (45)
101 PF10152 DUF2360: Predicted co 20.4 5E+02 0.011 21.5 8.3 30 117-146 19-48 (148)
102 KOG3397 Acetyltransferases [Ge 20.2 96 0.0021 28.1 2.8 27 91-121 123-149 (225)
103 COG3879 Uncharacterized protei 20.1 1.5E+02 0.0033 27.4 4.1 40 105-146 45-84 (247)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=1.2e-49 Score=311.98 Aligned_cols=101 Identities=65% Similarity=1.140 Sum_probs=99.7
Q ss_pred CChhhhhhhcCCCCCCCCCCCCCCCChhhhHHHHHhhcchhHHHHHhcCCCcchHHHHHHHHHHHhhcccCCCcchhHHH
Q 027307 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAI 121 (225)
Q Consensus 42 ~CAACK~lRRrC~~~C~fAPYFPad~~~rFa~vhKvFG~SNV~kmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I 121 (225)
+|||||||||||+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027307 122 STLQQQVQCLQAELNVVRNEI 142 (225)
Q Consensus 122 ~~Lq~QI~~lqaEL~~vr~eL 142 (225)
+.|||||+++++||+.+++||
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999886
No 2
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=96.64 E-value=0.0062 Score=55.11 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 126 QQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 126 ~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
++|..||.||..+|+||++....+.
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~qe 146 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQE 146 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4688899999999999998876544
No 3
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.14 E-value=1.9 Score=39.16 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=59.5
Q ss_pred hHHHHHhcCCCcchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 82 NVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 82 NV~kmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
|+..-|+......|+..+..||-|+-++.-|--|=-+-.|..+++-|+.++.+|+.++.+|+....-++
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~~ 79 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGEA 79 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 444556777778999999999999999999999999999999999999999999999999988765433
No 4
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=91.17 E-value=0.43 Score=43.35 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 027307 117 CMGAISTLQQQVQCLQAELNVVR 139 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr 139 (225)
...-|..||.+|..|++||+++-
T Consensus 120 AlqKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999854
No 5
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=85.18 E-value=7.4 Score=35.43 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=57.0
Q ss_pred hHHHHHhcCCCcchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 82 NVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIK 144 (225)
Q Consensus 82 NV~kmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~ 144 (225)
++..-|+.+....|+.-++.||-|+=.|.=|-+|=-+-.|..+++=|++++++|+.++.+|..
T Consensus 11 ~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 11 DLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445557778877899999999999999999999999999999999999999999999999866
No 6
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=82.32 E-value=3 Score=29.52 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
|..|.+|+..|+.+|..+++-+..|+--
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999864
No 7
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=81.38 E-value=3 Score=41.36 Aligned_cols=7 Identities=14% Similarity=0.235 Sum_probs=3.5
Q ss_pred HHHhhhh
Q 027307 142 IIKYKYR 148 (225)
Q Consensus 142 L~~~~~~ 148 (225)
|..|--+
T Consensus 199 L~~YVk~ 205 (480)
T KOG2675|consen 199 LQAYVKE 205 (480)
T ss_pred HHHHHHH
Confidence 5555443
No 8
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=77.92 E-value=4.4 Score=31.59 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
.+++|..|-.||+.+++|+..++++|..|..
T Consensus 69 gialvl~LLd~i~~Lr~el~~L~~~l~~~~~ 99 (101)
T PRK10265 69 GIAVALTLLDEIAHLKQENRLLRQRLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999864
No 9
>PLN02523 galacturonosyltransferase
Probab=77.07 E-value=8.7 Score=38.97 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=56.9
Q ss_pred HHHhcCCC--cchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCc
Q 027307 85 KMLNDVPE--SQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160 (225)
Q Consensus 85 kmL~~lp~--~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A~~~~~~~~~~ 160 (225)
..+++||. .+|-.+|+.++++|.. +|-|..+|.+|+..|+.+++++...+.|-+.+..-.| ..+|-+.|=
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa-~t~PK~lHC 216 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAA-KSIPKSLHC 216 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCccc
Confidence 34566764 3577899999999993 4447789999999999999999999998888877777 777888764
No 10
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=74.51 E-value=10 Score=29.30 Aligned_cols=66 Identities=18% Similarity=0.352 Sum_probs=50.1
Q ss_pred CChhhhHHHHHhhcchhHHHHHhcCCCcchH--HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHH
Q 027307 66 HEPQKFASVHKVFGASNVSKMLNDVPESQRA--DAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAEL 135 (225)
Q Consensus 66 d~~~rFa~vhKvFG~SNV~kmL~~lp~~~R~--dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL 135 (225)
++|+.|....+ .-+-.+|...|++.+. .++.+-|=---.|.++|+..|+-+...++.++..+...|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788887643 4466788899987543 455565555667889999999999999999988777655
No 11
>PLN02742 Probable galacturonosyltransferase
Probab=65.30 E-value=25 Score=35.63 Aligned_cols=63 Identities=22% Similarity=0.272 Sum_probs=52.3
Q ss_pred cchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCc
Q 027307 93 SQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160 (225)
Q Consensus 93 ~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A~~~~~~~~~~ 160 (225)
+.+-..|+.++++|..-. |.|--++.+|++.|+.+++|+...+.|-+.+..-.| ..+|-+.|=
T Consensus 132 ~~~~~~m~~~i~~ak~~~----~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa-~t~PK~lHC 194 (534)
T PLN02742 132 EPIIRDLAALIYQAQDLH----YDSATTIMTLKAHIQALEERANAATVQSTKFGQLAA-EALPKSLYC 194 (534)
T ss_pred HHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCccc
Confidence 456678999999887644 459999999999999999999999998888877777 777887763
No 12
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=63.05 E-value=8.5 Score=36.05 Aligned_cols=8 Identities=25% Similarity=0.646 Sum_probs=4.3
Q ss_pred CCcchhHH
Q 027307 113 PVYGCMGA 120 (225)
Q Consensus 113 PVyGCvG~ 120 (225)
|+.|+|.+
T Consensus 141 ~aLgWV~v 148 (312)
T PF01213_consen 141 PALGWVAV 148 (312)
T ss_dssp GGGGGGG-
T ss_pred heeeeeee
Confidence 55666654
No 13
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=61.63 E-value=9.1 Score=37.09 Aligned_cols=22 Identities=50% Similarity=0.652 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027307 120 AISTLQQQVQCLQAELNVVRNE 141 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~e 141 (225)
.|.+||+||+.||+||..++.+
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999998876
No 14
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=61.63 E-value=7.8 Score=30.48 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 118 MGAISTLQQQVQCLQAELNVVRNE 141 (225)
Q Consensus 118 vG~I~~Lq~QI~~lqaEL~~vr~e 141 (225)
.-.|..|...|..||.||+++|++
T Consensus 72 h~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 72 HEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446778888888888888887753
No 15
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.54 E-value=7 Score=32.41 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=48.0
Q ss_pred hhhhHHHHHhhcchhHHHHHhcCCCcchH---HHHHHHHHHHhhcccCCCcch-----hHHHHHHHHHHHHHHHHHHHHH
Q 027307 68 PQKFASVHKVFGASNVSKMLNDVPESQRA---DAANSLVYEANVRLRDPVYGC-----MGAISTLQQQVQCLQAELNVVR 139 (225)
Q Consensus 68 ~~rFa~vhKvFG~SNV~kmL~~lp~~~R~---dA~~SLvYEA~aR~rDPVyGC-----vG~I~~Lq~QI~~lqaEL~~vr 139 (225)
..-|.|+|.-||-..|.|.|..|-...+- ..=...||=++--.-+-+..- =.-|..|+.++..++.++..++
T Consensus 20 ~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 20 QDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999988654321 223345555544333211111 2246666666666666666666
Q ss_pred HHHHHhh
Q 027307 140 NEIIKYK 146 (225)
Q Consensus 140 ~eL~~~~ 146 (225)
.+|....
T Consensus 100 ~eL~~L~ 106 (169)
T PF07106_consen 100 AELASLS 106 (169)
T ss_pred HHHHHHh
Confidence 6666654
No 16
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=60.13 E-value=14 Score=33.33 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKYRE 149 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~ 149 (225)
..+..|++||+.+|.|+..+|.+++...++-
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l 84 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQL 84 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4678999999999999999999888766553
No 17
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=59.40 E-value=22 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
|-.|+..|..|++|++.+++++.+-+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999876554
No 18
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=55.99 E-value=41 Score=30.81 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=54.8
Q ss_pred CCCCChhhhHHHHHhhcchhHHHHHhcCCCcchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 63 FSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEI 142 (225)
Q Consensus 63 FPad~~~rFa~vhKvFG~SNV~kmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL 142 (225)
|.+++..+-..|..+-|-.-+-....+++.+.=-..+.-| .+. -|+.|.-.-|..|.++.+.+.++++.+++++
T Consensus 130 ~~~~~~~~~~avA~vlG~~m~~e~~~d~dvevLL~~ae~L---~~v---YP~~ga~eki~~Lr~~y~~l~~~i~~lE~~V 203 (259)
T PF08657_consen 130 FSSRKQRRNTAVALVLGGVMHEEIVEDVDVEVLLRGAEKL---CNV---YPLPGAREKIAALRQRYNQLSNSIAYLEAEV 203 (259)
T ss_pred cCchHHHHHHHHHHhccCcccccccccCCHHHHHHHHHHH---HHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555677777765444443333332222222222 233 4999999999999999999999999999999
Q ss_pred HHhhhhhh
Q 027307 143 IKYKYREA 150 (225)
Q Consensus 143 ~~~~~~~A 150 (225)
+..+.+-.
