Query 027307
Match_columns 225
No_of_seqs 129 out of 319
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 87.5 0.77 2.6E-05 29.1 3.9 29 119-147 2-30 (33)
2 2er8_A Regulatory protein Leu3 79.5 4 0.00014 27.8 5.3 21 119-139 49-69 (72)
3 3nmd_A CGMP dependent protein 63.6 10 0.00036 27.9 4.6 29 119-147 40-68 (72)
4 2xdj_A Uncharacterized protein 63.0 10 0.00036 28.1 4.6 30 119-148 20-49 (83)
5 1am9_A Srebp-1A, protein (ster 60.9 13 0.00045 26.9 4.7 30 117-146 48-77 (82)
6 1zme_C Proline utilization tra 60.4 7.9 0.00027 26.0 3.3 25 119-143 44-68 (70)
7 1nkp_B MAX protein, MYC proto- 59.3 16 0.00054 26.1 4.9 34 117-150 45-78 (83)
8 3r4h_A Coiled coil helix CC-TE 57.7 14 0.00047 23.5 3.7 29 119-147 2-30 (34)
9 1zxa_A CGMP-dependent protein 53.6 17 0.00059 26.3 4.3 28 120-147 26-53 (67)
10 2yy0_A C-MYC-binding protein; 52.1 14 0.00048 25.2 3.4 26 121-146 21-46 (53)
11 2zvf_A Alanyl-tRNA synthetase; 48.7 57 0.002 25.3 7.0 48 100-147 13-60 (171)
12 1hlo_A Protein (transcription 48.7 17 0.00059 25.9 3.6 25 117-141 55-79 (80)
13 4e61_A Protein BIM1; EB1-like 46.5 31 0.0011 27.0 5.0 33 116-148 1-33 (106)
14 3ra3_B P2F; coiled coil domain 46.0 23 0.00078 21.6 3.2 25 121-145 2-26 (28)
15 3iot_A Maltose-binding protein 45.3 6.3 0.00021 34.7 1.0 7 140-146 382-388 (449)
16 2l5g_B Putative uncharacterize 40.5 41 0.0014 22.5 4.1 27 123-149 6-32 (42)
17 2dgc_A Protein (GCN4); basic d 38.5 48 0.0017 23.1 4.5 30 119-148 30-59 (63)
18 2wt7_B Transcription factor MA 37.0 43 0.0015 25.4 4.3 55 94-148 28-84 (90)
19 1uuj_A Platelet-activating fac 37.0 14 0.00049 28.0 1.6 25 120-144 59-83 (88)
20 1rtm_1 Mannose-binding protein 36.9 33 0.0011 25.6 3.7 21 121-141 6-26 (149)
21 1dh3_A Transcription factor CR 36.2 55 0.0019 22.2 4.4 29 119-147 22-50 (55)
22 3trt_A Vimentin; cytoskeleton, 35.7 32 0.0011 24.0 3.3 21 119-139 56-76 (77)
23 3myf_A Sensor protein; HPT, hi 34.9 1.1E+02 0.0037 23.0 6.4 59 71-137 53-111 (119)
24 3pbf_A Pulmonary surfactant-as 34.8 33 0.0011 25.3 3.4 25 120-144 3-27 (148)
25 3q0x_A Centriole protein; cent 33.9 45 0.0016 28.9 4.6 31 120-150 179-209 (228)
26 3gpv_A Transcriptional regulat 33.9 42 0.0014 26.2 4.0 31 120-150 103-133 (148)
27 2yy0_A C-MYC-binding protein; 33.7 64 0.0022 21.9 4.4 27 119-145 26-52 (53)
28 1buu_A Protein (mannose-bindin 31.3 35 0.0012 26.3 3.1 24 117-140 21-44 (168)
29 1nlw_A MAD protein, MAX dimeri 30.1 87 0.003 22.6 4.9 31 118-148 46-76 (80)
30 2wg5_A General control protein 29.3 52 0.0018 24.9 3.7 30 121-150 9-38 (109)
31 2ke4_A CDC42-interacting prote 28.7 61 0.0021 24.5 4.0 60 88-150 9-86 (98)
32 3kqg_A Langerin, C-type lectin 27.3 85 0.0029 24.0 4.7 25 119-143 16-40 (182)
33 3i00_A HIP-I, huntingtin-inter 26.4 63 0.0021 25.4 3.8 22 120-141 41-62 (120)
34 1gk6_A Vimentin; intermediate 26.3 77 0.0026 21.6 3.8 23 123-145 4-26 (59)
35 1x8y_A Lamin A/C; structural p 26.1 81 0.0028 22.9 4.2 26 120-145 29-54 (86)
36 1jcd_A Major outer membrane li 26.0 1.1E+02 0.0038 20.9 4.6 23 121-143 13-35 (52)
37 2wt7_A Proto-oncogene protein 26.0 1E+02 0.0034 21.1 4.4 26 121-146 25-50 (63)
38 1ic2_A Tropomyosin alpha chain 25.9 78 0.0027 22.6 4.0 48 95-146 21-68 (81)
39 2wt7_B Transcription factor MA 25.4 1.9E+02 0.0064 21.8 6.1 27 120-146 49-75 (90)
40 3u1c_A Tropomyosin alpha-1 cha 25.4 84 0.0029 23.5 4.2 30 117-146 42-71 (101)