T Consensus 204 aeQ~~qL~ 211 (259)
T PF08657_consen 204 AEQEAQLE 211 (259)
T ss_pred HHHHHHHH
Confidence 98887766
No 19
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=52.55 E-value=26 Score=26.39 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
+-.|.+.|..||+|++.+++|+.+-+.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456788888899999999888886543
No 20
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=51.40 E-value=86 Score=32.71 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=53.4
Q ss_pred cCCC--cchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCc
Q 027307 89 DVPE--SQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160 (225)
Q Consensus 89 ~lp~--~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A~~~~~~~~~~ 160 (225)
+||+ .++-.+|.-++++|.. =-|.|--++.+|++.|+.++.++...+.+-+.+..-.| ..+|-+.|=
T Consensus 247 dlp~~~~~k~~~M~~~l~~ak~----~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa-~t~PK~lHC 315 (657)
T PLN02910 247 ELHSSALDQAKAMGHVLSIAKD----QLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAA-KTVPKPLHC 315 (657)
T ss_pred ccCchHHHHHHHHHHHHHHHHh----cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCccc
Confidence 4454 3466789989988764 45679999999999999999999999998888777776 667777653
No 21
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.26 E-value=22 Score=32.19 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=31.4
Q ss_pred HHHhhcchhHHHHHhcCCCcchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 74 VHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 74 vhKvFG~SNV~kmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
+||+||..| ...|+..-.++..++=--++ .+..+|..|.+||...+.+|.+.|.-
T Consensus 1 MnRiFG~~k-----~k~p~psL~dai~~v~~r~d---------------Sve~KIskLDaeL~k~~~Qi~k~R~g 55 (218)
T KOG1655|consen 1 MNRIFGRGK-----PKEPPPSLQDAIDSVNKRSD---------------SVEKKISKLDAELCKYKDQIKKTRPG 55 (218)
T ss_pred CcccccCCC-----CCCCChhHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 378899876 23454444555555422222 34556666666666666666665543
No 22
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.86 E-value=39 Score=24.70 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
-|+.|..+|.+|..++..++.++..-+
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777665444
No 23
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=49.93 E-value=20 Score=26.92 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRN 140 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~ 140 (225)
.+++|.+|-.||+.+++||..+++
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 578999999999999999988763
No 24
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=49.30 E-value=31 Score=25.74 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 120 AISTLQQQVQCLQAELNVVRNEII 143 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~ 143 (225)
.|..|..|++.++++|+.++++|.
T Consensus 66 ~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 66 RILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344588899999999999888764
No 25
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=47.90 E-value=48 Score=30.62 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=40.5
Q ss_pred hHHHHHhcCCC-cchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhh
Q 027307 82 NVSKMLNDVPE-SQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNV----VRNEIIKYKY 147 (225)
Q Consensus 82 NV~kmL~~lp~-~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~----vr~eL~~~~~ 147 (225)
-+.+||+-+++ .+|+.+|+.|--+-+.|. ..|.+||.++..++.-|.. ++++|+..+.
T Consensus 58 ef~~llkla~eq~k~e~~m~~Lea~VEkrD--------~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 58 EFKTLLKLAPEQQKREQLMRTLEAHVEKRD--------EVIQQLQKNLKSAEVILTTACFQANQKLKSIKE 120 (272)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665553 468899998866666554 4699999999998877765 4555655543
No 26
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=47.79 E-value=14 Score=36.90 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.2
Q ss_pred HHHHhh
Q 027307 103 VYEANV 108 (225)
Q Consensus 103 vYEA~a 108 (225)
++-|..
T Consensus 93 L~~A~q 98 (480)
T KOG2675|consen 93 LWVASQ 98 (480)
T ss_pred HHHHHh
Confidence 333333
No 27
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.51 E-value=41 Score=23.74 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
+..++++++.++.+++.++.+....+.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444443
No 28
>PLN02829 Probable galacturonosyltransferase
Probab=44.70 E-value=69 Score=33.25 Aligned_cols=63 Identities=13% Similarity=0.214 Sum_probs=52.2
Q ss_pred cchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCc
Q 027307 93 SQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160 (225)
Q Consensus 93 ~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A~~~~~~~~~~ 160 (225)
..+-.+|+.++++|.-- -|.|-.++.+|++.+..++.++...+.+-+.+..-.| ..+|-+.|=
T Consensus 239 ~~~~~~m~~~i~~ak~~----~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa-~t~PK~lHC 301 (639)
T PLN02829 239 NEKLKAMEQTLAKGKQM----QDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTA-KTLPKGLHC 301 (639)
T ss_pred HHHHHHHHHHHHHHHhc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCccc
Confidence 35667899999988753 3679999999999999999999999998888877777 777887763
No 29
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.64 E-value=49 Score=23.07 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
....+++++.+++.+++.++.|++.-
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566788888888888888887653
No 30
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.64 E-value=66 Score=22.64 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
.-|..|+.+++.++++...++.++...
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888888888888888888887
No 31
>PF15447 NTS: N-terminal segments of PfEMP1; PDB: 2XU0_A 2YK0_A.
Probab=42.64 E-value=12 Score=25.13 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=12.9
Q ss_pred hhhhHHHhhhhhcccc
Q 027307 5 RERFDEIGKKIKREAD 20 (225)
Q Consensus 5 ~~~~~e~~k~ikre~~ 20 (225)
|+=||+|||.|+.+..