41 3mq7_A Bone marrow stromal ant 25.4 97 0.0033 24.8 4.7 29 118-146 77-105 (121)
42 1bb1_B Designed, thermostable 24.7 1.4E+02 0.0048 19.0 4.6 30 121-150 4-33 (36)
43 1gk4_A Vimentin; intermediate 24.0 96 0.0033 22.4 4.2 40 99-145 13-52 (84)
44 1t2k_D Cyclic-AMP-dependent tr 23.9 1.4E+02 0.0047 20.1 4.7 23 121-143 24-46 (61)
45 3ra3_A P1C; coiled coil domain 23.6 65 0.0022 19.6 2.6 23 124-146 5-27 (28)
46 1ci6_A Transcription factor AT 23.5 1.1E+02 0.0039 21.0 4.3 27 120-146 31-57 (63)
47 3lbx_A Spectrin alpha chain, e 23.4 1.4E+02 0.0047 23.2 5.3 59 99-158 68-126 (161)
48 3w03_C DNA repair protein XRCC 23.1 1.1E+02 0.0037 25.8 4.9 32 116-147 149-180 (184)
49 1rtm_1 Mannose-binding protein 23.0 82 0.0028 23.4 3.8 25 124-148 2-26 (149)
50 1urf_A Protein kinase C-like 1 23.0 1.8E+02 0.0063 21.7 5.6 45 77-144 24-68 (81)
51 3iqt_A Signal transduction his 22.8 1.3E+02 0.0045 22.8 5.0 60 71-145 62-121 (123)
52 2pbi_A Regulator of G-protein 22.5 37 0.0013 31.6 2.1 83 68-150 143-257 (424)
53 2xv5_A Lamin-A/C; structural p 22.3 1.1E+02 0.0038 22.0 4.2 24 122-145 8-31 (74)
54 1yhn_B RILP, RAB interacting l 22.1 1.2E+02 0.0042 21.8 4.3 24 126-149 10-33 (65)
55 1gu4_A CAAT/enhancer binding p 21.9 1.2E+02 0.004 22.2 4.3 28 120-147 44-71 (78)
56 1buu_A Protein (mannose-bindin 21.9 92 0.0031 23.9 4.0 31 117-147 14-44 (168)
57 2y9y_A Imitation switch protei 21.8 4.1E+02 0.014 24.6 8.8 78 69-150 132-215 (374)
58 1hjb_A Ccaat/enhancer binding 21.5 1.2E+02 0.004 22.6 4.3 28 120-147 44-71 (87)
59 3bbp_D GRIP and coiled-coil do 21.4 1.1E+02 0.0039 22.4 4.0 55 73-138 7-62 (71)
60 2elu_A Zinc finger protein 406 21.0 29 0.001 22.4 0.7 17 32-48 1-17 (37)
61 1jnm_A Proto-oncogene C-JUN; B 21.0 1.3E+02 0.0045 20.3 4.2 29 120-148 23-51 (62)
62 1a93_B MAX protein, coiled coi 20.9 1.3E+02 0.0045 19.2 3.8 22 121-142 9-30 (34)
63 2wt7_A Proto-oncogene protein 20.7 1.4E+02 0.0048 20.3 4.3 29 119-147 30-58 (63)
64 3viq_B Mating-type switching p 20.7 59 0.002 24.4 2.5 24 123-146 5-28 (85)
65 3twe_A Alpha4H; unknown functi 20.5 1.2E+02 0.0042 18.2 3.4 21 122-142 4-24 (27)
66 1jcd_A Major outer membrane li 20.4 1.4E+02 0.0047 20.4 4.1 23 121-143 20-42 (52)
67 1t2k_D Cyclic-AMP-dependent tr 20.4 1.9E+02 0.0065 19.4 4.9 28 120-147 30-57 (61)
68 1jnm_A Proto-oncogene C-JUN; B 20.0 1.9E+02 0.0066 19.4 4.9 30 118-147 28-57 (62)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=87.45 E-value=0.77 Score=29.08 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
|.|..|+|+|..++.|+++++-||+..++
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67889999999999999999999987664
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=79.49 E-value=4 Score=27.82 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027307 119 GAISTLQQQVQCLQAELNVVR 139 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr 139 (225)
+.|..|+++|+.|+..|..++
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777776554
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.56 E-value=10 Score=27.86 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
..|..|+.+|+...+++..++.+|-+|+.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46889999999999999999999999963
No 4
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=63.02 E-value=10 Score=28.13 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
..+..|++||+.++.|+..+|+++....+.