T Consensus 3 k~vLd~IG~~I~~~v~ 18 (37)
T PF15447_consen 3 KNVLDRIGKEIYKKVK 18 (37)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4559999999998754
No 32
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.81 E-value=42 Score=28.55 Aligned_cols=56 Identities=27% Similarity=0.294 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHHHhhcccC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 93 SQRADAANSLVYEANVRLRD--PVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 93 ~~R~dA~~SLvYEA~aR~rD--PVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
.||..+.+-==|-+++|++- =-..-=--=..|++||+.|..|+..++.|+..|+..
T Consensus 53 KQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k 110 (135)
T KOG4196|consen 53 KQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSK 110 (135)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777888887641 000000112357777777777777788787777653
No 33
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=41.75 E-value=56 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
.+.-+......+..|++|++.++.||..++.
T Consensus 38 ~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 38 AERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566666777888899999999998887754
No 34
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=41.21 E-value=56 Score=24.75 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
-.+..|+.+|+.++.++..++.++...+.+.+
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888888888887766543
No 35
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=41.01 E-value=82 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIK 144 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~ 144 (225)
|-..+..++.+|+..+++|+.++++|..
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~ 105 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAE 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888899999999998888865
No 36
>PLN02867 Probable galacturonosyltransferase
Probab=40.92 E-value=2.4e+02 Score=28.77 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCc
Q 027307 94 QRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160 (225)
Q Consensus 94 ~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A~~~~~~~~~~ 160 (225)
+..++|+-+++|+.-- -|-|.-++.+|+..++.+++++.+.+.|-..+..-.| ..+|-+.|=
T Consensus 117 ~~~~~~~~~~~~~~~~----~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa-~t~PK~lHC 178 (535)
T PLN02867 117 GSTESFNDLVKEMTSN----RQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLAS-HGIPKSLHC 178 (535)
T ss_pred hhhhHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCccc
Confidence 6889999999999763 4559999999999999999999999998888877777 777888763
No 37
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=39.33 E-value=78 Score=22.84 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
|.+...+.++......|+.++.+|..|.
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888889999999998885
No 38
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=38.72 E-value=70 Score=26.18 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 116 GCMGAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 116 GCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
..+++|..|+.+|..++.|+..++.+|.....
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~ 44 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEA 44 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888776643
No 39
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.64 E-value=57 Score=25.82 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
.+..+++|++.++++++.++++....+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~ 54 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLF 54 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666665555554444443
No 40
>smart00338 BRLZ basic region leucin zipper.
Probab=38.38 E-value=81 Score=22.19 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
+-|..|+.+...|+.++..++.++..++
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544
No 41
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=38.00 E-value=78 Score=24.15 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
.-|+++.||++++.+.-|.-.+|.+|...+..
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqE 37 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQE 37 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778889999988777766666666655544
No 42
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.52 E-value=97 Score=28.45 Aligned_cols=45 Identities=22% Similarity=0.150 Sum_probs=28.3
Q ss_pred HhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 106 ANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 106 A~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
|++++.+=|-+---.--.|-|.+--+++.|+.+..||+..+.+-+
T Consensus 28 Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~ 72 (233)
T COG3416 28 AEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIA 72 (233)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443334443334445666677777888888888888877665
No 43
>PF14282 FlxA: FlxA-like protein
Probab=36.94 E-value=58 Score=25.65 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
+..||.||..|+++|..++.+...-
T Consensus 53 ~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554433
No 44
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=36.87 E-value=69 Score=23.24 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
-|..+++++..+++|-..++.|+....
T Consensus 32 ~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 32 ELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455555555555555555555443
No 45
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=36.64 E-value=64 Score=25.35 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
|..|+.+.++++.|.+.+..|+..|+-+.-
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqk 61 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQK 61 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888888888888876644
No 46
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=35.91 E-value=34 Score=34.25 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=21.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 112 DPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 112 DPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
.|.....--|..|| ||+.|++||+.+++|+...
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhccc
Confidence 33333444455555 8999999999888887743
No 47
>PLN02769 Probable galacturonosyltransferase
Probab=34.30 E-value=1.9e+02 Score=30.09 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCc
Q 027307 94 QRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160 (225)
Q Consensus 94 ~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A~~~~~~~~~~ 160 (225)
++-..|..+++-|..-. |.|..++.+|++.++..+.|+...+.|-+..- |-|...+|-+.|=
T Consensus 239 ~~~~~m~~~~~~ak~~~----~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~-~laa~t~PK~lHC 300 (629)
T PLN02769 239 KKLEKMEQTIARAKSCP----VDCNNVDRKLRQILDMTEDEAHFHMKQSAFLY-QLGVQTMPKSHHC 300 (629)
T ss_pred HHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCccc
Confidence 55678888888776544 55999999999999999999997666555444 4444677777663
No 48
>PRK11677 hypothetical protein; Provisional
Probab=33.48 E-value=56 Score=27.34 Aligned_cols=40 Identities=30% Similarity=0.305 Sum_probs=0.0
Q ss_pred CcchhHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 027307 114 VYGCMGAISTLQ-----QQVQCLQAELNVVRNEIIKYKYREASNV 153 (225)
Q Consensus 114 VyGCvG~I~~Lq-----~QI~~lqaEL~~vr~eL~~~~~~~A~~~ 153 (225)
|...+|.+..-- ++...++.||+.++.+|..|+..-+.++
T Consensus 12 vG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HF 56 (134)
T PRK11677 12 VGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHF 56 (134)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 49
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=33.27 E-value=81 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027307 123 TLQQQVQCLQAELNVVRNEIIKYKYRE 149 (225)
Q Consensus 123 ~Lq~QI~~lqaEL~~vr~eL~~~~~~~ 149 (225)
.++++++.|+++|..++.++..++.+.