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~ 49 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQ 49 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356788999999999998888877755443
No 5
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=60.94 E-value=13 Score=26.87 Aligned_cols=30 Identities=30% Similarity=0.253 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
.+-.|..||++++.|+.|+..++.++...+
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 367899999999999999999999887653
No 6
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=60.41 E-value=7.9 Score=25.99 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEII 143 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~ 143 (225)
+.|..|+++|..|+.+|..++..|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688899999999999998887654
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=59.26 E-value=16 Score=26.14 Aligned_cols=34 Identities=6% Similarity=0.097 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
.+-.|..|+++++.++.|++.++.+....+.+-+
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999988887766543
No 8
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=57.75 E-value=14 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.482 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
|.+..++|++..++.||+.++-||+..++
T Consensus 2 gelaaikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555677777777777777777776654
No 9
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=53.64 E-value=17 Score=26.26 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
.|..|+..++.-++++..++.+|.+|+.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999974
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.10 E-value=14 Score=25.25 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
+-.|++++..|+++++.++.++...+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443
No 11
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=48.70 E-value=57 Score=25.33 Aligned_cols=48 Identities=15% Similarity=0.085 Sum_probs=35.5
Q ss_pred HHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 100 NSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 100 ~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
..++.+......-+..--...|..|+.++..++.|++.++.+++.+..
T Consensus 13 ~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~ 60 (171)
T 2zvf_A 13 ERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWA 60 (171)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444567788889999999999999999999988753
No 12
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=48.68 E-value=17 Score=25.89 Aligned_cols=25 Identities=8% Similarity=0.227 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNE 141 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~e 141 (225)
.+-.|..|+++++.++.+++.++.|
T Consensus 55 Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 55 ATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999888887764
No 13
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=46.48 E-value=31 Score=26.97 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 116 GCMGAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 116 GCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
|..|.+..||.++...++++..+..++..++..
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ 33 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYKGT 33 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888887777777777777666554
No 14
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=46.02 E-value=23 Score=21.60 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
|..|+|+...++.|++++.-||+..
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888889999999888887754
No 15
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=45.27 E-value=6.3 Score=34.65 Aligned_cols=7 Identities=0% Similarity=0.406 Sum_probs=2.7
Q ss_pred HHHHHhh
Q 027307 140 NEIIKYK 146 (225)
Q Consensus 140 ~eL~~~~ 146 (225)
.++..++
T Consensus 382 ~~~~~~~ 388 (449)
T 3iot_A 382 ESLKSFQ 388 (449)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 3334343
No 16
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.50 E-value=41 Score=22.48 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027307 123 TLQQQVQCLQAELNVVRNEIIKYKYRE 149 (225)
Q Consensus 123 ~Lq~QI~~lqaEL~~vr~eL~~~~~~~ 149 (225)
.|-|+|..+-.|++.++++|..++...
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999988887653
No 17
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.49 E-value=48 Score=23.06 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
..|..|+.++..|+.+...++.++...+.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888988888888888888877643
No 18
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=37.02 E-value=43 Score=25.37 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHhhccc--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 94 QRADAANSLVYEANVRLR--DPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 94 ~R~dA~~SLvYEA~aR~r--DPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
++.-...-=.|-+++|.+ +=+..--.-+..|+.+++.|..|+..++.|+..|+..