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777666543
No 50
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=32.52 E-value=53 Score=33.07 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 118 MGAISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 118 vG~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
.--|..||.||+.||.|+..+|.+|+.-
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~ 51 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAK 51 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3467888888888888888888887654
No 51
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=32.51 E-value=64 Score=26.38 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHhhhhhh
Q 027307 122 STLQQQVQCLQAELNVVR--------NEIIKYKYREA 150 (225)
Q Consensus 122 ~~Lq~QI~~lqaEL~~vr--------~eL~~~~~~~A 150 (225)
++++..|.+|+.||..++ .||.+|+..-.
T Consensus 3 sQmElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~ 39 (111)
T PF12001_consen 3 SQMELRIKDLESELSKMKTSQEDSNKTELEKYKQLYL 39 (111)
T ss_pred hHHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHH
Confidence 356666777777777765 78888887643
No 52
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.48 E-value=74 Score=28.54 Aligned_cols=31 Identities=39% Similarity=0.471 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 118 MGAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 118 vG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
.|-|+-|++|+...|+|++.=-++|...|.+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~q 39 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQ 39 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5899999999999999999876777666654
No 53
>PHA02047 phage lambda Rz1-like protein
Probab=31.09 E-value=1.1e+02 Score=24.88 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=21.5
Q ss_pred chhHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 116 GCMGAIST------LQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 116 GCvG~I~~------Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
|.+|.+.. -+...+++.++|+.++.++..|+.+
T Consensus 18 ~~y~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~ 56 (101)
T PHA02047 18 ASYGFVQSYRALGIAHEEAKRQTARLEALEVRYATLQRH 56 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555552 3446777777777777777777654
No 54
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=31.00 E-value=1.2e+02 Score=18.87 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027307 124 LQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 124 Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
.|..+..-|+||+.++.+++.+
T Consensus 3 Yqakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4566778888888888877654
No 55
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.65 E-value=63 Score=26.22 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 027307 129 QCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 129 ~~lqaEL~~vr~eL~~~~~~ 148 (225)
..++.||+.++.||..||..
T Consensus 28 ~~l~~eL~~~k~el~~yk~~ 47 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQE 47 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 56
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.20 E-value=91 Score=29.82 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=4.9
Q ss_pred hhHHHHHhhcch
Q 027307 70 KFASVHKVFGAS 81 (225)
Q Consensus 70 rFa~vhKvFG~S 81 (225)
+-..+.++||..
T Consensus 152 r~~il~~l~~~~ 163 (562)
T PHA02562 152 RRKLVEDLLDIS 163 (562)
T ss_pred HHHHHHHHhCCH
Confidence 333344444433
No 57
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.12 E-value=1.3e+02 Score=20.69 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
+..|+.++..|+.+...++.++...+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777766543
No 58
>PRK09039 hypothetical protein; Validated
Probab=28.84 E-value=88 Score=29.38 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
.|..|++||+.|+++|+.++.+|...
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444444444444433
No 59
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=27.58 E-value=1.1e+02 Score=22.24 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
-.+-.|+++++..+.++...+.++..|+
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999999988775
No 60
>PF14282 FlxA: FlxA-like protein
Probab=26.99 E-value=75 Score=25.01 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 027307 118 MGAISTLQQQVQCLQAELNVVRN 140 (225)
Q Consensus 118 vG~I~~Lq~QI~~lqaEL~~vr~ 140 (225)
-..|..|+.||..|+.+|..|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 55677777777777777766655
No 61
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=26.92 E-value=47 Score=30.83 Aligned_cols=35 Identities=20% Similarity=0.543 Sum_probs=26.8
Q ss_pred CCCCCCCChhhhHHHHHhhcchhHHHHHhcCCCcch
Q 027307 60 SPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQR 95 (225)
Q Consensus 60 APYFPad~~~rFa~vhKvFG~SNV~kmL~~lp~~~R 95 (225)
-||+|.. ++.-..+-+.||.++|-.++..+|.+.|
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIPHT-EEDIREMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCCCC-HHHHHHHHHHhCCCCHHHHHHhCCHHHH
Confidence 3899975 7888889999999999777666654333
No 62
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=25.93 E-value=1.1e+02 Score=23.73 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
|..|+.+..+|+.+|..+.+||..-+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667788888888888888777776544
No 63
>PRK04406 hypothetical protein; Provisional
Probab=25.83 E-value=2.8e+02 Score=20.84 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027307 122 STLQQQVQCLQAELNVVRNEIIK 144 (225)
Q Consensus 122 ~~Lq~QI~~lqaEL~~vr~eL~~ 144 (225)
-.|...|-.-+.+|..++.+|..
T Consensus 28 e~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 28 EELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444443333
No 64
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.79 E-value=1e+02 Score=25.89 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYKYRE 149 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~ 149 (225)
=+.--.+|+++++.+++||+..++++...+..-
T Consensus 64 eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~ 96 (161)
T PF04420_consen 64 EFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSF 96 (161)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566799999999999999999988877643
No 65
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=25.74 E-value=1.3e+02 Score=23.07 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEI 142 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL 142 (225)
.....|+.+++.++.+++.++.||
T Consensus 76 ~~~~ll~~~~~~l~~~i~~L~~~~ 99 (99)
T cd04772 76 SALALVDAAHALLQRYRQQLDQEL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 667788888888888888877664
No 66
>PLN02659 Probable galacturonosyltransferase
Probab=25.62 E-value=2.5e+02 Score=28.72 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCc
Q 027307 95 RADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160 (225)
Q Consensus 95 R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A~~~~~~~~~~ 160 (225)
=++.++-|+.|+.- =-|-|--++.+|++.++.+|.++...|.+-..|+.-.| ..+|-+.|=
T Consensus 114 ~~~~~~~~~~~~~~----~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa-~t~PK~lHC 174 (534)
T PLN02659 114 IPQTLEEFMDEVKN----SRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVAS-SSIPKQLHC 174 (534)
T ss_pred cchHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCccc
Confidence 34899999999876 34569999999999999999999998888777766566 667777663
No 67
>PRK11239 hypothetical protein; Provisional
Probab=25.22 E-value=1.1e+02 Score=27.87 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 118 MGAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 118 vG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
.+.+..|+.+|..|++|++.++++|.....+
T Consensus 182 ~~~~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 182 NAVDGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556779999999999999999998887653
No 68
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=25.12 E-value=30 Score=27.33 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.2
Q ss_pred HHHHhhcccCCCcchhHHHH
Q 027307 103 VYEANVRLRDPVYGCMGAIS 122 (225)
Q Consensus 103 vYEA~aR~rDPVyGCvG~I~ 122 (225)
-.+-..|..|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 55667899999999987644
No 69
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=24.68 E-value=1.7e+02 Score=30.08 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=6.6
Q ss_pred HHHHHHHHHhh
Q 027307 136 NVVRNEIIKYK 146 (225)
Q Consensus 136 ~~vr~eL~~~~ 146 (225)
+.|+.-|..|+
T Consensus 245 ~~Vk~ALq~Yq 255 (574)
T PF07462_consen 245 AEVKEALQAYQ 255 (574)
T ss_pred HHHHHHHHHHH
Confidence 44666666664
No 70
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.62 E-value=1.6e+02 Score=22.50 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKYRE 149 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~ 149 (225)
..+..|+++|+.+++++..++.++..|...-
T Consensus 6 ~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~ 36 (129)
T cd00890 6 AQLQQLQQQLEALQQQLQKLEAQLTEYEKAK 36 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888888888888776543
No 71
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.48 E-value=1e+02 Score=22.44 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
|-.|...|-.-+.+|..++.+|....
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 72
>PLN02718 Probable galacturonosyltransferase
Probab=24.43 E-value=2.8e+02 Score=28.81 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCc
Q 027307 94 QRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160 (225)
Q Consensus 94 ~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A~~~~~~~~~~ 160 (225)
++-..|..+++.|.- =-|.|-.++.+|.+.+...+.++...+.+-+.+..-.| ..+|-+.|=
T Consensus 222 ~~~~~m~~~~~~a~~----~~~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa-~~~PK~lhC 283 (603)
T PLN02718 222 QRMKSMEVTLYKASR----VFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAA-RTTPKGLHC 283 (603)
T ss_pred HHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCccc
Confidence 455778888876654 45669999999999999999999999998887777776 777888763
No 73
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.31 E-value=1.5e+02 Score=24.10 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
.-...|+++++..+.||+.-|+++..|-...|
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta 56 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQEVNDHFAQTA 56 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999877766
No 74
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=24.14 E-value=80 Score=31.47 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=24.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 114 VYGCMGAISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 114 VyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
+-||-.-| .||++|++|++||.+++.-..+|
T Consensus 414 ~qGCpRC~-~LQkEIedLreQLaamqsl~~kf 444 (445)
T PF15483_consen 414 AQGCPRCL-VLQKEIEDLREQLAAMQSLADKF 444 (445)
T ss_pred CCCCcccH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666554 58999999999999998876665
No 75
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.09 E-value=1.4e+02 Score=23.67 Aligned_cols=27 Identities=26% Similarity=0.140 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
|..++++++.++++.+.++.|+...+.