T Consensus 28 q~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677788888765 2223333445555556666666666666666665543
No 19
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=37.00 E-value=14 Score=27.96 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIK 144 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~ 144 (225)
.|-.||.+|.+|++++..+++||..
T Consensus 59 SViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 59 SVIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667999999999999999988864
No 20
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=36.94 E-value=33 Score=25.64 Aligned_cols=21 Identities=10% Similarity=0.422 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027307 121 ISTLQQQVQCLQAELNVVRNE 141 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~e 141 (225)
|..|+++++.||.+|..++..
T Consensus 6 l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 555666666666666666554
No 21
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=36.25 E-value=55 Score=22.18 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
-.|..|+.++..|+.|...++.++...+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888899888888888876653
No 22
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=35.67 E-value=32 Score=24.02 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027307 119 GAISTLQQQVQCLQAELNVVR 139 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr 139 (225)
--|..|.++|+.|+.||..++
T Consensus 56 ~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 56 QESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 346667777777777776654
No 23
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=34.87 E-value=1.1e+02 Score=23.00 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=30.8
Q ss_pred hHHHHHhhcchhHHHHHhcCCCcchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHH
Q 027307 71 FASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNV 137 (225)
Q Consensus 71 Fa~vhKvFG~SNV~kmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~ 137 (225)
+..+||+-|.+..+..- . -..-+...|..+|..+++-..-..+..|..+|..+..++..
T Consensus 53 ~~~aHkLkGaa~~~Ga~------~--L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~ 111 (119)
T 3myf_A 53 LSTIHKLHGASCYCGVP------T--TQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQ 111 (119)
T ss_dssp HHHHHHHHHHHTTTTCH------H--HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHH------H--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888876544321 0 11223345666777777655555555555544444444433
No 24
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=34.79 E-value=33 Score=25.34 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIK 144 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~ 144 (225)
++-.|+++++.|+.+|..++..|..
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~~ 27 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLSL 27 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999998888854
No 25
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=33.89 E-value=45 Score=28.94 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
-...|++.+++.++|.++.+++|+.+|.+.|
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~ 209 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLA 209 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888899999999999999999988877
No 26
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.88 E-value=42 Score=26.23 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
.+..|+++|+.++..++.+...|..|+....
T Consensus 103 ~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 133 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKIQQKIAKYEDEIS 133 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666666655443
No 27
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.68 E-value=64 Score=21.90 Aligned_cols=27 Identities=7% Similarity=0.319 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
.-+..|+.+++.|+++++.++.+|..|
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346788999999999999999888765
No 28
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=31.26 E-value=35 Score=26.31 Aligned_cols=24 Identities=8% Similarity=0.314 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRN 140 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~ 140 (225)
+-..|..|+.||+.|+.+|..++.
T Consensus 21 ~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 21 IEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566677777777777776665
No 29
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=30.05 E-value=87 Score=22.56 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 118 MGAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 118 vG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
+..|..|+++...++.|++.++.+....+.+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998888877655443
No 30
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=29.34 E-value=52 Score=24.94 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
..+|+.+++.++.|+..++.||...+.+.-
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P~ 38 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPPL 38 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 457899999999999999999999886543
No 31
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.69 E-value=61 Score=24.55 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred hcCCCcchHHHHHHHHHH------------------HhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027307 88 NDVPESQRADAANSLVYE------------------ANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYRE 149 (225)
Q Consensus 88 ~~lp~~~R~dA~~SLvYE------------------A~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~ 149 (225)
.+||+++|...+..-|-| -++=..||-+|=...+ +.+|..+...|+.++.++.+|...-
T Consensus 9 s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~---~~~L~e~~~kid~L~~el~K~q~~L 85 (98)
T 2ke4_A 9 SHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL---EPQIAETLSNIERLKLEVQKYEAWL 85 (98)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGS---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 027307 150 A 150 (225)
Q Consensus 150 A 150 (225)
+
T Consensus 86 ~ 86 (98)
T 2ke4_A 86 A 86 (98)
T ss_dssp H
T ss_pred H
No 32
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=27.25 E-value=85 Score=23.97 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEII 143 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~ 143 (225)
..+..|+.+|+.||.+|..+++.|.