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344555566666666666666665554
No 76
>PRK01203 prefoldin subunit alpha; Provisional
Probab=23.63 E-value=1.3e+02 Score=25.10 Aligned_cols=28 Identities=0% Similarity=0.255 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
-+..|++|++.+++||..++..+..+..
T Consensus 8 ~~~~~~~q~e~l~~ql~~L~~a~se~~~ 35 (130)
T PRK01203 8 QLNYIESLISSVDSQIDSLNKTLSEVQQ 35 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888877777743
No 77
>PRK00295 hypothetical protein; Provisional
Probab=23.56 E-value=1.5e+02 Score=21.73 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027307 123 TLQQQVQCLQAELNVVRNEIIK 144 (225)
Q Consensus 123 ~Lq~QI~~lqaEL~~vr~eL~~ 144 (225)
.|...|-.-+.+|..++.+|..
T Consensus 23 ~Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 23 ALNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444433333
No 78
>PRK04325 hypothetical protein; Provisional
Probab=23.44 E-value=2.3e+02 Score=21.13 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027307 124 LQQQVQCLQAELNVVRN 140 (225)
Q Consensus 124 Lq~QI~~lqaEL~~vr~ 140 (225)
.|++|..++.+|..+..
T Consensus 35 Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 35 QQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 79
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=23.40 E-value=1e+02 Score=23.70 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=20.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 113 PVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 113 PVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
||.|.+-+.-+++.+.+.---+-+.+|.+|......
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~~ 43 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAELQEA 43 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 565555555555555544333455688888765443
No 80
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.34 E-value=1.5e+02 Score=23.15 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
.+..|+++++.+++++..++..+..|...-.
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~ 37 (129)
T cd00584 7 QLQVLQQEIEELQQELARLNEAIAEYEQAKE 37 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888888877777755433
No 81
>smart00150 SPEC Spectrin repeats.
Probab=23.02 E-value=2.1e+02 Score=19.78 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=32.3
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 111 RDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 111 rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
.+++.+.+..|..+.++.+.++.++...+..+........
T Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~ 62 (101)
T smart00150 23 SEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGE 62 (101)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3566688999999999999999999988888887766543
No 82
>PRK00846 hypothetical protein; Provisional
Probab=22.82 E-value=3.2e+02 Score=20.95 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIK 144 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~ 144 (225)
|-.|...|...+.++..++.+|..
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~ 52 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRH 52 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 83
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.63 E-value=1.9e+02 Score=20.29 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
.|..|+.++..|+.+...++.++..++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666665543
No 84
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.60 E-value=1.8e+02 Score=22.62 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
.+..|+++++.+++++..++..+..|+..
T Consensus 7 q~~ql~~~i~~l~~~i~~l~~~i~e~~~~ 35 (126)
T TIGR00293 7 ELQILQQQVESLQAQIAALRALIAELETA 35 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777766543
No 85
>PF10685 KGG: Stress-induced bacterial acidophilic repeat motif; InterPro: IPR019626 This repeat contains a highly conserved, characteristic sequence motif, KGG, that is recognised by plants and lower eukaryotes. Further downstream from this motif is a Walker A, nucleotide binding motif. YciG is expressed as part of a three-gene operon, yciGFE and this operon is induced by stress and is regulated by RpoS, which controls the general stress-response in E coli. YciG was shown to be important for stationary-phase resistance to thermal stress and in particular to acid stress [].
Probab=22.54 E-value=50 Score=20.14 Aligned_cols=13 Identities=46% Similarity=0.670 Sum_probs=10.0
Q ss_pred cchhhhhHHHhhh
Q 027307 2 SRERERFDEIGKK 14 (225)
Q Consensus 2 s~~~~~~~e~~k~ 14 (225)
++++|+..|||+|
T Consensus 4 ~~d~e~~~eig~k 16 (23)
T PF10685_consen 4 SMDPEKAREIGRK 16 (23)
T ss_pred ccCHHHHHHHHHh
Confidence 3577888899975
No 86
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.51 E-value=1.5e+02 Score=22.42 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
.|..|+.++..++++++.++.+++..
T Consensus 78 ~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 78 ELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778888888888888888877653
No 87
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=22.46 E-value=77 Score=23.65 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.7
Q ss_pred hhHHHHHhcC--CCcchHHHHHHHHHHHh
Q 027307 81 SNVSKMLNDV--PESQRADAANSLVYEAN 107 (225)
Q Consensus 81 SNV~kmL~~l--p~~~R~dA~~SLvYEA~ 107 (225)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 5788999988 67889999999999985
No 88
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.42 E-value=1.4e+02 Score=24.72 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKYRE 149 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~ 149 (225)
--|..|+.++..++.+|+.+..+|...+...
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888888776543
No 89
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.15 E-value=1.7e+02 Score=21.78 Aligned_cols=22 Identities=9% Similarity=0.342 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027307 121 ISTLQQQVQCLQAELNVVRNEI 142 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL 142 (225)
|...|++|..++.+|..+..+|
T Consensus 31 v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 31 VTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 90
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.13 E-value=1.7e+02 Score=24.03 Aligned_cols=29 Identities=34% Similarity=0.558 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
|-|..|++++..++++-+.+++||...-.