T Consensus 16 ~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 16 EKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777766666554
No 33
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.37 E-value=63 Score=25.36 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027307 120 AISTLQQQVQCLQAELNVVRNE 141 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~e 141 (225)
+|..|+.+|..|++||+..+.+
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 34
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=26.32 E-value=77 Score=21.63 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027307 123 TLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 123 ~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
.+|.+|..++++|..++++++..
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q 26 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARL 26 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555433
No 35
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.14 E-value=81 Score=22.93 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
-+..+|.+|..++++|..+|.++..+
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777666654
No 36
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=26.01 E-value=1.1e+02 Score=20.89 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027307 121 ISTLQQQVQCLQAELNVVRNEII 143 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~ 143 (225)
|..|..+|..|+.++..++.++.
T Consensus 13 V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.00 E-value=1e+02 Score=21.12 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
|..|+.++..|+.+-..++.+|...+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666655555555555554443
No 38
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.90 E-value=78 Score=22.59 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 95 RADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 95 R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
|.+.++.-+=+++-|.. -.-.-|..|+..|+.++.+|+.+...|....
T Consensus 21 ~~~~~e~~l~~~e~~~~----~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSK----QLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444331 1335678888889999999888888776543
No 39
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.45 E-value=1.9e+02 Score=21.79 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
.+..|+.++..++.|++.++.|+....
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666667777666666554
No 40
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=25.45 E-value=84 Score=23.46 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
.=.-|..|+.+|+.++.+|..++..|...+
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999988888887654
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.44 E-value=97 Score=24.79 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 118 MGAISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 118 vG~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
-|-|-.|.++|+...+|++.+|.+.....
T Consensus 77 qgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 77 EGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 45666666666666666666666555443
No 42
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=24.67 E-value=1.4e+02 Score=18.99 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 121 ISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
|..++.+-...+.|+.+++.|++..++.-|
T Consensus 4 iaaikeeqaaieeeiqaikeeiaaikylia 33 (36)
T 1bb1_B 4 IAAIKEEQAAIEEEIQAIKEEIAAIKYLIA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566778888888888888776544
No 43
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.97 E-value=96 Score=22.35 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 99 ANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 99 ~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
...-+-|+..|... .+..+|.+|..++++|..+|.+++.+
T Consensus 13 LE~~l~e~e~~~~~-------~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 13 LERQMREMEENFAV-------EAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455554322 34556666666666666666665544
No 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.94 E-value=1.4e+02 Score=20.13 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027307 121 ISTLQQQVQCLQAELNVVRNEII 143 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~ 143 (225)
|..|+.++..++.+-..++.++.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333
No 45
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.62 E-value=65 Score=19.58 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 027307 124 LQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 124 Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
|+-+...++..++++++.|+..+
T Consensus 5 lefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhc
Confidence 44445556666666666666543
No 46
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.51 E-value=1.1e+02 Score=20.98 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
-+..|+.+...|+.++..++.|+...+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665554
No 47
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=23.41 E-value=1.4e+02 Score=23.21 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCC
Q 027307 99 ANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSH 158 (225)
Q Consensus 99 ~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A~~~~~~~~ 158 (225)
+..-+.|...-+.|+.||-...|..|.++-+.+++||.+.+..+........ .++...|
T Consensus 68 l~~Wi~ek~~~a~~~~~~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~-~Li~~~~ 126 (161)
T 3lbx_A 68 LGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTRE-ERFTMGH 126 (161)
T ss_dssp HHHHHHHHHHHHHTTSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSCTTC
T ss_pred HHHHHHHHhhhccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCC
Confidence 3344556666677888899999999999999999999998887777655443 5665554
No 48
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.09 E-value=1.1e+02 Score=25.80 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 116 GCMGAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 116 GCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
.|++.|..|+.++..|+.|.+.++.|......
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38888899999998888888888887765543
No 49
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=23.04 E-value=82 Score=23.38 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 124 LQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 124 Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
|+++|+.|+.+|..++.+|..++..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7889999999999999999887764
No 50
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=22.97 E-value=1.8e+02 Score=21.67 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=32.5
Q ss_pred hhcchhHHHHHhcCCCcchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 77 VFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIK 144 (225)
Q Consensus 77 vFG~SNV~kmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~ 144 (225)
--|+.|+++++.+....+|.-.. | -|+.+++-+..++.+|.+|.+
T Consensus 24 K~GAENmi~~y~~g~~~drKlLa-----e------------------AQqmL~DSk~KIe~lRmqI~k 68 (81)
T 1urf_A 24 KQGAENMIQTYSNGSTKDRKLLL-----T------------------AQQMLQDSKTKIDIIRMQLRR 68 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHH-----H------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchhHHHHH-----H------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999887775432 2 255666677777777777755
No 51
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=22.77 E-value=1.3e+02 Score=22.78 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=35.1
Q ss_pred hHHHHHhhcchhHHHHHhcCCCcchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 71 FASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 71 Fa~vhKvFG~SNV~kmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
...+||+-|.+..+.. ..-..-+...|..+|..+++. .++..+..|+.|+..|..+...|
T Consensus 62 ~~~aHkLkGaa~~~Ga--------~~L~~~c~~LE~~~r~g~~~~-------~l~~~l~~L~del~~v~~~~~~~ 121 (123)
T 3iqt_A 62 VDLIHKLHGSCGYSGV--------PRMKNLCQLIEQQLRSGTKEE-------DLEPELLELLDEMDNVAREASKI 121 (123)
T ss_dssp HHHHHHHHHHHTTSCC--------HHHHHHHHHHHHHHHTTCCGG-------GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446777776654321 111223345677777777754 55556666777777777776655
No 52
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=22.47 E-value=37 Score=31.59 Aligned_cols=83 Identities=10% Similarity=0.148 Sum_probs=54.1
Q ss_pred hhhhHHHHHhhcchhHHHHHh---cCCCcchHHHHHHHHHHHh----hcccCCCcchhHH------------------HH
Q 027307 68 PQKFASVHKVFGASNVSKMLN---DVPESQRADAANSLVYEAN----VRLRDPVYGCMGA------------------IS 122 (225)
Q Consensus 68 ~~rFa~vhKvFG~SNV~kmL~---~lp~~~R~dA~~SLvYEA~----aR~rDPVyGCvG~------------------I~ 122 (225)
.+.++.++|.|...+-.=+++ ++..+++.+-..-+|++.+ +++.-|+.||+-. +.
T Consensus 143 ~e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~ 222 (424)
T 2pbi_A 143 KENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVT 222 (424)
T ss_dssp HHHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHH
T ss_pred HHHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHH
Confidence 456777888887666665555 3334444455666677655 7889999998743 46
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhhhhhh
Q 027307 123 TLQQQVQCLQAELNV-------VRNEIIKYKYREA 150 (225)
Q Consensus 123 ~Lq~QI~~lqaEL~~-------vr~eL~~~~~~~A 150 (225)
.++.+|++|+.+|.. +-++|..|..+.+
T Consensus 223 ~~r~~veqLk~~l~~~rikvS~~~e~l~~y~e~~~ 257 (424)
T 2pbi_A 223 AVRKEIMYYQQALMRSTVKSSVSLGGIVKYSEQFS 257 (424)
T ss_dssp HHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcccceeHHHHHHHHHHHHHhhc
Confidence 677888888877743 3345666665554
No 53
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=22.26 E-value=1.1e+02 Score=22.04 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 122 STLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 122 ~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
..+|.+|..++++|..++++++..
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~q 31 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQ 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 54
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=22.13 E-value=1.2e+02 Score=21.80 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 027307 126 QQVQCLQAELNVVRNEIIKYKYRE 149 (225)
Q Consensus 126 ~QI~~lqaEL~~vr~eL~~~~~~~ 149 (225)
++-+.|++.|-.++.||+.|+.-.
T Consensus 10 qERNELKa~vf~lqeEL~yY~~e~ 33 (65)
T 1yhn_B 10 QERNELKAKVFLLKEELAYFQREL 33 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456788999999999999998743
No 55
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.89 E-value=1.2e+02 Score=22.16 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
-+..|+.+...|+.+|..++.|+..++.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888887763
No 56
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=21.87 E-value=92 Score=23.87 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
--|.-..++.+|+.|+.+|..++.+|..++.