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~ 58 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLME 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999988888888876543
No 91
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=22.00 E-value=1.1e+02 Score=29.07 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=30.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 114 VYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 114 VyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
|-|-.--...|+.+|.++|+|+..++.-|.+|+.--.
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455578999999999999999999999997544
No 92
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.81 E-value=1.7e+02 Score=25.73 Aligned_cols=34 Identities=6% Similarity=0.212 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
-+.-|..++++|.+++.||+.++.++..+..+-+
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788999999999999999999999998877655
No 93
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.42 E-value=1.6e+02 Score=23.18 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
+..++.++..|+.+|..++.|+...
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diL 97 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544444433
No 94
>PRK14127 cell division protein GpsB; Provisional
Probab=21.14 E-value=2.2e+02 Score=23.14 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
+-.|..++..|+.++..++.+|..|+.+..
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344566666777777777777776665443
No 95
>PRK04406 hypothetical protein; Provisional
Probab=21.07 E-value=1.8e+02 Score=21.93 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 120 AISTLQQQVQCLQAELNVVRNEII 143 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~ 143 (225)
+|...|++|..++.+|..+..+|.
T Consensus 33 ~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 33 ALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666655554
No 96
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.95 E-value=2e+02 Score=21.02 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIK 144 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~ 144 (225)
|.+|++.|+.++.++..++.|-+.
T Consensus 19 vdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 19 VDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555443
No 97
>PLN02870 Probable galacturonosyltransferase
Probab=20.63 E-value=3.1e+02 Score=28.06 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCc
Q 027307 97 DAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160 (225)
Q Consensus 97 dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A~~~~~~~~~~ 160 (225)
+.++-++-|| ++=-|-|--++.+|+..+..+++++...+.+-..+.+-.| ..+|-+.|=
T Consensus 115 ~s~~~~~~~~----~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~laa-~t~PK~lHC 173 (533)
T PLN02870 115 DSFSQLVSDM----KNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNKHFAA-SSIPKGIHC 173 (533)
T ss_pred hhHHHHHHHH----HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCccc
Confidence 4455555544 4466779999999999999999999999999988887777 777888764
No 98
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=20.56 E-value=60 Score=21.02 Aligned_cols=15 Identities=20% Similarity=0.758 Sum_probs=10.2
Q ss_pred CCChhhhhhhcCCCC
Q 027307 41 TPCAACKLLRRRCAQ 55 (225)
Q Consensus 41 ~~CAACK~lRRrC~~ 55 (225)
++|..|+..+.+|..
T Consensus 1 ~aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 1 RACDRCRRRKVKCDG 15 (40)
T ss_dssp -SBHHHHHHTS--ST
T ss_pred CcChHHHhhCcCcCC
Confidence 478889999999876
No 99
>PRK02119 hypothetical protein; Provisional
Probab=20.47 E-value=1.9e+02 Score=21.60 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027307 123 TLQQQVQCLQAELNVVRNEII 143 (225)
Q Consensus 123 ~Lq~QI~~lqaEL~~vr~eL~ 143 (225)
.|...|-.-+.+|..++.+|.
T Consensus 27 ~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 27 ELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 100
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=20.43 E-value=2.3e+02 Score=19.82 Aligned_cols=29 Identities=28% Similarity=0.195 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
-+++|..|++.|++-|..+.+.|..--.|
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~s~Q 31 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMTSIQ 31 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 36788899999999999888888765444
No 101
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=20.40 E-value=5e+02 Score=21.54 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
|=..+..+.++|++++..|..+.++|...-
T Consensus 19 cE~kL~~~e~~Lq~~E~~l~iLEaKL~SIp 48 (148)
T PF10152_consen 19 CEEKLSDMEQRLQRLEATLNILEAKLSSIP 48 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666788899999999999999999886553
No 102
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=20.24 E-value=96 Score=28.10 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=16.6
Q ss_pred CCcchHHHHHHHHHHHhhcccCCCcchhHHH
Q 027307 91 PESQRADAANSLVYEANVRLRDPVYGCMGAI 121 (225)
Q Consensus 91 p~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I 121 (225)
.-++....-.+|=||-+ |||-|.+-.-
T Consensus 123 sT~DQ~~FYe~lGYe~c----~Pi~~~~~~~ 149 (225)
T KOG3397|consen 123 STDDQCRFYESLGYEKC----DPIVHSTTAT 149 (225)
T ss_pred ecccchhhhhhhccccc----Cceecccccc
Confidence 34455556777777755 5777765443
No 103
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.09 E-value=1.5e+02 Score=27.39 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=30.7
Q ss_pred HHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 105 EANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 105 EA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
|-..|.+|+ =-.-.+..+|+++++|++|+..+.+.+..|+
T Consensus 45 ~~~~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 45 ESVRRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred cchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444 4566788899999999999999999999988
Done!