T Consensus 14 ~~g~~~~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 14 DRGDSRAIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455578888999999999999999988654
No 57
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=21.79 E-value=4.1e+02 Score=24.63 Aligned_cols=78 Identities=10% Similarity=0.269 Sum_probs=57.7
Q ss_pred hhhHHHHHhhcchhHHHHHhcCC-CcchHHHH--HHHHHHHhhcccCCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 69 QKFASVHKVFGASNVSKMLNDVP-ESQRADAA--NSLVYEANVRLRDPVYG---CMGAISTLQQQVQCLQAELNVVRNEI 142 (225)
Q Consensus 69 ~rFa~vhKvFG~SNV~kmL~~lp-~~~R~dA~--~SLvYEA~aR~rDPVyG---CvG~I~~Lq~QI~~lqaEL~~vr~eL 142 (225)
+.|..+...||+.++-++-.++. -..-+++- ....|+=. +=|.| .++.|-..+.+|+.++.+..+++..+
T Consensus 132 ~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry----~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~~Ki 207 (374)
T 2y9y_A 132 RKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI----ERIEDYEKYLKIIENEEEKIKRVKMQQEALRRKL 207 (374)
T ss_dssp HHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC----SSCSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh----hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777889999999999999996 33333322 22333322 22333 68899999999999999999999999
Q ss_pred HHhhhhhh
Q 027307 143 IKYKYREA 150 (225)
Q Consensus 143 ~~~~~~~A 150 (225)
..|+.+-.
T Consensus 208 ~~y~~P~~ 215 (374)
T 2y9y_A 208 SEYKNPFF 215 (374)
T ss_dssp TTCSSHHH
T ss_pred HHccCCHH
Confidence 99998865
No 58
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.53 E-value=1.2e+02 Score=22.61 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
-+..|+++...|+++|..++.|+..++.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777776664
No 59
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=21.42 E-value=1.1e+02 Score=22.38 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=25.6
Q ss_pred HHHHhhcchhHHHHHhcCC-CcchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 027307 73 SVHKVFGASNVSKMLNDVP-ESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVV 138 (225)
Q Consensus 73 ~vhKvFG~SNV~kmL~~lp-~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~v 138 (225)
+++.+|--.+.-.+.+.|. ...+-+-+++|+.|+.+ ....|..|+..|+.||-.+
T Consensus 7 ~~~~w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEa-----------tnarL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 7 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEA-----------TNAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp ----------------------CTTSHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666665 34667889999999987 2334777788888877654
No 60
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=21.04 E-value=29 Score=22.40 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCChhhhh
Q 027307 32 GPPGTLNTITPCAACKL 48 (225)
Q Consensus 32 ~~~~~~~t~~~CAACK~ 48 (225)
|..|++..-+.|..||-
T Consensus 1 gssgsskikqhcrfckk 17 (37)
T 2elu_A 1 GSSGSSGIKQHCRFCKK 17 (37)
T ss_dssp CCSCCCCCCCEETTTTE
T ss_pred CCCchHHHHHHHHHHHH
Confidence 45678888899988873
No 61
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.00 E-value=1.3e+02 Score=20.34 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
.|..|+.++..|+.+-..++.++...+..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555554433
No 62
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.89 E-value=1.3e+02 Score=19.16 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027307 121 ISTLQQQVQCLQAELNVVRNEI 142 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL 142 (225)
+...|+.|++++.+-+.+..|+
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHH
Confidence 4566777777777777776665
No 63
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.74 E-value=1.4e+02 Score=20.35 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
.-+..|+.+...|+.++..++.++...+.
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777665543
No 64
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.72 E-value=59 Score=24.45 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 123 TLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 123 ~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
.|+..|..|++++..+..+|..++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554443
No 65
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.51 E-value=1.2e+02 Score=18.21 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027307 122 STLQQQVQCLQAELNVVRNEI 142 (225)
Q Consensus 122 ~~Lq~QI~~lqaEL~~vr~eL 142 (225)
-.|..+++.+|+.|..++..|
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356677888888888777765
No 66
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.43 E-value=1.4e+02 Score=20.44 Aligned_cols=23 Identities=0% Similarity=0.167 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027307 121 ISTLQQQVQCLQAELNVVRNEII 143 (225)
Q Consensus 121 I~~Lq~QI~~lqaEL~~vr~eL~ 143 (225)
|.+|+.+|..++.++..++.|-+
T Consensus 20 VdqLssdV~al~~~v~~ak~eA~ 42 (52)
T 1jcd_A 20 ADQASNDANAARSDAQAAKDDAA 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444443
No 67
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.41 E-value=1.9e+02 Score=19.38 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 120 AISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 120 ~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
-+..|..+...|+.++..++.|+...+.
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665543
No 68
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.03 E-value=1.9e+02 Score=19.45 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 118 MGAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 118 vG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
-+-+..|..+...|+.++..++.|+...+.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888877654
Done!